Query 040279
Match_columns 626
No_of_seqs 676 out of 4125
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 06:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.7E-71 5.8E-76 601.0 57.9 545 40-624 123-701 (857)
2 PLN03218 maturation of RBCL 1; 100.0 2.5E-66 5.4E-71 549.8 66.3 519 39-580 371-915 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 5.2E-64 1.1E-68 532.1 64.8 499 71-593 366-892 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.9E-64 4E-69 547.6 60.0 551 36-614 49-655 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.5E-60 3.3E-65 504.7 52.7 472 73-576 85-559 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1E-59 2.2E-64 498.5 55.3 471 40-543 89-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-33 7.4E-38 311.6 66.7 534 55-625 344-882 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-32 4.1E-37 305.5 66.8 470 126-624 338-847 (899)
9 PRK11447 cellulose synthase su 100.0 2.7E-25 5.8E-30 247.7 67.0 546 35-614 25-705 (1157)
10 PRK11447 cellulose synthase su 100.0 1.5E-24 3.2E-29 241.7 63.8 493 55-573 127-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.8E-22 3.9E-27 214.6 58.9 531 44-623 48-720 (987)
12 KOG4626 O-linked N-acetylgluco 100.0 4E-24 8.7E-29 201.3 37.9 453 78-563 51-508 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 4.1E-24 8.9E-29 201.3 36.6 434 124-586 55-493 (966)
14 PRK09782 bacteriophage N4 rece 99.9 2.6E-21 5.7E-26 205.8 58.2 501 34-572 74-704 (987)
15 KOG2002 TPR-containing nuclear 99.9 6.4E-21 1.4E-25 189.5 47.1 513 42-572 166-743 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 4E-20 8.6E-25 193.8 49.8 426 122-573 132-570 (615)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-19 6.2E-24 187.4 53.6 431 77-536 129-570 (615)
18 KOG2002 TPR-containing nuclear 99.9 1.2E-19 2.7E-24 180.5 45.4 465 55-545 251-749 (1018)
19 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.1E-25 187.5 34.0 301 55-368 50-353 (389)
20 PRK10049 pgaA outer membrane p 99.9 9.9E-19 2.2E-23 186.5 48.7 402 151-572 14-454 (765)
21 PRK10049 pgaA outer membrane p 99.9 1.5E-18 3.3E-23 185.2 49.4 409 126-555 24-470 (765)
22 PRK11788 tetratricopeptide rep 99.9 3.4E-20 7.4E-25 184.8 34.1 302 158-507 41-352 (389)
23 PRK15174 Vi polysaccharide exp 99.9 8.7E-19 1.9E-23 182.9 44.8 326 126-466 51-380 (656)
24 PRK15174 Vi polysaccharide exp 99.9 1.3E-18 2.9E-23 181.5 45.8 333 78-433 45-382 (656)
25 PRK14574 hmsH outer membrane p 99.9 2E-17 4.3E-22 172.8 52.9 457 35-536 31-512 (822)
26 PRK14574 hmsH outer membrane p 99.9 2.3E-17 5.1E-22 172.3 53.3 450 76-573 35-512 (822)
27 KOG2003 TPR repeat-containing 99.8 1.1E-17 2.3E-22 152.7 30.6 461 76-573 202-688 (840)
28 KOG2076 RNA polymerase III tra 99.8 1.2E-14 2.6E-19 144.5 52.8 550 54-625 153-785 (895)
29 KOG1915 Cell cycle control pro 99.8 1.3E-14 2.7E-19 133.7 47.3 493 54-572 87-623 (677)
30 KOG4422 Uncharacterized conser 99.8 4.1E-15 9E-20 135.1 42.2 429 74-536 115-589 (625)
31 KOG0495 HAT repeat protein [RN 99.8 6.8E-14 1.5E-18 133.9 52.2 519 54-597 265-865 (913)
32 KOG0495 HAT repeat protein [RN 99.8 4.4E-14 9.6E-19 135.2 50.6 483 55-572 391-878 (913)
33 KOG2003 TPR repeat-containing 99.8 2.7E-15 5.9E-20 137.2 35.5 485 44-560 207-709 (840)
34 KOG2076 RNA polymerase III tra 99.8 1.7E-14 3.7E-19 143.4 43.9 529 77-624 141-750 (895)
35 KOG4422 Uncharacterized conser 99.8 3.9E-14 8.4E-19 128.9 42.0 442 40-519 118-607 (625)
36 KOG1915 Cell cycle control pro 99.8 4.3E-13 9.2E-18 123.8 45.3 482 61-573 60-584 (677)
37 KOG0547 Translocase of outer m 99.7 7E-14 1.5E-18 129.5 31.3 414 122-571 120-563 (606)
38 KOG1155 Anaphase-promoting com 99.7 3E-12 6.6E-17 118.1 41.0 366 148-536 160-535 (559)
39 PRK10747 putative protoheme IX 99.7 2.8E-13 6E-18 133.5 35.2 251 309-572 129-388 (398)
40 KOG1173 Anaphase-promoting com 99.7 1.7E-12 3.7E-17 122.8 37.4 267 297-572 243-516 (611)
41 TIGR00540 hemY_coli hemY prote 99.7 3.9E-13 8.4E-18 133.3 34.4 291 275-573 96-398 (409)
42 KOG1155 Anaphase-promoting com 99.7 3.9E-12 8.5E-17 117.3 37.4 365 191-572 162-534 (559)
43 PF13429 TPR_15: Tetratricopep 99.6 6.5E-16 1.4E-20 145.5 11.0 259 303-572 13-275 (280)
44 PRK10747 putative protoheme IX 99.6 1.3E-12 2.8E-17 128.9 33.8 252 274-536 129-389 (398)
45 KOG3785 Uncharacterized conser 99.6 1.1E-11 2.4E-16 110.4 35.5 230 348-595 269-506 (557)
46 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.7E-17 128.8 34.3 293 240-536 96-398 (409)
47 KOG0547 Translocase of outer m 99.6 1.9E-12 4.2E-17 120.1 31.4 221 308-536 336-565 (606)
48 COG2956 Predicted N-acetylgluc 99.6 2.9E-12 6.3E-17 112.8 30.1 229 55-292 50-278 (389)
49 KOG1173 Anaphase-promoting com 99.6 2.1E-11 4.6E-16 115.5 37.7 283 262-554 243-531 (611)
50 COG2956 Predicted N-acetylgluc 99.6 3.7E-12 7.9E-17 112.1 30.2 292 129-430 47-345 (389)
51 KOG2047 mRNA splicing factor [ 99.6 1.2E-09 2.6E-14 105.3 48.7 496 45-571 109-684 (835)
52 KOG1126 DNA-binding cell divis 99.6 3.6E-13 7.8E-18 130.1 25.1 288 131-435 333-623 (638)
53 KOG2047 mRNA splicing factor [ 99.6 3.4E-10 7.4E-15 108.9 44.6 500 74-615 101-657 (835)
54 PF13429 TPR_15: Tetratricopep 99.6 6.9E-15 1.5E-19 138.6 13.2 257 125-394 16-274 (280)
55 COG3071 HemY Uncharacterized e 99.6 1E-11 2.2E-16 112.9 32.6 285 276-572 97-388 (400)
56 KOG1126 DNA-binding cell divis 99.6 3E-13 6.4E-18 130.6 24.2 286 243-544 334-623 (638)
57 COG3071 HemY Uncharacterized e 99.6 4.1E-11 8.9E-16 109.1 33.3 287 129-431 96-389 (400)
58 KOG3785 Uncharacterized conser 99.6 1E-10 2.2E-15 104.3 34.5 445 55-549 37-498 (557)
59 KOG4162 Predicted calmodulin-b 99.5 1.7E-09 3.7E-14 106.7 43.7 405 147-572 318-781 (799)
60 KOG1174 Anaphase-promoting com 99.5 3.4E-09 7.3E-14 96.8 40.8 312 260-589 191-508 (564)
61 KOG1156 N-terminal acetyltrans 99.5 3.8E-09 8.3E-14 102.2 42.9 454 87-571 19-508 (700)
62 KOG1156 N-terminal acetyltrans 99.5 1.1E-08 2.3E-13 99.2 42.7 450 55-534 22-508 (700)
63 KOG1129 TPR repeat-containing 99.5 1.1E-11 2.5E-16 109.1 19.1 223 339-571 229-455 (478)
64 PRK12370 invasion protein regu 99.5 4E-11 8.6E-16 123.7 26.7 273 71-362 252-535 (553)
65 KOG1129 TPR repeat-containing 99.4 1.1E-11 2.4E-16 109.2 18.5 234 302-545 227-462 (478)
66 KOG4318 Bicoid mRNA stability 99.4 3.1E-10 6.7E-15 113.2 30.5 259 61-348 11-286 (1088)
67 KOG4162 Predicted calmodulin-b 99.4 3.4E-09 7.5E-14 104.6 36.0 438 71-536 319-782 (799)
68 PRK12370 invasion protein regu 99.4 1.5E-10 3.2E-15 119.5 27.6 218 131-361 275-501 (553)
69 PF12569 NARP1: NMDA receptor- 99.4 1.6E-08 3.5E-13 100.7 39.1 49 518-570 466-516 (517)
70 TIGR02521 type_IV_pilW type IV 99.4 4.1E-10 8.8E-15 103.6 26.0 198 369-572 32-230 (234)
71 KOG2376 Signal recognition par 99.4 1.3E-07 2.8E-12 90.9 41.2 457 40-536 14-519 (652)
72 TIGR02521 type_IV_pilW type IV 99.4 7.7E-10 1.7E-14 101.8 26.1 200 333-536 31-231 (234)
73 PF12569 NARP1: NMDA receptor- 99.3 2.7E-08 5.9E-13 99.1 37.6 293 158-466 10-333 (517)
74 KOG2376 Signal recognition par 99.3 2E-07 4.3E-12 89.6 40.9 447 80-571 17-517 (652)
75 KOG0548 Molecular co-chaperone 99.3 7.7E-09 1.7E-13 98.2 31.2 105 125-238 10-114 (539)
76 KOG4318 Bicoid mRNA stability 99.3 5.7E-09 1.2E-13 104.5 31.0 85 191-278 202-286 (1088)
77 KOG1174 Anaphase-promoting com 99.3 2.1E-07 4.5E-12 85.5 37.0 203 345-558 312-517 (564)
78 KOG1840 Kinesin light chain [C 99.3 2E-09 4.3E-14 105.7 23.8 240 334-573 200-478 (508)
79 KOG1127 TPR repeat-containing 99.3 2E-07 4.3E-12 94.9 37.4 505 40-572 494-1065(1238)
80 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.6E-13 95.3 28.4 220 129-363 38-266 (296)
81 COG3063 PilF Tfp pilus assembl 99.2 6E-09 1.3E-13 88.1 22.1 196 371-572 38-234 (250)
82 KOG1840 Kinesin light chain [C 99.2 8.3E-09 1.8E-13 101.4 26.2 244 151-394 198-476 (508)
83 COG3063 PilF Tfp pilus assembl 99.2 1.1E-08 2.3E-13 86.6 22.8 194 123-326 41-235 (250)
84 KOG3616 Selective LIM binding 99.2 2.7E-07 5.9E-12 90.7 35.4 45 54-100 458-502 (1636)
85 KOG0548 Molecular co-chaperone 99.2 5.4E-08 1.2E-12 92.5 29.4 402 158-595 8-471 (539)
86 KOG4340 Uncharacterized conser 99.2 5.6E-08 1.2E-12 85.2 25.7 94 40-144 12-105 (459)
87 KOG1127 TPR repeat-containing 99.2 1.2E-06 2.5E-11 89.5 37.6 542 53-622 575-1188(1238)
88 PRK11189 lipoprotein NlpI; Pro 99.2 4.6E-08 1E-12 92.3 26.9 224 86-329 37-267 (296)
89 cd05804 StaR_like StaR_like; a 99.1 4.1E-07 8.9E-12 89.5 34.2 201 75-291 6-214 (355)
90 KOG4340 Uncharacterized conser 99.1 2E-07 4.3E-12 81.8 27.1 396 78-502 13-443 (459)
91 PF13041 PPR_2: PPR repeat fam 99.1 2E-10 4.3E-15 75.2 6.1 49 226-274 1-49 (50)
92 KOG1914 mRNA cleavage and poly 99.1 8.6E-06 1.9E-10 77.9 38.3 416 67-502 13-501 (656)
93 PF13041 PPR_2: PPR repeat fam 99.1 3.6E-10 7.9E-15 74.0 6.7 49 471-519 1-49 (50)
94 cd05804 StaR_like StaR_like; a 99.1 1.1E-06 2.3E-11 86.6 33.3 201 190-396 3-214 (355)
95 KOG0624 dsRNA-activated protei 99.1 3E-06 6.5E-11 76.1 31.8 315 151-502 37-370 (504)
96 PF04733 Coatomer_E: Coatomer 99.0 9E-09 1.9E-13 95.5 16.3 149 377-536 111-264 (290)
97 KOG0624 dsRNA-activated protei 99.0 1.4E-06 3.1E-11 78.1 28.3 319 73-433 36-371 (504)
98 KOG3616 Selective LIM binding 99.0 1.9E-06 4.1E-11 85.0 31.3 353 158-571 738-1131(1636)
99 KOG3617 WD40 and TPR repeat-co 99.0 2.6E-05 5.6E-10 78.3 39.1 245 53-360 741-994 (1416)
100 PRK04841 transcriptional regul 99.0 7.6E-06 1.6E-10 91.5 40.4 336 201-536 382-759 (903)
101 KOG0985 Vesicle coat protein c 99.0 7.7E-05 1.7E-09 76.8 42.7 202 298-534 1104-1305(1666)
102 KOG1125 TPR repeat-containing 99.0 4.4E-08 9.6E-13 94.0 17.7 250 345-603 297-561 (579)
103 PRK04841 transcriptional regul 98.9 4.1E-06 8.9E-11 93.6 35.4 338 160-503 382-761 (903)
104 PF04733 Coatomer_E: Coatomer 98.9 4.5E-08 9.7E-13 90.9 16.5 247 307-572 10-263 (290)
105 KOG1914 mRNA cleavage and poly 98.9 5.8E-05 1.3E-09 72.4 40.5 410 149-572 17-499 (656)
106 KOG0985 Vesicle coat protein c 98.9 0.00014 3.1E-09 74.9 43.9 204 332-572 1103-1306(1666)
107 KOG1125 TPR repeat-containing 98.9 1.6E-07 3.4E-12 90.3 18.8 252 307-568 294-565 (579)
108 KOG1070 rRNA processing protei 98.8 4.8E-06 1E-10 88.2 26.5 168 336-507 1500-1668(1710)
109 KOG1128 Uncharacterized conser 98.8 3.1E-06 6.8E-11 83.8 23.4 215 300-536 400-615 (777)
110 KOG3617 WD40 and TPR repeat-co 98.8 0.00035 7.5E-09 70.6 38.8 264 39-361 801-1108(1416)
111 KOG1070 rRNA processing protei 98.8 5.3E-06 1.2E-10 87.9 25.8 219 127-356 1468-1694(1710)
112 PRK15359 type III secretion sy 98.8 3.4E-07 7.4E-12 75.8 14.2 89 478-571 29-118 (144)
113 TIGR03302 OM_YfiO outer membra 98.7 1.7E-06 3.7E-11 79.3 19.9 191 34-257 29-232 (235)
114 PLN02789 farnesyltranstransfer 98.7 1.8E-05 3.9E-10 74.7 26.1 203 346-557 50-267 (320)
115 COG5010 TadD Flp pilus assembl 98.7 3.9E-06 8.4E-11 73.1 19.2 156 125-290 74-229 (257)
116 TIGR03302 OM_YfiO outer membra 98.7 2.9E-06 6.2E-11 77.8 19.9 184 367-572 32-230 (235)
117 KOG1128 Uncharacterized conser 98.7 2.5E-06 5.5E-11 84.5 19.7 216 154-396 400-615 (777)
118 COG5010 TadD Flp pilus assembl 98.7 6.4E-06 1.4E-10 71.8 19.8 158 407-571 70-228 (257)
119 PLN02789 farnesyltranstransfer 98.7 3.4E-05 7.3E-10 72.9 26.4 205 163-379 48-266 (320)
120 KOG3081 Vesicle coat complex C 98.7 2.4E-05 5.2E-10 68.2 22.8 171 355-536 95-270 (299)
121 KOG3060 Uncharacterized conser 98.6 1.8E-05 3.9E-10 68.4 20.9 136 412-554 61-197 (289)
122 KOG2053 Mitochondrial inherita 98.6 0.00099 2.1E-08 68.3 46.9 219 55-293 24-256 (932)
123 PRK14720 transcript cleavage f 98.6 2.4E-05 5.1E-10 82.4 26.3 153 151-344 115-268 (906)
124 KOG3081 Vesicle coat complex C 98.6 1.1E-05 2.3E-10 70.3 19.1 248 305-571 15-268 (299)
125 PRK10370 formate-dependent nit 98.6 1.2E-05 2.7E-10 70.5 20.1 119 130-257 52-173 (198)
126 PRK10370 formate-dependent nit 98.6 7.8E-06 1.7E-10 71.7 18.6 118 416-536 52-172 (198)
127 PRK15179 Vi polysaccharide bio 98.6 2.5E-05 5.5E-10 81.4 24.7 125 124-257 93-217 (694)
128 PRK15359 type III secretion sy 98.6 4.8E-06 1E-10 69.0 15.6 107 441-553 27-134 (144)
129 PRK15179 Vi polysaccharide bio 98.5 2E-05 4.4E-10 82.1 21.5 144 74-234 85-228 (694)
130 PRK14720 transcript cleavage f 98.5 9.1E-05 2E-09 78.2 25.7 62 229-292 117-178 (906)
131 PF12854 PPR_1: PPR repeat 98.4 2.7E-07 5.8E-12 53.9 3.7 32 223-254 2-33 (34)
132 COG4783 Putative Zn-dependent 98.4 3.6E-05 7.8E-10 73.2 19.3 147 76-257 307-454 (484)
133 KOG3060 Uncharacterized conser 98.4 0.00024 5.2E-09 61.7 22.4 160 373-536 57-219 (289)
134 PF12854 PPR_1: PPR repeat 98.4 4.6E-07 1E-11 52.9 4.0 32 468-499 2-33 (34)
135 TIGR02552 LcrH_SycD type III s 98.4 1.1E-05 2.4E-10 66.6 13.9 96 439-536 18-113 (135)
136 KOG2053 Mitochondrial inherita 98.4 0.0041 8.9E-08 64.0 48.0 498 44-571 47-605 (932)
137 TIGR02552 LcrH_SycD type III s 98.3 1.1E-05 2.5E-10 66.4 12.6 106 460-572 5-112 (135)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.1E-05 4.5E-10 75.7 15.7 124 440-572 171-295 (395)
139 PF09976 TPR_21: Tetratricopep 98.3 4.7E-05 1E-09 63.4 15.5 126 440-571 14-144 (145)
140 COG4783 Putative Zn-dependent 98.3 0.00055 1.2E-08 65.4 22.9 138 378-536 316-453 (484)
141 PF09976 TPR_21: Tetratricopep 98.2 0.0001 2.2E-09 61.4 15.1 116 416-534 24-144 (145)
142 KOG2041 WD40 repeat protein [G 98.1 0.007 1.5E-07 60.5 28.4 212 149-395 689-905 (1189)
143 PRK15363 pathogenicity island 98.0 0.00012 2.7E-09 59.5 11.5 93 475-572 37-130 (157)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.7E-09 68.3 15.6 123 372-501 173-296 (395)
145 KOG2041 WD40 repeat protein [G 98.0 0.025 5.4E-07 56.7 29.1 223 56-324 679-904 (1189)
146 COG3898 Uncharacterized membra 98.0 0.016 3.4E-07 54.0 31.5 249 311-575 133-393 (531)
147 PRK15363 pathogenicity island 98.0 0.00039 8.4E-09 56.7 13.4 95 440-536 37-131 (157)
148 PF12895 Apc3: Anaphase-promot 98.0 2.2E-05 4.8E-10 58.2 5.9 81 486-571 2-84 (84)
149 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00022 4.9E-09 57.1 12.2 92 475-572 4-103 (119)
150 cd00189 TPR Tetratricopeptide 97.9 0.00018 3.9E-09 54.8 11.3 92 476-572 3-95 (100)
151 PF07079 DUF1347: Protein of u 97.9 0.022 4.8E-07 54.2 42.4 454 84-571 15-521 (549)
152 KOG0553 TPR repeat-containing 97.9 9.9E-05 2.1E-09 65.9 10.1 98 446-550 89-187 (304)
153 cd00189 TPR Tetratricopeptide 97.9 0.00021 4.7E-09 54.4 10.9 94 441-536 3-96 (100)
154 KOG0550 Molecular chaperone (D 97.9 0.017 3.7E-07 54.3 24.0 276 158-466 55-349 (486)
155 KOG0553 TPR repeat-containing 97.9 0.00017 3.6E-09 64.5 10.8 101 411-516 89-190 (304)
156 PRK02603 photosystem I assembl 97.8 0.00081 1.8E-08 57.9 14.5 95 441-536 38-148 (172)
157 TIGR00756 PPR pentatricopeptid 97.8 4.1E-05 8.8E-10 45.5 4.6 33 230-262 2-34 (35)
158 TIGR00756 PPR pentatricopeptid 97.8 4.3E-05 9.4E-10 45.4 4.5 33 475-507 2-34 (35)
159 PLN03088 SGT1, suppressor of 97.8 0.00042 9.1E-09 67.2 13.4 101 444-550 8-108 (356)
160 PF14938 SNAP: Soluble NSF att 97.8 0.0028 6.1E-08 59.5 18.4 127 444-571 120-263 (282)
161 PLN03088 SGT1, suppressor of 97.8 0.00054 1.2E-08 66.5 13.9 103 409-515 8-110 (356)
162 KOG1130 Predicted G-alpha GTPa 97.8 0.0002 4.3E-09 66.5 10.1 274 83-361 25-343 (639)
163 PF12895 Apc3: Anaphase-promot 97.8 5.2E-05 1.1E-09 56.2 5.2 81 54-143 3-84 (84)
164 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00079 1.7E-08 53.9 12.6 100 154-257 4-105 (119)
165 PF13812 PPR_3: Pentatricopept 97.7 5.7E-05 1.2E-09 44.5 4.1 33 76-108 2-34 (34)
166 PF13812 PPR_3: Pentatricopept 97.7 6.6E-05 1.4E-09 44.2 4.4 33 474-506 2-34 (34)
167 PF10037 MRP-S27: Mitochondria 97.7 0.00082 1.8E-08 65.2 14.0 123 364-486 62-186 (429)
168 PRK10153 DNA-binding transcrip 97.7 0.0022 4.9E-08 65.0 17.7 143 400-549 334-490 (517)
169 KOG0550 Molecular chaperone (D 97.7 0.0056 1.2E-07 57.3 18.4 157 341-502 177-350 (486)
170 COG4700 Uncharacterized protei 97.7 0.017 3.6E-07 48.0 19.0 133 400-534 86-219 (251)
171 PF14938 SNAP: Soluble NSF att 97.7 0.00081 1.8E-08 63.2 13.8 176 77-257 37-225 (282)
172 PRK02603 photosystem I assembl 97.7 0.0016 3.4E-08 56.1 13.7 84 473-560 35-121 (172)
173 PF05843 Suf: Suppressor of fo 97.6 0.00081 1.8E-08 62.8 12.5 145 369-518 2-150 (280)
174 COG4700 Uncharacterized protei 97.6 0.017 3.6E-07 48.0 17.9 133 435-573 86-221 (251)
175 PRK10866 outer membrane biogen 97.6 0.013 2.7E-07 53.4 19.5 66 37-104 31-98 (243)
176 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.5E-08 60.9 14.1 125 441-571 4-133 (280)
177 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.5E-08 64.3 13.2 119 262-380 65-185 (429)
178 CHL00033 ycf3 photosystem I as 97.6 0.0015 3.3E-08 56.0 12.8 93 439-532 36-137 (168)
179 CHL00033 ycf3 photosystem I as 97.6 0.0013 2.9E-08 56.4 12.3 115 454-572 15-140 (168)
180 PF13414 TPR_11: TPR repeat; P 97.6 0.00025 5.4E-09 50.1 6.3 62 474-536 4-66 (69)
181 PRK10866 outer membrane biogen 97.6 0.03 6.4E-07 51.0 20.9 59 513-571 180-238 (243)
182 PRK10153 DNA-binding transcrip 97.5 0.0053 1.1E-07 62.4 17.4 144 69-222 331-482 (517)
183 PF13414 TPR_11: TPR repeat; P 97.5 0.0003 6.5E-09 49.7 6.2 62 507-572 2-65 (69)
184 PF13432 TPR_16: Tetratricopep 97.5 0.00042 9E-09 48.3 6.8 54 515-572 4-58 (65)
185 PF13432 TPR_16: Tetratricopep 97.5 0.00035 7.5E-09 48.7 6.4 56 480-536 4-59 (65)
186 PF14559 TPR_19: Tetratricopep 97.5 0.00036 7.9E-09 49.1 5.9 61 54-117 5-65 (68)
187 COG4235 Cytochrome c biogenesi 97.5 0.0056 1.2E-07 55.4 14.4 97 472-573 155-255 (287)
188 KOG1130 Predicted G-alpha GTPa 97.4 0.0016 3.5E-08 60.7 10.9 268 124-395 24-342 (639)
189 PF01535 PPR: PPR repeat; Int 97.4 0.00024 5.2E-09 40.7 3.7 28 230-257 2-29 (31)
190 PF14559 TPR_19: Tetratricopep 97.4 0.00067 1.5E-08 47.7 6.8 60 484-548 2-61 (68)
191 PF12688 TPR_5: Tetratrico pep 97.4 0.006 1.3E-07 48.0 12.5 93 125-221 9-103 (120)
192 PF12688 TPR_5: Tetratrico pep 97.4 0.0096 2.1E-07 46.9 13.4 54 448-501 11-66 (120)
193 PF08579 RPM2: Mitochondrial r 97.4 0.0033 7.2E-08 47.4 10.0 74 375-448 32-114 (120)
194 COG4235 Cytochrome c biogenesi 97.4 0.011 2.3E-07 53.6 15.0 121 55-182 137-257 (287)
195 PRK10803 tol-pal system protei 97.3 0.0037 7.9E-08 57.3 12.3 95 476-572 146-244 (263)
196 PF01535 PPR: PPR repeat; Int 97.3 0.00031 6.7E-09 40.2 3.5 29 475-503 2-30 (31)
197 COG3898 Uncharacterized membra 97.3 0.14 3.1E-06 48.0 30.8 297 41-362 85-392 (531)
198 KOG2280 Vacuolar assembly/sort 97.3 0.26 5.6E-06 50.4 29.7 341 189-570 428-795 (829)
199 PF08579 RPM2: Mitochondrial r 97.3 0.0047 1E-07 46.7 10.1 74 235-308 32-114 (120)
200 PF13525 YfiO: Outer membrane 97.3 0.031 6.6E-07 49.5 17.4 68 40-111 7-76 (203)
201 KOG2796 Uncharacterized conser 97.3 0.094 2E-06 46.3 18.9 138 405-547 179-321 (366)
202 PF13525 YfiO: Outer membrane 97.3 0.052 1.1E-06 48.1 18.4 67 74-146 4-71 (203)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.21 4.6E-06 47.8 36.6 85 68-164 36-121 (660)
204 KOG1538 Uncharacterized conser 97.2 0.022 4.8E-07 56.6 16.0 100 154-288 558-657 (1081)
205 KOG1258 mRNA processing protei 97.2 0.33 7.1E-06 48.6 34.9 186 332-522 296-489 (577)
206 KOG2114 Vacuolar assembly/sort 97.1 0.42 9.1E-06 49.7 27.9 181 77-289 336-516 (933)
207 KOG2280 Vacuolar assembly/sort 97.1 0.43 9.2E-06 49.0 36.3 380 112-535 385-797 (829)
208 PF13281 DUF4071: Domain of un 97.1 0.084 1.8E-06 50.5 18.8 34 547-587 307-340 (374)
209 PF13371 TPR_9: Tetratricopept 97.1 0.0036 7.8E-08 44.7 7.6 54 482-536 4-57 (73)
210 PF08631 SPO22: Meiosis protei 97.1 0.28 6E-06 46.0 25.8 163 86-256 4-185 (278)
211 KOG2796 Uncharacterized conser 97.0 0.22 4.8E-06 44.1 22.9 140 265-407 179-323 (366)
212 PF13424 TPR_12: Tetratricopep 97.0 0.0023 5E-08 46.5 6.0 69 75-145 5-74 (78)
213 PRK10803 tol-pal system protei 97.0 0.018 3.9E-07 52.9 12.8 94 441-536 146-245 (263)
214 COG4105 ComL DNA uptake lipopr 96.9 0.26 5.6E-06 43.9 20.7 82 36-119 32-115 (254)
215 PF06239 ECSIT: Evolutionarily 96.9 0.019 4E-07 49.5 11.6 33 489-521 119-151 (228)
216 PRK15331 chaperone protein Sic 96.9 0.02 4.2E-07 47.2 11.1 86 449-536 48-133 (165)
217 PF06239 ECSIT: Evolutionarily 96.9 0.026 5.7E-07 48.6 12.2 102 297-417 46-152 (228)
218 KOG2114 Vacuolar assembly/sort 96.9 0.73 1.6E-05 48.0 26.8 178 43-254 339-516 (933)
219 PF04840 Vps16_C: Vps16, C-ter 96.9 0.45 9.7E-06 45.2 28.4 105 410-534 184-288 (319)
220 PF13371 TPR_9: Tetratricopept 96.8 0.0068 1.5E-07 43.3 7.3 65 47-116 4-68 (73)
221 KOG0543 FKBP-type peptidyl-pro 96.8 0.027 5.9E-07 53.1 12.4 95 474-573 258-354 (397)
222 PRK15331 chaperone protein Sic 96.7 0.14 3.1E-06 42.2 14.7 87 413-501 47-133 (165)
223 PF13281 DUF4071: Domain of un 96.7 0.37 8E-06 46.3 19.5 119 416-536 195-333 (374)
224 PF03704 BTAD: Bacterial trans 96.7 0.037 8E-07 46.1 11.7 70 154-230 64-138 (146)
225 KOG0543 FKBP-type peptidyl-pro 96.6 0.043 9.4E-07 51.8 12.7 136 79-222 212-355 (397)
226 KOG1258 mRNA processing protei 96.6 0.91 2E-05 45.6 32.4 117 167-291 60-179 (577)
227 PF03704 BTAD: Bacterial trans 96.6 0.032 7E-07 46.4 10.9 61 510-574 64-125 (146)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.095 2.1E-06 50.9 14.9 69 34-104 71-141 (453)
229 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.79 1.7E-05 44.1 34.2 458 33-518 37-545 (660)
230 COG1729 Uncharacterized protei 96.6 0.041 8.9E-07 49.3 11.4 98 41-146 144-244 (262)
231 PF04840 Vps16_C: Vps16, C-ter 96.5 0.8 1.7E-05 43.5 30.9 108 370-497 179-286 (319)
232 KOG1538 Uncharacterized conser 96.5 0.22 4.7E-06 49.9 16.8 201 352-572 619-844 (1081)
233 PF13512 TPR_18: Tetratricopep 96.4 0.11 2.4E-06 41.8 12.1 79 37-117 9-89 (142)
234 PRK11906 transcriptional regul 96.4 0.51 1.1E-05 46.1 18.5 174 71-253 244-432 (458)
235 KOG4555 TPR repeat-containing 96.4 0.12 2.6E-06 40.2 11.5 89 54-147 57-145 (175)
236 PF13424 TPR_12: Tetratricopep 96.4 0.0058 1.3E-07 44.3 4.3 70 152-221 5-74 (78)
237 PRK11906 transcriptional regul 96.3 0.31 6.6E-06 47.6 16.6 110 453-570 319-432 (458)
238 smart00299 CLH Clathrin heavy 96.3 0.13 2.9E-06 42.3 12.8 123 443-593 12-135 (140)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.021 4.5E-07 55.3 8.5 98 471-576 73-176 (453)
240 PF10300 DUF3808: Protein of u 96.2 0.31 6.8E-06 49.3 17.1 167 38-221 188-375 (468)
241 COG1729 Uncharacterized protei 96.2 0.085 1.8E-06 47.4 11.2 95 475-572 144-242 (262)
242 PF12921 ATP13: Mitochondrial 96.2 0.072 1.6E-06 42.5 9.8 86 151-236 1-96 (126)
243 PF07079 DUF1347: Protein of u 96.1 1.4 3E-05 42.7 46.2 455 54-550 20-530 (549)
244 COG0457 NrfG FOG: TPR repeat [ 96.1 1.1 2.3E-05 40.7 28.9 198 369-572 60-263 (291)
245 PF12921 ATP13: Mitochondrial 96.1 0.21 4.4E-06 39.9 11.9 51 468-518 47-98 (126)
246 KOG1941 Acetylcholine receptor 96.1 0.35 7.5E-06 45.0 14.6 162 55-219 21-188 (518)
247 COG4105 ComL DNA uptake lipopr 95.9 1.2 2.6E-05 39.9 19.5 75 200-274 41-117 (254)
248 KOG1585 Protein required for f 95.8 1.2 2.6E-05 39.3 16.0 198 124-354 38-248 (308)
249 KOG1585 Protein required for f 95.8 1.2 2.7E-05 39.2 16.7 86 230-325 33-118 (308)
250 PF10300 DUF3808: Protein of u 95.8 0.3 6.5E-06 49.5 14.6 135 156-292 192-334 (468)
251 COG3118 Thioredoxin domain-con 95.7 1.2 2.7E-05 40.6 16.5 148 157-313 139-287 (304)
252 PF13512 TPR_18: Tetratricopep 95.7 0.38 8.2E-06 38.8 11.9 88 71-163 6-93 (142)
253 COG3118 Thioredoxin domain-con 95.7 1.7 3.7E-05 39.7 18.5 155 412-570 143-297 (304)
254 PF08631 SPO22: Meiosis protei 95.6 2.1 4.5E-05 40.1 25.3 164 405-572 86-273 (278)
255 KOG2066 Vacuolar assembly/sort 95.4 4 8.7E-05 42.5 26.3 102 200-310 363-467 (846)
256 PF04053 Coatomer_WDAD: Coatom 95.4 0.35 7.6E-06 48.2 13.4 153 55-254 276-428 (443)
257 KOG2610 Uncharacterized conser 95.4 2.1 4.5E-05 39.7 16.6 116 346-464 116-235 (491)
258 KOG1920 IkappaB kinase complex 95.3 5.7 0.00012 43.7 22.1 105 411-535 947-1053(1265)
259 KOG1941 Acetylcholine receptor 95.3 1.3 2.9E-05 41.4 15.4 165 84-255 15-189 (518)
260 PF09205 DUF1955: Domain of un 95.2 1.1 2.3E-05 35.3 12.4 60 476-536 89-148 (161)
261 PF04053 Coatomer_WDAD: Coatom 95.2 0.89 1.9E-05 45.4 15.4 157 345-535 273-429 (443)
262 PF13428 TPR_14: Tetratricopep 95.1 0.055 1.2E-06 33.8 4.4 26 511-536 4-29 (44)
263 KOG4555 TPR repeat-containing 95.1 0.47 1E-05 37.1 10.0 88 482-571 52-141 (175)
264 PF09205 DUF1955: Domain of un 95.0 1.3 2.9E-05 34.8 14.3 137 346-504 15-151 (161)
265 PF13431 TPR_17: Tetratricopep 95.0 0.029 6.3E-07 32.6 2.7 32 63-95 2-33 (34)
266 PF13428 TPR_14: Tetratricopep 94.9 0.09 1.9E-06 32.8 5.1 41 153-200 2-42 (44)
267 KOG0890 Protein kinase of the 94.8 12 0.00026 44.7 26.8 324 157-503 1388-1732(2382)
268 PF09613 HrpB1_HrpK: Bacterial 94.7 0.29 6.3E-06 40.3 8.8 52 483-536 20-72 (160)
269 PF13431 TPR_17: Tetratricopep 94.7 0.029 6.2E-07 32.6 2.2 31 531-565 2-33 (34)
270 COG4649 Uncharacterized protei 94.6 2.3 4.9E-05 35.4 17.1 125 54-182 72-197 (221)
271 PF04184 ST7: ST7 protein; In 94.6 5.3 0.00011 39.6 19.6 162 80-270 173-338 (539)
272 COG4785 NlpI Lipoprotein NlpI, 94.5 3 6.5E-05 36.2 15.1 29 264-292 238-266 (297)
273 COG0457 NrfG FOG: TPR repeat [ 94.4 3.6 7.9E-05 37.1 31.5 199 334-536 60-264 (291)
274 KOG2610 Uncharacterized conser 94.3 1.7 3.6E-05 40.3 13.3 187 379-571 114-312 (491)
275 TIGR02561 HrpB1_HrpK type III 94.3 0.26 5.5E-06 39.8 7.2 49 486-536 23-72 (153)
276 COG4649 Uncharacterized protei 94.2 2.8 6.1E-05 34.9 13.3 51 519-571 143-193 (221)
277 PF04184 ST7: ST7 protein; In 94.1 6.3 0.00014 39.1 17.5 78 403-480 259-338 (539)
278 smart00299 CLH Clathrin heavy 94.1 2.7 5.9E-05 34.4 15.7 43 373-416 12-54 (140)
279 PF09613 HrpB1_HrpK: Bacterial 93.9 2.6 5.7E-05 34.9 12.6 15 240-254 56-70 (160)
280 KOG4234 TPR repeat-containing 93.8 0.67 1.5E-05 39.4 9.1 94 447-546 104-202 (271)
281 KOG1586 Protein required for f 93.8 4.4 9.6E-05 35.7 17.7 124 444-571 119-262 (288)
282 PF10602 RPN7: 26S proteasome 93.8 1.7 3.8E-05 37.2 12.1 98 439-536 37-141 (177)
283 PF10602 RPN7: 26S proteasome 93.3 1.6 3.4E-05 37.5 11.2 101 76-181 37-142 (177)
284 KOG3941 Intermediate in Toll s 93.3 1.1 2.5E-05 40.3 10.2 67 55-121 87-169 (406)
285 PF13176 TPR_7: Tetratricopept 93.3 0.18 3.9E-06 29.7 3.9 26 77-102 1-26 (36)
286 COG3629 DnrI DNA-binding trans 93.2 1.1 2.5E-05 41.1 10.4 80 474-554 154-236 (280)
287 PF13176 TPR_7: Tetratricopept 93.1 0.21 4.4E-06 29.5 3.8 26 547-572 1-26 (36)
288 KOG4234 TPR repeat-containing 92.9 1 2.2E-05 38.4 8.8 89 412-502 104-197 (271)
289 PF00515 TPR_1: Tetratricopept 92.8 0.25 5.3E-06 28.6 3.9 26 511-536 4-29 (34)
290 PF13374 TPR_10: Tetratricopep 92.7 0.25 5.4E-06 30.2 4.2 29 546-574 3-31 (42)
291 KOG3941 Intermediate in Toll s 92.5 1.3 2.9E-05 39.9 9.4 48 332-379 66-118 (406)
292 PF07719 TPR_2: Tetratricopept 92.4 0.34 7.3E-06 27.9 4.2 27 546-572 2-28 (34)
293 KOG1550 Extracellular protein 92.4 16 0.00035 38.2 26.3 178 209-398 228-427 (552)
294 KOG1550 Extracellular protein 92.3 16 0.00036 38.2 24.9 184 91-295 228-429 (552)
295 COG3629 DnrI DNA-binding trans 92.1 1.3 2.9E-05 40.6 9.5 77 195-272 155-236 (280)
296 PF07719 TPR_2: Tetratricopept 92.1 0.3 6.5E-06 28.1 3.7 27 510-536 3-29 (34)
297 KOG0276 Vesicle coat complex C 91.9 2.2 4.8E-05 42.9 11.1 147 55-254 601-747 (794)
298 PF04097 Nic96: Nup93/Nic96; 91.8 20 0.00043 38.1 21.0 59 198-257 116-181 (613)
299 PF00515 TPR_1: Tetratricopept 91.8 0.47 1E-05 27.3 4.3 29 76-104 2-30 (34)
300 COG2976 Uncharacterized protei 91.5 8.4 0.00018 33.0 13.0 89 480-572 96-186 (207)
301 PF10345 Cohesin_load: Cohesin 91.3 23 0.00049 37.8 39.8 434 135-572 39-604 (608)
302 PF13170 DUF4003: Protein of u 91.0 14 0.0003 34.8 19.4 128 209-338 78-222 (297)
303 PF13170 DUF4003: Protein of u 90.8 15 0.00032 34.7 21.9 130 279-410 78-224 (297)
304 PF06552 TOM20_plant: Plant sp 90.5 1.5 3.3E-05 36.9 7.4 78 489-571 7-99 (186)
305 PF00637 Clathrin: Region in C 90.4 0.0028 6E-08 52.7 -8.8 9 442-450 46-54 (143)
306 COG3947 Response regulator con 90.3 15 0.00031 33.8 15.5 43 56-100 149-191 (361)
307 KOG4648 Uncharacterized conser 90.2 2.2 4.7E-05 39.7 8.7 87 447-536 106-193 (536)
308 PRK15180 Vi polysaccharide bio 90.0 21 0.00045 35.2 32.2 197 2-223 221-421 (831)
309 PF04097 Nic96: Nup93/Nic96; 89.5 32 0.00069 36.6 19.5 71 75-147 112-182 (613)
310 PF11207 DUF2989: Protein of u 89.2 4.7 0.0001 34.8 9.5 80 484-565 118-198 (203)
311 PF02259 FAT: FAT domain; Int 89.1 23 0.00051 34.5 24.0 65 437-501 145-212 (352)
312 PF13174 TPR_6: Tetratricopept 88.7 0.62 1.3E-05 26.5 3.0 27 78-104 3-29 (33)
313 COG4785 NlpI Lipoprotein NlpI, 88.7 16 0.00034 32.0 16.1 84 242-327 79-162 (297)
314 PF07035 Mic1: Colon cancer-as 88.3 14 0.00031 31.1 15.3 26 254-279 20-45 (167)
315 PF13174 TPR_6: Tetratricopept 87.9 0.92 2E-05 25.7 3.4 26 547-572 2-27 (33)
316 TIGR02561 HrpB1_HrpK type III 87.7 14 0.0003 30.2 11.4 18 204-221 55-72 (153)
317 PF10345 Cohesin_load: Cohesin 87.6 43 0.00093 35.7 40.7 194 56-255 37-252 (608)
318 PF13181 TPR_8: Tetratricopept 87.6 1.2 2.6E-05 25.5 3.7 27 546-572 2-28 (34)
319 PF02259 FAT: FAT domain; Int 87.4 30 0.00065 33.7 24.4 64 368-431 146-212 (352)
320 PF07035 Mic1: Colon cancer-as 87.4 17 0.00036 30.7 15.6 135 137-291 14-148 (167)
321 COG2976 Uncharacterized protei 87.3 18 0.00039 31.1 14.4 88 444-536 95-187 (207)
322 PF13181 TPR_8: Tetratricopept 87.2 0.87 1.9E-05 26.1 3.0 27 510-536 3-29 (34)
323 PRK09687 putative lyase; Provi 86.9 27 0.00058 32.7 26.4 135 402-554 141-276 (280)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 6.4 0.00014 29.2 7.5 46 385-430 24-69 (103)
325 PF13374 TPR_10: Tetratricopep 86.7 1.7 3.6E-05 26.3 4.3 29 75-103 2-30 (42)
326 KOG4648 Uncharacterized conser 86.5 2.2 4.7E-05 39.7 6.3 59 123-182 103-161 (536)
327 PF02284 COX5A: Cytochrome c o 86.2 12 0.00027 28.1 9.0 60 386-446 28-87 (108)
328 KOG4570 Uncharacterized conser 86.1 23 0.00049 33.0 12.3 102 399-502 60-164 (418)
329 KOG4642 Chaperone-dependent E3 85.3 18 0.00039 32.2 10.9 116 54-178 24-143 (284)
330 KOG2396 HAT (Half-A-TPR) repea 85.1 44 0.00095 33.5 40.4 90 60-159 91-181 (568)
331 KOG4570 Uncharacterized conser 85.1 6.3 0.00014 36.4 8.4 49 382-430 114-162 (418)
332 KOG1920 IkappaB kinase complex 84.6 74 0.0016 35.7 30.9 28 264-291 791-820 (1265)
333 PF11207 DUF2989: Protein of u 84.2 12 0.00025 32.5 9.3 73 455-528 123-198 (203)
334 PF02284 COX5A: Cytochrome c o 84.1 16 0.00035 27.5 9.4 45 457-501 29-73 (108)
335 KOG4642 Chaperone-dependent E3 83.4 8 0.00017 34.3 8.0 119 448-570 20-142 (284)
336 PF07721 TPR_4: Tetratricopept 82.9 1.6 3.6E-05 23.3 2.5 22 548-569 4-25 (26)
337 PRK15180 Vi polysaccharide bio 82.6 54 0.0012 32.6 14.6 128 159-295 296-423 (831)
338 TIGR03504 FimV_Cterm FimV C-te 82.1 3.1 6.7E-05 25.8 3.8 26 80-105 4-29 (44)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 81.9 9.6 0.00021 28.3 6.7 49 418-466 22-70 (103)
340 KOG1464 COP9 signalosome, subu 81.8 40 0.00088 30.6 22.6 156 371-535 148-330 (440)
341 KOG0276 Vesicle coat complex C 81.7 42 0.00092 34.4 13.1 102 414-536 648-749 (794)
342 KOG2471 TPR repeat-containing 81.7 42 0.00091 33.4 12.8 39 206-244 30-68 (696)
343 PF06552 TOM20_plant: Plant sp 81.5 11 0.00024 31.9 7.9 77 56-148 51-138 (186)
344 PF07721 TPR_4: Tetratricopept 81.3 2.3 5E-05 22.7 2.7 23 77-99 3-25 (26)
345 KOG2066 Vacuolar assembly/sort 80.1 87 0.0019 33.4 26.5 101 125-240 364-467 (846)
346 COG4455 ImpE Protein of avirul 79.9 16 0.00034 32.1 8.4 76 441-517 4-81 (273)
347 PF04910 Tcf25: Transcriptiona 79.9 63 0.0014 31.6 19.5 117 55-180 25-167 (360)
348 COG4455 ImpE Protein of avirul 78.4 11 0.00024 32.9 7.1 60 155-221 4-63 (273)
349 KOG2396 HAT (Half-A-TPR) repea 78.3 79 0.0017 31.8 38.9 80 135-222 89-169 (568)
350 KOG2471 TPR repeat-containing 77.7 45 0.00097 33.3 11.6 107 413-520 250-381 (696)
351 PRK09687 putative lyase; Provi 77.7 63 0.0014 30.3 26.6 201 297-518 67-277 (280)
352 PRK11619 lytic murein transgly 75.1 1.2E+02 0.0027 32.4 37.8 117 346-465 254-373 (644)
353 PF04190 DUF410: Protein of un 74.5 73 0.0016 29.5 16.4 72 144-216 41-113 (260)
354 PF07163 Pex26: Pex26 protein; 74.5 43 0.00093 30.8 9.9 57 235-291 90-146 (309)
355 KOG3364 Membrane protein invol 73.8 20 0.00042 28.8 6.8 77 38-116 32-110 (149)
356 COG2909 MalT ATP-dependent tra 73.3 1.5E+02 0.0032 32.4 30.6 225 239-463 426-684 (894)
357 KOG0128 RNA-binding protein SA 73.2 1.4E+02 0.003 32.2 31.7 103 72-181 110-219 (881)
358 smart00028 TPR Tetratricopepti 73.1 6.5 0.00014 21.2 3.5 29 76-104 2-30 (34)
359 PF00637 Clathrin: Region in C 73.1 2.3 5E-05 35.0 1.9 54 158-217 13-66 (143)
360 smart00028 TPR Tetratricopepti 73.1 6.4 0.00014 21.3 3.4 18 517-534 10-27 (34)
361 TIGR03504 FimV_Cterm FimV C-te 72.8 9.5 0.00021 23.7 4.0 24 479-502 5-28 (44)
362 PRK10941 hypothetical protein; 72.6 56 0.0012 30.3 10.8 78 476-555 184-261 (269)
363 PF10579 Rapsyn_N: Rapsyn N-te 71.9 15 0.00032 26.2 5.2 18 550-567 48-65 (80)
364 KOG1586 Protein required for f 71.9 74 0.0016 28.5 21.6 24 272-295 163-186 (288)
365 PF14853 Fis1_TPR_C: Fis1 C-te 71.9 15 0.00034 23.9 5.0 38 78-117 4-41 (53)
366 COG3947 Response regulator con 71.3 88 0.0019 29.1 16.8 55 409-464 285-339 (361)
367 PF09986 DUF2225: Uncharacteri 70.9 36 0.00078 30.3 8.9 63 510-572 120-192 (214)
368 PF14853 Fis1_TPR_C: Fis1 C-te 70.5 21 0.00046 23.3 5.4 30 514-547 7-36 (53)
369 PF08424 NRDE-2: NRDE-2, neces 69.9 1.1E+02 0.0023 29.5 16.4 99 149-255 16-129 (321)
370 PRK11619 lytic murein transgly 69.9 1.6E+02 0.0035 31.6 38.9 205 310-534 253-465 (644)
371 KOG0530 Protein farnesyltransf 69.8 89 0.0019 28.5 12.7 80 489-572 94-174 (318)
372 KOG0551 Hsp90 co-chaperone CNS 69.3 33 0.00072 32.3 8.3 86 481-570 89-178 (390)
373 KOG0890 Protein kinase of the 69.1 2.9E+02 0.0063 34.2 33.2 323 233-576 1388-1733(2382)
374 KOG4077 Cytochrome c oxidase, 68.4 58 0.0013 25.8 8.4 71 45-117 55-125 (149)
375 COG1747 Uncharacterized N-term 68.1 1.4E+02 0.0031 30.2 25.3 164 151-327 65-234 (711)
376 PF10579 Rapsyn_N: Rapsyn N-te 67.6 9.9 0.00021 27.0 3.6 56 479-535 13-70 (80)
377 TIGR02508 type_III_yscG type I 67.3 52 0.0011 24.8 8.9 84 50-147 15-98 (115)
378 KOG0686 COP9 signalosome, subu 67.1 1.3E+02 0.0028 29.5 11.8 63 404-466 151-215 (466)
379 TIGR02508 type_III_yscG type I 66.6 54 0.0012 24.8 9.6 86 419-512 21-106 (115)
380 KOG1464 COP9 signalosome, subu 64.4 1.2E+02 0.0025 27.8 22.7 261 55-323 42-328 (440)
381 KOG4507 Uncharacterized conser 63.8 55 0.0012 33.5 9.2 89 86-182 618-706 (886)
382 PF07575 Nucleopor_Nup85: Nup8 63.7 2E+02 0.0044 30.4 17.7 28 382-409 509-536 (566)
383 smart00386 HAT HAT (Half-A-TPR 63.6 19 0.00041 19.8 4.0 30 54-84 1-30 (33)
384 PF11846 DUF3366: Domain of un 63.2 25 0.00053 30.8 6.4 32 541-572 140-171 (193)
385 COG5159 RPN6 26S proteasome re 62.9 1.3E+02 0.0028 27.9 18.8 61 80-140 8-68 (421)
386 KOG4507 Uncharacterized conser 62.9 1.6E+02 0.0035 30.4 12.0 87 275-362 619-705 (886)
387 KOG4077 Cytochrome c oxidase, 62.1 67 0.0015 25.4 7.4 45 387-431 68-112 (149)
388 PRK13800 putative oxidoreducta 61.7 2.8E+02 0.0061 31.4 26.1 153 401-572 726-879 (897)
389 KOG3364 Membrane protein invol 61.3 86 0.0019 25.3 9.0 24 549-572 75-98 (149)
390 PF07163 Pex26: Pex26 protein; 60.3 1.4E+02 0.0031 27.6 13.9 87 340-426 90-181 (309)
391 KOG2300 Uncharacterized conser 59.7 2E+02 0.0043 29.0 40.9 432 125-568 15-550 (629)
392 PF09670 Cas_Cas02710: CRISPR- 59.4 1.1E+02 0.0025 30.2 10.8 56 125-181 139-198 (379)
393 KOG2659 LisH motif-containing 58.4 1.2E+02 0.0026 27.1 9.4 102 435-536 23-131 (228)
394 KOG1308 Hsp70-interacting prot 57.3 16 0.00034 34.4 4.1 84 450-536 126-210 (377)
395 KOG0686 COP9 signalosome, subu 56.9 2E+02 0.0044 28.2 15.0 42 437-480 305-351 (466)
396 KOG4521 Nuclear pore complex, 56.3 3.3E+02 0.0072 31.0 13.8 159 123-286 926-1125(1480)
397 PF08424 NRDE-2: NRDE-2, neces 56.0 1.9E+02 0.0042 27.8 17.9 118 385-504 48-185 (321)
398 KOG4279 Serine/threonine prote 56.0 1.9E+02 0.0042 30.8 11.6 24 557-587 378-401 (1226)
399 PRK10941 hypothetical protein; 55.9 1.7E+02 0.0038 27.2 10.8 67 115-182 179-245 (269)
400 PF12862 Apc5: Anaphase-promot 55.3 68 0.0015 23.9 6.7 53 484-536 9-69 (94)
401 PF04910 Tcf25: Transcriptiona 55.2 2.2E+02 0.0047 28.0 18.0 106 479-593 109-234 (360)
402 KOG0545 Aryl-hydrocarbon recep 54.6 1.4E+02 0.0031 27.0 9.1 53 516-572 238-291 (329)
403 PF09986 DUF2225: Uncharacteri 54.6 82 0.0018 28.1 8.1 50 56-105 141-195 (214)
404 PF14689 SPOB_a: Sensor_kinase 54.5 22 0.00048 24.1 3.5 23 549-571 27-49 (62)
405 KOG2062 26S proteasome regulat 54.2 3.1E+02 0.0066 29.5 33.0 117 449-571 512-632 (929)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 54.1 1.1E+02 0.0024 24.4 9.0 44 491-534 81-125 (126)
407 PF14689 SPOB_a: Sensor_kinase 54.0 30 0.00064 23.5 4.1 45 490-536 7-51 (62)
408 cd00280 TRFH Telomeric Repeat 53.9 90 0.002 26.7 7.5 48 419-466 85-139 (200)
409 KOG0376 Serine-threonine phosp 53.7 21 0.00045 35.4 4.5 96 449-552 15-112 (476)
410 KOG0376 Serine-threonine phosp 53.3 47 0.001 33.0 6.7 98 55-163 19-116 (476)
411 PF12069 DUF3549: Protein of u 52.9 2.2E+02 0.0048 27.4 12.6 118 479-608 172-290 (340)
412 COG5159 RPN6 26S proteasome re 52.1 2E+02 0.0043 26.7 20.7 21 373-393 130-150 (421)
413 COG0790 FOG: TPR repeat, SEL1 52.1 2.1E+02 0.0045 26.9 24.0 15 453-467 206-220 (292)
414 cd08819 CARD_MDA5_2 Caspase ac 51.7 94 0.002 22.8 6.6 67 135-213 20-86 (88)
415 PF00244 14-3-3: 14-3-3 protei 51.7 1.1E+02 0.0023 27.9 8.5 58 373-430 6-64 (236)
416 PF11848 DUF3368: Domain of un 51.5 61 0.0013 20.6 5.2 33 484-516 13-45 (48)
417 PF11846 DUF3366: Domain of un 51.1 82 0.0018 27.5 7.6 32 505-536 141-172 (193)
418 KOG1114 Tripeptidyl peptidase 51.0 3.9E+02 0.0084 29.7 14.0 48 265-312 1233-1281(1304)
419 KOG2422 Uncharacterized conser 50.7 3.1E+02 0.0067 28.5 16.3 107 480-593 349-460 (665)
420 KOG1308 Hsp70-interacting prot 50.5 8.7 0.00019 36.1 1.4 51 130-181 127-177 (377)
421 PF09670 Cas_Cas02710: CRISPR- 50.4 2.7E+02 0.0057 27.6 12.1 18 345-362 143-160 (379)
422 KOG2063 Vacuolar assembly/sort 50.3 4E+02 0.0087 29.7 20.9 27 230-256 506-532 (877)
423 PF12862 Apc5: Anaphase-promot 49.7 83 0.0018 23.5 6.4 53 449-501 9-69 (94)
424 PF11663 Toxin_YhaV: Toxin wit 49.2 26 0.00057 28.0 3.6 33 203-237 105-137 (140)
425 KOG2659 LisH motif-containing 48.9 2E+02 0.0043 25.8 10.1 103 399-501 22-131 (228)
426 COG2909 MalT ATP-dependent tra 48.4 4.1E+02 0.0089 29.3 37.0 230 343-572 425-686 (894)
427 KOG1839 Uncharacterized protei 48.4 2.6E+02 0.0056 32.2 11.9 122 55-181 947-1086(1236)
428 COG4941 Predicted RNA polymera 48.0 2.6E+02 0.0056 26.8 11.3 122 91-222 272-394 (415)
429 PF00244 14-3-3: 14-3-3 protei 47.9 2.2E+02 0.0047 25.9 10.2 59 337-395 5-64 (236)
430 KOG3824 Huntingtin interacting 47.6 38 0.00083 31.4 4.8 52 484-536 127-178 (472)
431 KOG0545 Aryl-hydrocarbon recep 46.6 2.3E+02 0.0049 25.8 10.8 106 76-182 179-294 (329)
432 COG1747 Uncharacterized N-term 46.4 3.4E+02 0.0074 27.7 24.9 166 295-467 63-234 (711)
433 PF03745 DUF309: Domain of unk 45.9 74 0.0016 21.6 5.0 45 54-98 13-62 (62)
434 COG0735 Fur Fe2+/Zn2+ uptake r 45.7 1.4E+02 0.0029 24.7 7.6 48 287-335 10-57 (145)
435 PF09477 Type_III_YscG: Bacter 45.5 1.4E+02 0.003 23.0 9.3 79 418-503 21-99 (116)
436 PF09477 Type_III_YscG: Bacter 44.7 1.4E+02 0.0031 22.9 10.3 85 49-147 15-99 (116)
437 PRK10564 maltose regulon perip 44.3 45 0.00098 31.1 4.9 33 266-298 260-292 (303)
438 PF11848 DUF3368: Domain of un 43.7 84 0.0018 19.9 5.0 30 275-304 14-43 (48)
439 cd08819 CARD_MDA5_2 Caspase ac 43.7 1.3E+02 0.0028 22.1 6.9 14 312-325 50-63 (88)
440 COG4976 Predicted methyltransf 42.9 54 0.0012 29.2 4.8 51 485-536 7-57 (287)
441 PF11817 Foie-gras_1: Foie gra 42.7 1.3E+02 0.0028 27.6 7.8 50 125-174 186-240 (247)
442 PF02184 HAT: HAT (Half-A-TPR) 41.7 48 0.001 18.9 2.9 23 524-550 3-25 (32)
443 COG5187 RPN7 26S proteasome re 41.3 3E+02 0.0065 25.7 12.7 97 263-361 115-220 (412)
444 PF10255 Paf67: RNA polymerase 41.2 2E+02 0.0043 28.6 9.0 99 436-534 73-190 (404)
445 PF13929 mRNA_stabil: mRNA sta 41.1 3.1E+02 0.0067 25.7 19.3 64 400-463 199-263 (292)
446 cd00280 TRFH Telomeric Repeat 40.9 2.2E+02 0.0048 24.5 7.9 20 482-501 120-139 (200)
447 COG0790 FOG: TPR repeat, SEL1 40.5 3.2E+02 0.0069 25.7 23.7 149 206-363 54-221 (292)
448 KOG2063 Vacuolar assembly/sort 40.2 5.7E+02 0.012 28.6 20.1 109 413-521 601-745 (877)
449 PF11663 Toxin_YhaV: Toxin wit 39.8 24 0.00051 28.3 2.1 35 554-593 104-138 (140)
450 PF07720 TPR_3: Tetratricopept 39.0 75 0.0016 18.7 3.7 23 547-569 3-25 (36)
451 PF15469 Sec5: Exocyst complex 37.7 1.1E+02 0.0024 26.3 6.3 24 513-536 91-114 (182)
452 PHA02537 M terminase endonucle 37.6 3E+02 0.0065 24.9 8.8 133 425-585 70-211 (230)
453 PF13929 mRNA_stabil: mRNA sta 37.4 3.5E+02 0.0077 25.3 20.1 98 190-287 161-262 (292)
454 COG0735 Fur Fe2+/Zn2+ uptake r 37.3 1.5E+02 0.0033 24.4 6.6 29 234-262 26-54 (145)
455 PRK10564 maltose regulon perip 37.0 67 0.0014 30.0 4.8 30 231-260 260-289 (303)
456 PF04762 IKI3: IKI3 family; I 36.9 5.4E+02 0.012 29.3 12.7 213 303-534 699-927 (928)
457 COG5108 RPO41 Mitochondrial DN 36.8 2.8E+02 0.0061 29.2 9.3 75 157-238 33-113 (1117)
458 KOG2908 26S proteasome regulat 36.4 4E+02 0.0086 25.6 9.9 73 409-481 81-164 (380)
459 PF11817 Foie-gras_1: Foie gra 36.1 1.6E+02 0.0035 26.9 7.4 52 234-285 184-240 (247)
460 PF06957 COPI_C: Coatomer (COP 35.9 4.7E+02 0.01 26.3 11.2 172 79-277 122-349 (422)
461 PF12968 DUF3856: Domain of Un 35.7 2.2E+02 0.0048 22.5 7.3 88 54-142 23-125 (144)
462 PF15297 CKAP2_C: Cytoskeleton 35.5 4.1E+02 0.0089 25.7 9.6 64 489-556 119-186 (353)
463 KOG4279 Serine/threonine prote 35.4 6.1E+02 0.013 27.5 16.1 24 517-544 375-398 (1226)
464 KOG1839 Uncharacterized protei 35.1 5.8E+02 0.013 29.6 12.1 158 127-284 942-1120(1236)
465 KOG3807 Predicted membrane pro 34.9 4.1E+02 0.0088 25.3 12.9 60 233-292 280-340 (556)
466 COG4976 Predicted methyltransf 34.8 1.3E+02 0.0028 26.9 5.9 56 126-182 4-59 (287)
467 KOG0991 Replication factor C, 34.7 3.5E+02 0.0076 24.5 12.2 25 155-179 133-157 (333)
468 KOG0292 Vesicle coat complex C 34.3 4.5E+02 0.0097 29.0 10.5 128 414-573 654-781 (1202)
469 TIGR01503 MthylAspMut_E methyl 32.7 5.4E+02 0.012 26.1 10.6 45 314-361 70-114 (480)
470 PRK13342 recombination factor 32.6 5.3E+02 0.011 25.9 17.9 159 55-221 152-333 (413)
471 KOG4567 GTPase-activating prot 31.9 4.5E+02 0.0097 24.9 9.5 43 319-361 264-306 (370)
472 KOG1498 26S proteasome regulat 31.9 5.1E+02 0.011 25.5 15.3 161 55-222 47-241 (439)
473 PF13762 MNE1: Mitochondrial s 31.4 3E+02 0.0065 22.7 11.0 81 336-416 42-128 (145)
474 PF10366 Vps39_1: Vacuolar sor 31.0 2.5E+02 0.0054 21.7 8.4 27 230-256 41-67 (108)
475 KOG4567 GTPase-activating prot 30.0 4.9E+02 0.011 24.7 9.4 56 354-414 264-319 (370)
476 KOG4521 Nuclear pore complex, 30.0 9.1E+02 0.02 27.9 14.0 125 265-392 985-1126(1480)
477 COG4941 Predicted RNA polymera 29.9 5.1E+02 0.011 24.9 10.1 20 552-571 372-391 (415)
478 PF04190 DUF410: Protein of un 28.4 4.8E+02 0.01 24.2 17.0 83 150-257 88-170 (260)
479 PRK11639 zinc uptake transcrip 27.8 3.8E+02 0.0083 22.8 8.0 34 312-345 39-72 (169)
480 COG5108 RPO41 Mitochondrial DN 27.7 4.3E+02 0.0093 28.0 8.9 90 408-500 33-130 (1117)
481 COG4259 Uncharacterized protei 27.7 2.7E+02 0.0059 21.1 6.8 52 493-548 57-108 (121)
482 KOG2297 Predicted translation 27.6 5.3E+02 0.012 24.4 16.3 73 415-493 267-341 (412)
483 PF09454 Vps23_core: Vps23 cor 27.2 1.2E+02 0.0026 20.8 3.7 51 149-206 5-55 (65)
484 PF07575 Nucleopor_Nup85: Nup8 27.1 7.8E+02 0.017 26.1 22.9 76 353-430 390-465 (566)
485 PF08311 Mad3_BUB1_I: Mad3/BUB 27.0 3.3E+02 0.0071 21.8 10.6 43 246-288 81-124 (126)
486 PF09454 Vps23_core: Vps23 cor 26.6 1.7E+02 0.0036 20.2 4.3 46 472-518 7-52 (65)
487 KOG3807 Predicted membrane pro 26.3 5.8E+02 0.013 24.4 13.3 104 132-256 231-339 (556)
488 PF10475 DUF2450: Protein of u 26.0 5.7E+02 0.012 24.2 11.3 53 198-256 103-155 (291)
489 PRK13800 putative oxidoreducta 25.9 1E+03 0.022 27.1 27.9 260 260-553 632-892 (897)
490 COG3107 LppC Putative lipoprot 25.8 7.6E+02 0.016 25.6 13.2 104 59-169 47-153 (604)
491 PRK09462 fur ferric uptake reg 25.5 3.9E+02 0.0084 22.0 7.4 22 314-335 33-54 (148)
492 KOG2034 Vacuolar sorting prote 25.4 9.6E+02 0.021 26.6 28.6 48 125-178 366-415 (911)
493 PF10255 Paf67: RNA polymerase 25.3 6.9E+02 0.015 25.0 14.9 58 122-179 127-191 (404)
494 PHA02875 ankyrin repeat protei 24.8 7E+02 0.015 24.9 16.6 181 200-402 39-229 (413)
495 KOG1114 Tripeptidyl peptidase 24.6 1E+03 0.023 26.7 15.0 130 419-571 1163-1292(1304)
496 COG5071 RPN5 26S proteasome re 24.5 6E+02 0.013 23.9 10.9 130 54-184 46-203 (439)
497 KOG0551 Hsp90 co-chaperone CNS 23.9 6.6E+02 0.014 24.2 9.8 56 446-501 89-147 (390)
498 PF10516 SHNi-TPR: SHNi-TPR; 23.6 1.7E+02 0.0038 17.4 3.6 28 546-573 2-29 (38)
499 KOG1662 Mitochondrial F1F0-ATP 23.5 4.4E+02 0.0095 23.0 6.9 16 449-464 46-61 (210)
500 smart00777 Mad3_BUB1_I Mad3/BU 23.4 3.9E+02 0.0085 21.4 9.1 41 527-569 82-123 (125)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-71 Score=601.02 Aligned_cols=545 Identities=23% Similarity=0.372 Sum_probs=503.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
..+.++..+++.| +++.|.++|++| +.||+.+|+.++.+|.+.|++++|+.+|++|...|+.||..+|+.++.+
T Consensus 123 ~~n~li~~~~~~g--~~~~A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 123 LGNAMLSMFVRFG--ELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred HHHHHHHHHHhCC--ChHHHHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 3467788888887 999999999999 5689999999999999999999999999999999999999999999988
Q ss_pred hh----------------------------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 040279 120 FG----------------------------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVA 171 (626)
Q Consensus 120 ~~----------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 171 (626)
|+ .++.+|++.|++++|..+|++|. .||..+|+.+|.+|++.|++++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHH
Confidence 74 56788899999999999999986 46888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 040279 172 LRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
+++|++|...+ +.||..+|+.++.++.+.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|
T Consensus 273 l~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 273 LELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred HHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999888 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 040279 252 IEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH 331 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (626)
++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.+
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 9985 468889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|..+|++|.. +++||..||+.++.
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 999999999999999999999999998864 5788999999999999999999999999986 58999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+|++.|.++.+.+++..+.+.|+.++..+++.++++|++.|++++|.++|+.+ .||..+|++++.+|++.|+.++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999998 4799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ ..|+.|+..+|..++++|.+.|++++|.+++++|
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~-~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE-KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999994 3899999999999999999999999999999998
Q ss_pred HhhccccccccCCc--hhhhhhhheeccCCccch----hccccCCCCCCchhHHHHHHh
Q 040279 572 YRACLYVTIFQPSS--LGSMIGCTVRLMPQPEMS----DTLGDDGDGNAGPIILSAVLL 624 (626)
Q Consensus 572 ~~~~~~~~~~~p~~--~~~l~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~ 624 (626)
+..|+. |.+++++| +.+++.+.+ ++++++.|+++++|++++.++
T Consensus 652 --------~~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 652 --------PITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred --------CCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 567776 99999987 889997765 567789999999999998775
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-66 Score=549.78 Aligned_cols=519 Identities=16% Similarity=0.253 Sum_probs=486.1
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQP-SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
.....++..+++.| ++++|+++|++|.+.+. .++...++.++.+|.+.|.+++|..+|+.|. .|+..+|+.+|
T Consensus 371 ~~~~~~y~~l~r~G--~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL 444 (1060)
T PLN03218 371 PEYIDAYNRLLRDG--RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLM 444 (1060)
T ss_pred hHHHHHHHHHHHCc--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHH
Confidence 33556667788876 99999999999998875 4677788889999999999999999999997 49999999998
Q ss_pred HhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH
Q 040279 118 NCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS 197 (626)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (626)
. ++++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+ +.||..+|+
T Consensus 445 ~-------a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTyn 511 (1060)
T PLN03218 445 S-------VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFG 511 (1060)
T ss_pred H-------HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHH
Confidence 6 557889999999999999999999999999999999999999999999999999988 789999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHh
Q 040279 198 IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD--LGPRPNLLTFNVMIDCLCK 275 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 275 (626)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 6789999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 040279 276 GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSL 355 (626)
Q Consensus 276 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 355 (626)
.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 356 YRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE 435 (626)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (626)
+++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----c-------------------CCHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----K-------------------GKLEKA 492 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A 492 (626)
||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999866432 1 224679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+|++|.+.|+.||..||+.++.++...+..+.+..+++.|.. .+..|+..+|..+++.+.+. .++|..++++|.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~--~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI--SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc--CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999999999999999999999888889999999999999887 67888999999999987332 368999999999
Q ss_pred hhcccccc
Q 040279 573 RACLYVTI 580 (626)
Q Consensus 573 ~~~~~~~~ 580 (626)
..++.+..
T Consensus 908 ~~Gi~p~~ 915 (1060)
T PLN03218 908 SLGVVPSV 915 (1060)
T ss_pred HcCCCCCc
Confidence 88776644
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-64 Score=532.14 Aligned_cols=499 Identities=21% Similarity=0.308 Sum_probs=464.7
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC
Q 040279 71 PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLL-PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR 149 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (626)
+.++...|..+...+.+.|++++|+++|++|.+.|+. ++..+++.++. .+.+.|.+++|..+|+.|..
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~-------~~~~~g~~~eAl~lf~~M~~---- 434 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-------ACKKQRAVKEAFRFAKLIRN---- 434 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-------HHHHCCCHHHHHHHHHHcCC----
Confidence 4457788999999999999999999999999998864 55566666654 56778999999999999874
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc
Q 040279 150 PDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229 (626)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (626)
|+..+|+.++.+|++.|+++.|.++|++|.+.+ ..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 899999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCHhhHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQ--RGLNPDRFTYNSLMDG 307 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~ 307 (626)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 5789999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYA 387 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 387 (626)
|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (626)
.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...++.|+..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCH
Q 040279 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----N-------------------NKT 524 (626)
Q Consensus 468 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~ 524 (626)
|+.||..+|+.++.+|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 99999999999999999999999999999999999999999999999876432 1 234
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc--hhhhhhhh
Q 040279 525 SKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS--LGSMIGCT 593 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~l~~~~ 593 (626)
++|..+|++|++ .|+.||..+|..++.++.+.+..+.+...++.+... +..|+. +.+++..+
T Consensus 829 ~~Al~lf~eM~~--~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-----~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 829 SWALMVYRETIS--AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-----ADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-----CCCcchhhhHHHHHhh
Confidence 689999999999 999999999999999998999999999999887321 233332 66676654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-64 Score=547.60 Aligned_cols=551 Identities=21% Similarity=0.266 Sum_probs=456.5
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 040279 36 SPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNI 115 (626)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 115 (626)
++..+.+.++..+++.| ++++|..+|+.+...+..|+..+|..++..+.+.+.++.|..++..+.+.|..++...++.
T Consensus 49 ~~~~~~n~~i~~l~~~g--~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 49 SSTHDSNSQLRALCSHG--QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cchhhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34555788899999987 8999999999999888778888887777777777777777777777776666666666666
Q ss_pred HHHhhh------------------------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 040279 116 LINCFG------------------------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVA 171 (626)
Q Consensus 116 ll~~~~------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 171 (626)
++.+|+ .++.+|++.|++++|+.+|++|...|+.||..||+.++.+|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 666543 44567788888999999999998888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 040279 172 LRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
.+++..+.+.+ ..++..+++.|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|
T Consensus 207 ~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 207 REVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred HHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 88888888877 678888999999999999999999999999874 58889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 040279 252 IEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH 331 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (626)
++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. |
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 352 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K 352 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864 5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
|..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+++.|.++++.+.+.|+.|+..+|+.++.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+|++.|++++|.++|++|. .+|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 9999999999999888876 34667788888888888888888888888765 467777777666655555544444
Q ss_pred HHHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 040279 492 ANDFLLYMEKNGC------------------------------APNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL 541 (626)
Q Consensus 492 A~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (626)
+.+++..+.+.|+ .||..+|+.++.+|.+.|+.++|.++|++|.+ .|+
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~--~g~ 585 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVE--SGV 585 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC
Confidence 4444444444332 56888999999999999999999999999998 899
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc--hhhhhhhheeccCCccchhccccCCCCCC
Q 040279 542 VPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS--LGSMIGCTVRLMPQPEMSDTLGDDGDGNA 614 (626)
Q Consensus 542 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 614 (626)
.||..||..++.+|.+.|++++|.++|+.|.+. ....|+. +..++..+.+ .|+.+.|+.+++.-|-.+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~----~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK----YSITPNLKHYACVVDLLGR-AGKLTEAYNFINKMPITP 655 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH----hCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999621 1456765 6777766534 566666666666444333
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-60 Score=504.75 Aligned_cols=472 Identities=19% Similarity=0.273 Sum_probs=427.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIG-LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
.+..+|+.++..+.+.|++++|+.+|+.|...+ ..||..+|+.++.+ +.+.++++.|.+++..|.+.|+.||
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a-------~~~~~~~~~a~~l~~~m~~~g~~~~ 157 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEA-------CIALKSIRCVKAVYWHVESSGFEPD 157 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-------HHhCCCHHHHHHHHHHHHHhCCCcc
Confidence 456689999999999999999999999998754 67899999998864 4667888999999999999999999
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 9999999999999999999999999984 467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 311 (626)
+.++.++...|..+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998863 5888999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCCC
Q 040279 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ-KGLV 470 (626)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 470 (626)
++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9986 4788899999999999999999999999999999999999999999999999999999999999976 6889
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFS 549 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~ 549 (626)
|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|..+++++.+ +.|+ ..+|.
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~----~~p~~~~~y~ 532 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG----MGPEKLNNYV 532 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC----CCCCCCcchH
Confidence 99999999999999999999999988765 4689999999999999999999999999999877 6774 67899
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhhcc
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYRACL 576 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 576 (626)
.++++|.+.|++++|.++++.|.+.++
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999987765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-59 Score=498.47 Aligned_cols=471 Identities=18% Similarity=0.305 Sum_probs=446.4
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQ-PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
.++.++..+++.| ++++|+++|+.+...+ ..||..+|+.++.++.+.++++.|..++..|.+.|+.||..+++.++.
T Consensus 89 ~~~~~i~~l~~~g--~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACG--RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 6788899999887 9999999999998765 468999999999999999999999999999999999999999999984
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSI 198 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (626)
.|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+ ..|+..+|+.
T Consensus 167 -------~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ 229 (697)
T PLN03081 167 -------MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVV 229 (697)
T ss_pred -------HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHH
Confidence 6789999999999999996 4799999999999999999999999999999988 7899999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGK 278 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 278 (626)
++.++.+.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGY 305 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999995 4589999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 040279 279 INEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQ 358 (626)
Q Consensus 279 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (626)
+++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcC
Q 040279 359 IISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM-NKFEFG 437 (626)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 437 (626)
|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+
T Consensus 386 m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 386 MPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 964 689999999999999999999999999999999999999999999999999999999999999985 689999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
..+|+.++++|++.|++++|.+++++|. +.|+..+|++++.+|...|+++.|..+++++.+.+ +.+..+|..++..
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~ 537 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNL 537 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHH
Confidence 9999999999999999999999999874 57999999999999999999999999999998653 3346799999999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
|.+.|++++|.++++.|.+ .|+..
T Consensus 538 y~~~G~~~~A~~v~~~m~~--~g~~k 561 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKR--KGLSM 561 (697)
T ss_pred HHhCCCHHHHHHHHHHHHH--cCCcc
Confidence 9999999999999999998 77653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.4e-33 Score=311.57 Aligned_cols=534 Identities=14% Similarity=0.084 Sum_probs=349.4
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|...++.++...+. +...+..++..+.+.|++++|..+|+++.+. .|+....... ++..+...|+++
T Consensus 344 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~------l~~~~~~~~~~~ 414 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQ------LGISKLSQGDPS 414 (899)
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH------HHHHHHhCCChH
Confidence 555555555555444332 4445555555555555555555555555543 2332221111 123445556666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
+|+..++.+.+.. +........++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+
T Consensus 415 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 415 EAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-------PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666655543 1123344445555666666666666666665543 4556666777777777777777777
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL 294 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 294 (626)
.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.++. +..++..+...+...|+.++|...++++.+.+
T Consensus 487 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 563 (899)
T TIGR02917 487 AFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN- 563 (899)
T ss_pred HHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777766543 334455666667777777777777777777665432 55666777777777777777777777776653
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 295 NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTL 374 (626)
Q Consensus 295 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 374 (626)
+.+...+..++..+...|++++|..+++.+.... +.+...|..+..++...|++++|+..|+++.+.. +.+...+..+
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3345566667777777777777777777776653 3356677777777777888888888887777653 3355666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRL 454 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (626)
...+...|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 777777788888888887777643 4456677777777778888888888887777665 45666777777778888888
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
++|.+.|+++... .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++
T Consensus 720 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 8888888887775 3455667777778888888888888888887763 556677777788888888888888888888
Q ss_pred hcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhhhhhheeccCCc----cchhccccC
Q 040279 535 AEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCTVRLMPQP----EMSDTLGDD 609 (626)
Q Consensus 535 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~----~~~~~~~~~ 609 (626)
++ ..| +...+..++..+...|+ .+|.++++++... .+..|..+.. ++.+....++. +..+++++.
T Consensus 797 ~~----~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 797 VK----KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL----APNIPAILDT-LGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HH----hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh----CCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77 444 56677788888888888 7788888887532 1222332322 23333444543 334677788
Q ss_pred CCCCCchhHHHHHHhh
Q 040279 610 GDGNAGPIILSAVLLI 625 (626)
Q Consensus 610 ~p~~~~~~~~~~~~~~ 625 (626)
.|+++..+..++.+++
T Consensus 867 ~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 867 APEAAAIRYHLALALL 882 (899)
T ss_pred CCCChHHHHHHHHHHH
Confidence 8888888777776653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-32 Score=305.54 Aligned_cols=470 Identities=13% Similarity=0.065 Sum_probs=251.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
.+...|++++|...++.+.... +.+...+..+...+.+.|++++|.+.|+++.+.+ +.+...+..+...+..
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-------PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHh
Confidence 3444455555555555544432 2234444455555555555555555555554433 2233334444444444
Q ss_pred cCCcchHHHHHHHHhhCC---------------------------------CCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRG---------------------------------INPAVVVCTTLIHGFCCAGNWEEVNGLFI 252 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 252 (626)
.|++++|.+.++.+.+.. .+.+..++..+...+...|++++|.+.|+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444444443321 12234445555555555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 040279 253 EMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHT 332 (626)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 332 (626)
++.+..+. +...+..+...+...|++++|...++.+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+
T Consensus 490 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 490 KALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 55443221 33344444555555555555555555555442 2234445555555555555555555555554443 223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..++..+...|++++|..+++++.+. .+.+...|..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 444555555556666666666666665543 23345556666666666666666666666665432 3344455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+.+.|++++|..+++++.... +.+...+..++..+...|++++|.++++.+.+.+ +++...+..++..+...|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666655443 3445566666666666666666666666665543 33455566666666666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.+.|+++.+. .|+..++..++.++.+.|++++|.+.++++.+ ..| +...+..++..+.+.|++++|.+.|+++
T Consensus 723 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 723 IQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK----THPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 7777766664 34445566666666677777777777777665 334 4556666677777777777777777776
Q ss_pred HhhccccccccCCc---hhhhhhhheeccCC---ccchhccccCCCCCCchhHHHHHHh
Q 040279 572 YRACLYVTIFQPSS---LGSMIGCTVRLMPQ---PEMSDTLGDDGDGNAGPIILSAVLL 624 (626)
Q Consensus 572 ~~~~~~~~~~~p~~---~~~l~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~ 624 (626)
.. ..|+. +..+... ....++ .+..++++++.|+++..+..++.++
T Consensus 797 ~~-------~~p~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 797 VK-------KAPDNAVVLNNLAWL-YLELKDPRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HH-------hCCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 52 23332 2222111 122222 3334566667777776666555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.7e-25 Score=247.69 Aligned_cols=546 Identities=12% Similarity=0.030 Sum_probs=356.2
Q ss_pred CCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 35 SSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
+.+.+.+...+...-..+ +.+.|.+.++++....|. ++.++..++..+.+.|+.++|...++++.+. .|+...+.
T Consensus 25 ~~~~~~Ll~q~~~~~~~~--~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~ 99 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATH--REDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYR 99 (1157)
T ss_pred CCHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHH
Confidence 344444555555555554 999999999999988776 7888999999999999999999999999987 56654443
Q ss_pred HHHHhh----------hhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040279 115 ILINCF----------GNKERGLCVENRIKEATWLFKNMIAFGVRPDVI-TYGTLINGFCRTGNLSVALRLHKKMVSGDY 183 (626)
Q Consensus 115 ~ll~~~----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 183 (626)
.+.... -..++.+...|++++|++.|+++.+.+ +|+.. ....+.......|+.++|++.++++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~- 177 (1157)
T PRK11447 100 SSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY- 177 (1157)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-
Confidence 211110 123456788999999999999998764 33432 22222223335699999999999999886
Q ss_pred CCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC----------------C----------------CCcchH
Q 040279 184 ENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI----------------N----------------PAVVVC 231 (626)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------~----------------~~~~~~ 231 (626)
|.+...+..+...+...|+.++|++.++++..... . |+....
T Consensus 178 ------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 178 ------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred ------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 66788888999999999999999999998754310 0 010000
Q ss_pred ---------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 232 ---------------------TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 232 ---------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
......+...|++++|+..|++.++..+. +...+..+..++.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01134456789999999999999886443 67788889999999999999999999988
Q ss_pred hcCCCCC-HhhH------------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 291 QRGLNPD-RFTY------------NSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYR 357 (626)
Q Consensus 291 ~~~~~~~-~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (626)
+...... ...+ ......+.+.|++++|...|+++.+... .+...+..+..++...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7643211 1111 1224466788999999999999988743 356677778889999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHH------------------------------------------HHHcCCHHHHHHHHHHHH
Q 040279 358 QIISNGVRQTVITYNTLLSG------------------------------------------LFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~------------------------------------------~~~~~~~~~a~~~~~~~~ 395 (626)
++.+.. +.+...+..+... +...|++++|.+.+++..
T Consensus 410 ~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 410 QALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 988753 2233333333333 334455556666665555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh-
Q 040279 396 LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVV- 474 (626)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 474 (626)
+.. +.+...+..+...|.+.|++++|...++++.... +.+...+..+...+...++.++|+..++.+......++..
T Consensus 489 ~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 489 ALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 432 2233444555555666666666666666555432 2233333333333444555555555555543321111111
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CH
Q 040279 475 --------TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DD 545 (626)
Q Consensus 475 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~ 545 (626)
.+..++..+...|+.++|.++++ . .+.+...+..+...+.+.|++++|+..|+++++ ..| +.
T Consensus 567 l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~----~~P~~~ 637 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT----REPGNA 637 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH
Confidence 11223444556666666666655 1 244555667777788888888888888888887 566 46
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhh--hhhhheeccCCccch----hccccCCCCCC
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGS--MIGCTVRLMPQPEMS----DTLGDDGDGNA 614 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~--l~~~~~~~~~~~~~~----~~~~~~~p~~~ 614 (626)
..+..++.+|...|++++|.+.++++. ...|+.... .++.++...++.+.| +++.+..|+++
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll-------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLP-------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh-------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 777888888888888888888888775 234443222 123333344553333 55555666554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.5e-24 Score=241.74 Aligned_cols=493 Identities=11% Similarity=0.005 Sum_probs=322.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|.+.|+.++...|.................|++++|+..++++.+. .|+.......+ +..+...|+++
T Consensus 127 ~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~L------A~ll~~~g~~~ 198 (1157)
T PRK11447 127 RTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTL------ALLLFSSGRRD 198 (1157)
T ss_pred CHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHH------HHHHHccCCHH
Confidence 78888888887776544322111111112223457778888888887765 55554443333 35667777777
Q ss_pred HHHHHHHHHHHCCC------------------C--------------CCHh---------------------HHHHHHHH
Q 040279 135 EATWLFKNMIAFGV------------------R--------------PDVI---------------------TYGTLING 161 (626)
Q Consensus 135 ~A~~~~~~~~~~~~------------------~--------------~~~~---------------------~~~~li~~ 161 (626)
+|+..++++..... . |+.. ........
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 77777777644210 0 0000 00122455
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC-CcchHH--------
Q 040279 162 FCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP-AVVVCT-------- 232 (626)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-------- 232 (626)
+...|++++|+..|++.++.+ |.+...+..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 677899999999999999876 6678899999999999999999999999988763211 111121
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040279 233 ----TLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGY 308 (626)
Q Consensus 233 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 308 (626)
.....+.+.|++++|+..|+++++..+. +...+..+...+...|++++|++.|+++.+... .+...+..+...+
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 2244667899999999999999987543 666788889999999999999999999987632 2333343333333
Q ss_pred ------------------------------------------HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040279 309 ------------------------------------------CLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346 (626)
Q Consensus 309 ------------------------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (626)
...|++++|++.|++..+.... +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3445555555555555554321 334444555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcC
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLS---------TYNILIDGLCKNN 417 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g 417 (626)
|++++|+..++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555555555432 1223333333334445555555555555443221111111 1123344566677
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++.++...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777661 25566677888889999999999999999998863 3357888899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 498 YMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP---DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.+.+.. +.+..++..+..++...|++++|.+++++++.....-.| +...+..++.++...|++++|.+.|++++.
T Consensus 662 ~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 887752 334566777888888999999999999998871111122 224566778889999999999999999864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.8e-22 Score=214.58 Aligned_cols=531 Identities=11% Similarity=0.007 Sum_probs=332.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
++.+......|++++|+..|+.+++..|. +..++..++..|.+.|++++|+..+++..+. .|+...+..++..
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~---- 120 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAA---- 120 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHH----
Confidence 44444433336999999999999999887 5899999999999999999999999999987 6766666655531
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCccccccHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLING--------FCRTGNLSVALRLHKKMVSGDYENGLISKTNIFS 195 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (626)
.+++++|..+++++.+.. +-+..++..+... |.+. ++|.+.++ ..... ..++..+
T Consensus 121 ------i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~------~~~~~~v 183 (987)
T PRK09782 121 ------IPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFA------ASPEGKT 183 (987)
T ss_pred ------hccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhC------CCCCcHH
Confidence 178889999999998873 3345555555554 4444 44444444 22211 1223443
Q ss_pred HHHH-HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 196 YSII-IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC-AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCL 273 (626)
Q Consensus 196 ~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (626)
.... ...|.+.|++++|++++.++.+.+ +.+......|...|.. .++ +++..+++.. .+.+...+..++..+
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~y 257 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATAL 257 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHH
Confidence 3433 778888888888888888888775 2344445566666666 355 6666664431 224666777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-CCHhhH------------------------------HHHHHHHH-------------
Q 040279 274 CKGGKINEANGLLELMIQRGLN-PDRFTY------------------------------NSLMDGYC------------- 309 (626)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~------------------------------~~ll~~~~------------- 309 (626)
.+.|+.++|.++++++...... |...++ ..++..+.
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 7777777777777665432111 111110 00122222
Q ss_pred --------------------------------------------------hcCChHHHHHHHHHHHhc-C-CCCChhhHH
Q 040279 310 --------------------------------------------------LVGRIDTAREIFLSMHSK-G-CKHTVVSYN 337 (626)
Q Consensus 310 --------------------------------------------------~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~ 337 (626)
+.|+.++|.++|+..... + ...+.....
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 334444444444444331 0 111222333
Q ss_pred HHHHHHHhcCC---hHHHHHH----------------------HHHHHHC-C-CCC--ChhhHHHHHHHHHHcCCHHHHH
Q 040279 338 ILINGYCKILN---VEEAMSL----------------------YRQIISN-G-VRQ--TVITYNTLLSGLFQAGQAGYAQ 388 (626)
Q Consensus 338 ~l~~~~~~~~~---~~~A~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 388 (626)
-++..|.+.+. ..++..+ ++..... + .++ +...+..+...+.. ++.++|.
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 44555554443 2222222 1111111 0 122 44555656655555 6777788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 040279 389 KLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG 468 (626)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (626)
..+...... .|+......+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+..
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 877776654 355444444455556788888888888877544 3444455666777888888888888888887753
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHH
Q 040279 469 LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTT 547 (626)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~ 547 (626)
+++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++++. +.|+ ...
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~~a 645 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNSNY 645 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHH
Confidence 223333333444445568888888888888875 46777888888888888888888888888888 6774 567
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhh--hhhheeccCCccc----hhccccCCCCCCchhHHHH
Q 040279 548 FSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSM--IGCTVRLMPQPEM----SDTLGDDGDGNAGPIILSA 621 (626)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l--~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~ 621 (626)
+..++.++...|++++|.+.++++. ...|+....+ ++.++...|+.+. .++++++.|+++......+
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL-------~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAH-------KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 7788888888888888888888886 3456553222 3444455566443 4677888888877665555
Q ss_pred HH
Q 040279 622 VL 623 (626)
Q Consensus 622 ~~ 623 (626)
.+
T Consensus 719 ~~ 720 (987)
T PRK09782 719 EQ 720 (987)
T ss_pred HH
Confidence 43
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=4e-24 Score=201.32 Aligned_cols=453 Identities=16% Similarity=0.128 Sum_probs=371.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
...|+.-..+.|++.+|.+-...+-+. .|.......+++ ..+.+..+.+....--...++.. +.-..+|+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~------ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn 121 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLS------AIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSN 121 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeeh------hhhhcccchhhhhhhhhhhhhcc-chHHHHHHH
Confidence 445677778899999999888776654 344333333433 46777777777766655555542 446788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH-HHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC-TTLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~ 236 (626)
+.+.+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.... ..+..
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 9999999999999999999999986 677889999999999999999999999999886 4554433 33555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD-RFTYNSLMDGYCLVGRID 315 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~ 315 (626)
.+-..|+.++|...+.+.++..+. =...|..+...+-.+|+...|+..|++..+.+ |+ ...|..|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcch
Confidence 556789999999999999886432 35578999999999999999999999998863 33 467888999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040279 316 TAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (626)
.|...+.+..... +.....+..+...|...|.+|-|+..|++.++.. +.-...|+.+..++-..|+..+|.+.|.+.+
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999998887763 2256778888888999999999999999999863 2245789999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-Hh
Q 040279 396 LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VV 474 (626)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 474 (626)
... +......+.|...+...|.+++|..+|....+.. +.-....+.|...|-++|++++|+..+++.+. +.|+ ..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 753 3345678889999999999999999999887654 44567789999999999999999999999988 5777 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVV 552 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~ 552 (626)
.|+.+...|...|+.+.|.+.+.+.+.. .|. ...++.|...|-..|+..+|+.-|+.+++ ++|| +..+..++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk----lkPDfpdA~cNll 497 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK----LKPDFPDAYCNLL 497 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc----cCCCCchhhhHHH
Confidence 8999999999999999999999999985 565 46889999999999999999999999998 8997 57788877
Q ss_pred HHHHccCCHhH
Q 040279 553 DLLAKDEKYHE 563 (626)
Q Consensus 553 ~~~~~~g~~~~ 563 (626)
.++.-..+|.+
T Consensus 498 h~lq~vcdw~D 508 (966)
T KOG4626|consen 498 HCLQIVCDWTD 508 (966)
T ss_pred HHHHHHhcccc
Confidence 77654444433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-24 Score=201.27 Aligned_cols=434 Identities=15% Similarity=0.126 Sum_probs=360.8
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+....+.|++++|++....+-..+ +.+......+-..+.+..+.+....--....+.. +.-..+|..+.+.+
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-------~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-------PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-------chHHHHHHHHHHHH
Confidence 355678899999999887766553 3344455556677777778887776666666554 56688999999999
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLT-FNVMIDCLCKGGKINEA 282 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a 282 (626)
...|++++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+... ...+....-..|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 99999999999999999874 336789999999999999999999999999885 444443 33455556678999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
...+.+.++.. +-=...|+.|...+...|+.-.|+..|++..+.+.. -...|-.+...|...+.++.|+..|.+....
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 99998888763 223467888888999999999999999999987422 3567888999999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD-LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIF 441 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (626)
. +.....+..+...|...|..+.|+..|++.++. .|+ ...|+.|..++...|++.+|...++...... +......
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 2 234577888888999999999999999999875 454 5689999999999999999999999988765 5567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFL 519 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 519 (626)
+.|...|...|.++.|..+|....+- .|. ...++.|...|.++|++++|+..|++.++ +.|+. ..++.+...|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999999883 455 66789999999999999999999999998 67875 58999999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCch
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSL 586 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~ 586 (626)
..|+.+.|++.+.+++. ++|. .+.+..|+.+|..+|...+|+.-|++++ ..+|..|+.+
T Consensus 434 e~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL----klkPDfpdA~ 493 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL----KLKPDFPDAY 493 (966)
T ss_pred HhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH----ccCCCCchhh
Confidence 99999999999999998 8996 5789999999999999999999999996 2344455543
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.6e-21 Score=205.77 Aligned_cols=501 Identities=12% Similarity=0.005 Sum_probs=317.8
Q ss_pred CCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 34 VSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
.|........+...+...| +.++|+..+++.++.+|. |...+..+... +++++|+.+++++.+. .|+....
T Consensus 74 dP~n~~~~~~LA~~yl~~g--~~~~A~~~~~kAv~ldP~-n~~~~~~La~i----~~~~kA~~~ye~l~~~--~P~n~~~ 144 (987)
T PRK09782 74 VPDNIPLTLYLAEAYRHFG--HDDRARLLLEDQLKRHPG-DARLERSLAAI----PVEVKSVTTVEELLAQ--QKACDAV 144 (987)
T ss_pred CCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCcc-cHHHHHHHHHh----ccChhHHHHHHHHHHh--CCCChhH
Confidence 3445555666666777766 999999999999998763 66666555332 9999999999999987 6665544
Q ss_pred HHHHHhh--hhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCcccc
Q 040279 114 NILINCF--GNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTL-INGFCRTGNLSVALRLHKKMVSGDYENGLISK 190 (626)
Q Consensus 114 ~~ll~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 190 (626)
..++... +.-.-.|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+++++++.+.+ +
T Consensus 145 ~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-------p 213 (987)
T PRK09782 145 PTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-------T 213 (987)
T ss_pred HHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-------C
Confidence 4443221 0000012222 33333333 2222122233333333 555666666666666666655544 2
Q ss_pred ccHHHHHHHHHHHHh-cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------
Q 040279 191 TNIFSYSIIIDSLCK-EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP---------- 259 (626)
Q Consensus 191 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------- 259 (626)
.+......|...|.. .++ +++..+++.. ++.+...+..+...|.+.|+.++|.++++++.....
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 223333333334433 233 3333332211 112333444444444444444444444433321100
Q ss_pred --------------------------------------------------------------------------------
Q 040279 260 -------------------------------------------------------------------------------- 259 (626)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (626)
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-CCCCHhhHHHHHHHHHhcCC---hHHHHHH----------
Q 040279 260 ----RPNLLTFNVMIDCLCKGGKINEANGLLELMIQR-G-LNPDRFTYNSLMDGYCLVGR---IDTAREI---------- 320 (626)
Q Consensus 260 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~---------- 320 (626)
+-+......+.-.....|+.++|.++++..... + ...+.....-++..|.+.+. ..++..+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 001111112222234556677777777766552 1 12233344466777777665 3333222
Q ss_pred ------------HHHHHhc-CC-CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 321 ------------FLSMHSK-GC-KH--TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 321 ------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
++..... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH
Confidence 1111111 11 23 56677777777776 8899999988888775 34544433445555789999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
++|...++++... +|+...+..+...+.+.|+.++|...++...... +.+...+..+.......|++++|...+++.
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998654 4555556677788899999999999999998765 334444444445555669999999999999
Q ss_pred ccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-
Q 040279 465 PQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP- 543 (626)
Q Consensus 465 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p- 543 (626)
.+. .|+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+..++++++ +.|
T Consensus 603 L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~----l~P~ 675 (987)
T PRK09782 603 LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK----GLPD 675 (987)
T ss_pred HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCC
Confidence 985 5678899999999999999999999999999974 55677888889999999999999999999998 778
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 544 DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 544 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...+..++.++...|++++|+..++++.
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57789999999999999999999999997
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.4e-21 Score=189.49 Aligned_cols=513 Identities=11% Similarity=0.072 Sum_probs=247.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 040279 42 NEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG 121 (626)
Q Consensus 42 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 121 (626)
.-+..+....+-+|+..|+.+|..++...|..-+...-.+...+.+.|+.+.|+..|+++++. .|+.+.....|+.+.
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHH
Confidence 333444444455699999999999887776533333444556778999999999999999976 554333333333221
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
-.+.....+..+..++...-... +-++.+.+.|..-|.-.|++..+..+.+.+...... -+.-...|..+.+
T Consensus 244 ---l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~----~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 244 ---LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN----KSIKAESFYQLGR 315 (1018)
T ss_pred ---HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHH
Confidence 11111223445555555544432 334555555666666666666666665555543210 0122334555566
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAV--VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGG-- 277 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 277 (626)
+|-..|++++|...|.+..+.. ++. ..+.-|...|.+.|+.+.+...|+.+.... +.+..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 6666666666666665555442 222 223334555556666666666666655542 224444555555554443
Q ss_pred --CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----hcCCCCChhhHHHHHHHHHhcCChHH
Q 040279 278 --KINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMH----SKGCKHTVVSYNILINGYCKILNVEE 351 (626)
Q Consensus 278 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (626)
..+.|..++....+.- +.|...|..+...+.... ...++..|..+. ..+..+.+...|.+...+...|+++.
T Consensus 393 ~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 2344444444444332 223444444433333222 222233333222 22223344445555555555555555
Q ss_pred HHHHHHHHHHC---CCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC------------------------
Q 040279 352 AMSLYRQIISN---GVRQTV------ITYNTLLSGLFQAGQAGYAQKLFDEMKLYN------------------------ 398 (626)
Q Consensus 352 A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 398 (626)
|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+..
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHH
Confidence 55555444432 001111 111223333334444444544444444321
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHH------------cCCHHH
Q 040279 399 ---------VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK-FEFGIEIFNCLIDGLCK------------AGRLDN 456 (626)
Q Consensus 399 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~ 456 (626)
...++..+..+...+.+...+..|.+-|+.+.+.. ..+|..+...|.+.|.. .+..++
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 12233333333444444444444444443333221 11333444444443322 223455
Q ss_pred HHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 457 AWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 457 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|+++|.++++.. +.|...-|-++-+++..|++.+|..+|.+..+.. .....+|..+.++|...|++..|++.|+...+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555542 2244444555555555566666666666555542 22344555555566666666666666655554
Q ss_pred CCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 537 PERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 537 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+.-.-+..+...|+.++.+.|++.+|.+++..+.
T Consensus 709 -kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 709 -KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred -HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12222245555555566666666666655555553
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=4e-20 Score=193.85 Aligned_cols=426 Identities=13% Similarity=0.023 Sum_probs=296.9
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
..+..+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++++++.+ +.+...+..+..
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~a~ 202 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHH
Confidence 4577889999999999999999876 6778889999999999999999999999999876 667888999999
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 281 (626)
+|...|++++|+.-|..+...+. .+......++..+.. ..+........+... ++...+..+...+ .......
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCc
Confidence 99999999999988877655421 111111222221111 223333333333322 2222333332222 1111111
Q ss_pred HHHHHHHHHhcCCCCCH-hhHHHHHHH---HHhcCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDR-FTYNSLMDG---YCLVGRIDTAREIFLSMHSKG--CKHTVVSYNILINGYCKILNVEEAMSL 355 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 355 (626)
...-+....+. .++. ..+..+... ....+++++|.+.|+...+.+ .+.....+..+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111111111 1111 111111111 123467889999999988764 122455677788888889999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 356 YRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE 435 (626)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (626)
+++.++.. +.....|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...|+...... +
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 99998763 2245677788888889999999999999988753 4457788888888999999999999999888765 5
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVV------ 509 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------ 509 (626)
.+...+..+..++.+.|++++|+..|++..+. .+.+...++.+..++...|++++|++.|++..+..-..+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 56777888888999999999999999998875 23357788889999999999999999999988753111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++.....+...|++++|.+++++++. +.|+ ...+..++.++...|++++|.++|+++.+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~----l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALI----IDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111222233446899999999999887 6675 45688889999999999999999999853
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.8e-19 Score=187.41 Aligned_cols=431 Identities=13% Similarity=0.016 Sum_probs=304.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYG 156 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (626)
.+...+..+.+.|++++|+..|+++++. .|+...+. .++.+|...|++++|+..++..++.. +.+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~-------n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~ 198 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYS-------NRAACHNALGDWEKVVEDTTAALELD-PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHH-------HHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 4557788899999999999999999876 56644332 23567888999999999999999874 44677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.+..++...|++++|+.-|..+...+ +.+......++..+.. ..+........+.. +++...+..+..
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~-------~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~ 266 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIID-------GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN 266 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH
Confidence 99999999999999999888776544 1111111222221111 12223333333321 223334443333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHhcC-C-CCCHhhHHHHHHHHHhc
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCL---CKGGKINEANGLLELMIQRG-L-NPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~ 311 (626)
|......+....-+.+..+.... ....+..+...+ ...+++++|...|+...+.+ . +.....+..+...+...
T Consensus 267 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 267 -YLQSFRPKPRPAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred -HHHHccCCcchhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 22222222222222221111111 011111111111 23478999999999998764 2 22445677788888899
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
|++++|+..++...+... .....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|
T Consensus 345 g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 345 GKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988742 245678888889999999999999999998863 446788888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
++..+.. +.+...+..+..++.+.|++++|+..|+...... +.+...++.+...+...|++++|++.|++........
T Consensus 423 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 423 QKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9998864 4456677788889999999999999999988654 5678889999999999999999999999988742211
Q ss_pred CH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 472 TV------VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 472 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+. ..++..+..+...|++++|.+++++..+.+ +.+...+..++..+.+.|++++|+++|+++.+
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11 112222333445799999999999998864 34456788999999999999999999999988
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-19 Score=180.48 Aligned_cols=465 Identities=14% Similarity=0.084 Sum_probs=351.7
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
.+..+...+...-...+. ++++.+.|...+.-.|++..+..+...+.... ..-...-..|-.++++|..+|+++
T Consensus 251 s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHH
Confidence 456666666666555444 67778888888888888888888888887531 111222234446789999999999
Q ss_pred HHHHHHHHHHHCCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC----C
Q 040279 135 EATWLFKNMIAFGVRPDVI--TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG----L 208 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~ 208 (626)
+|...|.+..+. .++.+ .+--++..+.+.|+++.+...|+.+.... |.+..+...|...|...+ .
T Consensus 325 kA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 325 KAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHH
Confidence 999999998876 44443 44567899999999999999999999876 777888888888888775 4
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEML----DLGPRPNLLTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 284 (626)
.+.|..++.+..+.- +.|...|..+...+...+-+.. +..|.... ..+..+.+...|.+...+...|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 566777777766653 4577788888887766655544 77666544 34445678889999999999999999999
Q ss_pred HHHHHHhc---CCCCCH------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHH
Q 040279 285 LLELMIQR---GLNPDR------FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVV-SYNILINGYCKILNVEEAMS 354 (626)
Q Consensus 285 ~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~ 354 (626)
.|+..... ...+|. .+-..+..+.-..++++.|.+.|..+.+. .|+-. .|-.++......++..+|..
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 99988765 122333 12233455666678999999999999987 23333 33333323334578889999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCCHHH
Q 040279 355 LYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN-VEPDLSTYNILIDGLCK------------NNCVQE 421 (626)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~ 421 (626)
.++.+... ...++..+..+...+.....+..|.+-|..+.+.- ..+|..+...|.+.|.+ .+..++
T Consensus 552 ~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 99998876 34467777777788999999999998777776532 23577777777776643 346778
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
|+++|.++.+.. |-|...-|.+.-+++..|++..|..+|.+..+... ....+|..++.+|..+|++..|+++|+...+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776 66888888999999999999999999999988632 3567899999999999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 502 N-GCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 502 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
. .-..+..+...|.+++.+.|.+.+|.+.+..+.. ..|..
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~----~~p~~ 749 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH----LAPSN 749 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hCCcc
Confidence 5 3344678899999999999999999999999987 66743
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.5e-20 Score=187.50 Aligned_cols=301 Identities=12% Similarity=0.098 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|...|+++++.+|. +..++..++..+.+.|++++|+.+++.+...+..++.... ..+..++..|...|+++
T Consensus 50 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL----LALQELGQDYLKAGLLD 124 (389)
T ss_pred ChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHHHHHHCCCHH
Confidence 666666666666665443 4556666666666666666666666666653211111111 11112345566666666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. .......+..+...+.+.|++++|.+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL--RVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666666542 33455666666666666666666666666655431000 00011223444555555666666666
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL 294 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 294 (626)
.|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.++.....+++.++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 666655442 22334455555555666666666666666554432222334455555555556666665555555554
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCh
Q 040279 295 NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK---ILNVEEAMSLYRQIISNGVRQTV 368 (626)
Q Consensus 295 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 368 (626)
.|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++.+.++.|++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 233334455555555555555555555555544 3445555554444442 33555555555555554443333
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=9.9e-19 Score=186.54 Aligned_cols=402 Identities=9% Similarity=-0.016 Sum_probs=237.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
+.....-.+.+....|+.++|++++++..... +.+...+..+...+...|++++|.+++++..+.. +.+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a 85 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDY 85 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 33334444555555566666665555555422 2334445555555555566666666665555442 223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
+..++..+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++.+... .+...+..+..++..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 455555555556666666666655554222 333 55555555555666666666666555421 133333444445555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCChh-hHH--
Q 040279 311 VGRIDTAREIFLSMHSKGCKHTV------VSYNILINGYC-----KILNV---EEAMSLYRQIISN-GVRQTVI-TYN-- 372 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~-- 372 (626)
.+..+.|++.++.+... |+. ......+.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 163 ~~~~e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 55555555555543321 110 01111111111 11223 6677777777753 1122211 111
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHH
Q 040279 373 --TLLSGLFQAGQAGYAQKLFDEMKLYNVE-PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF---GIEIFNCLID 446 (626)
Q Consensus 373 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 446 (626)
..+..+...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+.+....... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1133445668888888888888775421 322 22224667888888888888888876543111 1234555666
Q ss_pred HHHHcCCHHHHHHHHHhcccCCC-----------CCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGL-----------VPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
++...|++++|.++++++..... .|+ ...+..++..+...|++++|++.++++.... +.+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 77888888888888888776421 122 2245566778888899999999999988763 55677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.++..+...|++++|++.+++++. +.|+ ...+...+..+...|++++|+.+++++.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~----l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEV----LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888888899999999999999988 7785 5667777778888999999999999986
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.5e-18 Score=185.16 Aligned_cols=409 Identities=13% Similarity=-0.008 Sum_probs=311.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
.....|+.++|++++.+..... +.+...+..+..++.+.|++++|.+++++.++.. |.+...+..++..+..
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 4466899999999999998632 5566679999999999999999999999999876 6677888899999999
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (626)
.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..++|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998873 34555 888899999999999999999999997544 566667788888889999999998
Q ss_pred HHHHHhcCCCCCH------hhHHHHHHHHH-----hcCCh---HHHHHHHHHHHhc-CCCCChh-hHH----HHHHHHHh
Q 040279 286 LELMIQRGLNPDR------FTYNSLMDGYC-----LVGRI---DTAREIFLSMHSK-GCKHTVV-SYN----ILINGYCK 345 (626)
Q Consensus 286 ~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~ 345 (626)
++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 887654 2221 11122222222 12234 7788888888864 1222221 111 11334567
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHH
Q 040279 346 ILNVEEAMSLYRQIISNGVR-QTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEP---DLSTYNILIDGLCKNNCVQE 421 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 421 (626)
.+++++|+..|+++.+.+.+ |+. ....+...|...|++++|...|+.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987532 222 22335778999999999999999987643111 12445666778899999999
Q ss_pred HHHHHHHHHHCCC-----------CcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC
Q 040279 422 AVKLFHMLEMNKF-----------EFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG 487 (626)
Q Consensus 422 A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 487 (626)
|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..++..+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999999886531 122 2345667788899999999999999998863 445788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 040279 488 KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLL 555 (626)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 555 (626)
++++|++.++++.+.. +.+...+...+..+...|++++|...++++++ ..|+......+-..+
T Consensus 408 ~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~----~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA----REPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence 9999999999999963 44466777778889999999999999999998 788766555554443
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.4e-20 Score=184.83 Aligned_cols=302 Identities=13% Similarity=0.102 Sum_probs=163.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC---cchHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA---VVVCTTL 234 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 234 (626)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3445567778888888888887765 45566777777777788888888888777766421111 1345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----hhHHHHHHHHHh
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDR----FTYNSLMDGYCL 310 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~ 310 (626)
+..|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 677777777777777777776542 234556666777777777777777777776665322211 122333444445
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 040279 311 VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKL 390 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 390 (626)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+....
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------------- 248 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------------- 248 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------------
Confidence 555555555555554432 11233344444444444555555555444443311111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC
Q 040279 391 FDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV 470 (626)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (626)
..++..++.+|...|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .
T Consensus 249 ------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~ 312 (389)
T PRK11788 249 ------------SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--H 312 (389)
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence 2234444445555555555555555544432 23333344555555555555555555555443 3
Q ss_pred CCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 040279 471 PTVVTYSIMIHGLCR---KGKLEKANDFLLYMEKNGCAPN 507 (626)
Q Consensus 471 p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 507 (626)
|+..+++.++..+.. .|+.+++..+++++.+.++.|+
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 444445444444332 2355555555555554443333
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=8.7e-19 Score=182.88 Aligned_cols=326 Identities=12% Similarity=0.030 Sum_probs=160.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
...+.|++++|+.+++..+... +-+...+..++.+....|++++|+..++++...+ |.+...+..+...+.+
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHH
Confidence 3444555555555555555542 2233444444455555555555555555555544 4444455555555555
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (626)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 555555555555555431 223444555555555555555555555555443222 12222222 224455555555555
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 040279 286 LELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEE----AMSLYRQIIS 361 (626)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~ 361 (626)
++.+.+....++...+..+...+...|++++|...+++..+... .+...+..+...+...|++++ |+..++++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 55554442222222333334445555555555555555554432 234445555555555555553 4555555554
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 040279 362 NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIF 441 (626)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (626)
.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++.+.... +.+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 42 2234455555555555555555555555555432 2233344445555555555555555555555432 1122223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
..+..++...|+.++|...|+++.+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334445555555555555555544
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.3e-18 Score=181.45 Aligned_cols=333 Identities=15% Similarity=0.045 Sum_probs=213.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
.-.++..+.++|++++|..+++..+.. .|+.......+. ......|++++|+..|+++.... +.+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~------~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~ 115 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWV------ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLL 115 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHh------hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 344556667777777777777777765 444444433332 23455777777777777777663 334566677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~ 186 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LS 186 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HH
Confidence 7777777777777777777777654 4556667777777777777777777777665542 1122233232 33
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHH-
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDT- 316 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~- 316 (626)
+...|++++|...++.+++....++...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence 66677777777777777665433334444445566677777777777777777653 3345566667777777777764
Q ss_pred ---HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 040279 317 ---AREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDE 393 (626)
Q Consensus 317 ---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 393 (626)
|...|++..+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.
T Consensus 266 ~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6777777776542 255667777777777777777777777777653 22445566667777777777777777777
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 394 MKLYNVEPDL-STYNILIDGLCKNNCVQEAVKLFHMLEMNK 433 (626)
Q Consensus 394 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (626)
+... .|+. ..+..+..++...|+.++|...|++..+..
T Consensus 344 al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 344 LARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7654 2333 233334556677777777777777766543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=2e-17 Score=172.81 Aligned_cols=457 Identities=12% Similarity=0.032 Sum_probs=247.3
Q ss_pred CCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 35 SSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
|..+.+...-+....+.| +++.|+..|+++++..|...+.++ .++..+...|+.++|+..+++.. .|+...+.
T Consensus 31 p~~~~~~y~~aii~~r~G--d~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~ 103 (822)
T PRK14574 31 PAMADTQYDSLIIRARAG--DTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSR 103 (822)
T ss_pred ccchhHHHHHHHHHHhCC--CHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHH
Confidence 333344444444455655 888888888888887665333344 77777778888888888888887 45555555
Q ss_pred HHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHH
Q 040279 115 ILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 115 ~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
.++. ++..+...|++++|+++|+++++.. +.+...+..++..+...++.++|++.++++...+ |+..
T Consensus 104 ~lla----lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~ 170 (822)
T PRK14574 104 GLAS----AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQ 170 (822)
T ss_pred HHHH----HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchH
Confidence 4442 2356777788888888888888874 3356677777888888888888888888887765 3344
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
.+..++..+...++..+|++.++++.+.. +.+...+..+.....+.|-...|.++..+-... ..+...-+ +.
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~---l~--- 242 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ---LE--- 242 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH---HH---
Confidence 44444444444566656888888888773 335666777777888888888887766553321 11111100 00
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC-hhhH----HHHHHHHHhcCC
Q 040279 275 KGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK-GCKHT-VVSY----NILINGYCKILN 348 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~ 348 (626)
.+.+-+.. +.+..++..- . .+.--.+.|+.-++.+... +..|. ...| .-.+-++...++
T Consensus 243 ----~~~~a~~v----r~a~~~~~~~-~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 243 ----RDAAAEQV----RMAVLPTRSE-T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred ----HHHHHHHH----hhcccccccc-h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 00000000 0000000000 0 0000122233333333321 00111 1111 112334445555
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 349 VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN-----VEPDLSTYNILIDGLCKNNCVQEAV 423 (626)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~ 423 (626)
+.++++.|+.+...+.+....+-..+..+|...+++++|..+|+.+.... ..++......|..++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 55555555555555444334444555555555555555555555554321 1122223344555555555555555
Q ss_pred HHHHHHHHCCC-----------CcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCH
Q 040279 424 KLFHMLEMNKF-----------EFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKL 489 (626)
Q Consensus 424 ~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 489 (626)
.+++.+.+..+ .|+ ...+..++..+...|++.+|++.++++.... +-|......+...+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 55555554211 011 1223334455556666666666666665542 23455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+|++.++...... +-+..+....+.++...|++++|..+.++..+
T Consensus 467 ~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 467 RKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 66666665544431 22344555555566666666666666666655
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=2.3e-17 Score=172.26 Aligned_cols=450 Identities=13% Similarity=0.066 Sum_probs=323.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL--TLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 153 (626)
.+...-+....+.|+++.|+..|+++++. .|+.. .+ .++ ..+...|+.++|+..+++.... .+....
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll-------~l~~~~G~~~~A~~~~eka~~p-~n~~~~ 103 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWL-------QIAGWAGRDQEVIDVYERYQSS-MNISSR 103 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHH-------HHHHHcCCcHHHHHHHHHhccC-CCCCHH
Confidence 33344445678999999999999999876 56542 33 333 3455679999999999998832 122333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
....+...+...|++++|+++|+++.+.+ |.++..+..++..+...++.++|++.++++... .|+...+..
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~ 174 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMT 174 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHH
Confidence 34444668888999999999999999987 667788888888999999999999999999886 455555544
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGR 313 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 313 (626)
++..+...++..+|++.++++.+..+. +...+..++.+..+.|-...|.++..+- |+.++-...... +
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~ 242 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----E 242 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----H
Confidence 544444566666699999999987533 6777788888889999988888776653 222221111110 1
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCChhhH----HHHHHHHHHcCCHHHH
Q 040279 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN-G-VRQTVITY----NTLLSGLFQAGQAGYA 387 (626)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a 387 (626)
.+.|.+..+..... +... . .+..-.+.|+.-++.+... + .++....| .-.+-++...+++.++
T Consensus 243 ~~~~a~~vr~a~~~---~~~~--~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 243 RDAAAEQVRMAVLP---TRSE--T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred HHHHHHHHhhcccc---cccc--h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 12222222221111 0000 0 0111345666666666652 1 12221222 2345577889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK-----FEFGIEIFNCLIDGLCKAGRLDNAWELFH 462 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (626)
++.|+.+...+.+.-..+-..+.++|...+++++|..+++.+.... .+++......|.-+|...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999988765445678889999999999999999999987543 13345556788999999999999999999
Q ss_pred hcccCCC-----------CCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 463 KLPQKGL-----------VPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 463 ~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
++.+.-. .|+ ...+..++..+...|+..+|++.++++.... |-|......+...+...|.+.+|.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9987311 133 2344566778899999999999999998874 678889999999999999999999
Q ss_pred HHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 529 ELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+.++.+.. +.|+ ..+....+.++...|++++|..+.++...
T Consensus 471 ~~~k~a~~----l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 471 QELKAVES----LAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHhh----hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99988877 7885 56777888899999999999999977643
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.1e-17 Score=152.68 Aligned_cols=461 Identities=13% Similarity=0.070 Sum_probs=298.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC----
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD---- 151 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 151 (626)
.+...|.+.|..+..+.+|+..|+-+++....|+......-+ ++.+.+..++.+|++.|+-.+..-...+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmni------gni~~kkr~fskaikfyrmaldqvpsink~~r 275 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNI------GNIHFKKREFSKAIKFYRMALDQVPSINKDMR 275 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeee------cceeeehhhHHHHHHHHHHHHhhccccchhhH
Confidence 345557777888888999999999999988889887766544 5789999999999999998877621111
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc--
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV-- 229 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 229 (626)
...++.+...|.+.|+++.|+..|+...+.. |+..+-..|+-++...|+-++..+.|.+|...-..||..
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky 347 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc
Confidence 2346667778889999999999999998865 666666667777778899999999999998653222222
Q ss_pred ------hHHHHHHHHHhcCCH-----------HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 230 ------VCTTLIHGFCCAGNW-----------EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 230 ------~~~~li~~~~~~~~~-----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
.-..|+.--.++... ++++-.--+++.--+.|+.. . -.+-+++.++.....
T Consensus 348 i~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~ 415 (840)
T KOG2003|consen 348 IKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHA 415 (840)
T ss_pred cCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhh
Confidence 122233322222211 11111111111111111110 0 011122222211111
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHh-cCChHHHHHHHHHHHHCCCCCChhh
Q 040279 293 GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILING-YCK-ILNVEEAMSLYRQIISNGVRQTVIT 370 (626)
Q Consensus 293 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 370 (626)
.+..+.. ..-...+.+.|+++.|+++++-+.+..-+.....-+.+-.. |.+ -.++.+|.++-+..... ..-+...
T Consensus 416 ~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a 492 (840)
T KOG2003|consen 416 ELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAA 492 (840)
T ss_pred hhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHH
Confidence 1111111 11123467889999999988888776433222222322222 222 34577777776666543 1223332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
...-.......|++++|.+.|++.+..+..-....|+ +.-.+-..|++++|+..|-.+...- ..+..+...+...|..
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYEL 570 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 2222333445788999999998888643211112222 2334567789999998886654321 3467777888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
..+...|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.--+. ++-|..+..+|..-|....-+++++.+
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 88999999998887765 5567888888999999999988888877665554 567788888888888888888999999
Q ss_pred HHHhhcCCCCCCCCHHHHHHHH-HHHHccCCHhHHHHHHHHHHh
Q 040279 531 LHKMAEPERNLVPDDTTFSIVV-DLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 531 ~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~ 573 (626)
|+++.- +.|+..-|..++ .++.+.|.+++|.++|+..++
T Consensus 649 ~ekaal----iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 649 FEKAAL----IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHh----cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999876 889888888665 456788999999999999874
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.2e-14 Score=144.54 Aligned_cols=550 Identities=12% Similarity=0.064 Sum_probs=363.6
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHhhhhhhhhhhhcCC
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDF-LTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
|++++|..++.++++..|. ....|..|+..|-..|+.+++...+-.+.-. .|+. ..|..+ .....++|+
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~l-------adls~~~~~ 222 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRL-------ADLSEQLGN 222 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHH-------HHHHHhccc
Confidence 4999999999999999876 7889999999999999999999887666533 4433 333332 355678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH----HHHHHHHhcCC
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS----IIIDSLCKEGL 208 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 208 (626)
+++|.-.|.++++.. +++-...-.-...|-+.|+...|...|.++.... .+.|..-.. ..++.+...++
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999985 4454555556788999999999999999999876 223333232 34566777777
Q ss_pred cchHHHHHHHHhhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------------------
Q 040279 209 VDKAKELFLEMKGR-GINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP-------------------------- 261 (626)
Q Consensus 209 ~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------- 261 (626)
.+.|.+.++..... +-..+...++.++..+.+...++.+.....++.....++
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 79999999988763 223456788999999999999999999888877621111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 040279 262 -NLLTFNVMIDCLCKGGKINEANGLLELMIQRG--LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNI 338 (626)
Q Consensus 262 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (626)
+...+ -++-++...+..+....+...+.+.+ +.-+...|..+.+++...|++..|+.+|..+......-+...|..
T Consensus 376 ~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 22221 12222334444444444555555555 333556788899999999999999999999998865557789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHH
Q 040279 339 LINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL--------YNVEPDLSTYNILI 410 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~ 410 (626)
+..+|...|.++.|++.|++++... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999999863 33556667788889999999999999998642 23345555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC----------------------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc----
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNK----------------------FEFGIEIFNCLIDGLCKAGRLDNAWELFHKL---- 464 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 464 (626)
..+.+.|+.++-+.+-..|.... .+-.....-.+..+-.+.++.....+-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 77788888877555444443211 1111222223333333333322222221111
Q ss_pred --ccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 465 --PQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-APNVV---TF-NTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 465 --~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~-~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
...|...+ -..+..++.++.+.+++++|+.+...+.+... .-+.. .+ ...+.+....+++..|...++.++
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11122111 12345677788999999999999999887532 11222 33 334456778999999999999998
Q ss_pred cCCCCC--CCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc--hhhhhhhheeccCCccchhccccCC
Q 040279 536 EPERNL--VPDD-TTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS--LGSMIGCTVRLMPQPEMSDTLGDDG 610 (626)
Q Consensus 536 ~~~~~~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 610 (626)
. ..+. .|.. ..|+...+.+.+.|+-.--.+++..+.......+ +|-. .+-..-.+..-.......-+++..+
T Consensus 694 ~-~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~--~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 694 T-QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDT--PPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred H-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCC--cceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 7 1111 3332 2344455666677766555566665542211111 1111 1111111112222244556888999
Q ss_pred CCCCchhHHHHHHhh
Q 040279 611 DGNAGPIILSAVLLI 625 (626)
Q Consensus 611 p~~~~~~~~~~~~~~ 625 (626)
|++|-.-+.+|.-++
T Consensus 771 pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFI 785 (895)
T ss_pred CCCcHHHHHHHHHHH
Confidence 999988887776543
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.3e-14 Score=133.66 Aligned_cols=493 Identities=12% Similarity=0.065 Sum_probs=360.2
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
+++..|+.+|++++.-+ ..+...|...+.+-.++++..-|..+|++++..-...|...|..+. +--..|++
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y--------mEE~LgNi 157 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY--------MEEMLGNI 157 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH--------HHHHhccc
Confidence 57889999999998865 4488899999999999999999999999999875555666665543 33457999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHH
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 213 (626)
..|.++|++.... .|+..+|.+.|+.-.+.+.++.|..++++.+- +.|++..|......-.++|+...|.
T Consensus 158 ~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 158 AGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 9999999999876 89999999999999999999999999999986 4699999999999999999999999
Q ss_pred HHHHHHhhC-CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH-----
Q 040279 214 ELFLEMKGR-GI-NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN-LLTFNVMIDCLCKGGKINEANGL----- 285 (626)
Q Consensus 214 ~~~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~----- 285 (626)
.+|+...+. |- ..+...+.+....=..+..++.|.-+|+-.+..-+... ...|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988764 10 11223344444444567889999999988887532211 34455555544455665444432
Q ss_pred ---HHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHH--------HHhcCChHHHH
Q 040279 286 ---LELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTV-VSYNILING--------YCKILNVEEAM 353 (626)
Q Consensus 286 ---~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~~~~~~A~ 353 (626)
++.+.+.+ +-|-.+|-..+..-...|+.+...++|++....-.+.+. ..|...|.. -....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444442 345566667777777889999999999999886322221 122222211 12467899999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 354 SLYRQIISNGVRQTVITYNTLLSGL----FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHML 429 (626)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 429 (626)
++|+..++. ++....||..+--+| .++.+...|.+++...+ |..|...++...|..-.+.++++.+..+++..
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999985 666677776654444 46788999999998887 55888899999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 430 EMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
.+.+ |-+..+|......-...|+.+.|..+|+-+++... ..-...|.+.|..-...|.+++|..+|+++++. .+..
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence 9877 66788898888888899999999999999887421 112446777777778899999999999999986 3455
Q ss_pred HHHHHHHHHHH-----hcC-----------CHHHHHHHHHHhhcCCCCCCCCH---HHHHHHHHHHHccCCHhHHHHHHH
Q 040279 509 VTFNTLMHGFL-----QNN-----------KTSKVVELLHKMAEPERNLVPDD---TTFSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 509 ~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
.+|.+....-. +.+ ....|..+|+.+........|.. ..+....+.-...|...+...+-.
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 56666654332 233 45678888888765222233321 122233333345566656555555
Q ss_pred HHH
Q 040279 570 SSY 572 (626)
Q Consensus 570 ~~~ 572 (626)
.|+
T Consensus 621 ~mP 623 (677)
T KOG1915|consen 621 KMP 623 (677)
T ss_pred hcc
Confidence 554
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=4.1e-15 Score=135.07 Aligned_cols=429 Identities=17% Similarity=0.189 Sum_probs=263.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHH-HHHHHHHHCCCCCCH
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEAT-WLFKNMIAFGVRPDV 152 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 152 (626)
.+++-+.|+.. ..+|....+.-+|+.|.+.|+......-..++.. ..|....++.-|. +.|-.|...| ..+.
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~L-----V~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~ 187 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRL-----VTYYNSSNVPFAEWEEFVGMRNFG-EDST 187 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhhcCCCCcchhHHHHhhccccc-cccc
Confidence 34556666654 5678899999999999999888887777777753 3455555554332 2333444443 2233
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT 232 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (626)
.+| +.|+..+ -+|+. .|.+..++..+|.++++.-..+.|.+++++......+.+..+||
T Consensus 188 ~sW--------K~G~vAd--L~~E~-----------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN 246 (625)
T KOG4422|consen 188 SSW--------KSGAVAD--LLFET-----------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFN 246 (625)
T ss_pred ccc--------ccccHHH--HHHhh-----------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhh
Confidence 334 3454433 33333 25556788888888888888888888888887776677778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE----ANGLLELMIQRGLNPDRFTYNSLMDGY 308 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~ 308 (626)
.+|.+-.-..+ .+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+
T Consensus 247 ~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 247 GLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred hhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 88765443222 6777888887788888888888888888887654 456777788888888888888888877
Q ss_pred HhcCChHH-HHHHHHHHHhc----CC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---hhhHH
Q 040279 309 CLVGRIDT-AREIFLSMHSK----GC----KHTVVSYNILINGYCKILNVEEAMSLYRQIISNG----VRQT---VITYN 372 (626)
Q Consensus 309 ~~~g~~~~-a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~ 372 (626)
.+.++..+ +..++.++... .. +.+...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 77776543 44555554432 12 2234456666777777777777776655444221 1222 13345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG 452 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 452 (626)
.+....++....+.....|+.|.-.-.-|+..+...++.+..-.|.++-.-++|.++...|...+......++..+++..
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 56666677777778888888887665667777777777877777888877777777776554433333333333333322
Q ss_pred -C--------HHH-----HHHHH-------HhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C---CCC
Q 040279 453 -R--------LDN-----AWELF-------HKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-C---APN 507 (626)
Q Consensus 453 -~--------~~~-----A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~---~p~ 507 (626)
+ +.. |..++ .++.+. .......+.++..+.+.|..++|.+++..+.+++ - .|.
T Consensus 483 ~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 483 LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 0 000 11111 111211 2233344555555666677777777776664432 1 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 508 VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
......++....+.+++..|...++-|..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22333444555566666666666666655
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=6.8e-14 Score=133.92 Aligned_cols=519 Identities=10% Similarity=0.025 Sum_probs=268.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC------------CCCCCHhhHHHHHHhhh
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSI------------GLLPDFLTLNILINCFG 121 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------g~~p~~~~~~~ll~~~~ 121 (626)
+|...|+.+++.+.+.+|. ++..|-.-++.--..|.+..|..+..+=-+. .+.|....-..+-.+..
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4678899999999988876 5556666555556666666666554332111 01222221111111111
Q ss_pred -------------------------------------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 040279 122 -------------------------------------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR 164 (626)
Q Consensus 122 -------------------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 164 (626)
.+=.......+.+.|..++.+..+. ++.+.. |..++.+
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~d----LwlAlar 418 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMD----LWLALAR 418 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHH
Confidence 1111112223333444444444433 222222 3345666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHH----hhCCCCCCcchHHHHHHHHHh
Q 040279 165 TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEM----KGRGINPAVVVCTTLIHGFCC 240 (626)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~ 240 (626)
..-++.|..++.++.+. +|.+..+|.+-...--.+|+.+...+++++- ...|+..+...|..=...|-.
T Consensus 419 LetYenAkkvLNkaRe~-------iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREI-------IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHhh-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 67788888888888776 4778888888888888888888888877754 344666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 040279 241 AGNWEEVNGLFIEMLDLGPRPN--LLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAR 318 (626)
Q Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 318 (626)
.|-.--+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|...++. ++.+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 6666666666666665554321 235555566666666666666666665554 2333344444444444445555555
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 040279 319 EIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN 398 (626)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (626)
.+|++....- +.....|-.....+-..|+...|..++.++.+.. +.+...|-..+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 5555554441 1123333333344444455555555555554432 123344444444444555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
.|+...|.--+...-..++.++|++++++..+.- +.-...|..+.+.+.+.++++.|...|..-.+. ++-.+..|..
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 2333333333333333444555555554444331 223344444444444444555444444443332 1222334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--------------------
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE-------------------- 538 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------- 538 (626)
+...--+.|..-.|..++++..-.+ +.|...|...++.-.+.|..+.|..+..++++.-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccc
Confidence 4444444444444444444444433 3344444444444444444444444433333200
Q ss_pred -------CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhhhhhheecc
Q 040279 539 -------RNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCTVRLM 597 (626)
Q Consensus 539 -------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 597 (626)
....-|+..+..++..+....+++.|.++|++++.. .+...|.|..++...++.+
T Consensus 804 Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~----d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 804 TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK----DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCccchHHHHHHHHHHHhC
Confidence 001235667777888888888999999999998622 2233334777776654433
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=4.4e-14 Score=135.18 Aligned_cols=483 Identities=13% Similarity=0.062 Sum_probs=333.2
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+.++|+.++.++.+--|. +...|. +|++...|+.|..+++...+. +.-+...|.+.- ..--.+|+.+
T Consensus 391 ~~~darilL~rAveccp~-s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa-------~LEE~ngn~~ 457 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQ-SMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAA-------KLEEANGNVD 457 (913)
T ss_pred ChHHHHHHHHHHHHhccc-hHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH-------HHHHhcCCHH
Confidence 455577777776665443 455554 445556677777777777654 122233333221 2334566666
Q ss_pred HHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcc
Q 040279 135 EATWLFKNM----IAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVD 210 (626)
Q Consensus 135 ~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (626)
...++..+- ...|+..+...|..=...|-..|..-.+..+....+..+.+. ..-..+|..-...|.+.+.++
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe----ed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE----EDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc----chhHhHHhhhHHHHHhcchHH
Confidence 666666553 334666677777777777777777777777777766655331 233556777777788888888
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 211 KAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
-|+.+|....+. .+-+...|......--..|..++...+|++....-+ -....|......+-..|+...|..++.+..
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888888877765 244556677666666667778888888888877633 245566666677777788888888888887
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 040279 291 QRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVIT 370 (626)
Q Consensus 291 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 370 (626)
+.... +...|...+..-.....++.|..+|.+.... .++...|..-+...--.++.++|++++++.++. ++.-...
T Consensus 612 ~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl 687 (913)
T KOG0495|consen 612 EANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKL 687 (913)
T ss_pred HhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHH
Confidence 76433 6667777777777888888888888877765 456777777666666678888888888887775 3323445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
|..+...+.+.++.+.|.+.|..=.+. ++-....|..+...--+.|++-.|..++++....+ |.+...|...+++-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence 666667777777888877777665543 23334455566666667778888888888777655 5677788888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
.|+.+.|..++.++++. ++.+...|..-|....+.++-......+++. ..|+..+..+...+....++++|.+.
T Consensus 766 ~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred cCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777764 3445666777776666666644444433332 45778888888899999999999999
Q ss_pred HHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 531 LHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
|.++++ +.|| -.+|..+...+.+.|.-++-.+++.+..
T Consensus 840 f~Ravk----~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 840 FERAVK----KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHc----cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999998 7786 4788888999999999888888888874
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=2.7e-15 Score=137.18 Aligned_cols=485 Identities=13% Similarity=0.050 Sum_probs=304.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSF-NLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGN 122 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 122 (626)
+...|-... -..+|+..++-+.+....|+.-.. ..+...+.+.+++..|+..|+-.+..-...+..+...++ ..
T Consensus 207 laqqy~~nd--m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil---~n 281 (840)
T KOG2003|consen 207 LAQQYEAND--MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL---NN 281 (840)
T ss_pred HHHHhhhhH--HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH---hh
Confidence 334444433 478899999988776666665433 336678889999999999999888652222333333333 35
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc------cccccHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGL------ISKTNIFSY 196 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~ 196 (626)
++..+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|++++....+++. ...|+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 678899999999999999998876 688777666777777789999999999999875432211 011222222
Q ss_pred HHHH-----HHHHhcCCcchHHHHHH---HHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 040279 197 SIII-----DSLCKEGLVDKAKELFL---EMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNV 268 (626)
Q Consensus 197 ~~l~-----~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 268 (626)
+.-+ ...-+.. -..|.+.+- ++..--+.|+-. . | .+-+++.++.-... +.-...-..
T Consensus 360 ~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa------~-----g-~dwcle~lk~s~~~--~la~dlei~ 424 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFA------A-----G-CDWCLESLKASQHA--ELAIDLEIN 424 (840)
T ss_pred HHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchh------c-----c-cHHHHHHHHHhhhh--hhhhhhhhh
Confidence 2111 1111111 111222111 111111111100 0 0 11112222111110 000001111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040279 269 MIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL--VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346 (626)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (626)
-...+.+.|+++.|.++++-+.+..-+.....-+.|...+.- ..++..|.++-+...... .-+......-.+....+
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 223467889999999998888776433333333334333333 335666766665555431 11222222222333457
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLF 426 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (626)
|++++|.+.|++.+.....-....|+ +.-.+...|+.++|++.|-++... +..+..+...+...|....+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 88999999999988752221112222 333466788999999888776432 2346667777888888888999999988
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 427 HMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
.+.... ++.|+.+...|.+.|-+.|+-..|.+++-+--.. ++.+..+...|..-|....-+++++.+|++..- +.|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 776643 4778889999999999999999998887665554 566788888888888888888999999988866 689
Q ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCC
Q 040279 507 NVVTFNTLMHGF-LQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEK 560 (626)
Q Consensus 507 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 560 (626)
+..-|..++..| .+.|++++|.++|+..-+ .++-|..++..|+..+...|-
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr---kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR---KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCccchHHHHHHHHHhccccc
Confidence 999998887754 568999999999999865 344577888888887766653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.7e-14 Score=143.43 Aligned_cols=529 Identities=12% Similarity=0.047 Sum_probs=355.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYG 156 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (626)
.....+..+...|++++|..++.++++. .|.....=. .++..|-.+|+.+++...+--+.-.. +-|...|.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~------tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~ 211 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYY------TLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWK 211 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHH------HHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHH
Confidence 3334445556679999999999999987 443322222 23578999999999998777666553 44678999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH----
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT---- 232 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---- 232 (626)
.+.....+.|.+++|.-.|.++++.. |++...+---+..|-+.|+...|.+.|.++.....+.|..-..
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999999999999999987 6666666777889999999999999999999874322222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDL-GPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNP--------------- 296 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 296 (626)
..++.+...++-+.|.+.++..... +-..+...++.++..+.+...++.+.............+
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 3456677778889999999888762 233456678899999999999999998888776622222
Q ss_pred ------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 297 ------------DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKG--CKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 297 ------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
+..+ -.++-++......+....+...+.+.. ..-+...|.-+..+|...|++..|+.+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 2222 122334445555555555666666655 3335667888999999999999999999999988
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCC
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE--------MNKF 434 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~ 434 (626)
....+...|..+...|...|.++.|...|+..+... +.+...-..|...+.+.|+.++|.+.++.+. ....
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 666678899999999999999999999999998753 3344455667778889999999999998854 2334
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC----------------------CCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 435 EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG----------------------LVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
.|+........+.+...|+.++=+.+...|+..+ .+-.......++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 5556666667777888888877555444443210 111122223333344444432222
Q ss_pred HHHHHH------HHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH---HHH-HHHHHHHccCC
Q 040279 493 NDFLLY------MEKNGCAPNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDT---TFS-IVVDLLAKDEK 560 (626)
Q Consensus 493 ~~~~~~------~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~---~~~-~l~~~~~~~g~ 560 (626)
.+-... -...|+..+. ..+..++.++.+.+++++|..+...+.... -+.-+.. .+. ..+.+....++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~-~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAY-IFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHhcCC
Confidence 221111 1112222221 355667778899999999999999998721 1222332 233 44456678999
Q ss_pred HhHHHHHHHHHHhh-ccccccccCCchhhhhhhheeccCC---ccchhccccCCCCC-CchhHHHHHHh
Q 040279 561 YHECSAVSKSSYRA-CLYVTIFQPSSLGSMIGCTVRLMPQ---PEMSDTLGDDGDGN-AGPIILSAVLL 624 (626)
Q Consensus 561 ~~~A~~~~~~~~~~-~~~~~~~~p~~~~~l~~~~~~~~~~---~~~~~~~~~~~p~~-~~~~~~~~~~~ 624 (626)
+.+|.+.++.+... ..+..+.++..|...++.......+ .....++.-..|++ +..+++.+..+
T Consensus 682 ~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~ 750 (895)
T KOG2076|consen 682 PGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNL 750 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhH
Confidence 99999999998643 2233445556676443332222222 22234556677777 45555444443
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.9e-14 Score=128.86 Aligned_cols=442 Identities=15% Similarity=0.188 Sum_probs=304.9
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHH--HHhcCChhHH-HHHHHHHHHCCCCCCHhhHHHH
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGA--VAKNRHYDAV-ISFYRKLVSIGLLPDFLTLNIL 116 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~g~~p~~~~~~~l 116 (626)
+-+.++.... ++ .+.++.-+++.|...+...+...-..|... |..+.+..-| .+.|-.|...|-.. ..+|
T Consensus 118 ~E~nL~kmIS-~~--EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 118 TENNLLKMIS-SR--EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred chhHHHHHHh-hc--ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 4455555444 44 799999999999998877777766555543 3344444322 23444444443221 1222
Q ss_pred HHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHH
Q 040279 117 INCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY 196 (626)
Q Consensus 117 l~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (626)
+.|.+. . ++-+.. +-+..++..+|.+.|+-...+.|.+++++..... .+.+..++
T Consensus 191 ------------K~G~vA--d-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aF 245 (625)
T KOG4422|consen 191 ------------KSGAVA--D-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAF 245 (625)
T ss_pred ------------ccccHH--H-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhh
Confidence 234433 3 333332 4467889999999999999999999999988766 57888999
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHH
Q 040279 197 SIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEE----VNGLFIEMLDLGPRPNLLTFNVMIDC 272 (626)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (626)
|.+|.+-.-. .-.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..
T Consensus 246 N~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~ 321 (625)
T KOG4422|consen 246 NGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKN 321 (625)
T ss_pred hhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 9998764433 227899999999999999999999999999998865 46778889999999999999999999
Q ss_pred HHhcCCHHH-HHHHHHHHHh----cCCC----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC---hhhH
Q 040279 273 LCKGGKINE-ANGLLELMIQ----RGLN----PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKG----CKHT---VVSY 336 (626)
Q Consensus 273 ~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~ 336 (626)
+.+.++..+ +..++..+.. ..++ .|...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|
T Consensus 322 f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYy 401 (625)
T KOG4422|consen 322 FKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYY 401 (625)
T ss_pred hcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHH
Confidence 988888644 4444444332 2222 245567778888889999999988766554331 1222 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN 416 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (626)
..+....++....+.-...|+.+.-.-.-|+..+...++++....+.++-..+++..+...|..-+......++..+++.
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 66777888888999999999999988788899999999999999999999999999998876444444444444444433
Q ss_pred C-CH--------H-----HHHHHHH-------HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCCHh
Q 040279 417 N-CV--------Q-----EAVKLFH-------MLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPTVV 474 (626)
Q Consensus 417 g-~~--------~-----~A~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~ 474 (626)
. +. . -|..+++ ++... .......+.+.-.+.+.|..++|.++|..+.+++. .|-..
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 2 11 1 1122221 22222 34556678888889999999999999999866432 23344
Q ss_pred HHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 475 TYS---IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 475 ~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
..| .++..-...+....|..+++-|...+.+.-...-+.+...|.
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 455 455566777889999999999987653332223344444443
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.3e-13 Score=123.77 Aligned_cols=482 Identities=9% Similarity=0.055 Sum_probs=346.6
Q ss_pred HHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHH
Q 040279 61 YFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLF 140 (626)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~ 140 (626)
+-|+.-+... ..+...|-..++.-..++++..|.++|++++.. |......-|. .+..-.+...+..|..++
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdv----d~r~itLWlk----Yae~Emknk~vNhARNv~ 130 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDV----DYRNITLWLK----YAEFEMKNKQVNHARNVW 130 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----ccccchHHHH----HHHHHHhhhhHhHHHHHH
Confidence 3444444332 235667777777778889999999999999843 3222222221 124456778889999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHh
Q 040279 141 KNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMK 220 (626)
Q Consensus 141 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (626)
++.... ++.-...|--.+..--..|++..|.++|++-.+- .|+...|.+.+..-.+.+.++.|..++++..
T Consensus 131 dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 131 DRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred HHHHHh-cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 998876 2222334666666677789999999999998874 5889999999999999999999999999988
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-
Q 040279 221 GRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL-GP-RPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD- 297 (626)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 297 (626)
-. .|++..|......=.+.|....|..+|+...+. |- .-+...+.++...-..+..++.|.-+|+-.+.. ++.+
T Consensus 202 ~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~r 278 (677)
T KOG1915|consen 202 LV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGR 278 (677)
T ss_pred ee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccc
Confidence 74 689999998888888999999999999888763 11 112334555555556677888899999888876 2323
Q ss_pred -HhhHHHHHHHHHhcCChHHHHHH--------HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 040279 298 -RFTYNSLMDGYCLVGRIDTAREI--------FLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTV 368 (626)
Q Consensus 298 -~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 368 (626)
...|......--+-|+....... ++.+...+ +.|-.+|-..++.-...|+.+...++|++++.. ++|-.
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ 356 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPAS 356 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchh
Confidence 34455555544455665444433 33344443 457788888888888899999999999999976 44422
Q ss_pred --hhHHHHH--------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCC
Q 040279 369 --ITYNTLL--------SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG----LCKNNCVQEAVKLFHMLEMNKF 434 (626)
Q Consensus 369 --~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~ 434 (626)
..|...| -.-....+.+.+.++|+..++. ++....|+.-+=-. -.++.++..|.+++...+. .
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~ 433 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--K 433 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--c
Confidence 1121111 1123568889999999998873 44445555544333 3467899999999987764 4
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHH
Q 040279 435 EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-CAPNVVTFNT 513 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ 513 (626)
.|...+|...|..-.+.+++|....++++.++.+. -+..+|...+..-...|+.+.|..+|.-+++.. +......|..
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 67888999999999999999999999999999753 367889888888888999999999999998753 1122345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH-----ccC-----------CHhHHHHHHHHHHh
Q 040279 514 LMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLA-----KDE-----------KYHECSAVSKSSYR 573 (626)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 573 (626)
.+..=...|.++.|..+|+.+++ ..+...+|...+..-. ..| ....|.++|+++..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~----rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLD----RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHH----hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 66666789999999999999988 5555567766665433 334 56778888888753
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=7e-14 Score=129.46 Aligned_cols=414 Identities=12% Similarity=-0.000 Sum_probs=263.1
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPD-VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIII 200 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (626)
..++-+.++|.+++|++.|.+.+.. .|+ +.-|.....+|...|+|++.++--.+.++.+ |.-+..+..-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-------P~Y~KAl~RRA 190 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-------PDYVKALLRRA 190 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-------cHHHHHHHHHH
Confidence 5577888999999999999999987 667 6678888889999999999999988888866 44456666777
Q ss_pred HHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCChhhHHHHHHHHHhcC
Q 040279 201 DSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD-LG--PRPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~ 277 (626)
.++-+.|++++|+.=..-.--.+--.+..+--.+=+.+- ..|....++-.+ .+ +-|+.....+....+...-
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 788888888877643222211110111111111111111 112222222222 11 2344444344333321110
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH----Hhc-CChHHHHHHHHHHHhc---CC---CCC------hhhHHHHH
Q 040279 278 KINEANGLLELMIQRGLNPDRFTYNSLMDGY----CLV-GRIDTAREIFLSMHSK---GC---KHT------VVSYNILI 340 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~-g~~~~a~~~~~~~~~~---~~---~~~------~~~~~~l~ 340 (626)
. .....+.......+..++ ... ..+..|...+.+-... .. ..| ..+...-.
T Consensus 266 ~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 K------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred c------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 0 000000000111111111 000 1122332222221100 00 011 11222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 341 NGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQ 420 (626)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (626)
..+.-.|+.-.|..-|+..+..... +...|..+..+|....+.++-...|.+....+ +.++.+|..-.+.+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 3344578888999999998886433 23337777888999999999999999998765 446667777778888888999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYME 500 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (626)
+|..=|+..+... |.+...|..+..+..+.+++++++..|++..++ ++..++.|+.....+..++++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999888765 556777778888888899999999999999886 55568899999999999999999999999998
Q ss_pred HCCCCCC-------HHHHHHH-HHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 501 KNGCAPN-------VVTFNTL-MHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 501 ~~~~~p~-------~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
+. .|+ ...+..- +-.+.-.+++..|.++++++++ +.|. ...+..|+....+.|+.++|+++|++.
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e----~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE----LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc----cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 74 333 2222111 1112234889999999999998 8885 567889999999999999999999986
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3e-12 Score=118.06 Aligned_cols=366 Identities=11% Similarity=0.004 Sum_probs=239.9
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC
Q 040279 148 VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA 227 (626)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 227 (626)
...|...+-..+..+-+.|....|+..|...+... |-.-..|..|..... +. ++...... |.+.+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~lit---~~----e~~~~l~~-~l~~~ 224 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELIT---DI----EILSILVV-GLPSD 224 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhhc---hH----HHHHHHHh-cCccc
Confidence 34566666666777778888999999998887654 444555555444332 22 22222221 11212
Q ss_pred cchH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHhhHHH
Q 040279 228 VVVC--TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN--PDRFTYNS 303 (626)
Q Consensus 228 ~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 303 (626)
.... --+..++-...+.+++.+-.......|.+-+...-+....+.....++++|+.+|+++.+...- -|..+|..
T Consensus 225 ~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN 304 (559)
T KOG1155|consen 225 MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN 304 (559)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence 1111 1234455566677788877777777776655555555555666778888999999888887311 14456655
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 040279 304 LMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQ 383 (626)
Q Consensus 304 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (626)
++-. +..+- .+.++..-...--+--+.|...+.+-|+-.++.++|...|++.++.+. .....|+.+.+-|....+
T Consensus 305 ~LYv--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 305 VLYV--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHHH--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcc
Confidence 5432 22211 122222211111123456777778888888888888888888887632 245667777888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 384 AGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
...|.+-++...+.. +.|...|-.+.++|.-.+.+.-|+-.|++..... |.|...|.+|.++|.+.++.++|++.|.+
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888888754 5577788888888888888888888888887765 66888888888888888888888888888
Q ss_pred cccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 464 LPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GC-AP-NVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
....|.. +...+..++..|-+.++.++|...|++.++. |. .| .......|..-+.+.+++++|..+......
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 8876432 5577888888888888888888888777652 21 22 122233345556677777777776666654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=2.8e-13 Score=133.51 Aligned_cols=251 Identities=9% Similarity=0.030 Sum_probs=161.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 040279 309 CLVGRIDTAREIFLSMHSKGCKHTVVSYN--ILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386 (626)
Q Consensus 309 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (626)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+.. +.++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 22222111 22344555555666666555555542 2244455555555666666666
Q ss_pred HHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 040279 387 AQKLFDEMKLYNVEPDL-------STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWE 459 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (626)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666554432211 122222333333445566666666654332 4577788888888889999999999
Q ss_pred HHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 460 LFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
++++..+. .|+.... ++.+....++.+++.+..+...+.. +-|...+..+.+.|.+.+++++|.+.|+++.+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--- 356 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--- 356 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---
Confidence 98888774 4555322 2333445688899999998888763 45566778888899999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 540 NLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 540 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|+...+..+..++.+.|+.++|.+++++.+
T Consensus 357 -~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 357 -QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred -cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78998888889999999999999999988874
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.7e-12 Score=122.77 Aligned_cols=267 Identities=10% Similarity=0.010 Sum_probs=138.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 297 DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS 376 (626)
Q Consensus 297 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (626)
+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|....+|-.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33334444445555566666666666655543 334444444455555556555555555555554 3334555655555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDN 456 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 456 (626)
.|...|+..+|.+.|.+....+ +.=...|..+...++-.|..++|+..+....+.- +-...-+-.+..-|.+.+++..
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 5555566666666666554322 1112345555555666666666666555443221 1111112223334555566666
Q ss_pred HHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 457 AWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN--GC---A-PNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 457 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~-p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
|.+.|.+.... .+-|+..++.+.......+.+.+|..+|+..... .+ . --..+++.|+.+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 66666665543 1224555555555555555666666666555421 00 0 1223455566666666666666666
Q ss_pred HHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 531 LHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 531 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+++.+. ..| +..++..++-+|...|+++.|.+.|.+++
T Consensus 478 ~q~aL~----l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALL----LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHH----cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 666655 444 45556666666666666666666666654
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=3.9e-13 Score=133.34 Aligned_cols=291 Identities=10% Similarity=0.024 Sum_probs=165.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 040279 275 KGGKINEANGLLELMIQRGLNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAM 353 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 353 (626)
..|+++.|.+.+....+. .|+. ..+-....+..+.|+++.|.+++.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 345555555555544443 2222 1222223444445555555555555544321111112222344455555566666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 040279 354 SLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGL---CKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~ 430 (626)
..++.+.+.. +.+......+...+...|+++.|.+++..+.+.+..+.......-..++ ...+..+++...+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555555542 2244445555555666666666666666665554322111111111111 11122222223333333
Q ss_pred HCCC---CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 431 MNKF---EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVT---YSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 431 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
.... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 2221 2367778888888888888888888888888752 34331 1112222334577888899888888752
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 505 APNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 505 ~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+-|+ ....++++.+.+.|++++|.++|++... ....|+...+..++..+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a--~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA--CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH--hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345 5677899999999999999999995333 23789998889999999999999999999998753
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.9e-12 Score=117.35 Aligned_cols=365 Identities=12% Similarity=0.034 Sum_probs=258.0
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--H
Q 040279 191 TNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFN--V 268 (626)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ 268 (626)
.|...+-...-.+.+.|..+.|.+.|...... -+..|.+-+....-..+.+.+. .... +.+.+..-+. -
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHH
Confidence 44444445555666777888888888777654 2334443333222222222221 1111 1221222111 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhc
Q 040279 269 MIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCK--HTVVSYNILINGYCKI 346 (626)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 346 (626)
+..++....+.+++..-.+.....|++.+...-+....+.....|+|.|+.+|+++.+..+- -|..+|+.++-. +.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hh
Confidence 34455566678888888888888888777766666667777889999999999999987321 145666665533 22
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLF 426 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (626)
.+.. +..+-+-.-.-.+-.+.|...+...|.-.++.++|...|+..++.+ +.....|+.+.+-|....+...|+.-+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2221 1222211111122345677778888999999999999999999864 334567888888999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 427 HMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
+...+.. |.|-..|-.|.++|.-.+...-|+-+|++..+.. +.|...|.+|+.+|.+.++.++|++.|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999876 7789999999999999999999999999999852 4468999999999999999999999999999986 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAE--PERNLVPD--DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...+..+...|-+.++.++|..+|++.++ ...|...+ .....-|..-+.+.+++++|..+.....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 778999999999999999999999999876 11222222 2333445666789999999999888774
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=6.5e-16 Score=145.53 Aligned_cols=259 Identities=17% Similarity=0.159 Sum_probs=107.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 040279 303 SLMDGYCLVGRIDTAREIFLSMHSKG-CKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQA 381 (626)
Q Consensus 303 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (626)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|+..++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667778888888888886544443 2334555555666666788888888888888876433 45556666666 678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK-FEFGIEIFNCLIDGLCKAGRLDNAWEL 460 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (626)
+++++|.+++....+. .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776543 3456667777888888899999998888876432 345677888888888999999999999
Q ss_pred HHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 461 FHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 461 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
+++.++. .| |....+.++..+...|+.+++.+++....+.. +.|+..+..+..+|...|++++|+.++++..+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--- 242 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--- 242 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH---
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc---
Confidence 9998885 34 47778888888888999999888888887763 55667788888899999999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 540 NLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 540 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..| |+.+...++.++...|+.++|.++.+++.
T Consensus 243 -~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 -LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HSTT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccccc
Confidence 667 67778888999999999999999988874
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.3e-12 Score=128.85 Aligned_cols=252 Identities=9% Similarity=0.022 Sum_probs=136.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHhhHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 040279 274 CKGGKINEANGLLELMIQRGLNPDRFTYN--SLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEE 351 (626)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (626)
...|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+... .+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 22322111 223444555555555555555555432 234445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 352 AMSLYRQIISNGVRQTV-------ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
|.+++..+.+.+..++. ..|..++.......+.+...++++...+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554332111 01122222222333344444555544332 23455566666677777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
++++..+. +++.... ++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+.+.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666653 3344222 1222334467777777777766642 234556667777777777777777777777763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|+...+..+...+.+.|+.++|.+++++...
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57777777777777777777777777776644
No 45
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.1e-11 Score=110.42 Aligned_cols=230 Identities=10% Similarity=0.102 Sum_probs=122.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H----HhcCCHHHH
Q 040279 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG-L----CKNNCVQEA 422 (626)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~g~~~~A 422 (626)
+-+.|++++-.+.+. - +..-..++-.|.+.++..+|..+.+++.- ..|-......++.+ + .......-|
T Consensus 269 ngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 345566555554442 1 12223445556666777777666665531 12222222222211 1 111223445
Q ss_pred HHHHHHHHHCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGI-EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
.+.|+..-..+...|. .--.++...+.-..++++.+.+++.+...-...|...+ .+..+++..|++.+|+++|-++..
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC
Confidence 5555544444333222 22233444445556677777777766653222233333 466777777888888888877765
Q ss_pred CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhhccccc
Q 040279 502 NGCAPNVVTF-NTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD-TTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVT 579 (626)
Q Consensus 502 ~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 579 (626)
-.++ |..+| ..|.++|.++++++-|.+++-++-. +.+. ..+..+++.+.+.+.+=-|.+.|......
T Consensus 422 ~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l----- 490 (557)
T KOG3785|consen 422 PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-----PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL----- 490 (557)
T ss_pred hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc-----
Confidence 4434 34444 4555677788888888777766643 2222 33445566677777777666666665321
Q ss_pred cccCCchhhhhhhhee
Q 040279 580 IFQPSSLGSMIGCTVR 595 (626)
Q Consensus 580 ~~~p~~~~~l~~~~~~ 595 (626)
...|..|..-.|+|..
T Consensus 491 DP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 491 DPTPENWEGKRGACAG 506 (557)
T ss_pred CCCccccCCccchHHH
Confidence 3355558777776643
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.7e-12 Score=128.76 Aligned_cols=293 Identities=10% Similarity=0.001 Sum_probs=169.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 040279 240 CAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTARE 319 (626)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 319 (626)
..|+++.|.+.+.+..+.... ....+-....++...|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666666665554222 1223334445556666677776666666554211111222333555666677777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHH---HHHcCCHHHHHHHHHHHH
Q 040279 320 IFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN-TLLSG---LFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~a~~~~~~~~ 395 (626)
.++.+.+..+. +......+...+.+.|++++|.+.+..+.+.+.. +...+. .-..+ ....+..+...+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77666666422 4455666666666777777777777776665433 222221 11111 122222222233333333
Q ss_pred hCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 396 LYN---VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEI-FNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 396 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
+.. .+.+...+..+...+...|+.++|.+++++..+..+...... .....-.....++.+.+.+.+++..+.. +-
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 321 123666777777788888888888888887776542221111 1111112233567777888887777642 22
Q ss_pred CH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 472 TV--VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 472 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34 566688888888888888888888544333467887788888888888888888888888654
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.9e-12 Score=120.10 Aligned_cols=221 Identities=18% Similarity=0.117 Sum_probs=172.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYA 387 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 387 (626)
+.-.|+.-.|..-|+...+.... +...|-.+...|....+.++....|.+..+.+ +.++.+|..-..++.-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44568888888889888887533 22337777788889999999999999988874 34778888888888888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (626)
..-|++..+.. +.+...|..+..+..+.+.++++...|++.++. +|..++.|+...+.+..+++++.|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998753 334556666666667888999999999998865 4778899999999999999999999999998774
Q ss_pred CCCCC---------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 468 GLVPT---------VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 468 ~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|+ +.+.-+++..- -.+++..|..++++..+.+ +.....+..|...-.+.|+.++|+++|++...
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233 11222223222 3489999999999999864 33567899999999999999999999999876
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.9e-12 Score=112.77 Aligned_cols=229 Identities=16% Similarity=0.167 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+.+.|.+.|-++.+.++. +..+..+|++.+.+.|..+.|+++.+.+... || .|++.=+.+.-.+++-|...|-++
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd-lT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD-LTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC-CchHHHHHHHHHHHHHHHHhhhhh
Confidence 456666666666554433 4455555666666666666666666666542 33 222222222334555666666666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
.|+.+|..+...+ .--..+...|+..|-...+|++|+++-+++.+.+..+.. ..-...|.-|...+....+++.|..
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~--~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR--VEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch--hHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6666666665432 112344555666666666666666666655554411000 0001223334444444445555555
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
++.+..+.+ +..+..-..+.+.....|+++.|.+.++.+.+.++.--..+...+..+|...|+.++....+..+.+.
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555554432 11223333344444455555555555555554433333334444445555555555555554444443
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.1e-11 Score=115.54 Aligned_cols=283 Identities=14% Similarity=0.035 Sum_probs=195.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILIN 341 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (626)
+......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++...- +..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 45555556666777777888888877777663 4444455555567777777766666666666553 335677777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 342 GYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQE 421 (626)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (626)
-|...|+..+|.+.|.+....... =...|-.+...|.-.+..+.|...+....+. .+-....+..+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 777778888888888777654211 2345677777777778888887777776553 11122223334445777788888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC--CCC----CCHhHHHHHHHHHHhcCCHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK--GLV----PTVVTYSIMIHGLCRKGKLEKANDF 495 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 495 (626)
|.+.|.+..... |.|+.+.+.+.-.....+.+.+|..+|+..+.. ... --..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887777554 667777777777777788888888888776531 011 1244678888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDL 554 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 554 (626)
+++.+... +.+..++.+++-.|...|+++.|++.|.+++- +.|+..+...++..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cCCccHHHHHHHHH
Confidence 98888863 66788888888888888999999999998887 88877555544443
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=3.7e-12 Score=112.15 Aligned_cols=292 Identities=16% Similarity=0.173 Sum_probs=208.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 129 VENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
-.++.++|..+|-+|.+.+ +.+..+..+|.+.|-..|..+.|+.+++.+.+.. +........+...|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999999864 3355677889999999999999999999988643 11112223345567788889999
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL----LTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 284 (626)
+|.|+++|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..+.. ..|..+...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998864 234567788899999999999999999988887655432 245556666667788888898
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040279 285 LLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV 364 (626)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 364 (626)
++.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.+...-..+...+..+|.+.|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 88888876422 33333455677888899999999999988886555566777888888889999888888888887633
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 040279 365 RQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK---NNCVQEAVKLFHMLE 430 (626)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 430 (626)
....-..+........-.+.|..++.+-.+. +|+...+..+++.... .|...+....++.|.
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3333344444444444455555554444433 6888888888876543 334555555555555
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=1.2e-09 Score=105.29 Aligned_cols=496 Identities=15% Similarity=0.146 Sum_probs=307.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 45 LHENCKSGIINLNEARYFFGYMTHMQPS-PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 45 l~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
+.....++ ++..-+..|++++..-|. .....|...+......|-++-++.+|++.++. .|.. .+-.|
T Consensus 109 lq~l~~Q~--~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyi------ 176 (835)
T KOG2047|consen 109 LQFLIKQG--LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYI------ 176 (835)
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHH------
Confidence 34444444 888999999998876543 34568999999888999999999999999875 4443 33333
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCCccccccHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFG------VRPDVITYGTLINGFCRTGNLSV---ALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
..++..+++++|.+.+..++... .+.+-..|..+-....++-+.-. ..++++.+...- ...-..
T Consensus 177 -e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf------tDq~g~ 249 (835)
T KOG2047|consen 177 -EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF------TDQLGF 249 (835)
T ss_pred -HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC------cHHHHH
Confidence 34567889999999998886542 12334456666555555443322 334444444432 122345
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhc----------------C------CHHHHHHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCA----------------G------NWEEVNGLFI 252 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~------~~~~a~~~~~ 252 (626)
.|.+|.+.|.+.|.+++|.++|++.... ..+..-|..+.+.|+.- + +++-...-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 7899999999999999999999998765 23444455555554421 1 1223334444
Q ss_pred HHHHCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------HhhHHHHHHHHHhcCChH
Q 040279 253 EMLDLGP-----------RPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD------RFTYNSLMDGYCLVGRID 315 (626)
Q Consensus 253 ~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~ 315 (626)
.+.+..+ +.++..|..-+. ...|+..+....+.+..+. +.|. ...|..+.+.|-..|+.+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4443321 113333433333 2356677777777777654 2222 235677888899999999
Q ss_pred HHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------ChhhHHHHH
Q 040279 316 TAREIFLSMHSKGCKHT---VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQ-----------------TVITYNTLL 375 (626)
Q Consensus 316 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~ 375 (626)
.|..+|++..+...+.- ..+|......-.+..+++.|+++++......-.| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887644322 3445555566667888999999988876532111 123345555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHH---c
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFG-IEIFNCLIDGLCK---A 451 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~ 451 (626)
..--..|-++....+|+.+....+. ++.........+-...-++++.+++++-...-..|+ ..+|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 5556678888888899998875542 222222222233445567888888876554332333 3466666665554 2
Q ss_pred CCHHHHHHHHHhcccCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPTVV--TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV--VTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a 527 (626)
..++.|..+|++.++ |.+|... .|......--+.|....|+.+++++... +++.. ..|+..+.-....=-....
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 468889999999888 5555532 2222223334568888888888887654 34432 3666666544433334566
Q ss_pred HHHHHHhhcCCCCCCCCHHHHH---HHHHHHHccCCHhHHHHHHHHH
Q 040279 528 VELLHKMAEPERNLVPDDTTFS---IVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 528 ~~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
..+|+++++ .-|+...-. ..++.-.+.|..+.|..+|...
T Consensus 642 R~iYekaIe----~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 642 REIYEKAIE----SLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHH----hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 777888877 566654433 2333445678888888877664
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.6e-13 Score=130.07 Aligned_cols=288 Identities=15% Similarity=0.069 Sum_probs=203.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcc
Q 040279 131 NRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVD 210 (626)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (626)
-+..+|+..|+.+... +.-.......++.+|...+++++|.++|+.+.+.... ...+..+|.+.+..+-+.-..
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~----rv~~meiyST~LWHLq~~v~L- 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY----RVKGMEIYSTTLWHLQDEVAL- 406 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccchhHHHHHHHHHHhhHHH-
Confidence 3467888888885544 3334466677888888888888888888888776521 234566777766654332111
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 211 KAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
--+-+++.+.. +-.+.+|..+.++|.-+++.+.|++.|++.++.++. ...+|+.+..-+....++|.|...|+..+
T Consensus 407 --s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 407 --SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred --HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 11122222221 336778888888888888888888888888875332 67788888888888888888888888876
Q ss_pred hcCCCCCHhhHH---HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040279 291 QRGLNPDRFTYN---SLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT 367 (626)
Q Consensus 291 ~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (626)
.. |...|+ -+...|.+.++++.|+-.|+...+.+.. +.+....+...+.+.|+.|+|+++++++...... |
T Consensus 483 ~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 483 GV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred cC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 54 444444 4556788888888888888888877533 5666777777888888888888888888876433 5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE 435 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (626)
+..--..+..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|.-+.+..++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 555555667777788888888888888875 2344557777788888888888888888877766543
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=3.4e-10 Score=108.92 Aligned_cols=500 Identities=11% Similarity=0.083 Sum_probs=282.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSI-GLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDV 152 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (626)
-+..|-..++.+.++|+...-+..|+..+.. .+.-....|...+. -....+-++-++.++++.++. ++
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~-------Fv~~~~lPets~rvyrRYLk~----~P 169 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK-------FVESHGLPETSIRVYRRYLKV----AP 169 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH-------HHHhCCChHHHHHHHHHHHhc----CH
Confidence 3467888899999999999999999988753 22223345555542 344567788999999999976 44
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCc---chHHHHHHHHhhCCCCCC--
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLV---DKAKELFLEMKGRGINPA-- 227 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~-- 227 (626)
..-.-.+..+++.+++++|.+.+...+..+..-+...+.+-..|.-+.....+..+. -...+++..+..+ -+|
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~ 247 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQL 247 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHH
Confidence 457788899999999999999999988655332223456666777777777665443 2344455555443 233
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHhhHHHHHH
Q 040279 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL-NPDRFTYNSLMD 306 (626)
Q Consensus 228 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~ 306 (626)
...|++|...|.+.|.+++|.++|++.++. ..+..-|..+.++|+.-..-.-+.. ++...+.+. +-+..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~-me~a~~~~~n~ed~~------- 317 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAK-MELADEESGNEEDDV------- 317 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHH-HhhhhhcccChhhhh-------
Confidence 357899999999999999999999998874 2244556666666654322111111 110001111 11111
Q ss_pred HHHhcCChHHHHHHHHHHHhc-----------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------hh
Q 040279 307 GYCLVGRIDTAREIFLSMHSK-----------GCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT------VI 369 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~ 369 (626)
+++-....|+.+... .-+.+...|..-+..+ .|+..+.+..|.++.+. +.|. ..
T Consensus 318 ------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 318 ------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 111222222222221 1122334444333332 45566666666666554 2221 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD---LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE----------- 435 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------- 435 (626)
.|..+...|-..|+.+.|..+|++..+...+.- ..+|..-...-.+..+++.|+++++......-+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455666666677777777777777665432211 123333333444556666666666554422111
Q ss_pred c------CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 040279 436 F------GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV- 508 (626)
Q Consensus 436 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 508 (626)
+ +..+|...++.....|-++....+++++.+..+. ++...-..+..+-.+.-++++.++|++-+..=-.|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 2234455555555667777777777777775443 3333333333445556677777777776654223443
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHhhcCCCCCCCC-HHH-HHHHHHHHHccCCHhHHHHHHHHHHhhccccccccC
Q 040279 509 VTFNTLMHGFLQ---NNKTSKVVELLHKMAEPERNLVPD-DTT-FSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQP 583 (626)
Q Consensus 509 ~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~p~-~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p 583 (626)
..|+..+..+.+ ..+.+.|..+|+++++ +.+|. ..+ |...+..-.+-|.-..|.++++++-.+ .++
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~------v~~ 618 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA------VKE 618 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc------CCH
Confidence 356665554432 2356778888888876 44453 222 223333334567777777777776321 122
Q ss_pred C----chhhhhhhheeccCC---ccchhccccCCCCCCc
Q 040279 584 S----SLGSMIGCTVRLMPQ---PEMSDTLGDDGDGNAG 615 (626)
Q Consensus 584 ~----~~~~l~~~~~~~~~~---~~~~~~~~~~~p~~~~ 615 (626)
. +|..++...--..|- .+..+++++.-|++.+
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 2 244444332222232 4555677776666544
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=6.9e-15 Score=138.58 Aligned_cols=257 Identities=17% Similarity=0.132 Sum_probs=74.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFG-VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
..+.+.|++++|++++++..... .+.+...|..+.......++++.|+..++++...+ +.++..+..++..
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccccc-
Confidence 45556666666666664433322 12234444455555556666666666666666554 2344445555555
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG-PRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
...+++++|.++++...++ .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4666666666666555443 2344555556666666666666666666654322 233445555566666666666666
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
++.+++..+.. +-|......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|+..+++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66666666552 1134455555566666666666555555555442 234445555566666666666666666665554
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEM 394 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 394 (626)
.+.|+.....+..++...|+.++|.++..+.
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -STT-HHHHHHHHHHHT---------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 2235555555556666666666666555544
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1e-11 Score=112.95 Aligned_cols=285 Identities=15% Similarity=0.111 Sum_probs=177.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 040279 276 GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSL 355 (626)
Q Consensus 276 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 355 (626)
.|++.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 445555555555544443221 2223333344444555555555555554442223333344444444555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 356 YRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL-------STYNILIDGLCKNNCVQEAVKLFHM 428 (626)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (626)
+.++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555554322 3444455555555566666666666655555443332 3455555555555555555566666
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 429 LEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
....- ..++..-.+++.-+...|+.++|.++.++..+++..|+.. ....+.+-++.+.-++..++-.+.. +.++
T Consensus 255 ~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 55432 4567777788888888999999999888888876555521 1224556677777777777666542 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 509 VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
-.+.+|+..|.+.+.|.+|.++|+.+.+ ..|+..++..++.++.+.|+..+|.+..++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7888899999999999999999998888 78999999999999999999999999998876
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3e-13 Score=130.63 Aligned_cols=286 Identities=13% Similarity=0.021 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHhhHHHHHHHHHhcCChHHHHHH
Q 040279 243 NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL--NPDRFTYNSLMDGYCLVGRIDTAREI 320 (626)
Q Consensus 243 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 320 (626)
+.++|...|..+... +.-+..+...+.++|...+++++|+++|+.+.+... .-+...|.+.+-..-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885443 333445666778888888888888888888877521 1144555555432211 222333
Q ss_pred HHH-HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 040279 321 FLS-MHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQ-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN 398 (626)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (626)
+.+ +.+. .+-.+.+|.++.++|.-.++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 322 2222 2346788888888888888888888888888875 33 56777777777888888888888888887431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
+-+...|..+.-.|.+.++++.|+-.|+...+.+ |.+......+...+.+.|+.|+|+++++++..... .|+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHH
Confidence 1122344456667888888888888888887765 55677777778888888888888888888877543 35555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
.+..+...+++++|+..++++.+. ++.+...+..++..|.+.|+.+.|+.-|.-|.+ +.|.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~----ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD----LDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc----CCCc
Confidence 667777788888888888888885 233445677777788888888888888888877 5564
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=4.1e-11 Score=109.09 Aligned_cols=287 Identities=13% Similarity=0.071 Sum_probs=212.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 129 VENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
..|+|.+|+++..+..+.+-. ....|..-..+.-..|+.+.+-.++.++.+.. ..++.....+........|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHhCCC
Confidence 478999999999988777533 33445555666678899999999999988763 24666677778888888999
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHH
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL-------LTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 281 (626)
.+.|..-++++.+.+ +.++........+|.+.|+|.....++..+.+.+.-.+. .+|+.+++-....+..+.
T Consensus 169 ~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999888888765 446778888889999999999999999999888765443 356666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
-...|+..... .+.++..-..++.-+.++|+.++|.++.++..+++..+. ... .-.+.+.++.+.-++..++..+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHH
Confidence 55666665443 344566666777788888888888888888888765544 111 2234456777777777777665
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 362 NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (626)
. .+.++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 323 ~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 Q-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred h-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 3445577788888888888888888888877764 67888888888888888888888888876653
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1e-10 Score=104.33 Aligned_cols=445 Identities=12% Similarity=0.085 Sum_probs=267.5
Q ss_pred CHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 55 NLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
|+.+|+.+++.-...+..- +...| ++.++.+.|+|++|...|..+....-.|.....+.. ..+.-.|.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLA--------cc~FyLg~ 106 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLA--------CCKFYLGQ 106 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHH--------HHHHHHHH
Confidence 8999999999876544331 23333 556778999999999999988865433333333322 24556688
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchH
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKA 212 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 212 (626)
+.+|..+-.+..+ ++-.-..+.....+.|+-++-..+.+.+... ..--.+|....-..-.+.+|
T Consensus 107 Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----------~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----------LEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----------HHHHHhHHHHHHHHHHHHHH
Confidence 8999887776532 3444556667777888888877777766432 23345556655556678999
Q ss_pred HHHHHHHhhCCCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 213 KELFLEMKGRGINPAVVVCTT-LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
++++.+....+ |+-...|. +.-+|.+..-++-+.+++.-.++. ++.++.+.|..+....+.=+-..|++-...+-.
T Consensus 171 IdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 171 IDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred HHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 99999998763 44444444 445677888899999999888875 333444555544443333222233333344433
Q ss_pred cCCCCCHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040279 292 RGLNPDRFTYNSLMDGYCL-----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQ 366 (626)
Q Consensus 292 ~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 366 (626)
.+-.. |- .+.-.++ ...-+.|++++-.+.+. -+..--.++--|.+.++..+|..+.+++.. .
T Consensus 248 N~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----t 314 (557)
T KOG3785|consen 248 NIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----T 314 (557)
T ss_pred ccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC----C
Confidence 32110 11 1122222 23456777777666654 223334455567788888888888776532 1
Q ss_pred ChhhHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 040279 367 TVITYNTLLSGLFQAGQ-------AGYAQKLFDEMKLYNVEPDLS-TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI 438 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 438 (626)
++.-|..-...+...|+ ..-|...|.-.-..+..-|.. --.++..++.-..++++.+..++.+..--...|.
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~ 394 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD 394 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 22222222222333333 334444444443333222211 2233444555556788888888877755434444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN-TLMHG 517 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~ 517 (626)
..+ .+.++++..|++.+|+++|-++....++.+..-...|.++|.+.|.++.|..++-.+.. +.+..++. .+...
T Consensus 395 Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 395 FNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIAND 470 (557)
T ss_pred hhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHH
Confidence 444 46788888899999999988887755553333344567788888888888776554432 22333333 34457
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVPDDTTFS 549 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~ 549 (626)
|.+.+.+=-|.+.|..+.. +.|+++.|.
T Consensus 471 CYk~~eFyyaaKAFd~lE~----lDP~pEnWe 498 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEI----LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHhhhHHHc----cCCCccccC
Confidence 8888888778888887766 677766663
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=1.7e-09 Score=106.72 Aligned_cols=405 Identities=13% Similarity=0.053 Sum_probs=270.5
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC
Q 040279 147 GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226 (626)
Q Consensus 147 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 226 (626)
.+.-|...|..|.-+....|+++.+.+.|++..... -.....|..+...|...|.-..|..++++-......|
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 345577888888888899999999999999987654 3456788889999999999999999998877653223
Q ss_pred C-cchHHHHHHHHH-hcCCHHHHHHHHHHHHHC--C--CCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 040279 227 A-VVVCTTLIHGFC-CAGNWEEVNGLFIEMLDL--G--PRPNLLTFNVMIDCLCKG-----------GKINEANGLLELM 289 (626)
Q Consensus 227 ~-~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 289 (626)
+ +..+-..-..|. ..+..+++++.-.+.... + .......|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3 333333333443 446777777777666651 1 112233444444444322 1245677788888
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 040279 290 IQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVI 369 (626)
Q Consensus 290 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (626)
.+.+.. |+.+.-.+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+. ...|..
T Consensus 471 v~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~ 548 (799)
T KOG4162|consen 471 VQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHV 548 (799)
T ss_pred HhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhh
Confidence 776532 333333445557788999999999999998866778899999999999999999999999888765 111222
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------CC-------CCCHHHHHHHHHHHHhc---CC
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLY---------------------NV-------EPDLSTYNILIDGLCKN---NC 418 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~~~---g~ 418 (626)
....-+..-..-++.+++......+... |. .....++..+..-.... -.
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 1111222223345555555444333210 00 00111121111111100 00
Q ss_pred HHHHHHHHHHHHHCCCC--cC------HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 419 VQEAVKLFHMLEMNKFE--FG------IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
.+.. +...... |+ ...|......+.+.++.++|...+.+.... .+-....|......+...|..+
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhH
Confidence 0000 1111111 12 234566677788899999999888888764 2335667777788889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE--LLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
+|.+.|......+ +.+......+...+.+.|+..-|.. ++..+++ +.| +++.|..++..+.+.|+.++|.+.
T Consensus 702 EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr----~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 702 EAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR----LDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 9999999998853 3345688999999999999888887 9999999 888 689999999999999999999999
Q ss_pred HHHHH
Q 040279 568 SKSSY 572 (626)
Q Consensus 568 ~~~~~ 572 (626)
|..+.
T Consensus 777 f~aa~ 781 (799)
T KOG4162|consen 777 FQAAL 781 (799)
T ss_pred HHHHH
Confidence 99985
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.4e-09 Score=96.85 Aligned_cols=312 Identities=14% Similarity=0.082 Sum_probs=222.9
Q ss_pred CCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 040279 260 RPNLLTFNVMIDCLC--KGGKINEANGLLELMIQR-GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSY 336 (626)
Q Consensus 260 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 336 (626)
.|...+....+.+++ ..++...+...+-.+... -++-|......+.+++...|+.+.|+..|++....++. +....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 333333333444433 344444444444433333 25567778888999999999999999999998876311 23333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN 416 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (626)
....-.+.+.|+.++...+...+.... ......|-.-........++..|+.+-++.++.+ +-+...|..-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 344455667889988888888876541 1223334444445566788999999999888754 33455666666778889
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHH-HHH-HhcCCHHHHHH
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMI-HGL-CRKGKLEKAND 494 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~ 494 (626)
|++++|.-.|+..+... |.+...|..|+.+|...|.+.+|.-.-+...+. ++.+..+...+. ..+ .....-++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999888765 678899999999999999999998877766553 234555555542 222 23344688999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 495 FLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 495 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+++...+. .|+. ...+.+...|...|.+++++.++++.+. ..||......+++.+...+.+++|.+.|..++
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL- 498 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL- 498 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH-
Confidence 99988874 6664 4667777889999999999999999988 88999999999999999999999999999997
Q ss_pred hccccccccCCchhhh
Q 040279 574 ACLYVTIFQPSSLGSM 589 (626)
Q Consensus 574 ~~~~~~~~~p~~~~~l 589 (626)
..+|..=.++
T Consensus 499 ------r~dP~~~~sl 508 (564)
T KOG1174|consen 499 ------RQDPKSKRTL 508 (564)
T ss_pred ------hcCccchHHH
Confidence 4566664444
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=3.8e-09 Score=102.20 Aligned_cols=454 Identities=13% Similarity=0.069 Sum_probs=232.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 040279 87 KNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTG 166 (626)
Q Consensus 87 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 166 (626)
..++|...+.+.+.+++. .|....--++. +-.+...|+-++|....+..++.+ ..+.+.|..++-.+-...
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~eHgeslAmk------GL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPEHGESLAMK------GLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCccchhHHhc------cchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhh
Confidence 445666666666666653 33322222222 123445566666666666665543 225566666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHH
Q 040279 167 NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEE 246 (626)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 246 (626)
++++|++.|+.+...+ +.|...+.-+.-.-++.++++.....-..+.+.. +.....|..+..++.-.|++..
T Consensus 90 ~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777777766665 5566666666555566666666666665555541 2234456666666666677777
Q ss_pred HHHHHHHHHHCCC-CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhH-HHHHHHHHhcCChHHHH
Q 040279 247 VNGLFIEMLDLGP-RPNLLTFNVM------IDCLCKGGKINEANGLLELMIQRGLNPDRFTY-NSLMDGYCLVGRIDTAR 318 (626)
Q Consensus 247 a~~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~ 318 (626)
|..++++..+... .|+...+.-. .....+.|.+++|.+.+..-... ..|...+ ..-...+.+.++.++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 7777666655431 2343333221 12334556666666655544332 1122222 22334556667777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHH-hcCChHHHH-HHHHHHHHCCCCCChhhHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 040279 319 EIFLSMHSKGCKHTVVSYNILINGYC-KILNVEEAM-SLYRQIISNGVRQTVITYNTL-LSGLFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~ 395 (626)
.++..+... .||...|......+. +..+.-++. .+|....+.- |....-..+ +.......-.+..-+++....
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 777777666 345544444333322 233333333 4444444331 111111111 111111122233344445555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCC----------CCcCHHH--HHHHHHHHHHcCCHHHHHH
Q 040279 396 LYNVEPDLSTYNILIDGLCKNNCVQEAVKLF----HMLEMNK----------FEFGIEI--FNCLIDGLCKAGRLDNAWE 459 (626)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~----------~~~~~~~--~~~l~~~~~~~g~~~~A~~ 459 (626)
+.|+++--.. +...|-.....+--.++. ..+...+ -+|.... +-.+...+-+.|+++.|..
T Consensus 316 ~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 5554432222 222221111111001111 1111000 1333333 3345666777788888888
Q ss_pred HHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 040279 460 LFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE 538 (626)
Q Consensus 460 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (626)
+++...+. .|+ ++.|..=.+.+...|++++|..++++..+.+ .+|...=..-+.-..+++..++|.++.....+
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr-- 467 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR-- 467 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh--
Confidence 88887764 455 4455555677777888888888888887764 34443333455556677788888888777776
Q ss_pred CCCCC--C---H-HHHHHH--HHHHHccCCHhHHHHHHHHH
Q 040279 539 RNLVP--D---D-TTFSIV--VDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 539 ~~~~p--~---~-~~~~~l--~~~~~~~g~~~~A~~~~~~~ 571 (626)
.|... + . -.|..+ +.+|.+.|++.+|.+=+..+
T Consensus 468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 33211 1 1 113222 44577777777777766665
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=1.1e-08 Score=99.22 Aligned_cols=450 Identities=14% Similarity=0.099 Sum_probs=295.9
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHhhhhhhhhhhhcCCH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDF-LTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
++...+++.+.+++..|. ...+....+-.+...|+-++|....+..+.. .+.+ +.|.. ++ -.+....++
T Consensus 22 QYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv-~g------l~~R~dK~Y 91 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHV-LG------LLQRSDKKY 91 (700)
T ss_pred HHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHH-HH------HHHhhhhhH
Confidence 788889999988885444 5667766777778889999999998887764 3333 33443 22 234566789
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHH
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 213 (626)
++|++.|...+..+ +.|...|.-+.-.-.+.++++.......+..+.. +.....|..++.++.-.|+...|.
T Consensus 92 ~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 92 DEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 5577888888778888899998888888887765 556777888888888999999999
Q ss_pred HHHHHHhhCC-CCCCcchHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040279 214 ELFLEMKGRG-INPAVVVCTTLI------HGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286 (626)
Q Consensus 214 ~~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 286 (626)
.++++..+.. ..|+...+.... ....+.|..++|++.+...... +.-....-..-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999988764 245555554332 3345778888888877665443 2212223344567788999999999999
Q ss_pred HHHHhcCCCCCHhhHHHHHH-HHHhcCChHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCC
Q 040279 287 ELMIQRGLNPDRFTYNSLMD-GYCLVGRIDTAR-EIFLSMHSKGCKHTVVSYNILINGYCKILN-VEEAMSLYRQIISNG 363 (626)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~ 363 (626)
..++.. .||..-|...+. ++.+-.+.-++. .+|....+. .|....-..+--......+ .+..-.++....+.|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 999987 567766665554 443333444444 566655554 1122111111111122222 334445666677777
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 040279 364 VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL----YN----------VEPDLS--TYNILIDGLCKNNCVQEAVKLFH 427 (626)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 427 (626)
+++ ++..+...|-.....+-..++.-.+.. .| -+|... ++..+++.+-+.|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 334444444332222211122111111 10 144444 44567788889999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 428 MLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN 507 (626)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (626)
....+. |.-++.|..=.+.+...|++++|..++++..+.+ .+|...-..-+.-..+..+.++|.++.....+.|. +
T Consensus 396 ~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~ 471 (700)
T KOG1156|consen 396 LAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--G 471 (700)
T ss_pred HHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--c
Confidence 988764 3345667666788999999999999999998863 35655554666777888999999999999988763 2
Q ss_pred H--------HHHHHH--HHHHHhcCCHHHHHHHHHHh
Q 040279 508 V--------VTFNTL--MHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 508 ~--------~~~~~l--~~~~~~~g~~~~a~~~~~~~ 534 (626)
. -.|-.+ +.+|.+.|++..|++-|...
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 2 123222 45677888877776544443
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.1e-11 Score=109.08 Aligned_cols=223 Identities=10% Similarity=0.007 Sum_probs=101.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 040279 339 LINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTY-NILIDGLCKNN 417 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 417 (626)
+..+|.+.|.+.+|.+.++..++. .|-+.||..|...|.+..++..|+.++.+-.+. .|..+|| ..+...+...+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 344444444444444444444433 233334444444444444444444444444432 2222222 22333344444
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.++|.++++...+.. +.+.+...++...|.-.++++-|+.+++++++.|+. ++..|+.+.-+|...++++-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 4555555554444333 334444444444444445555555555555554443 44445555555555555555555555
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 498 YMEKNGCAPNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 498 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
+....--.|+. ..|-.+.......||+.-|.+.|+-++. -.|+ .+.++.|+-.-.+.|+.++|..+++.+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~----~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT----SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc----cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 54443222222 2444444444455555555555555444 2332 344555554445555555555555544
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=4e-11 Score=123.70 Aligned_cols=273 Identities=11% Similarity=-0.018 Sum_probs=192.4
Q ss_pred CCCCHhhHHHHHHHHH-----hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh-hhhh--hhhhcCCHHHHHHHHHH
Q 040279 71 PSPPISSFNLLFGAVA-----KNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG-NKER--GLCVENRIKEATWLFKN 142 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~-~l~~--~~~~~~~~~~A~~~~~~ 142 (626)
+..+...|...+.+.. ..+++++|+.+|++.++. .|+.......++.+. .+.. .....+++++|...+++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 4456676666666542 235689999999999876 676654443333221 1111 12355678999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC
Q 040279 143 MIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR 222 (626)
Q Consensus 143 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (626)
.++.+ +.+..++..+..++...|++++|...|+++++.+ |.+...+..+...+...|++++|...+++..+.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99875 4477888888899999999999999999999887 667788888999999999999999999999887
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-hh
Q 040279 223 GINPA-VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDR-FT 300 (626)
Q Consensus 223 ~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 300 (626)
. |+ ...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...++++... .|+. ..
T Consensus 402 ~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~ 477 (553)
T PRK12370 402 D--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIA 477 (553)
T ss_pred C--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHH
Confidence 4 33 23344455557778999999999999887643334556777888888999999999999887665 3343 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKG-CKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
.+.+...|...| +.|...++.+.+.. ..+....+ +-..+.-.|+-+.+... +++.+.
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 444555666666 47777777765531 11222222 44445556777777666 777765
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.1e-11 Score=109.18 Aligned_cols=234 Identities=13% Similarity=0.059 Sum_probs=202.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 040279 302 NSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQA 381 (626)
Q Consensus 302 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (626)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.+|-.+...|.+..+...|+.++.+-.+. .+-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57889999999999999999998887 567889999999999999999999999998886 344554455667888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELF 461 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 461 (626)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+..++++...| ..+++.|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998764 5567777778888889999999999999999998 458899999999999999999999999
Q ss_pred HhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 462 HKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 462 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
++....--.|+ ...|..+.......|++..|.+.|+-...++ ..+...++.|.-.-.+.|+.++|..++..+.+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--- 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--- 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh---
Confidence 99877433344 5679999999999999999999999999875 55678999999989999999999999999987
Q ss_pred CCCCCH
Q 040279 540 NLVPDD 545 (626)
Q Consensus 540 ~~~p~~ 545 (626)
+.|+.
T Consensus 458 -~~P~m 462 (478)
T KOG1129|consen 458 -VMPDM 462 (478)
T ss_pred -hCccc
Confidence 77763
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=3.1e-10 Score=113.18 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=164.3
Q ss_pred HHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHH
Q 040279 61 YFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLF 140 (626)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~ 140 (626)
.++..+...|..|+.++|..+|.-|+..|+.+.|- +|..|.......+...++.++. +....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~-------sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVA-------SHKEANDAENPK--- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHh-------cccccccccCCC---
Confidence 34556666788899999999999999999999998 8888887666677778887763 445566666555
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCCccccccHHH-------------HHHHHHHHH
Q 040279 141 KNMIAFGVRPDVITYGTLINGFCRTGNLSV---ALRLHKKMVSGDYENGLISKTNIFS-------------YSIIIDSLC 204 (626)
Q Consensus 141 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~ 204 (626)
.|...+|..|..+|...||+.. ..+.++.+...-...|.+ .+.... -...+....
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 5788899999999999999765 222122221111001110 011111 112233333
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAG-NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
-.|-++.+++++..++..... . ....+++-+.... .+++-....+...+ .|+..+|..++..-...|+.+.|.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHH
Confidence 344455555555444332100 0 1111233222222 22333222222222 478888888888888888999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN 348 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (626)
.++..|.+.|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999888888888777666654 77788888888888888888888888877766666444
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=3.4e-09 Score=104.61 Aligned_cols=438 Identities=12% Similarity=0.033 Sum_probs=275.7
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCC
Q 040279 71 PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRP 150 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (626)
.+-+...|..+.-++.+.|+++.+.+.|++....-+ -....|..+ ...|...|.-..|..+++........|
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~-------als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQL-------ALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHH-------HHHHHHhccchHHHHHHHhhcccccCC
Confidence 445788999999999999999999999999874322 222333332 234566777888999998877654334
Q ss_pred C-HhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc-----------CCcchHHHHHH
Q 040279 151 D-VITYGTLINGFC-RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE-----------GLVDKAKELFL 217 (626)
Q Consensus 151 ~-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~ 217 (626)
+ ...+-..-..|. +.+..++++.+..+++....... .......|..+.-+|... ....++++.++
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 3 333333333443 46778888888888776221000 122344455555555432 12457788888
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040279 218 EMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD 297 (626)
Q Consensus 218 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (626)
+..+.+. -|+.+...+.--|+..++.+.|.+..++.++.+..-+...|..+.-.+...+++.+|+.+.+.....- ..|
T Consensus 469 ~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N 546 (799)
T KOG4162|consen 469 EAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDN 546 (799)
T ss_pred HHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhh
Confidence 8877642 24444444455577889999999999999988767788899999999999999999999998877651 111
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN--GVRQTVITYNTLL 375 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~ 375 (626)
......-+..-...++.++++.....+...- -+.... .+.++-...++....+.-. .....+.++..+.
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 1111122233334677777777666655420 000000 1111111122222111100 0111122232222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVE--PD------LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDG 447 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (626)
......+........ +.+..+. |+ ...+......+.+.++.++|...+.+..... +.....|......
T Consensus 618 ~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 221111110000000 1111111 22 1234455566778889999988887777554 5567778888888
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKAND--FLLYMEKNGCAPNVVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (626)
+...|+..+|.+.|...... .|+ +.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|-.++..+.+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch
Confidence 88999999999999998875 344 6788899999999998888887 999999976 66889999999999999999
Q ss_pred HHHHHHHHHhhc
Q 040279 525 SKVVELLHKMAE 536 (626)
Q Consensus 525 ~~a~~~~~~~~~ 536 (626)
++|.+.|..+.+
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=1.5e-10 Score=119.55 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 131 NRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR---------TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
+++++|+..|++.++.. +.+...|..+..++.. .+++++|...++++++.+ |.+...+..+..
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~ 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence 34667778888777663 2234455555444432 234677777777777765 566667777777
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 281 (626)
.+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHH
Confidence 7777777777777777777663 334556666777777777777777777777775443 22223333444555677777
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
|...++++.+...+-+...+..+..++...|++++|...++++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 77777776654322234445556666667777777777776665442 112233444444555555 355555555544
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=1.6e-08 Score=100.70 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=37.2
Q ss_pred HHhcC-CHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 518 FLQNN-KTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 518 ~~~~g-~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+.+.. -.++|.++++-+.+ ..| +..+|..-..+|.+.|++--|.+.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~----~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLE----LAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHH----hCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33444 44889999999887 555 467888888899999999888877765
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=4.1e-10 Score=103.64 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGL 448 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (626)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 445555666666666666666666665542 3334556666666777777777777777666554 34455666667777
Q ss_pred HHcCCHHHHHHHHHhcccCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGL-VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 527 (626)
...|++++|.+.++++.+... ......+..+..++...|++++|.+.+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777765321 1234456667777888888888888888887753 33456777777888888888888
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 528 VELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 528 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...++++.+ . .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQ--T-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHH--h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888877 2 12345666677777788888888888877764
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.3e-07 Score=90.93 Aligned_cols=457 Identities=13% Similarity=0.076 Sum_probs=268.4
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
.+..-+......| ++++|.+.-+.++..+|. +..++..-+.++.+.++|++|+.+.+.-... ..-+...+. .+
T Consensus 14 ~l~t~ln~~~~~~--e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fE---KA 86 (652)
T KOG2376|consen 14 ALLTDLNRHGKNG--EYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFE---KA 86 (652)
T ss_pred HHHHHHHHhccch--HHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHH---HH
Confidence 3444455555555 899999999999998765 6777777778899999999999666543211 011112122 22
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (626)
| +..+.+..++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+.. ..+...-..+
T Consensus 87 Y-----c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-----d~d~~~r~nl 152 (652)
T KOG2376|consen 87 Y-----CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-----DQDEERRANL 152 (652)
T ss_pred H-----HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-----hHHHHHHHHH
Confidence 3 4568899999999998332 224557777788899999999999999999877621 1222222222
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCCC------h
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL---IHGFCCAGNWEEVNGLFIEMLDLG-------PRPN------L 263 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~ 263 (626)
+..-.. ..+. +.+.... .| ..+|..+ ...+...|++.+|+++++...+.+ -.-+ .
T Consensus 153 ~a~~a~----l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 153 LAVAAA----LQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHh----hhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 222111 1111 2222222 22 3344433 345668899999999999883221 1100 1
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHH---HHHhcCC-hH-HHHHHHHHHHhcCC--------
Q 040279 264 L-TFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMD---GYCLVGR-ID-TAREIFLSMHSKGC-------- 329 (626)
Q Consensus 264 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~g~-~~-~a~~~~~~~~~~~~-------- 329 (626)
. .-..+.-++...|+.++|..++...++.+. +|........+ +.....+ ++ .++..++.......
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 122345567789999999999999998853 34432222211 1111111 11 12222222221100
Q ss_pred --CCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHH
Q 040279 330 --KHTVVSY-NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF--QAGQAGYAQKLFDEMKLYNVEPDLS 404 (626)
Q Consensus 330 --~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~ 404 (626)
.-..... +.++..| .+..+.+.++...... ..|. ..+..++.... +...+..+..++...-+........
T Consensus 303 ~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~ 377 (652)
T KOG2376|consen 303 KKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV 377 (652)
T ss_pred HHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH
Confidence 0011111 1222222 2333344333332221 1223 33334443322 2234677777777776543222345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC--CCCCC--
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFH--------MLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK--GLVPT-- 472 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~-- 472 (626)
+...+++.....|+++.|..++. .+.+.+ ..+.+...++..+.+.++-+.|..++.+.... ...+.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 66677788889999999999998 555443 34556677778888888877777777665441 11112
Q ss_pred --HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 473 --VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 473 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..++..++..-.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-+.+..
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 2234444455567899999999999999975 77888999999999776 67888887777643
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=7.7e-10 Score=101.78 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=126.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666665542 2234555556666666666666666666666543 3344455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+...|++++|...++....... +.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6667777777777766654321 2234455566677777777777777777776642 2245567777777777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888777765 244555666666777777788887777776654
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=2.7e-08 Score=99.14 Aligned_cols=293 Identities=15% Similarity=0.111 Sum_probs=158.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH-HHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT-TLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~ 236 (626)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+++ |+...|. .+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 344555666777777766654433 23445555566666666677777777777766663 3433333 3333
Q ss_pred HHHh-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 237 GFCC-----AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKIN-EANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 237 ~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
+... ..+.+...++++++...- |.......+.-.+.....+. .+...+..+...|++ .+|+.+-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 3311 124555666666665432 22222211111111112222 234455555566644 234444444444
Q ss_pred cCChHHHHHHHHHHHhc----C----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 311 VGRIDTAREIFLSMHSK----G----------CKHTVVSY--NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTL 374 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 374 (626)
..+.+-..+++...... + -+|+...| ..+...|...|++++|++++++.++.. +..+..|..-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~K 234 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTK 234 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 33444444444443321 0 12333223 444566667777778887777777762 2235666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--------HHHHHHHH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI--------EIFNCLID 446 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~l~~ 446 (626)
...+-+.|++.+|.+.++.....+ ..|...-+-.+..+.+.|+.++|.+++....+.+..|.. ........
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 777777788888877777777654 345555555666677777888887777776655432221 11234556
Q ss_pred HHHHcCCHHHHHHHHHhccc
Q 040279 447 GLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~ 466 (626)
+|.+.|++..|++.|..+.+
T Consensus 314 a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 67777887777766665544
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2e-07 Score=89.64 Aligned_cols=447 Identities=15% Similarity=0.118 Sum_probs=259.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLI 159 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 159 (626)
+=++.+..+|++++|.....+++..+..+....+..+ .++.+.+.|++|+.+.+.-... ..+..-+ +=
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKv--------ValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fE 84 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKV--------VALIQLDKYEDALKLIKKNGAL--LVINSFF--FE 84 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhH--------hhhhhhhHHHHHHHHHHhcchh--hhcchhh--HH
Confidence 3445667889999999999999977533333333334 3567889999999665543321 1111111 23
Q ss_pred HHH--HhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC-CcchHHHHHH
Q 040279 160 NGF--CRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP-AVVVCTTLIH 236 (626)
Q Consensus 160 ~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~ 236 (626)
.+| .+.+..++|+..++-.. +.+..+...-...+-+.|++++|+++|+.+.+.+.+- +...-..++.
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHcccHHHHHHHHhccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 444 47899999999998331 3445577777888899999999999999998764321 1111112221
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHhcC--------CC-----CCHh-
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVM---IDCLCKGGKINEANGLLELMIQRG--------LN-----PDRF- 299 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~~- 299 (626)
+-. +... +.+......| ..+|..+ ...+...|++.+|+++++...+.+ .. .+..
T Consensus 155 ~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 155 VAA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 111 1111 0111211222 3344443 345667899999999999883321 00 0011
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH----HHHHHHHHhcCCh-H-HHHHHHHHHHHCC----------
Q 040279 300 TYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSY----NILINGYCKILNV-E-EAMSLYRQIISNG---------- 363 (626)
Q Consensus 300 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~A~~~~~~~~~~~---------- 363 (626)
.-..+.-.+...|+.++|..++..+...... |.... |.++ ++....++ + .++..++......
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~ 303 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK 303 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1123444566789999999999999988543 33222 2222 22221111 1 2222222221110
Q ss_pred -CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCcCHHH
Q 040279 364 -VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLC--KNNCVQEAVKLFHMLEMNKFEFGIEI 440 (626)
Q Consensus 364 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (626)
-......-+.++..| .+..+.+.++...... ..|... +..++..+. +.....++..++....+........+
T Consensus 304 ~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v 378 (652)
T KOG2376|consen 304 KQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVV 378 (652)
T ss_pred HHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHH
Confidence 000111112223333 2344444444433322 233333 333443332 22356777777777766543334566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--------hcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH--
Q 040279 441 FNCLIDGLCKAGRLDNAWELFH--------KLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN--GCAPNV-- 508 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~-- 508 (626)
....++.....|+++.|++++. .+.+.+.. +.+..++...+.+.++.+.|..++.+.+.. .-.+..
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 7777888899999999999999 55554433 445556677788888877788887777642 111222
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 509 --VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 509 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.++..+...-.+.|+.++|...++++++ ..| |..+...++.+|.+.. .+.|+.+-+..
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k----~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVK----FNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHH----hCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 2344444455678999999999999998 555 6788888888888764 67888776665
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.7e-09 Score=98.16 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=88.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
+..+..|+++.|+.+|.+.+... +++...|+.-..+|...|++++|++=-.+-++.. |.-...|+....++.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAALF 81 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHHH
Confidence 45678899999999999999886 5588889999999999999999999888887765 566778999999999
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGF 238 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (626)
-.|++++|+..|.+-.+.. +.+...++-+..++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999999999988763 33455666666665
No 76
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=5.7e-09 Score=104.47 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 040279 191 TNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMI 270 (626)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 270 (626)
++..+|..++..-...|+.+.|..++.+|+++|++.+..-|-.|+-+ .++..-+..+++-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 56677777777777777777777777777777777666655555544 666666677777777777777777777766
Q ss_pred HHHHhcCC
Q 040279 271 DCLCKGGK 278 (626)
Q Consensus 271 ~~~~~~~~ 278 (626)
..+.++|.
T Consensus 279 ip~l~N~~ 286 (1088)
T KOG4318|consen 279 IPQLSNGQ 286 (1088)
T ss_pred Hhhhcchh
Confidence 66666444
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.1e-07 Score=85.48 Aligned_cols=203 Identities=15% Similarity=0.043 Sum_probs=110.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
...+++.|+.+-++.++... .+...+-.-...+...++.++|.-.|+...... +-+...|..++.+|...|.+.+|..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 34455555555555554321 122333333344555566666666665555431 2344566666666666666666655
Q ss_pred HHHHHHHCCCCcCHHHHHHHH-HHHH-HcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 425 LFHMLEMNKFEFGIEIFNCLI-DGLC-KAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
.-+...+. ++.+..+...+. ..+. ...--++|.+++++.... .|+ ....+.+...+...|..+.++.++++...
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 55433322 123333333331 1221 122235677777766653 455 34556666667777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHcc
Q 040279 502 NGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKD 558 (626)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 558 (626)
. .||....+.|...+...+.+++|.+.|..+++ +.|+...-..-.+.+.+.
T Consensus 467 ~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr----~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 467 I--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR----QDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred h--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCccchHHHHHHHHHHhc
Confidence 3 56777777777777777777777777777776 667443333333444443
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=2e-09 Score=105.71 Aligned_cols=240 Identities=16% Similarity=0.103 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHh-----CC-CC
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIISN-----G-VRQTVI-TYNTLLSGLFQAGQAGYAQKLFDEMKL-----YN-VE 400 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~ 400 (626)
.+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++.. .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444555666666666666666555443 1 012222 223456677777777777777777653 11 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--C-CCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CC
Q 040279 401 PD-LSTYNILIDGLCKNNCVQEAVKLFHMLEM---N--K-FEFG-IEIFNCLIDGLCKAGRLDNAWELFHKLPQK---GL 469 (626)
Q Consensus 401 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 469 (626)
|. ..+++.|...|.+.|++++|...++...+ . + ..+. ...++.+...+...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 21 23566666677788888777777765432 1 1 1111 224556667788888888888888766541 11
Q ss_pred CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-
Q 040279 470 VPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GC--AP-NVVTFNTLMHGFLQNNKTSKVVELLHKMAEP- 537 (626)
Q Consensus 470 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 537 (626)
.++ ..+++.|...|.+.|++++|.++++++++. +. .+ ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 122 457899999999999999999999998753 11 11 2356788889999999999998888876431
Q ss_pred -CCCC-CCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 538 -ERNL-VPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 538 -~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.+|. .|+ ..+|..|+..|.+.|++++|.++.+.+.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1221 233 46799999999999999999999999864
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=2e-07 Score=94.88 Aligned_cols=505 Identities=11% Similarity=-0.000 Sum_probs=266.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHH
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPD-FLTLNILIN 118 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~ 118 (626)
.+..+-.-|+... |...|.+.|+.+-+.++. +..++......|++..+|+.|..+.-...+. .|- ...++..-
T Consensus 494 af~~LG~iYrd~~--Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~- 567 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSD--DMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQ- 567 (1238)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhh-
Confidence 3444444455544 677888888888777665 7778888888888888888888774433322 111 11222221
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSI 198 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (626)
++-.|...++...|+..|+...+.. +-|...|..++.+|...|++..|+++|.++...+ |.+...-.-
T Consensus 568 ----rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P~s~y~~fk 635 (1238)
T KOG1127|consen 568 ----RGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------PLSKYGRFK 635 (1238)
T ss_pred ----ccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------cHhHHHHHH
Confidence 3456777888888888888888765 4477788888888888888888888888887654 333333333
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCC------CCCCcchHHHHHHHHHhcCCHHHHHHHHHH-------HHHCCCCCChhh
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRG------INPAVVVCTTLIHGFCCAGNWEEVNGLFIE-------MLDLGPRPNLLT 265 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~ 265 (626)
.....+..|.+.+|+..+..+...- ..--..++..+...+...|-..++.+.+++ ........+...
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445566788888888887765430 001112222222223333333333333333 222221112223
Q ss_pred HHHHHHHHHhcCCHH------HHHHHHH-HHHhcCCC--------------------CCHhhHHHHHHHHHh----cC--
Q 040279 266 FNVMIDCLCKGGKIN------EANGLLE-LMIQRGLN--------------------PDRFTYNSLMDGYCL----VG-- 312 (626)
Q Consensus 266 ~~~l~~~~~~~~~~~------~a~~~~~-~~~~~~~~--------------------~~~~~~~~ll~~~~~----~g-- 312 (626)
|..+..+|.-.-..+ ....++. +....+.- .+..+|..+...|.+ .+
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 333222221110000 0001111 11111111 112233333332222 11
Q ss_pred --ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 040279 313 --RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKL 390 (626)
Q Consensus 313 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 390 (626)
+...|+..+....+..- .+..+|+.+.-. ...|++.-|.-.|-+-... .+....+|..+...+.+..+++.|...
T Consensus 796 ~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred chhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHH
Confidence 12345555555544321 144455554433 5556666666555554443 233556677777777777888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HH--HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 391 FDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHM--LE--MNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
|...+... +.+...+..........|+.-++..+|.. .. ..|--++..-|-+........|+.++-+...+.+..
T Consensus 873 f~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 873 FSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 88877643 33444454444444456777777777754 11 122234444444444555666666655444444322
Q ss_pred C---------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHH
Q 040279 467 K---------GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-GCAPNVVTFN----TLMHGFLQNNKTSKVVELLH 532 (626)
Q Consensus 467 ~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~ 532 (626)
. +.+.+...|...+...-+.+.+..|.+...+.... ...-+...++ .+.+.++..|.++.|...+.
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc
Confidence 1 33445667777777777778888887777665421 0122333333 34455566677765554433
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 533 KMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 533 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.... ..+..+.. .--.+.-.|+++++.+.|+++.
T Consensus 1032 ~~~~-----evdEdi~g-t~l~lFfkndf~~sl~~fe~aL 1065 (1238)
T KOG1127|consen 1032 KEWM-----EVDEDIRG-TDLTLFFKNDFFSSLEFFEQAL 1065 (1238)
T ss_pred ccch-----hHHHHHhh-hhHHHHHHhHHHHHHHHHHHHh
Confidence 3221 11111111 1111244678888888888875
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.7e-08 Score=95.33 Aligned_cols=220 Identities=11% Similarity=0.033 Sum_probs=152.1
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 129 VENRIKEATWLFKNMIAFG-VRP--DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
..+..+.++.-+.+++... ..| ....|..+...+...|++++|...|++.++.+ |.+...|+.+...+..
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQ 110 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 3456677888888887542 122 23557888888999999999999999999876 6778899999999999
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (626)
.|++++|.+.|+...+.. +-+..+|..+..++...|++++|.+.|+...+..+. ..........+...++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999998763 224667888888889999999999999999886433 22222223334456789999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 286 LELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK---GC---KHTVVSYNILINGYCKILNVEEAMSLYRQI 359 (626)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (626)
+++..... .++... .. ......|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|+..|++.
T Consensus 188 l~~~~~~~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97655432 233222 12 223345555443 344444321 10 112356777788888888888888888888
Q ss_pred HHCC
Q 040279 360 ISNG 363 (626)
Q Consensus 360 ~~~~ 363 (626)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 8764
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=6e-09 Score=88.05 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=151.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
...+.-.|...|+...|.+-+++.++++ +.+..++..+...|.+.|+.+.|.+.|+...... +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456667888888888888888888864 4455678888888888888888888888888765 5577788888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
.|++++|...|++....-.-+ -..+|..++.+..+.|+.+.|.+.|++..+.. +-...+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 888999988888887741111 25678888888888888999999888888864 4456677788888888888888888
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 530 LLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 530 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+++.... .+ .++..++...+.+-.+.|+.+.|.++=....
T Consensus 195 ~~~~~~~--~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQ--RG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHh--cc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888876 33 3788888888888888888887777666553
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=8.3e-09 Score=101.41 Aligned_cols=244 Identities=19% Similarity=0.192 Sum_probs=133.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHH-HHHHHHHHhcCCcchHHHHHHHHhhC-----C-
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY-SIIIDSLCKEGLVDKAKELFLEMKGR-----G- 223 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 223 (626)
-..+...+...|...|+++.|..+++..++.-........+...+. +.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999998764000000012333333 33666777888888888888877542 1
Q ss_pred CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 040279 224 INP-AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL-----GP-RPNLL-TFNVMIDCLCKGGKINEANGLLELMIQR--- 292 (626)
Q Consensus 224 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 292 (626)
..| -..+++.|...|.+.|++++|...+++..+. +. .|.+. .++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 111 1245666666777778777777766665431 11 11111 3445556666677777777766654432
Q ss_pred CCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 293 GLNP----DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKG-------CKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 293 ~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
-+.+ -..+++.|...|...|++++|.++++.+.... ..-....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 0111 12345556666666666666666666554431 011123344555555555555555555544322
Q ss_pred C----CC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 040279 362 N----GV--RQTVITYNTLLSGLFQAGQAGYAQKLFDEM 394 (626)
Q Consensus 362 ~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 394 (626)
- |+ +....+|..|...|...|++++|.++.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 11 111234445555555555555555554444
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.1e-08 Score=86.62 Aligned_cols=194 Identities=14% Similarity=0.048 Sum_probs=106.3
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
++-+|..+|++..|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.++.. |.+..+.|.....
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNNYG~F 112 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhhhhHH
Confidence 3445666666666666666666553 2234455556666666666666666666666554 4455555556666
Q ss_pred HHhcCCcchHHHHHHHHhhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRG-INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 281 (626)
+|..|++++|...|++....- ..-...+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 666666666666666655431 1112345555555555666666666666665554322 33344555555556666666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHS 326 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 326 (626)
|...++.....+. ++..+.-..|..--..|+.+.+.++=.++..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666655555543 4555555555555555555555554444433
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=2.7e-07 Score=90.71 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRK 100 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (626)
|+++.|..+++.. +.+|. ....|-.+...-...|+.--|.+.|..
T Consensus 458 ~df~ra~afles~-~~~~d-a~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 458 GDFDRATAFLESL-EMGPD-AEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred CchHHHHHHHHhh-ccCcc-HHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6999999998875 33332 234577777766677776666665543
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.4e-08 Score=92.55 Aligned_cols=402 Identities=14% Similarity=0.080 Sum_probs=243.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC-cchHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA-VVVCTTLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~ 236 (626)
-..+.+..|+++.|+.+|-..+..+ |+|...|+.-..+|++.|++++|++=-.+-++. .|+ ...|.-...
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGA 78 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHH
Confidence 3456778999999999999999887 678889999999999999999998877766665 343 467888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH---HHHHHHHHhcC---CCCCHhhHHHHHHHHHh
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA---NGLLELMIQRG---LNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~ll~~~~~ 310 (626)
++.-.|++++|+.-|.+-++..+. +...++-+..++.......+. -.++..+.... .......|..++..+-+
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 999999999999999998886432 555666666655111000000 00111110000 00001112222211110
Q ss_pred c-------CChHHHHHHHHHHHh--------cC-------CCC----------------------ChhhHHHHHHHHHhc
Q 040279 311 V-------GRIDTAREIFLSMHS--------KG-------CKH----------------------TVVSYNILINGYCKI 346 (626)
Q Consensus 311 ~-------g~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~ 346 (626)
. ...+...+..-.+.. .+ ..| -..-...+.++..+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0 001111111100000 00 011 011234456666677
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhcCCH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNI-------LIDGLCKNNCV 419 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~ 419 (626)
.+++.|++.+....+.. .+..-++....+|...|.+..+...-+...+.|. -...-|+. +..+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 77888888888877763 3555566666777888887777776666655442 12222332 33345556677
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 420 QEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLY 498 (626)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (626)
+.++..|.+.......|+. ..+....+++.+..+...-. .|.. .-.-.-...+.+.|++..|+..|.+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 7777777765543222221 22233344444444443332 2222 1112225667788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhhccc
Q 040279 499 MEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYRACLY 577 (626)
Q Consensus 499 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 577 (626)
+++.+ +-|...|....-+|.+.|.+..|+.-.+..++ +.|+ ...|..-+.++....+|++|.+.|++.+
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie----L~p~~~kgy~RKg~al~~mk~ydkAleay~eal----- 453 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE----LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL----- 453 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 88875 66778888888899999999999999888888 6775 4557777788888888999999888886
Q ss_pred cccccCCc--hhhhhhhhee
Q 040279 578 VTIFQPSS--LGSMIGCTVR 595 (626)
Q Consensus 578 ~~~~~p~~--~~~l~~~~~~ 595 (626)
..+|+. ....+..|..
T Consensus 454 --e~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 454 --ELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred --hcCchhHHHHHHHHHHHH
Confidence 446666 3333445444
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=5.6e-08 Score=85.19 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=55.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
-+...+..+.+.. ++.+|++++....+..|. +......|+.+|.+..++..|...|+++-.. .|...-|...-
T Consensus 12 eftaviy~lI~d~--ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~-- 84 (459)
T KOG4340|consen 12 EFTAVVYRLIRDA--RYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQ-- 84 (459)
T ss_pred chHHHHHHHHHHh--hHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHH--
Confidence 3555555556554 677777777666655443 5566666666666777777777777776654 44444443322
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMI 144 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~ 144 (626)
.+.+.+.+.+.+|+.+...|.
T Consensus 85 ----AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 85 ----AQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred ----HHHHHHhcccHHHHHHHHHhc
Confidence 244555666666666666554
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.16 E-value=1.2e-06 Score=89.54 Aligned_cols=542 Identities=11% Similarity=-0.034 Sum_probs=294.8
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 53 IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 53 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
.+++++|...|+..++..|. |...|..++.+|.++|.+..|+.+|.++... .|+..--..-. ....+..|.
T Consensus 575 a~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~------A~~ecd~Gk 645 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKE------AVMECDNGK 645 (1238)
T ss_pred ccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHH------HHHHHHhhh
Confidence 36899999999999998776 8999999999999999999999999998865 55443222222 135677899
Q ss_pred HHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCCccccccHHHHHHH
Q 040279 133 IKEATWLFKNMIAFG------VRPDVITYGTLINGFCRTGNLSVALRLHKKMV-------SGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l 199 (626)
+.+|+..+..+.... ...-..++......+.-.|-..+|...+++.+ ... ...+...|-.+
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~------~~~~~~~Wi~a 719 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS------LQSDRLQWIVA 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh------hhhhHHHHHHH
Confidence 999999998876531 11122334444444444444444444444332 222 01112222221
Q ss_pred HHHHHhcCC--cch----HHHHHHH-HhhCC--------------------CCCCcchHHHHHHHHHh----c----CCH
Q 040279 200 IDSLCKEGL--VDK----AKELFLE-MKGRG--------------------INPAVVVCTTLIHGFCC----A----GNW 244 (626)
Q Consensus 200 ~~~~~~~g~--~~~----A~~~~~~-~~~~~--------------------~~~~~~~~~~li~~~~~----~----~~~ 244 (626)
..++.-.-. ++. -..++.. ....+ ...+..+|..|+..|.+ . .+.
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 111110000 000 0001100 11111 11234566666655543 1 223
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 245 EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSM 324 (626)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 324 (626)
..|+..+...++.... +..+|+.+.-. ...|++.-+...|-+..... +....+|..+...+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 4677777777665322 55566665544 56677777777776655542 446667777778888889999999999988
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH--HH--CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----
Q 040279 325 HSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQI--IS--NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL---- 396 (626)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 396 (626)
....+ .+...|--........|+.-++..+|..- .. .|-.++..-|..........|+.++-+...+++..
T Consensus 877 qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 87642 25556655555556678888888887762 22 23333443343333444555655544333333211
Q ss_pred -----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHH----HHHHHHHHcCCHHHHHHHHHhccc
Q 040279 397 -----YNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN-KFEFGIEIFN----CLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 397 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
.+.+.+...|.......-..+.+..|.....++... ....+...|+ .+.+.++..|.++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 123445566776666666666666666665543310 0012223333 344556667777777665554332
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC
Q 040279 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-CAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
. .+..+...-+.. .-.++++++.+.|+++..-- -.-+ ......++.+....+..+.|...+-+... --+|+
T Consensus 1036 e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~---ls~~~ 1108 (1238)
T KOG1127|consen 1036 E---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS---LSKVQ 1108 (1238)
T ss_pred h---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH---hCccc
Confidence 1 122222111212 33578899999999887631 1122 23445555566677778888887777665 12345
Q ss_pred HHHHHHHHHHHHccCCH---hHHHHHHHHHHhhccccccccCCc-hhhhhhhheeccCCccchhccccCCCCCCchhHHH
Q 040279 545 DTTFSIVVDLLAKDEKY---HECSAVSKSSYRACLYVTIFQPSS-LGSMIGCTVRLMPQPEMSDTLGDDGDGNAGPIILS 620 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 620 (626)
..+...+...+.-..+- .-+.+-+++..+.... -.+|.. -..++...+|..--.....|+.--+|.|+.-+-++
T Consensus 1109 ~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~--~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1109 ASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF--CWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLL 1186 (1238)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh--ccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHH
Confidence 55555554443332222 2233333332211110 111111 22233333333333556677888888888887776
Q ss_pred HH
Q 040279 621 AV 622 (626)
Q Consensus 621 ~~ 622 (626)
.+
T Consensus 1187 ~v 1188 (1238)
T KOG1127|consen 1187 SV 1188 (1238)
T ss_pred HH
Confidence 54
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=4.6e-08 Score=92.34 Aligned_cols=224 Identities=14% Similarity=0.056 Sum_probs=157.0
Q ss_pred HhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 040279 86 AKNRHYDAVISFYRKLVSIG-LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR 164 (626)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 164 (626)
...+..+.++.-+.+++... ..|+... .. +..++..+...|+.++|...|++.++.. +.+...|+.+...+..
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a-~~----~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERA-QL----HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhH-HH----HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34456677888888887542 1222211 11 1123457888999999999999999875 4468899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCH
Q 040279 165 TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNW 244 (626)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 244 (626)
.|++++|...|++.++.+ |.+..++..+...+...|++++|.+.|+...+.. |+..........+...++.
T Consensus 111 ~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDP 181 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCH
Confidence 999999999999999876 6677888999999999999999999999998863 4433222222334467789
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC---CCCHhhHHHHHHHHHhcCChHHHH
Q 040279 245 EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR---GL---NPDRFTYNSLMDGYCLVGRIDTAR 318 (626)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~ll~~~~~~g~~~~a~ 318 (626)
++|.+.|.+..... .++...+ .+. ....|+...+ ..++.+.+. .+ +.....|..+...+.+.|++++|.
T Consensus 182 ~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 182 KQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999997765432 2232222 222 2335555443 244444422 11 112357888899999999999999
Q ss_pred HHHHHHHhcCC
Q 040279 319 EIFLSMHSKGC 329 (626)
Q Consensus 319 ~~~~~~~~~~~ 329 (626)
..|++..+.++
T Consensus 257 ~~~~~Al~~~~ 267 (296)
T PRK11189 257 ALFKLALANNV 267 (296)
T ss_pred HHHHHHHHhCC
Confidence 99999998753
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=4.1e-07 Score=89.51 Aligned_cols=201 Identities=10% Similarity=-0.012 Sum_probs=112.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 153 (626)
.-.|..+...+...|+.+.+...+.+..+... .++...... +. +..+...|++++|...+++..+.. +.+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~-----a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~ 78 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VE-----ALSAWIAGDLPKALALLEQLLDDY-PRDLL 78 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HH-----HHHHHHcCCHHHHHHHHHHHHHHC-CCcHH
Confidence 34555666666666777776666665543311 122222222 11 124556677777777777777652 33333
Q ss_pred HHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc
Q 040279 154 TYGTLINGFC----RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229 (626)
Q Consensus 154 ~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (626)
.+.. ...+. ..+....+.+.++..... .+........+...+...|++++|.+.+++..+.. +.+..
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~ 149 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAW 149 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcH
Confidence 3332 11222 234444444444431111 23334444555666777777777777777777663 33455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPR-PNL--LTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
.+..+...+...|++++|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6667777777777777777777777664321 121 2344566677777777777777777653
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2e-07 Score=81.81 Aligned_cols=396 Identities=12% Similarity=0.073 Sum_probs=245.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
+..++..+.+..++..|++++..-.+. .|....-.++++ ..|....++..|...++++-.. .|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLg------yCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLG------YCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHH------HHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 455666778888999999999877765 555555555554 4577888899999999998765 555555543
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 158 -LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 158 -li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
-...+.+.+.+..|+.+...+.... ..-......-....-..+++..+..+.++....| +..+.+...-
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNP-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 3556678899999999998875421 0111111112223345788999999988887543 5556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------C------
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNP-------------D------ 297 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~------ 297 (626)
...+.|+++.|.+-|+...+-+--.....|+..+.. .+.|+.+.|++...++.++|++. |
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 667899999999999998876544456677766654 47788999999999888876431 1
Q ss_pred ---------HhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040279 298 ---------RFTYNSLMDGYCLVGRIDTAREIFLSMHSKG-CKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT 367 (626)
Q Consensus 298 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (626)
...+|.-...+.+.|+++.|.+.+-.|.-+. .+.|+.|...+.-.- ..+++.+..+-+.-+...++ -.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 1234555567788999999999888886432 234556554443221 24556666666666666533 45
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVE-PDLSTYNILIDGLC-KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
..||..++-.|++..-++.|-+++.+-.....+ .+...|+. ++++. -.-..++|.+-++.+...- .........-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~v 387 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQV 387 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 678888999999999999888887765432211 23344443 33333 3446677766665443211 00011111111
Q ss_pred HHHHHcCC---HHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 446 DGLCKAGR---LDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 446 ~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+--...++ +..+++-+++..+. -....-+-...|.+..++..+++.|..-.+.
T Consensus 388 Qe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 388 QEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 11111122 12223333333321 1122233345567788999999999887764
No 91
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=2e-10 Score=75.21 Aligned_cols=49 Identities=47% Similarity=0.855 Sum_probs=24.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 226 PAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 226 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444455555555555555555555555555455555555555544443
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.10 E-value=8.6e-06 Score=77.90 Aligned_cols=416 Identities=13% Similarity=0.112 Sum_probs=230.9
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 67 THMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLT-LNILINCFGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
++.+|. |+.+|+.|++-+..+ .+++++.+++++... .|.... |..-| .......+++..+++|.+.+.
T Consensus 13 ie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi-------~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 13 IEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYI-------ERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHH-------HHHHHhhhHHHHHHHHHHHHH
Confidence 344454 888888888766555 888888888888744 454432 33332 455667788888888888776
Q ss_pred CCCCCCHhHHHHHHHHHHh-cCChHH----HHHHHHHHHhC-CCCCCccccccHHHHHHHHHH---------HHhcCCcc
Q 040279 146 FGVRPDVITYGTLINGFCR-TGNLSV----ALRLHKKMVSG-DYENGLISKTNIFSYSIIIDS---------LCKEGLVD 210 (626)
Q Consensus 146 ~~~~~~~~~~~~li~~~~~-~g~~~~----A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---------~~~~g~~~ 210 (626)
. ..+...|...+.---+ .|+... -.+.|+-.... +.+ ..+...|+..+.. +..+.+++
T Consensus 82 k--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~d-----i~s~siW~eYi~FL~~vea~gk~ee~QRI~ 154 (656)
T KOG1914|consen 82 K--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMD-----IKSYSIWDEYINFLEGVEAVGKYEENQRIT 154 (656)
T ss_pred H--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccC-----cccchhHHHHHHHHHcccccccHHHHHHHH
Confidence 5 3455666655543332 222222 23334433332 211 2223344444433 33345677
Q ss_pred hHHHHHHHHhhCCCCCCcchHH------HHHHHH-------HhcCCHHHHHHHHHHHHH--CCCCCChhh----------
Q 040279 211 KAKELFLEMKGRGINPAVVVCT------TLIHGF-------CCAGNWEEVNGLFIEMLD--LGPRPNLLT---------- 265 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~------~li~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------- 265 (626)
..+++++++...-+.-=...|+ .=|+.. -+...+..|.++++++.. .|......+
T Consensus 155 ~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 155 AVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 7888888887641110011222 112211 133456778888877753 222111111
Q ss_pred -----HHHHHHHHHhcC------CH--HHHHHHHHHHH-hcCCCCCHhhHH-----HHHHHHHhcCC-------hHHHHH
Q 040279 266 -----FNVMIDCLCKGG------KI--NEANGLLELMI-QRGLNPDRFTYN-----SLMDGYCLVGR-------IDTARE 319 (626)
Q Consensus 266 -----~~~l~~~~~~~~------~~--~~a~~~~~~~~-~~~~~~~~~~~~-----~ll~~~~~~g~-------~~~a~~ 319 (626)
|..+|.---..+ .. ....-++++.. -.+..|+..... ..-+.+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 222222111110 00 01111122211 112333321110 11122333333 345555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040279 320 IFLSMHSKGCKHTVVSYNILINGYCKI---LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL 396 (626)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (626)
++++..+.-...+..+|..+...--.. ...+....+++++.......-..+|..++..-.+..-...|..+|.++.+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 555554432222333333333221111 23566677777776553333445677778888888888889999999888
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--H
Q 040279 397 YNVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--V 473 (626)
Q Consensus 397 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 473 (626)
.+..+ ++.++.+++..++ .++.+-|.++|+-=.+. +..++......++.+...++-..+..+|++....++.|+ .
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~ 472 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK 472 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH
Confidence 76666 6667777877666 47888888888754433 244556667777888888888889999999888766655 5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
..|..++.--..-|+...+.++-+++...
T Consensus 473 ~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 473 EIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 68888888888889988888888777653
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.09 E-value=3.6e-10 Score=73.96 Aligned_cols=49 Identities=41% Similarity=0.783 Sum_probs=34.1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777766664
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=1.1e-06 Score=86.59 Aligned_cols=201 Identities=14% Similarity=0.044 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV---CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTF 266 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 266 (626)
|.....|..+...+...|+.+.+.+.+....+.. +++... .......+...|++++|.+.+++..+..+. +...+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHH
Confidence 3445667777777777888888777777665542 222221 222334556788888998888888776332 33333
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040279 267 NVMIDCLCK----GGKINEANGLLELMIQRGLNPD-RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILIN 341 (626)
Q Consensus 267 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (626)
.. ...+.. .+....+.+.++.. ....|+ ......+...+...|++++|...+++..+... .+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 32 222222 34444454444431 111222 23334455667778888888888888887642 24556677777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040279 342 GYCKILNVEEAMSLYRQIISNGVR-QTV--ITYNTLLSGLFQAGQAGYAQKLFDEMKL 396 (626)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (626)
++...|++++|+..+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 788888888888888887764221 222 2344566777788888888888887753
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=3e-06 Score=76.15 Aligned_cols=315 Identities=12% Similarity=0.002 Sum_probs=168.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
++.-..-+.+.+...|++..|+..|..+++.+ |.+-.++..-...|...|+-..|+.=+++..+. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 44455668888888999999999999998765 444445555566788889888888888888775 555321
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 231 -CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL--LTF------------NVMIDCLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 231 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
-..-...+.++|+++.|..-|+..++..+.... ..+ ...+..+...|+...|+.....+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 122335667899999999999988876432111 011 111222333444444554444444432 2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 040279 296 PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLL 375 (626)
Q Consensus 296 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 375 (626)
-|...+..-..+|...|++..|+.-++...+.... +...+..+-..+...|+.+.++...++.++. .||...+-.
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~-- 261 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP-- 261 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH--
Confidence 24444444444555555555554444444333211 3333444444444445555544444444442 222211110
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHHcC
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF---GIEIFNCLIDGLCKAG 452 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 452 (626)
.|- ...+..+.++.|. .....+++.+++.-.+...+..... ....+..+-.++...|
T Consensus 262 -~YK---klkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 262 -FYK---KLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred -HHH---HHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 011 1111111122111 1123445555555555555443221 1223344445556667
Q ss_pred CHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 453 RLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
++.+|++.-.++++. .|| ..++.--..+|.-..+++.|+.-|+...+.
T Consensus 322 ~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 777777777776663 333 666666666777667777777777777764
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=9e-09 Score=95.48 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=85.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cC
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK----AG 452 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 452 (626)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. +..+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCch
Confidence 444556666666665432 244555566666677777777777777766542 22333334443332 23
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT-SKVVELL 531 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 531 (626)
++.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+..+.+ +-++.++..++-+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 467777777776654 44566677777777777777777777777766543 33455666666666666666 5566666
Q ss_pred HHhhc
Q 040279 532 HKMAE 536 (626)
Q Consensus 532 ~~~~~ 536 (626)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66665
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=1.4e-06 Score=78.13 Aligned_cols=319 Identities=12% Similarity=0.090 Sum_probs=196.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDV 152 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (626)
.++.-..-+...+...|++..|+.-|..+++ .|+..|.++.+ .+..|...|+-..|+.-+.++++. +||-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifr----RaT~yLAmGksk~al~Dl~rVlel--KpDF 105 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFR----RATVYLAMGKSKAALQDLSRVLEL--KPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHH----HHHHHhhhcCCccchhhHHHHHhc--CccH
Confidence 3555566688888899999999999998884 45566666654 346788889999999999999886 7775
Q ss_pred hH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 153 IT-YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 153 ~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
.. ...-...+.+.|.+++|..=|+.+++.+...+. ....+..+ --.++-.. .
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl-------~~~~e~~~----------------l 158 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKL-------ALIQEHWV----------------L 158 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHH-------HhHHHHHH----------------H
Confidence 43 344567888999999999999999987622111 11111111 00011111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 311 (626)
...+..+...|+...|++....+++.. +.|...+..-..+|...|++..|+.=++...+..-. +..++--+-..+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhh
Confidence 112223344555666666666655542 224555555555566666666665555555444222 333333444555555
Q ss_pred CChHHHHHHHHHHHhcCCCCChhh----HHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCChhhH---HHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVS----YNIL---------INGYCKILNVEEAMSLYRQIISNGVRQTVITY---NTLL 375 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~ 375 (626)
|+.+.++..+++.++.+ ||... |..+ +......++|.++++..+...+.........+ ..+-
T Consensus 237 gd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 66666655555555542 23211 1110 22345677888888888888776433223333 3444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK 433 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (626)
..+...+++.+|+..-.+++... +.|..++.--..+|.-...++.|+.-|+...+.+
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 56667788888988888887642 3347788888888888888999999998888765
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.02 E-value=1.9e-06 Score=84.99 Aligned_cols=353 Identities=16% Similarity=0.146 Sum_probs=200.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
.+.+.....++.+|+.+++.+.... ....-|..+.+.|...|+++.|.++|-+. ..++-.|..
T Consensus 738 aieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~m 800 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDM 800 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHH
Confidence 3455556777888888888776543 22345667778888888888888887653 245667788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTA 317 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 317 (626)
|.+.|+|++|.++-.+.. |+......|..-..-.-+.|++.+|.+++-.+. .|+ ..|.+|-+.|..+..
T Consensus 801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDM 869 (1636)
T ss_pred HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHH
Confidence 888888888888776653 345456666666666777888888887764432 233 246778888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH--
Q 040279 318 REIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMK-- 395 (626)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 395 (626)
+++..+-... .-..+...+..-+-..|+...|...|-+..+ |...+.+|...+-|++|.++-+.--
T Consensus 870 irlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 870 IRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGA 937 (1636)
T ss_pred HHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccc
Confidence 7776654322 2334556667777778888888777655432 4455566666666666655433211
Q ss_pred ------------hCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 040279 396 ------------LYNVEPDLS------TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457 (626)
Q Consensus 396 ------------~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (626)
..|-..-+. ....-++.-+..+.++-|..+-+-..+.. ...+...+...+...|+++.|
T Consensus 938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~eda 1014 (1636)
T KOG3616|consen 938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDA 1014 (1636)
T ss_pred cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhh
Confidence 000000000 01111222233444444444443333222 112233344456678899998
Q ss_pred HHHHHhcccCCCCCCHhHHHH-------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 040279 458 WELFHKLPQKGLVPTVVTYSI-------------------MIHGLCRKGKLEKANDFLLYMEKNGCAPN--VVTFNTLMH 516 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 516 (626)
-+.+-+..+.+ .-..||.. .+..+.+..+|..|.++-+.- .|+ ...+..-.+
T Consensus 1015 skhyveaikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar 1087 (1636)
T KOG3616|consen 1015 SKHYVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQAR 1087 (1636)
T ss_pred hHhhHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhh
Confidence 88777766531 11122211 122233334444444332221 222 234555555
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.....|++.+|..++-++.+ |+.. ++.|..++.|.+|.++.+.+
T Consensus 1088 ~aiee~d~~kae~fllrank------p~i~-----l~yf~e~~lw~dalri~kdy 1131 (1636)
T KOG3616|consen 1088 GAIEEGDFLKAEGFLLRANK------PDIA-----LNYFIEAELWPDALRIAKDY 1131 (1636)
T ss_pred ccccccchhhhhhheeecCC------CchH-----HHHHHHhccChHHHHHHHhh
Confidence 66677888888777766654 5432 34455566666666665543
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.6e-05 Score=78.34 Aligned_cols=245 Identities=15% Similarity=0.096 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CCCCHhhHHHHHHhhhhh
Q 040279 53 IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSI-G--------LLPDFLTLNILINCFGNK 123 (626)
Q Consensus 53 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--------~~p~~~~~~~ll~~~~~l 123 (626)
.|+.+.|.+..+.+ .+..+|..++..+.+..+.+-|.-.+-.|... | -.|+.......
T Consensus 741 iG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvA------- 807 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVA------- 807 (1416)
T ss_pred eccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHH-------
Confidence 36899998888876 35678999999999888887776555544311 0 02221111111
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
......|.+++|..+|++..+. ..|=..|-..|.+++|.++-+.--+.. . ..+|......+
T Consensus 808 -vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH--------L-r~Tyy~yA~~L 868 (1416)
T KOG3617|consen 808 -VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH--------L-RNTYYNYAKYL 868 (1416)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee--------h-hhhHHHHHHHH
Confidence 1123456677777777766542 334445556677777776665432211 1 23455555555
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
-..++.+.|++.|++.... -..++..|. .++.......+.+ .|...|.-.....-..|+.+.|+
T Consensus 869 ear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHH
Confidence 5666666666666654321 111111111 1111111111111 13334444444455566666666
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
.+|..... |-.+++..+-.|+.++|-++-++- | |......+.+.|-..|++.+|...|-++.
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66665543 234445555566666666554432 1 44555566666666667666666665544
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=7.6e-06 Score=91.47 Aligned_cols=336 Identities=12% Similarity=0.007 Sum_probs=210.6
Q ss_pred HHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--hhhHHHHHHH
Q 040279 201 DSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP------RPN--LLTFNVMIDC 272 (626)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 272 (626)
......|+++.+..+++.+.......+..........+...|+++++..++......-. .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653221112333334455566788999999999887754311 111 1122233455
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---C--ChhhHHHHHHHH
Q 040279 273 LCKGGKINEANGLLELMIQRGLNPDR----FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCK---H--TVVSYNILINGY 343 (626)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~ 343 (626)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+++....... + ...+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66889999999999988764111121 23345556677899999999998887653111 1 123445566677
Q ss_pred HhcCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHH
Q 040279 344 CKILNVEEAMSLYRQIISN----GVR--Q-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLY--NVEP--DLSTYNILIDG 412 (626)
Q Consensus 344 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~ 412 (626)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886642 211 1 1223445556677789999999998887542 1112 12344445567
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCcCHH--HH--HHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNK--FEFGIE--IF--NCLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMIHGL 483 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 483 (626)
+...|+.+.|...++...... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999988765321 111111 00 1122444568899999999877665211111 11244667788
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 484 CRKGKLEKANDFLLYMEKN----GCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999988653 32222 23566677788899999999999999987
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=7.7e-05 Score=76.78 Aligned_cols=202 Identities=12% Similarity=0.108 Sum_probs=96.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSG 377 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (626)
+.+|..+..+..+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+.+....+..-.|... +.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345555555555555555555443221 144555566666666666666666555555443333322 345555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 040279 378 LFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457 (626)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (626)
|++.++..+..+.+ .-|+......+.+-|...|.++.|.-+|..+ ..|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66655555433322 1345555555555555555555555555422 2344455555555555555
Q ss_pred HHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 458 WELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
...-+++. +..+|..+-.+|...+.+.-| +|--.++-....-+..++.-|...|-+++.+.+++..
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 54443332 344444444444443332221 1111112222333444555555555555555555544
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4.4e-08 Score=93.96 Aligned_cols=250 Identities=12% Similarity=0.048 Sum_probs=141.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
+.|++.+|.-.|+...... +.+...|..|.......++-..|+..+.+..+.+ +.+......|.-.|...|.-.+|.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444444444444444431 2233444444444444444444555554444432 2233344444444444444445555
Q ss_pred HHHHHHHCCCCcCHHHHHH----H---HHHHHHcCCHHHHHHHHHhcc-cCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040279 425 LFHMLEMNKFEFGIEIFNC----L---IDGLCKAGRLDNAWELFHKLP-QKGLVPTVVTYSIMIHGLCRKGKLEKANDFL 496 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~----l---~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (626)
.++..+...++ -...... . -..+.....+....++|-++. ..+..+|+.+...|...|--.|++++|...|
T Consensus 375 ~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 375 MLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 54443322110 0000000 0 000011111223333333333 3444467888888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhhc
Q 040279 497 LYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 497 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 575 (626)
+.++... +-|..+|+.|+..+....+.++|+..|.++++ +.|. ..+...|+-.|...|.++||.+.|-+++...
T Consensus 454 ~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 454 EAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9998853 44667889999888888889999999999988 8887 4677788888999999999999888775432
Q ss_pred cccc--cccC----CchhhhhhhheeccCCccch
Q 040279 576 LYVT--IFQP----SSLGSMIGCTVRLMPQPEMS 603 (626)
Q Consensus 576 ~~~~--~~~p----~~~~~l~~~~~~~~~~~~~~ 603 (626)
.-.. ...| .+|..|... +..++..+..
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~a-ls~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLA-LSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHH-HHHcCCchHH
Confidence 2211 1111 347777633 4556666633
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=4.1e-06 Score=93.60 Aligned_cols=338 Identities=11% Similarity=-0.008 Sum_probs=213.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC------CCC--cchH
Q 040279 160 NGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI------NPA--VVVC 231 (626)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~ 231 (626)
......|+++.+...++.+.... ...++.........+...|++++|...+......-- .+. ....
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~ 455 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEV------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFN 455 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHH------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHH
Confidence 34445677777777776652111 111222334445556678999999999987754310 111 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC--CHhhHH
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL----LTFNVMIDCLCKGGKINEANGLLELMIQRGL---NP--DRFTYN 302 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~ 302 (626)
..+...+...|++++|...+++........+. ...+.+...+...|++++|...+++.....- .+ ...++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 23344566899999999999998764222221 2345566677889999999999988765311 11 123445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--ChhhH
Q 040279 303 SLMDGYCLVGRIDTAREIFLSMHSK----GCK--H-TVVSYNILINGYCKILNVEEAMSLYRQIISNG--VRQ--TVITY 371 (626)
Q Consensus 303 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~ 371 (626)
.+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+ ....+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 5667788899999999998886653 211 1 12234455566777899999999998876531 111 22334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHH
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYN--VEPDLS--T-Y-NILIDGLCKNNCVQEAVKLFHMLEMNKFEFG---IEIFN 442 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 442 (626)
..+...+...|+++.|...+....... ...... . . ...+..+...|+.+.|..++........... ...+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 445667788999999999998875421 111111 0 0 1122344568999999999876553221111 11234
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQK----GLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNG 503 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (626)
.+..++...|++++|...+++.... |..++ ..++..+..++...|+.++|.+.+.+..+..
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5677788999999999999987652 22222 3456677788999999999999999998864
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=4.5e-08 Score=90.87 Aligned_cols=247 Identities=14% Similarity=0.057 Sum_probs=153.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 040279 307 GYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (626)
-+.-.|.+..++.-.+ ......+.+......+.+++...|+++.++ .++... ..|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3444566666665444 222211112334445566777777766544 233222 24455444444443333344445
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 040279 387 AQKLFDEMKLYNVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLP 465 (626)
Q Consensus 387 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (626)
+..-++........+ +..........+...|++++|+++++.. .+.+.....+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554444443332222 2222223334566789999999988542 367777888999999999999999999998
Q ss_pred cCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 040279 466 QKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL 541 (626)
Q Consensus 466 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (626)
+. ..| .+...++.++.. ...+.+|..+|+++.+. ..++..+++.+..++...|++++|.++++++.. .
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~----~ 230 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE----K 230 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC----C
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----h
Confidence 74 334 334444444432 23689999999998775 578889999999999999999999999999987 5
Q ss_pred CC-CHHHHHHHHHHHHccCCH-hHHHHHHHHHH
Q 040279 542 VP-DDTTFSIVVDLLAKDEKY-HECSAVSKSSY 572 (626)
Q Consensus 542 ~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 572 (626)
.| ++.++..++-+....|+. +.+.++++++.
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 56 567888888888888888 66777888765
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.93 E-value=5.8e-05 Score=72.43 Aligned_cols=410 Identities=11% Similarity=0.078 Sum_probs=240.4
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCc
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (626)
+-|..+|+.||+-+... .++++.+.++++... .+.....|..-+....+.++++..+++|.+.... ..+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnl 86 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNL 86 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhH
Confidence 55788888888877666 888889999888765 3666778888888888888999999999887766 3356
Q ss_pred chHHHHHHHHHh-cCCHHH----HHHHHHHHH-HCCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHhc
Q 040279 229 VVCTTLIHGFCC-AGNWEE----VNGLFIEML-DLGPRP-NLLTFNVMIDC---------LCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 229 ~~~~~li~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~ 292 (626)
..|..-+.--.+ .|+... ..+.|+-.+ +.|..+ +...|+..+.. +..+.+++...++++++...
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 677766653322 222222 222333322 223222 22234444432 23334566677777777654
Q ss_pred CCCCCHhhH------HHHHHH-------HHhcCChHHHHHHHHHHHhc--CCCCChhh---------------HHHHHHH
Q 040279 293 GLNPDRFTY------NSLMDG-------YCLVGRIDTAREIFLSMHSK--GCKHTVVS---------------YNILING 342 (626)
Q Consensus 293 ~~~~~~~~~------~~ll~~-------~~~~g~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l~~~ 342 (626)
.+..=...| ..-++. --+...+..|.++++++... |......+ |..+|..
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 221111111 111111 11233466677777776542 33222222 3333332
Q ss_pred HHhcCC--------hHHHHHHHHHHHH-CCCCCChhh-HH----HHHHHHHHcCC-------HHHHHHHHHHHHhCCCCC
Q 040279 343 YCKILN--------VEEAMSLYRQIIS-NGVRQTVIT-YN----TLLSGLFQAGQ-------AGYAQKLFDEMKLYNVEP 401 (626)
Q Consensus 343 ~~~~~~--------~~~A~~~~~~~~~-~~~~~~~~~-~~----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~ 401 (626)
-..++- -....-.+++... .+..|+... +. .....+...|+ .+++..+++.....-..-
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 211110 1112222333222 122222211 00 11112333333 345556666554432223
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-CHhHHH
Q 040279 402 DLSTYNILIDGLC---KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP-TVVTYS 477 (626)
Q Consensus 402 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 477 (626)
+...|..+.+.-- ..+..+....+++++.......-.-+|..++..-.+..-+..|..+|.++.+.+..+ ++...+
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3334443332211 112355666666666644333334567888888888888999999999998876666 567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLL 555 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 555 (626)
+++.-|+ .++.+-|.++|+--.++ ...++.--...+.-+...++-..+..+|++.+. .++.|+ ...|..++..-
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~--s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT--SVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh--ccCChhhhHHHHHHHHHHH
Confidence 8887766 47889999999987765 233444456677778888999999999999998 566765 57899999999
Q ss_pred HccCCHhHHHHHHHHHH
Q 040279 556 AKDEKYHECSAVSKSSY 572 (626)
Q Consensus 556 ~~~g~~~~A~~~~~~~~ 572 (626)
..-|++..+.++-++..
T Consensus 483 S~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 99999999999988865
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00014 Score=74.94 Aligned_cols=204 Identities=12% Similarity=0.105 Sum_probs=147.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
.+..|+.+..+-.+.+...+|++-|-+. .|+..|..++....+.|.+++..+.+....+..-.|.. -+.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 4567888888888888888887766443 26677888888888888888888888877766545543 356788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+|++.+++.+-...+. -|+......+.+-|...|.++.|.-+|... ..|..|...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 8888888777665542 467777777888888888888888777643 447778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
|...-+++ .+..+|..+-.+|...+.+.-|. |-- ..+-...+-+..++..|...|-++|-..+++..
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG--L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG--LNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC--ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 87755443 25678888888888776654432 211 223335667788888888888888888888775
Q ss_pred H
Q 040279 572 Y 572 (626)
Q Consensus 572 ~ 572 (626)
+
T Consensus 1306 L 1306 (1666)
T KOG0985|consen 1306 L 1306 (1666)
T ss_pred h
Confidence 3
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.6e-07 Score=90.27 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=184.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 040279 307 GYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (626)
-+.+.|++.+|.-.|+...+.++. +...|..|......+++-..|+..+++..+.. +.+......|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356788899999999988887533 77889999999999999999999999998873 3366777788888888888889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHHcCCH
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILI-----------DGLCKNNCVQEAVKLFHMLE-MNKFEFGIEIFNCLIDGLCKAGRL 454 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 454 (626)
|.+.++..+... |. |..+. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 999988886542 11 00000 01111122334444554443 444457888899999899999999
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVV-TFNTLMHGFLQNNKTSKVVELLHK 533 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 533 (626)
++|...|+.++... +-|..+||.|...++...+.++|+..|.++++ +.|+.+ +...|.-.|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999853 33578999999999999999999999999999 578854 667788889999999999999888
Q ss_pred hhcCCCC-------CCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 040279 534 MAEPERN-------LVPDDTTFSIVVDLLAKDEKYHECSAVS 568 (626)
Q Consensus 534 ~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 568 (626)
++....+ -.++...|..|-.++...++.|-+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 7651111 1123456777776777777766554443
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=4.8e-06 Score=88.19 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 336 YNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
|.++++.-...|.-+...++|+++.+- ......|..|...|.+.++.++|.++++.|.+. .......|...+..+.+
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhc
Confidence 333333333344444444444444432 111233444444444444444444444444432 11233344444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFE-FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKAND 494 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 494 (626)
.++-+.|..++.+..+.-+. .......-.++.-.+.|+.+.+..+|+..+.. .+.....|+.++..-.++|+.+.+..
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHH
Confidence 44444444444444332111 12223333333444455555555555554443 12234445555555555555555555
Q ss_pred HHHHHHHCCCCCC
Q 040279 495 FLLYMEKNGCAPN 507 (626)
Q Consensus 495 ~~~~~~~~~~~p~ 507 (626)
+|+++...++.|-
T Consensus 1656 lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1656 LFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHhcCCChh
Confidence 5555555444443
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=3.1e-06 Score=83.82 Aligned_cols=215 Identities=15% Similarity=0.058 Sum_probs=175.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 300 TYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF 379 (626)
Q Consensus 300 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (626)
.-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..+. +|++..|..+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456778888999999999998765 3556788899999999999999988873 678888988888887
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 040279 380 QAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWE 459 (626)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (626)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888776432 11112222234689999999998776655 5677889889899999999999999
Q ss_pred HHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 460 LFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 460 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|...... .|| ...||.+..+|.+.|+-.+|...+.+..+.+ .-+...|...+....+-|.+++|++.+.++.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99998874 444 7789999999999999999999999999987 66777888888889999999999999999876
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=0.00035 Score=70.64 Aligned_cols=264 Identities=16% Similarity=0.135 Sum_probs=161.2
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
++-..........| -+++|..+|.+..+ |..|-..|...|.|++|.++-+.--.-.+...-..|.
T Consensus 801 e~eakvAvLAieLg--MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA---- 865 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELG--MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA---- 865 (1416)
T ss_pred chhhHHHHHHHHHh--hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH----
Confidence 33334444444544 78999999988733 5556667788899999988877544332222222222
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHH----------HHCC---------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNM----------IAFG---------VRPDVITYGTLINGFCRTGNLSVALRLHKKMV 179 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 179 (626)
.-+...++.+.|++.|++. +... -..|...|.-...-+-..|+.+.|+.+|..+.
T Consensus 866 ------~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 866 ------KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred ------HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 2233456777787777653 2111 01244455556666667888888888888753
Q ss_pred hCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 180 SGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP 259 (626)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 259 (626)
.|.++++..+-+|+.++|-++-++-. |......|.+.|-..|++.+|...|.+...
T Consensus 940 ---------------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--- 995 (1416)
T KOG3617|consen 940 ---------------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA--- 995 (1416)
T ss_pred ---------------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---
Confidence 36678888888999999988876643 555667788889999999999998877642
Q ss_pred CCChhhHHHHHHHHH---------------hcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH-
Q 040279 260 RPNLLTFNVMIDCLC---------------KGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLS- 323 (626)
Q Consensus 260 ~~~~~~~~~l~~~~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~- 323 (626)
|...|+.|- ...+.-.|-++|++. |.. +...+..|-+.|.+.+|+++--+
T Consensus 996 ------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 996 ------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred ------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence 333333321 122233333444332 111 22334556677777777665211
Q ss_pred -------HHhc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 324 -------MHSK--GCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 324 -------~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
+... ....|+...+.-...++...++++|..++-...+
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1222 2234666677777788888888888887765543
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=5.3e-06 Score=87.86 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=140.0
Q ss_pred hhhcCCHHHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 127 LCVENRIKEATWLFKNMIAFGVRP-----DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 127 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
....++.++|++++++.+.. +.+ -...|.++++.....|.-+...++|+++.+.- .....|..|..
T Consensus 1468 ~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------d~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------DAYTVHLKLLG 1538 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--------chHHHHHHHHH
Confidence 44556677777777766654 211 12356666666666777777777777776632 33456777777
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP-NLLTFNVMIDCLCKGGKIN 280 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 280 (626)
.|.+.+.+++|.++++.|.++ ......+|...+..+.++++-+.|..++.+.++.-+.. ........+..-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 777777777777777777765 23456677777777777777777777777776642221 1223344455556777777
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHH
Q 040279 281 EANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHT--VVSYNILINGYCKILNVEEAMSLY 356 (626)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 356 (626)
.+..+|+..+... +.....|+..+++-.+.|+.+.+..+|+++...++.+- -..|...+..--+.|+-..+..+=
T Consensus 1618 RGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 7777777777652 33556777777777777777777788877777765433 234555555555556655444433
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=3.4e-07 Score=75.78 Aligned_cols=89 Identities=6% Similarity=-0.090 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLA 556 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 556 (626)
.+..++...|++++|...|+...... +.+...|..+..++...|++++|...|+++.. +.| +...+..++.++.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~----l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM----LDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHH
Confidence 33444444555555555555554432 33344444444455555555555555555544 334 3344445555555
Q ss_pred ccCCHhHHHHHHHHH
Q 040279 557 KDEKYHECSAVSKSS 571 (626)
Q Consensus 557 ~~g~~~~A~~~~~~~ 571 (626)
..|++++|.+.++++
T Consensus 104 ~~g~~~eAi~~~~~A 118 (144)
T PRK15359 104 MMGEPGLAREAFQTA 118 (144)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555544
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.7e-06 Score=79.30 Aligned_cols=191 Identities=15% Similarity=0.061 Sum_probs=120.5
Q ss_pred CCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 040279 34 VSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL 111 (626)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 111 (626)
.+.....+......+...| ++++|...|++++...|.. ...++..++..+.+.|++++|+..++++.+. .|+..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSG--DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCC
Confidence 3444555666666666666 9999999999998876642 1247788999999999999999999999876 45433
Q ss_pred hHHHHHHhhhhhhhhhhh--------cCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 112 TLNILINCFGNKERGLCV--------ENRIKEATWLFKNMIAFGVRPD-VITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 112 ~~~~ll~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.....+-. ++..+.. .|++++|.+.|+++... .|+ ...+..+..... . ....
T Consensus 105 ~~~~a~~~---~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~---- 165 (235)
T TIGR03302 105 DADYAYYL---RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL---- 165 (235)
T ss_pred chHHHHHH---HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH----
Confidence 32111100 1223333 37899999999999876 333 223322211110 0 0000
Q ss_pred CCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 183 YENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI--NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
......+...+.+.|++++|...++....... +.....+..+..++.+.|++++|...++.+...
T Consensus 166 ----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ----------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01112455567777888888888887776521 122456777778888888888888877776554
No 114
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=1.8e-05 Score=74.67 Aligned_cols=203 Identities=10% Similarity=0.018 Sum_probs=122.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 040279 346 ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG-QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCV--QEA 422 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A 422 (626)
.+..++|+.+..++++.. +.+...|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|.. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 456666666666666642 223344544444455555 4567777777666543 33444455444444444442 556
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc---CC----HHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK---GK----LEKANDF 495 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 495 (626)
+.+++.+.+.. +-+..+|+....++...|+++++++.++++++.+.. |...|+....++.+. |. .++.+++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66676666554 456677777777777777777777777777775433 566666655555443 22 2456777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHc
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQN----NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAK 557 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 557 (626)
..+++... +-|...|+.+...+... ++..+|.+++.+..+ ..| +...+..|++.|..
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~----~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS----KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc----ccCCcHHHHHHHHHHHHh
Confidence 76777653 55667787777777663 344567777777765 445 45667777777765
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=3.9e-06 Score=73.11 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=117.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+...|+-+.+..+....... .+-|......++....+.|++..|+..|++..... |+|..+|+.+.-+|.
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d~~~~~~lgaald 145 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCChhhhhHHHHHHH
Confidence 4556667777777776665433 23455666678888888888888888888888776 788888888888888
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 284 (626)
+.|+++.|..-|.+..+.- +-+....+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 8888888888888887763 335677788888888888888888888888766433 66666777777788888888888
Q ss_pred HHHHHH
Q 040279 285 LLELMI 290 (626)
Q Consensus 285 ~~~~~~ 290 (626)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 766544
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=2.9e-06 Score=77.83 Aligned_cols=184 Identities=10% Similarity=-0.023 Sum_probs=112.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL---STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI--EIF 441 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 441 (626)
....+..+...+...|+++.|...++++.... +.+. ..+..+..++...|++++|...++.+.+....... ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44556666667777778888877777776542 1121 34556667777777777777777777654321111 134
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 442 NCLIDGLCKA--------GRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 442 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
..+..++... |++++|.+.++++.+. .|+. ..+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444455443 5666777777776654 2332 22222111100 000 000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+...+.+.|++++|...++++++. ..-.| ....+..++.++.+.|++++|.++++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566788999999999999999871 11123 35788899999999999999999998874
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.5e-06 Score=84.47 Aligned_cols=216 Identities=13% Similarity=0.060 Sum_probs=152.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
.-..+...+...|-...|+.+|++.. .|...+.+|...|+..+|..+..+..++ +|+...|..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34556677778888888888888743 4566777888888888888888777764 677888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGR 313 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 313 (626)
+.+......-+++|.++.+..... +-..+.......++++++.+.|+...+.+ +.-..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 877776666677888777665332 11222222334678888888888776653 3345566666777777888
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 040279 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDE 393 (626)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 393 (626)
++.|.+.|.......+ -+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+......|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 8888888887776532 255678888888888888888888888887775 34556666667777777888888887777
Q ss_pred HHh
Q 040279 394 MKL 396 (626)
Q Consensus 394 ~~~ 396 (626)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 654
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=6.4e-06 Score=71.77 Aligned_cols=158 Identities=10% Similarity=0.075 Sum_probs=116.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...+.+.... -++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 444555666677777777766654332 456666666777788888888888888888775 356788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 487 GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
|+.++|..-|.+..+.. +-++...+.+.-.+.-.|+.+.|..++..... ..+ |..+-..+..+....|++++|+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l----~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL----SPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888888752 33556777888888888888888888888876 344 6667777888888888888888
Q ss_pred HHHHHH
Q 040279 566 AVSKSS 571 (626)
Q Consensus 566 ~~~~~~ 571 (626)
.+...-
T Consensus 223 ~i~~~e 228 (257)
T COG5010 223 DIAVQE 228 (257)
T ss_pred hhcccc
Confidence 877653
No 119
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=3.4e-05 Score=72.85 Aligned_cols=205 Identities=11% Similarity=0.032 Sum_probs=114.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC-CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhc
Q 040279 163 CRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG-LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCA 241 (626)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (626)
...++.++|+.+.++++..+ |.+..+|+....++...| +++++++.++++.+.. +.+..+|+.....+.+.
T Consensus 48 ~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 34456667777777777665 455556665555555665 4577777777776653 22445566554444455
Q ss_pred CCH--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc---CC---
Q 040279 242 GNW--EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV---GR--- 313 (626)
Q Consensus 242 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~--- 313 (626)
|+. ++++++++++++..++ +..+|+...-++...|++++++..++++++.++. +...|+.......+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 542 5566777777665444 6667776666666777777777777777766533 444555444433332 11
Q ss_pred -hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 314 -IDTAREIFLSMHSKGCKHTVVSYNILINGYCKI----LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF 379 (626)
Q Consensus 314 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (626)
.+........+.... +-+...|+.+...+... ++..+|.+.+.+..+.+ +.+......|+..|.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 234555554555443 22555666666655552 23344666665555432 224444555555554
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.4e-05 Score=68.16 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=110.6
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 355 LYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKF 434 (626)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 434 (626)
+.+.+.......+......-...|...+++++|.+...... +......=+..+.+..+.+-|.+.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444443233232333333456777788888887776622 23333444555667777888888888887543
Q ss_pred CcCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040279 435 EFGIEIFNCLIDGLCK----AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVT 510 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (626)
+..+.+.|..++.+ .+++..|.-+|++|.++ ..|+..+.+-.+.++...|++++|..++++...+. ..++.+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 55666666666654 34677888888888775 56788888888888888888888888888888764 446667
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSK-VVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~-a~~~~~~~~~ 536 (626)
+..++-+-...|+..+ ..+.+.+...
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7666666556665533 4455666554
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.8e-05 Score=68.38 Aligned_cols=136 Identities=15% Similarity=0.055 Sum_probs=59.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+....|+.+.|...++.+...- |-+..+...-...+...|++++|+++++.+++.+ +.|..++-.-+......|+.-+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 3334445555555555444332 2222222222222334455555555555554432 2233333333333344444445
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDL 554 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 554 (626)
|++-+....+. +..|...|..+...|...|++++|.-.+++++- +.| ++..+..+++.
T Consensus 139 aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll----~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 139 AIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL----IQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH----cCCCcHHHHHHHHHH
Confidence 55444444443 344555555555555555555555555555544 444 33334444444
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.00099 Score=68.34 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAV--AKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
++..|.+..+.+++..|. ..|..++.++ .|.|..++|..+++.....+.. |..|...+- ..|...+.
T Consensus 24 qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~-------~~y~d~~~ 92 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQ-------NVYRDLGK 92 (932)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHH-------HHHHHHhh
Confidence 577777777776665443 2233444443 4677777777666665544333 444444443 34556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC-Cc--
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG-LV-- 209 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-- 209 (626)
.++|..+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .|.++..+-++++.+.+.- ..
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCcc
Confidence 77777777776655 455666666666666666555433222222221 2333444444444443321 11
Q ss_pred -------chHHHHHHHHhhCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 040279 210 -------DKAKELFLEMKGRGINP-AVVVCTTLIHGFCCAGNWEEVNGLFI-EMLDLGPRPNLLTFNVMIDCLCKGGKIN 280 (626)
Q Consensus 210 -------~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 280 (626)
.-|.+.++.+.+.+-+. +..-...-...+...|++++|++++. ...+.-..-+...-+.-+..+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 12344444444432010 11111112223335566666666662 2222222223333344455566666666
Q ss_pred HHHHHHHHHHhcC
Q 040279 281 EANGLLELMIQRG 293 (626)
Q Consensus 281 ~a~~~~~~~~~~~ 293 (626)
+..++-.++...|
T Consensus 244 ~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 244 ELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666654
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=2.4e-05 Score=82.42 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=88.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
+..++..+..+|-+.|+.++|..+++++++.+ +.|+.+.+.+...|... ++++|++++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 34566677777777777777777777777766 56677777777777777 777777777766653
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHH
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR-GLNPDRFTYNSLMDGYC 309 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 309 (626)
+...+++..+.+++.++....+. +...+. ++.+.+... |...-..++..+-..|-
T Consensus 179 -------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 179 -------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred -------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 44455666666666666554221 222222 222222221 11222333444555566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040279 310 LVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYC 344 (626)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (626)
..++++++..+++.+.+.... |.....-++.+|.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 666677777777777666432 4444555555554
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.1e-05 Score=70.32 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=147.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 305 MDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 305 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
++-+.-.|.+..++..-....... .+...-..+.++|...|.+...+.- +... -.|.......+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchh
Confidence 344555677777666554444331 2344444455666666665544322 2221 123333333333333333333
Q ss_pred H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 385 G-YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 385 ~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
+ ...++.+.+.......+......-...|...|++++|++...... +.+....=+..+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333444555444333343333444456778888888888776522 333344444566777888888888888
Q ss_pred cccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 464 LPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
|.+- .+..|.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..+++.++..
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-- 236 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-- 236 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 8873 356677767776654 34678888888888875 4788888888888888888888888888888871
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHH-HHHHHH
Q 040279 540 NLVPDDTTFSIVVDLLAKDEKYHECS-AVSKSS 571 (626)
Q Consensus 540 ~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 571 (626)
-.-+++++..++-+-...|+-.++. +.+.+.
T Consensus 237 -d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 237 -DAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred -cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 1225777777777766777665543 344444
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=1.2e-05 Score=70.46 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH-HhcCC
Q 040279 130 ENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL-CKEGL 208 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 208 (626)
.++.++++..++..++.+ +.+...|..+...+...|++++|...|++..+.+ +.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCC
Confidence 445566666666666654 4566777777777777777777777777777765 55666666666653 55565
Q ss_pred --cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 209 --VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 209 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
.++|.+++++..+.+ +-+...+..+...+...|++++|+..|+++++.
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367777777777664 235566666777777777777777777777665
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=7.8e-06 Score=71.69 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=85.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHH-HhcCC--HHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGL-CRKGK--LEKA 492 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 492 (626)
.++.+++...++...... +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455667777776666554 5677788888888888888888888888877753 23566777777653 56566 4788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+++++..+.+ +.+..++..+...+...|++++|+..|+++++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888764 44566777777788888888888888888876
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=2.5e-05 Score=81.45 Aligned_cols=125 Identities=12% Similarity=0.071 Sum_probs=76.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+....+.|++++|+.+++...+.. +.+...+..++.++.+.+++++|+..+++....+ +.+......+..++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~~~~~~~~a~~l 164 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHH
Confidence 345566666666666666666652 2234455566666666666666666666666655 55556666666666
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
.+.|++++|.++|+++...+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666532 223556666666666666666666666666554
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=4.8e-06 Score=68.96 Aligned_cols=107 Identities=9% Similarity=-0.127 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+......+...|++++|...|+.+.... +.+...|..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4456667777888888888888877753 3357777888888888888888888888888764 4566777888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCCH-HHHHHHHH
Q 040279 521 NNKTSKVVELLHKMAEPERNLVPDD-TTFSIVVD 553 (626)
Q Consensus 521 ~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~ 553 (626)
.|++++|+..|+.+++ +.|+. ..+.....
T Consensus 105 ~g~~~eAi~~~~~Al~----~~p~~~~~~~~~~~ 134 (144)
T PRK15359 105 MGEPGLAREAFQTAIK----MSYADASWSEIRQN 134 (144)
T ss_pred cCCHHHHHHHHHHHHH----hCCCChHHHHHHHH
Confidence 8888888888888877 66753 44434333
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=2e-05 Score=82.13 Aligned_cols=144 Identities=14% Similarity=0.055 Sum_probs=121.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 153 (626)
++..+..|+....+.|.+++|..+++.+.+. .|+....-... +..+.+.+++++|+..+++.+... +.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~------a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~ 155 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILM------LRGVKRQQGIEAGRAEIELYFSGG-SSSAR 155 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHhhcC-CCCHH
Confidence 6889999999999999999999999999987 78766555443 467889999999999999999885 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
....+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.- .+...-|+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 78889999999999999999999999854 6778999999999999999999999999998752 233344444
Q ss_pred H
Q 040279 234 L 234 (626)
Q Consensus 234 l 234 (626)
+
T Consensus 228 ~ 228 (694)
T PRK15179 228 R 228 (694)
T ss_pred H
Confidence 3
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=9.1e-05 Score=78.16 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 229 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
..+..+..+|-+.|+.+++..+++++++..+. |+.+.|.+...|+.. ++++|..++.+....
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 35555666666666667777777666666533 566666666666666 666666666665543
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.7e-07 Score=53.95 Aligned_cols=32 Identities=50% Similarity=0.793 Sum_probs=19.5
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 223 GINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=3.6e-05 Score=73.23 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC-HhH
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD-VIT 154 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 154 (626)
..+.-....+...|++++|+..++.+++. .|+...+..+.. ..+...++.++|.+.++++... .|+ ...
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~------~i~~~~nk~~~A~e~~~kal~l--~P~~~~l 376 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAG------DILLEANKAKEAIERLKKALAL--DPNSPLL 376 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHhc--CCCccHH
Confidence 34444445566777888888888887766 777777777653 5677778888888888887776 444 555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHH
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL 234 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (626)
...+..++.+.|++.+|+.+++.....+ +.|+..|..|..+|...|+..++....-+.
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~--------------- 434 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEG--------------- 434 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHH---------------
Confidence 6667778888888888888888777765 677777888888888888777776654443
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
|...|+++.|...+....+.
T Consensus 435 ---~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ---YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ---HHhCCCHHHHHHHHHHHHHh
Confidence 44567777777777776654
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00024 Score=61.66 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=79.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG 452 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 452 (626)
.++-+....|+.+.|...++.+...- +.+..+-..-.--+-..|++++|+++++.+.+.+ |.|..++-.=+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33344445555555555555554431 2222222211222333455666666666555444 444444444444444555
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN---KTSKVVE 529 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~ 529 (626)
+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.++++.-.. |.++..+..+...+.-.| +..-+.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555543 34456666666666666666666666666665532 334444444544433322 3345566
Q ss_pred HHHHhhc
Q 040279 530 LLHKMAE 536 (626)
Q Consensus 530 ~~~~~~~ 536 (626)
+|.+.++
T Consensus 213 yy~~alk 219 (289)
T KOG3060|consen 213 YYERALK 219 (289)
T ss_pred HHHHHHH
Confidence 6666665
No 134
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=4.6e-07 Score=52.95 Aligned_cols=32 Identities=38% Similarity=0.775 Sum_probs=15.1
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYM 499 (626)
Q Consensus 468 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (626)
|+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=1.1e-05 Score=66.58 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.....+...+...|++++|.+.|+.+...+ +.+...|..+..++...|++++|...+++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444455555555555555555555432 2244555555555555555666665555555542 33444555555555
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 040279 519 LQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~ 536 (626)
...|++++|...++..++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555666666666655555
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0041 Score=64.05 Aligned_cols=498 Identities=15% Similarity=0.113 Sum_probs=250.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
.+.++.....|+.++|..+++.....++. |..+...+-..|.+.|++++|..+|+++.+. .|+......+.
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lF------ 117 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLF------ 117 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHH------
Confidence 34444444445888888777776555444 7777888888888888888888888888765 66643333333
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChH-----HHHHHHHHHHhCCCCCCccccccHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRT-GNLS-----VALRLHKKMVSGDYENGLISKTNIFSYS 197 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~-----~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (626)
.+|.+.+++.+-.+.--++-+. ++-+...+=++++...+. ...+ .-+.+-++|.+.-.+.+ +.-.+..-..
T Consensus 118 -mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~-gk~~s~aE~~ 194 (932)
T KOG2053|consen 118 -MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK-GKIESEAEII 194 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC-CccchHHHHH
Confidence 3445555554433333333332 233444444455554432 1222 23345556665443222 1111112222
Q ss_pred HHHHHHHhcCCcchHHHHHH-HHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-
Q 040279 198 IIIDSLCKEGLVDKAKELFL-EMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK- 275 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 275 (626)
.-...+...|.+++|++++. ...+.-..-+...-+.-+..+...++|.+..++-.++...|.. | |......+.+
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~kl 270 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKL 270 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHH
Confidence 23344556677888888873 3333322223344455667777888888888888888776543 2 3332221111
Q ss_pred --c-------------CCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCChhhHH
Q 040279 276 --G-------------GKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL---VGRIDTAREIFLSMHSKGCKHTVVSYN 337 (626)
Q Consensus 276 --~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (626)
. +..+...+..++.... .....|-+-+.++.+ -|+.+++...|-+ +-| +-.++.
T Consensus 271 Le~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg---~kpcc~ 342 (932)
T KOG2053|consen 271 LELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFG---DKPCCA 342 (932)
T ss_pred HHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhC---CCcHhH
Confidence 0 1111111111111111 022233333433333 3566655443322 222 334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHHcCC-----HHHHHHHHHHHH---hCC----
Q 040279 338 ILINGYCKILNVEEAMSLYRQIISNGVRQTVI-------TYNTLLSGLFQAGQ-----AGYAQKLFDEMK---LYN---- 398 (626)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~a~~~~~~~~---~~~---- 398 (626)
.=+..|...=..+.-..++....... ++.. .+...+..-...|. .+....++.+.. ++|
T Consensus 343 ~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~ 420 (932)
T KOG2053|consen 343 IDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLS 420 (932)
T ss_pred hhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccc
Confidence 55556666666666666666665431 1111 01111111122231 223333333321 122
Q ss_pred --CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 399 --VEPDLS---------TYNILIDGLCKNNCVQ---EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 399 --~~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
+-|+.. +.+.+++.+.+.++.. +|+-+++.-.... +.|..+--.++..|.-.|-+..|.++|+.+
T Consensus 421 K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tL 499 (932)
T KOG2053|consen 421 KDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTL 499 (932)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhc
Confidence 222221 2345666777777655 3444444444332 445555566778888888888888888887
Q ss_pred ccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-C
Q 040279 465 PQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL-V 542 (626)
Q Consensus 465 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 542 (626)
.-+.+..|...|. +...+...|++..+...+....+. ...+. .+-..+..+| +.|.+.+..++..-=.+..+.. .
T Consensus 500 dIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~ 576 (932)
T KOG2053|consen 500 DIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQK 576 (932)
T ss_pred chHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHH
Confidence 7666665544443 234455667888888777776653 11122 2333333344 6677766655433222200000 1
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 543 PDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 543 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
--..+-+..++.+...++.++-...++.+
T Consensus 577 ~a~~VE~~~l~ll~~~~~~~q~~~~~~~~ 605 (932)
T KOG2053|consen 577 WACRVENLQLSLLCNADRGTQLLKLLESM 605 (932)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHhcc
Confidence 11223345566667788888877777776
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=1.1e-05 Score=66.44 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=89.1
Q ss_pred HHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 040279 460 LFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE 538 (626)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (626)
.++++... .| +......++..+...|++++|.+.++.+.+.+ +.+...+..+...+...|++++|...++..++
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 79 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-- 79 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455543 33 44566778888999999999999999998864 55778889999999999999999999999987
Q ss_pred CCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 539 RNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 539 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.| +...+..++.++...|++++|.++++++.
T Consensus 80 --~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 80 --LDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred --cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556 57888899999999999999999999986
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=2.1e-05 Score=75.69 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
....++..+...++++.|+.+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666666778888888888887752 44 44457777777788888888888888653 446666676777788
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++++.|+++.+++++ ..|+ ..+|..|+.+|...|++++|.-.++.++
T Consensus 246 ~k~~~~lAL~iAk~av~----lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE----LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888 7774 5688888888888888888888888874
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=4.7e-05 Score=63.41 Aligned_cols=126 Identities=14% Similarity=0.192 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV--VTFNTL 514 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 514 (626)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4778888888888887752 222 223344567788888999999999888886522221 244556
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
...+...|++++|+..++.... -......+...+++|.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888999999998877543 2234556777888899999999999888875
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00055 Score=65.43 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=79.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 040279 378 LFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457 (626)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (626)
+...|+++.|+..++.+.+.. +.|+.......+.+.+.|+.++|.+.++.+.... |........+.+++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 344566666666666655541 3344444445556666666666666666666543 22244555566666666666666
Q ss_pred HHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 458 WELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+.++++.... .+-|+..|..|..+|...|+..++.....+. |...|++++|+..+..+.+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 6666666554 2335666666666666666655555433332 3445666666666666655
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.0001 Score=61.39 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 490 (626)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+......|+ ......+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666766676666543 222 22233345566677777777777777776532222 123444566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
+|+..++..... ......+...+.++.+.|++++|...|+++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777554322 223445556666777777777777777664
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=0.007 Score=60.46 Aligned_cols=212 Identities=11% Similarity=0.043 Sum_probs=137.5
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH--HH--HHHHHhcCCcchHHHHHHHHhhCCC
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS--II--IDSLCKEGLVDKAKELFLEMKGRGI 224 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~l--~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (626)
.|.+..|..+.......-.++-|...|-+...-. |........+.. .+ ...-.--|++++|.++|-++-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 6788899988888877777888887776653311 000000000000 00 111222488999999998887652
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHH
Q 040279 225 NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL-GPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNS 303 (626)
Q Consensus 225 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 303 (626)
..|..+.+.|+|-.+.++++.--.. .-..-..+|+.+...++....+++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3466778889998888777542110 00112347888889999889999999888764321 24
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 040279 304 LMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQ 383 (626)
Q Consensus 304 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (626)
.+.++.+..++++...+-+.+.+ +....-.+..++.+.|.-++|.+.|-+... + ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHH
Confidence 56777777777776666555543 667778888999999999998887754321 1 245667788888
Q ss_pred HHHHHHHHHHHH
Q 040279 384 AGYAQKLFDEMK 395 (626)
Q Consensus 384 ~~~a~~~~~~~~ 395 (626)
|.+|.++-+...
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 888888776653
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.01 E-value=0.00012 Score=59.49 Aligned_cols=93 Identities=8% Similarity=-0.071 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVD 553 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~ 553 (626)
....+...+...|++++|.++|+-+...+ +-+..-|-.|..++...|++++|+..|..+.. +.| |+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~----L~~ddp~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ----IKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCchHHHHHHH
Confidence 33444445555666666666666665542 23344555555566666666666666666655 445 3455666666
Q ss_pred HHHccCCHhHHHHHHHHHH
Q 040279 554 LLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~ 572 (626)
++...|+.+.|.+.|+.+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666553
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00026 Score=68.29 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA 451 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (626)
..++..+...++++.|..+++++.+.. |+. ...++..+...++..+|.+++++..... +.+..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777653 443 3345666666667777777777666443 44566666666667777
Q ss_pred CCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
++++.|+.+.+++.+. .|+ ..+|..|+.+|...|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777777764 344 45777777777777777777777766653
No 145
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=0.025 Score=56.73 Aligned_cols=223 Identities=13% Similarity=0.036 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH---HHhhhhhhhhhhhcCC
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNIL---INCFGNKERGLCVENR 132 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l---l~~~~~l~~~~~~~~~ 132 (626)
+++|.++.++ .|.+..|..++..-...-.++-|...|=+... .|.......+ .+--...+..-.--|+
T Consensus 679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 6677776663 46678898888777766666777666644332 2222111000 0000000011122488
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchH
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKA 212 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 212 (626)
+++|.++|-++-++ ...|..+.+.|++-...++++.--... ....-..+++.+...+.....+++|
T Consensus 750 feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~-----dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDD-----DDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877654 234667778888877777765422111 0112244677778888877888888
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 213 KELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
.+.|..-... ...+.++....++++.+.+-+.+. -+....-.+..++.+.|.-++|.+.+-+-
T Consensus 816 ~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~--- 878 (1189)
T KOG2041|consen 816 AKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR--- 878 (1189)
T ss_pred HHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---
Confidence 8877654321 235566666666666555554442 25556677888888889888888766442
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 293 GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSM 324 (626)
Q Consensus 293 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 324 (626)
+.+ ...+..|...++|.+|.++-++.
T Consensus 879 s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 879 SLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 23466777788888887776554
No 146
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.97 E-value=0.016 Score=54.05 Aligned_cols=249 Identities=15% Similarity=0.078 Sum_probs=142.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 040279 311 VGRIDTAREIFLSMHSKGCKHTVVS--YNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQ 388 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 388 (626)
.|+++.|.+-|+.|... |.... ...|.-.-.+.|+.+.|..+-+.....- +.-...+...+...+..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 45666666666665542 11111 1111111223555666665555554431 222344455566666666666666
Q ss_pred HHHHHHHhCC-CCCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 040279 389 KLFDEMKLYN-VEPDLS--TYNILIDGLC---KNNCVQEAVKLFHMLEMNKFEFGIE-IFNCLIDGLCKAGRLDNAWELF 461 (626)
Q Consensus 389 ~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 461 (626)
++.+.-+... +.++.. .-..|+.+-. -..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHH
Confidence 6666544321 222221 1111221111 122345555544444433 33322 2233456788999999999999
Q ss_pred HhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 462 HKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-GCAP-NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
+.+-+. .|.+.++.. ..+.+.|+. ++.-+++..+. .++| +..+...+..+....|++..|..--+...+
T Consensus 287 E~aWK~--ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--- 357 (531)
T COG3898 287 ETAWKA--EPHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--- 357 (531)
T ss_pred HHHHhc--CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---
Confidence 999886 455555433 334555653 33333333221 1344 456777888888899999999999998888
Q ss_pred CCCCCHHHHHHHHHHHH-ccCCHhHHHHHHHHHHhhc
Q 040279 540 NLVPDDTTFSIVVDLLA-KDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 540 ~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 575 (626)
..|....|..|.++-. ..|+-.++..++-+.+++.
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 8899999999998865 5699999999999987653
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=0.00039 Score=56.65 Aligned_cols=95 Identities=8% Similarity=-0.067 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
..-.+..-+...|++++|.++|+-+.... +-+..-|..|..++-..|++++|+..|......+ +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33445555678888999998888887753 2356677888888888899999999999888875 456778888888888
Q ss_pred hcCCHHHHHHHHHHhhc
Q 040279 520 QNNKTSKVVELLHKMAE 536 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~ 536 (626)
..|+.+.|.+.|+.++.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999888877
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=2.2e-05 Score=58.17 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhH
Q 040279 486 KGKLEKANDFLLYMEKNGCA-PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHE 563 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 563 (626)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+ ..|+ ......++.++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~----~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK----LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT----HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC----CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 46777777777777765311 1344455567777777777777777776 33 3333 3444455777777777777
Q ss_pred HHHHHHHH
Q 040279 564 CSAVSKSS 571 (626)
Q Consensus 564 A~~~~~~~ 571 (626)
|++.++++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 77777653
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00022 Score=57.11 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC----HH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----DT 546 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~ 546 (626)
++..++..+...|++++|.+.|.++.+.. |+ ...+..+..++.+.|++++|...++.+.. ..|+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK----KYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH----HCCCCCcccH
Confidence 34455556666666666666666666532 22 23445566666666777777777766665 2232 34
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+..++.++.+.|++++|.+.++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 56666666666777777777776664
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00018 Score=54.84 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHH
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDL 554 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 554 (626)
+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+ ..| +...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE----LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchhHHHHHHHH
Confidence 4445556666667777777776666542 33345556666666666777777777776665 334 33456666666
Q ss_pred HHccCCHhHHHHHHHHHH
Q 040279 555 LAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~ 572 (626)
+...|++++|...+++..
T Consensus 78 ~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 78 YYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 667777777777766654
No 151
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.92 E-value=0.022 Score=54.24 Aligned_cols=454 Identities=13% Similarity=0.156 Sum_probs=233.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 040279 84 AVAKNRHYDAVISFYRKLVSIGLLPDFLTLN-ILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGF 162 (626)
Q Consensus 84 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 162 (626)
.+.+++++.+|..+|.++-+.. ..++..+. .++. ++++++|. .++.+.....+....+. .| ...|..+..+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~--grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L 87 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLG--GRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKAL 87 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHh--hHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHH
Confidence 3557888888888888776431 12222222 2221 23344555 34566666666665554 23 33444444443
Q ss_pred --HhcCChHHHHHHHHHHHhC--CCCCCc------cccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC----CCCCc
Q 040279 163 --CRTGNLSVALRLHKKMVSG--DYENGL------ISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG----INPAV 228 (626)
Q Consensus 163 --~~~g~~~~A~~~~~~~~~~--~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 228 (626)
.+.+.+.+|++.+..-.+. +..+.. ..-+|...-+..++.+...|++.+++.+++++..+= ..-+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 4688888888887765543 110000 001122223456778889999999999999887652 23577
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040279 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDL---GPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLM 305 (626)
Q Consensus 229 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 305 (626)
.+|+.++-.+.+ ..|-++.+. .+-|+ |..++-.|.+.=.. ++.-.-..+.|.......++
T Consensus 168 d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 168 DMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHH
Confidence 778775554433 233333322 12222 33333334322110 11100001223333333333
Q ss_pred HHHHhc--CChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CChhhHHHHHHHH
Q 040279 306 DGYCLV--GRIDTAREIFLSMHSKGCKHTVV-SYNILINGYCKILNVEEAMSLYRQIISNGVR----QTVITYNTLLSGL 378 (626)
Q Consensus 306 ~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~ 378 (626)
....-. ....--.++++.....-..|+.. ....+...+.+ +.+++..+-+.+...... .-..+|..++...
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 222211 11122223333333332233322 12223333322 444444444433322110 1234567777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH-
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYN-------ILIDGLC----KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID- 446 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 446 (626)
.+.++...|...+.-+... .|+...-. .+.+..+ ..-+...-+.+|+.+...++. .......++.
T Consensus 309 Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~ 385 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFG 385 (549)
T ss_pred HHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHH
Confidence 8888888888777766543 33322111 1112222 112233445555655544321 2222333333
Q ss_pred --HHHHcCC-HHHHHHHHHhcccCCCCCCHhHHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHH
Q 040279 447 --GLCKAGR-LDNAWELFHKLPQKGLVPTVVTYSIMIH----GLCR---KGKLEKANDFLLYMEKNGCAPNV----VTFN 512 (626)
Q Consensus 447 --~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~~----~~~~ 512 (626)
-+-+.|. -++|+.+++.+.+-. .-|...-|.+.. +|.+ ...+.+-..+-+-+.+.|++|-. ..-+
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 2344555 788999999888731 223444333222 2221 12344444444555566776643 3445
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 513 TLMHG--FLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 513 ~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.|..+ +...|++.++.-+-.-..+ +.|++.+|..++-++....+++||..++...
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTK----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55543 4578999999988888888 9999999999999999999999999999998
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=9.9e-05 Score=65.91 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=83.5
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 040279 446 DGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 524 (626)
.-..+.+++.+|+..|.++++.. +.|.+.|..-..+|.+.|.++.|++-.+..+.. .|+ ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34678899999999999999863 346777888899999999999999999999884 455 46999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 525 SKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
++|++.|+++++ +.|+..+|..
T Consensus 166 ~~A~~aykKaLe----ldP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALE----LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhc----cCCCcHHHHH
Confidence 999999999999 9998877654
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00021 Score=54.38 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+.+++..+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666677777777777665532 2233556666666667777777777777766653 3344566666667777
Q ss_pred cCCHHHHHHHHHHhhc
Q 040279 521 NNKTSKVVELLHKMAE 536 (626)
Q Consensus 521 ~g~~~~a~~~~~~~~~ 536 (626)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776655
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.017 Score=54.30 Aligned_cols=276 Identities=13% Similarity=0.004 Sum_probs=143.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC-CcchHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP-AVVVCTTLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~ 236 (626)
....+.+..++..|+..+..+++.. +.+..-|..-+..+...|++++|.--.+.-... +| ......-.-.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQ 125 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhh
Confidence 3445666677778888888887765 555666666667777777777776655544432 11 1122333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHhhHHHHH-HHHHhcCCh
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL-NPDRFTYNSLM-DGYCLVGRI 314 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll-~~~~~~g~~ 314 (626)
++...++..+|.+.++. ...+ ....++..++....... +|.-.++..+- .++.-.|++
T Consensus 126 c~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred hhhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 44445555555555441 1111 11222233333222211 13333333332 355667888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-------------HHHHHHHHc
Q 040279 315 DTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN-------------TLLSGLFQA 381 (626)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~ 381 (626)
++|.++--.+.+.+.. +......-..++.-.++.+.+...|++.+..+ |+...-. .-..-..+.
T Consensus 186 ~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred hhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 8888777776665311 22222222233445677888888888877653 3332211 112233456
Q ss_pred CCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 040279 382 GQAGYAQKLFDEMKLY---NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW 458 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (626)
|.+..|.+.|.+.+.. .+.++...|.....+..+.|+.++|+.-.+...... +.-+..+..-..++...++|++|.
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766542 223344445555555566677777766666555432 111223333334455556666666
Q ss_pred HHHHhccc
Q 040279 459 ELFHKLPQ 466 (626)
Q Consensus 459 ~~~~~~~~ 466 (626)
+-++...+
T Consensus 342 ~d~~~a~q 349 (486)
T KOG0550|consen 342 EDYEKAMQ 349 (486)
T ss_pred HHHHHHHh
Confidence 66666655
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00017 Score=64.51 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKL 489 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 489 (626)
.-..+.+++.+|+..|...+... +-|...|..-..+|.+.|.++.|++-.+..+.. .|+ ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34667899999999999999876 567888888899999999999999999998874 344 67899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
++|++.|++.++ +.|+..+|..=+.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 999999999998 5777776654433
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00081 Score=57.91 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
+..+...+...|++++|...|++..+....+. ...+..++.++.+.|++++|.+.+++..+.. +.+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444444444555555555554443211111 2344445555555555555555555555431 22233444444444
Q ss_pred HhcCC--------------HHHHHHHHHHhhc
Q 040279 519 LQNNK--------------TSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~--------------~~~a~~~~~~~~~ 536 (626)
...|+ +++|.++++++..
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 44443 3555555555554
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.83 E-value=4.1e-05 Score=45.50 Aligned_cols=33 Identities=48% Similarity=0.746 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN 262 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 262 (626)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.81 E-value=4.3e-05 Score=45.38 Aligned_cols=33 Identities=36% Similarity=0.785 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN 507 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (626)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00042 Score=67.23 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=78.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (626)
-...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++.+ +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3455667889999999999888753 2357778888888888999999999999888864 4456778888888888999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 524 TSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 524 ~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
+++|+..|+++++ +.|+......
T Consensus 86 ~~eA~~~~~~al~----l~P~~~~~~~ 108 (356)
T PLN03088 86 YQTAKAALEKGAS----LAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHHH----hCCCCHHHHH
Confidence 9999999999888 7776544433
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0028 Score=59.51 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=76.2
Q ss_pred HHHHHHHc-CCHHHHHHHHHhcccC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-HH
Q 040279 444 LIDGLCKA-GRLDNAWELFHKLPQK----GLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-----V-VT 510 (626)
Q Consensus 444 l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~-~~ 510 (626)
+...|... |++++|++.|++..+. | .+. ..++..++..+.+.|++++|.++|+++.......+ . ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33455555 6777777777776552 1 111 33566777788888999999999988876532211 1 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHHHc--cCCHhHHHHHHHHH
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLLAK--DEKYHECSAVSKSS 571 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 571 (626)
|...+-++...||+..|.+.+++......++..+ ......|+.++.. ...+++|+.-|+++
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3344556777889999999999887622333333 3445666776654 45566666666665
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00054 Score=66.49 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK 488 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 488 (626)
....+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456677899999999999999776 5678889999999999999999999999998853 2357789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
+++|+..|++..+. .|+...+..++
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999999999985 45554444443
No 162
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.78 E-value=0.0002 Score=66.45 Aligned_cols=274 Identities=14% Similarity=0.120 Sum_probs=157.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH----CCCC-CCHhHHHH
Q 040279 83 GAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIA----FGVR-PDVITYGT 157 (626)
Q Consensus 83 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ 157 (626)
.-+++.|+.+..+.+|+.+++.| ...+..+-..|+.++++|.-.+++++|++....=+. .|-+ -...+-..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 44789999999999999999765 334555555577789999999999999987653211 1100 01223334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC--------------------cchHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL--------------------VDKAKELFL 217 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~ 217 (626)
|...+--.|.+++|+..-.+-+....+.+. -......+..+...|...|+ ++.|.+.|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgD-rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGD-RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhH-HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 556666677888877654443221100000 01123345556666655442 123333333
Q ss_pred HHh----hCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040279 218 EMK----GRGI-NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD----LGPR-PNLLTFNVMIDCLCKGGKINEANGLLE 287 (626)
Q Consensus 218 ~~~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (626)
+-. +.|- -..-..|..|.+.|.-.|+++.|+...+.-+. -|-. .....+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 211 1110 01124566666777777888888766554332 2211 122356667777777888888887776
Q ss_pred HHHhc----C-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 288 LMIQR----G-LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK-----GCKHTVVSYNILINGYCKILNVEEAMSLYR 357 (626)
Q Consensus 288 ~~~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (626)
..... | -.....+..+|.+.|.-..++++|+.++.+-... +..-....+..+..+|...|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 64332 2 1223445566777777777777887776553321 111234567777788888888888877766
Q ss_pred HHHH
Q 040279 358 QIIS 361 (626)
Q Consensus 358 ~~~~ 361 (626)
..++
T Consensus 340 ~hl~ 343 (639)
T KOG1130|consen 340 LHLR 343 (639)
T ss_pred HHHH
Confidence 6544
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=5.2e-05 Score=56.17 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHhHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 54 INLNEARYFFGYMTHMQPS-PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
|+++.|+.+|++++...|. ++...+..++.++.+.|++++|+.++++ .+. .|+......++ ++++...|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~------a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLL------ARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHH------HHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHH------HHHHHHhCC
Confidence 5899999999999988774 3555677789999999999999999988 322 44554555554 478899999
Q ss_pred HHHHHHHHHHH
Q 040279 133 IKEATWLFKNM 143 (626)
Q Consensus 133 ~~~A~~~~~~~ 143 (626)
+++|+.+|++.
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999863
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00079 Score=53.90 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC--CCcchH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN--PAVVVC 231 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 231 (626)
++..++..+.+.|++++|.+.|+.+...... .+.....+..+...+.+.|+++.|.+.|+.+...... ....++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3445555666666666666666666554300 0111334445566666666666666666665543211 112345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
..+..++.+.|++++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 55555566666666666666666554
No 165
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=5.7e-05 Score=44.49 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLP 108 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 108 (626)
.+|+.++.++.+.|+++.|..+|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999887
No 166
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=6.6e-05 Score=44.20 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 167
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.00082 Score=65.24 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=80.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 040279 364 VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN--VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIF 441 (626)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (626)
.+.+......++..+....+.+.+..++.+..... ...-..|..+++..|.+.|..++++.+++.=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455566666666666666777777777766531 1112234457777777777777777777776777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
+.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776655555556655555544443
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0022 Score=65.05 Aligned_cols=143 Identities=10% Similarity=-0.011 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc--------CCHHHHHHHHHhccc
Q 040279 400 EPDLSTYNILIDGLCK--N---NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA--------GRLDNAWELFHKLPQ 466 (626)
Q Consensus 400 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 466 (626)
+.+...|...+.+... . ++...|..+|++..+.. |.....+..+..++... +++..+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3444555555544322 1 22445666666665543 22333333333322211 123344444444333
Q ss_pred C-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 467 K-GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 467 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
. ....+...|.++.......|++++|...++++.+. .|+...|..++..+...|+.++|.+.++++.. +.|..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~----L~P~~ 486 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN----LRPGE 486 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC
Confidence 1 12334566777766666778888888888888885 46777788888888888888888888888877 77765
Q ss_pred HHHH
Q 040279 546 TTFS 549 (626)
Q Consensus 546 ~~~~ 549 (626)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5543
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0056 Score=57.35 Aligned_cols=157 Identities=13% Similarity=-0.009 Sum_probs=85.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---H-------
Q 040279 341 NGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNIL---I------- 410 (626)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~------- 410 (626)
.++...+++++|.+.--.+.+... .+......-...+...++.+.+...|.+.++. .|+...-..+ .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 345567777777777766666421 12222222223444567777777777777764 3443322211 1
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHH
Q 040279 411 ---DGLCKNNCVQEAVKLFHMLEMNK---FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGL 483 (626)
Q Consensus 411 ---~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 483 (626)
+-..+.|++..|.+.+.+.+... ..++...|.....+..+.|+.++|+.--++.... .+. ...|..-..++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~ 331 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCH 331 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHH
Confidence 11245666777777776665432 2344445555555666667777777666666552 111 22233333455
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 040279 484 CRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~ 502 (626)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5566677777777666654
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.72 E-value=0.017 Score=48.00 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CCHhHHHH
Q 040279 400 EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PTVVTYSI 478 (626)
Q Consensus 400 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 478 (626)
.|+...-..+..+..+.|+..+|...|++....-+..|......+.++....+++..|...++++.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666777777788888888888877776555667777777777777778888888777777663210 11333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
+.+.+...|.+.+|+.-|+..... -|+...-......+.++|+.+++..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 667777778888888888877774 456555555555666677665554443333
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.00081 Score=63.16 Aligned_cols=176 Identities=11% Similarity=0.069 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC----CCCCC-
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF----GVRPD- 151 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~- 151 (626)
.|...+..|-..|+|++|...|.+........+. ....-..+...+..+ +..++++|+..+++.... | .++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 3455555666777777777777766432111111 001111111222333 333777777777665432 2 111
Q ss_pred -HhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC--
Q 040279 152 -VITYGTLINGFCRT-GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA-- 227 (626)
Q Consensus 152 -~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 227 (626)
...+..+...|... |++++|++.|+++...-...+ ....-...+..+...+.+.|++++|.++|+++.......+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 22455566667666 788888888887764310000 0111233455666777777777777777777765422211
Q ss_pred ---c-chHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 228 ---V-VVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 228 ---~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
. ..+...+-++...||...|.+.+++....
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1 12233344556667777777777777654
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.0016 Score=56.13 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN--VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
...+..++..+...|++++|...|++..+.+..+. ...+..++..+.+.|++++|...++++++ +.| +...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE----LNPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHH
Confidence 45678888889999999999999999987532222 35788889999999999999999999998 667 456677
Q ss_pred HHHHHHHccCC
Q 040279 550 IVVDLLAKDEK 560 (626)
Q Consensus 550 ~l~~~~~~~g~ 560 (626)
.++.++...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 78888887776
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.00081 Score=62.84 Aligned_cols=145 Identities=16% Similarity=0.131 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG-LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDG 447 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (626)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888999999999988543 2233444444444 23356677799999887765 36677888888888
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
+.+.|+.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+. -|+...+..+..-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 88999999999999998875 3322 247888888888889999999988888874 44433444344333
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.63 E-value=0.017 Score=47.98 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=110.9
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 040279 435 EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTF 511 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 511 (626)
.|+...--.|..+....|+..+|...|++...--+.-|......+..+....+++.+|...++.+.+.+ |. +.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 567777778889999999999999999998875455678888899999999999999999999998863 32 3355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 512 NTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 512 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
..+.+.+...|++.+|...|+.+++ .-|+...-......+.++|+.++|..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~----~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS----YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6678899999999999999999998 788888777777888999998888776666543
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.013 Score=53.42 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=50.6
Q ss_pred ChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 37 PETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPIS--SFNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
++.............| ++++|...|+.++...|.+... +...++.++.+.+++++|+..+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g--~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDG--NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4444555556666665 9999999999999987764322 2345778889999999999999999977
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0016 Score=60.86 Aligned_cols=125 Identities=10% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR-KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
|..++....+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+...+. ++.+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444444555555555554321 1123333333333222 33444455555555443 3334444555555555
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCCH----HHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPDD----TTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
..|+.+.|..+|++.+. .-|.. ..|...+..-.+.|+++.+.++.+++
T Consensus 82 ~~~d~~~aR~lfer~i~----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 82 KLNDINNARALFERAIS----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HTT-HHHHHHHHHHHCC----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555554 12221 24455555445555555555555554
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.0011 Score=64.26 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=66.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQR--GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNIL 339 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (626)
+......+++.+....+++.+..++-+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555566666666555544 11122334446666666666666666666666666666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 040279 340 INGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ 380 (626)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (626)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666655555444444444444444433
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.0015 Score=55.98 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP--TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
..+..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++..+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555556666666666666665432111 12356666666666677777777666666542 223344444444
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 040279 517 GFL-------QNNKTSKVVELLH 532 (626)
Q Consensus 517 ~~~-------~~g~~~~a~~~~~ 532 (626)
.+. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 5556554443333
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0013 Score=56.36 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=83.5
Q ss_pred HHHHHHHHHhccc-CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 454 LDNAWELFHKLPQ-KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP--NVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 454 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
+..+...+..+.+ .+..-....|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432 2212235567888888999999999999999998753222 234788899999999999999999
Q ss_pred HHHhhcCCCCCCCC-HHHHHHHHHHHH-------ccCCHhHHHHHHHHHH
Q 040279 531 LHKMAEPERNLVPD-DTTFSIVVDLLA-------KDEKYHECSAVSKSSY 572 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~ 572 (626)
++++.. +.|+ ...+..++.++. ..|++++|...+++..
T Consensus 95 ~~~Al~----~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 95 YFQALE----RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHH----hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 999998 5664 556667777777 8889887777776653
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00025 Score=50.15 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhc
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN-KTSKVVELLHKMAE 536 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 536 (626)
.+|..++..+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.++++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444444444444444444432 223334444444444444 34444444444443
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.03 Score=51.01 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.+.+-|.+.|.+..|..-++.+++...+.+...+.+..++.+|.+.|..++|.++.+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 55667888999999999999988732233335677888889999999999998887765
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.0053 Score=62.43 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=79.4
Q ss_pred cCCCCCHhhHHHHHHHHHh--c---CChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhh--cCCHHHHHHHHH
Q 040279 69 MQPSPPISSFNLLFGAVAK--N---RHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCV--ENRIKEATWLFK 141 (626)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~--~~~~~~A~~~~~ 141 (626)
..++.+..+|...+++... . ++...|+.+|+++++. .|+.......+..+......+.. ..+...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456688999998887653 2 3367999999999987 78764443333211111111110 112233333333
Q ss_pred HHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHh
Q 040279 142 NMIAF-GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMK 220 (626)
Q Consensus 142 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (626)
+.... ..+.+...+..+.......|++++|...+++++..+ ++...|..+...+...|+.++|.+.+++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33322 112334455555555555666666666666666654 345566666666666666666666666665
Q ss_pred hC
Q 040279 221 GR 222 (626)
Q Consensus 221 ~~ 222 (626)
..
T Consensus 481 ~L 482 (517)
T PRK10153 481 NL 482 (517)
T ss_pred hc
Confidence 54
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.53 E-value=0.0003 Score=49.71 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccC-CHhHHHHHHHHHH
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDE-KYHECSAVSKSSY 572 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 572 (626)
+..+|..++..+...|++++|+..|+++++ +.|+ ...+..++.++...| ++++|.+.++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 467889999999999999999999999999 7785 678999999999999 7999999999986
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00042 Score=48.26 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...+...|++++|...|+++++ ..| +...+..++.++...|++++|..+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK----QDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666666666666666666 345 34556666666666666666666666664
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00035 Score=48.67 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+..+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666543 22444555566666666666666666666655
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.46 E-value=0.00036 Score=49.12 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
|++++|+..|+.++...|. +..++..++.++.+.|++++|..+++++... .|+...+..++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4899999999999998777 8888889999999999999999999999977 67766666554
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0056 Score=55.38 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=43.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCC-CHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN---KTSKVVELLHKMAEPERNLVP-DDTT 547 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~p-~~~~ 547 (626)
|...|..|..+|...|+.+.|..-|.+..+.. ++|...+..+..++..+. ...++..++++++. ..| |...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~----~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA----LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh----cCCccHHH
Confidence 34445455555555555555555554444431 333444444444333211 22444445555544 334 2333
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 548 FSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
...++..+...|++.+|...++.|++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444444455555555555555444
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.0016 Score=60.70 Aligned_cols=268 Identities=17% Similarity=0.163 Sum_probs=147.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCccccccHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDV----ITYGTLINGFCRTGNLSVALRLHKKMVS--GDYENGLISKTNIFSYS 197 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~ 197 (626)
+..+|+.|+......+|+..++.| ..|. .+|..|..+|.-.+++++|++++..-+. +.... --.....-.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd---klGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD---KLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc---hhccccccc
Confidence 356889999999999999999987 2243 3467778888888999999997653221 00000 001122223
Q ss_pred HHHHHHHhcCCcchHHHHHHH----HhhCCC-CCCcchHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 040279 198 IIIDSLCKEGLVDKAKELFLE----MKGRGI-NPAVVVCTTLIHGFCCAGN--------------------WEEVNGLFI 252 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 252 (626)
.|.+.+.-.|.+++|+-...+ ..+.|- ......+..|.+.|...|+ ++.|.+.|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 455556666777777654332 222221 1123455566666665443 223333333
Q ss_pred HHHH----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hcCC-CCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 253 EMLD----LGPR-PNLLTFNVMIDCLCKGGKINEANGLLELMI----QRGL-NPDRFTYNSLMDGYCLVGRIDTAREIFL 322 (626)
Q Consensus 253 ~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 322 (626)
+=++ .|-. ..-.+|..+...|.-.|+++.|+...+.-+ +.|- ......+..+.+++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 3221 1100 011244455555556677777776554422 2221 1123455667777777778887777776
Q ss_pred HHHhc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 040279 323 SMHSK----GC-KHTVVSYNILINGYCKILNVEEAMSLYRQIISN----G-VRQTVITYNTLLSGLFQAGQAGYAQKLFD 392 (626)
Q Consensus 323 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 392 (626)
..... |- .........+.+.|.-..++++|+.++.+-+.. + ..-....+..|..+|...|..++|....+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 64332 11 123344556667777677777777776653321 0 11133456667777777777777766655
Q ss_pred HHH
Q 040279 393 EMK 395 (626)
Q Consensus 393 ~~~ 395 (626)
..+
T Consensus 340 ~hl 342 (639)
T KOG1130|consen 340 LHL 342 (639)
T ss_pred HHH
Confidence 543
No 189
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00024 Score=40.66 Aligned_cols=28 Identities=36% Similarity=0.650 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00067 Score=47.74 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=36.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTF 548 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 548 (626)
...|++++|++.|+++.+.. +-+...+..++.+|.+.|++++|.++++++.. ..|+...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHH
Confidence 34566666777766666652 33555666666666667777777777766666 55554333
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.006 Score=47.99 Aligned_cols=93 Identities=19% Similarity=0.117 Sum_probs=62.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPD--VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
..+-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|+.+++........ .+.+......+.-+
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----DELNAALRVFLALA 84 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHH
Confidence 456677888888888888888775543 345666778888888888888888888765310 01122333334446
Q ss_pred HHhcCCcchHHHHHHHHhh
Q 040279 203 LCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~ 221 (626)
+...|+.++|++.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6677888888877766554
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.0096 Score=46.88 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444433322 22333344444444444444444444443
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0033 Score=47.43 Aligned_cols=74 Identities=16% Similarity=0.361 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNV-EPDLSTYNILIDGLCKNN--------CVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.++++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444666666666666666666 566666666665544321 1223444455555555555555555555
Q ss_pred HHH
Q 040279 446 DGL 448 (626)
Q Consensus 446 ~~~ 448 (626)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 444
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.011 Score=53.60 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
.++....-++.-+..+|. |...|..|+..|.+.|+++.|..-|.+..+. .|+....-..+. .....-.......
T Consensus 137 ~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~a---eaL~~~a~~~~ta 210 (287)
T COG4235 137 EMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLA---EALYYQAGQQMTA 210 (287)
T ss_pred cHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHH---HHHHHhcCCcccH
Confidence 456666667777777776 9999999999999999999999999999876 555544333222 1111112334577
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
++..+|+++++.+ +-|..+...|...+...|++.+|...|+.|++..
T Consensus 211 ~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 211 KARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999985 5577888889999999999999999999999876
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.35 E-value=0.0037 Score=57.32 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIV 551 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 551 (626)
|......+.+.|++++|...|+.+++. .|+. ..+..++.+|...|++++|...|+++++...+-......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444343345567788888888887775 3332 4666777777888888888888888876111111125566667
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.++|+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777777888888888888775
No 196
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.33 E-value=0.00031 Score=40.17 Aligned_cols=29 Identities=34% Similarity=0.697 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNG 503 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (626)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555566666666666666665555544
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.33 E-value=0.14 Score=47.96 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=158.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 41 LNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGA--VAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
+..+-..+...|.||-..|++.-.+..+. ...|....-.|+.+ -.-.|+++.|.+-|+.|.. |..+...-+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 33444556666778999999998876533 22244444444433 3468999999999999985 3344444333
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHH--H
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFS--Y 196 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~ 196 (626)
+. .-..-+.|+.+.|.++-++.-..- +.-...+.+++...+..|+++.|+++.+.-..... +.++..- -
T Consensus 159 gL---yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~r 229 (531)
T COG3898 159 GL---YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSR 229 (531)
T ss_pred HH---HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHH
Confidence 21 123346899999999998887653 33456788999999999999999999998765431 1222211 1
Q ss_pred HHHHHHHH---hcCCcchHHHHHHHHhhCCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040279 197 SIIIDSLC---KEGLVDKAKELFLEMKGRGINPAVVV-CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDC 272 (626)
Q Consensus 197 ~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (626)
..|+.+-. -.-+...|.+.-.+..+. .|+..- -..-...+.+.|+..++-.+++.+-+..+.|++. .+..
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~ 303 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYV 303 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHH
Confidence 11221111 112344444444444332 333322 1223345556666666666666665544444321 1122
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCh
Q 040279 273 LCKGGKINEANGLLELMIQR-GLNP-DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK-ILNV 349 (626)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 349 (626)
+.+.|+. ++.-+++..+. .++| +......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-
T Consensus 304 ~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 304 RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCch
Confidence 2333332 22222222111 1122 2333344445555556655555444443332 3444444444443332 3555
Q ss_pred HHHHHHHHHHHHC
Q 040279 350 EEAMSLYRQIISN 362 (626)
Q Consensus 350 ~~A~~~~~~~~~~ 362 (626)
.++...+-+..+.
T Consensus 380 g~vR~wlAqav~A 392 (531)
T COG3898 380 GKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhcC
Confidence 5555555555543
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.26 Score=50.44 Aligned_cols=341 Identities=16% Similarity=0.115 Sum_probs=197.7
Q ss_pred ccccHHHHH-----HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 040279 189 SKTNIFSYS-----IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGN--WEEVNGLFIEMLDLGPRP 261 (626)
Q Consensus 189 ~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~ 261 (626)
++.+..-|. .+++-+...+.+..|+++-..+...-.. ...+|.....-+.+..+ -+++.+.+++-++... .
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 455544444 4567777888999999988887643212 14566666666666532 2334444444333322 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN----PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYN 337 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (626)
....|..+.+.....|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+..+ .+...+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 4457788888888899999998887653222111 01122344455566677777777776666554 1222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH-HHH----HhCCCCCCHHHHHHHHHH
Q 040279 338 ILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF-DEM----KLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~l~~~ 412 (626)
. ...+...|..+|.+..+.. +.. .+-..|....+...+-.+. +.. ...+..|+ .......
T Consensus 583 ~------~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~ 647 (829)
T KOG2280|consen 583 M------TLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANA 647 (829)
T ss_pred H------HHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHH
Confidence 1 2334566777777766532 111 1222222222222221111 110 01122233 2333344
Q ss_pred HHhcCCH----------HHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 413 LCKNNCV----------QEAVKLFHMLEM-NKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 413 ~~~~g~~----------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
+.+.... .+-+++.+.+.. .+......+.+.-+.-+...|+..+|.++-.+..- ||...|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHH
Confidence 4443321 112222233331 12223334455566667788999999999888763 78888888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCH
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 561 (626)
+++..+++++-+++-+... .+.-|.-...+|.+.|+.++|.+++-+... .. ....+|.+.|++
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~-------ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ-------EKVKAYLRVGDV 786 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH-------HHHHHHHHhccH
Confidence 9999999988776654432 356688888999999999999999988754 11 567788889999
Q ss_pred hHHHHHHHH
Q 040279 562 HECSAVSKS 570 (626)
Q Consensus 562 ~~A~~~~~~ 570 (626)
.+|.+.--+
T Consensus 787 ~eAad~A~~ 795 (829)
T KOG2280|consen 787 KEAADLAAE 795 (829)
T ss_pred HHHHHHHHH
Confidence 998877544
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.31 E-value=0.0047 Score=46.67 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGP-RPNLLTFNVMIDCLCKGG--------KINEANGLLELMIQRGLNPDRFTYNSLM 305 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 305 (626)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555555444322 1223444455555555555555555554
Q ss_pred HHH
Q 040279 306 DGY 308 (626)
Q Consensus 306 ~~~ 308 (626)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.031 Score=49.54 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=42.1
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL 111 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 111 (626)
.+..........| ++.+|...|+.+....|.. -..+...++.++.+.|+++.|+..+++.++. .|+..
T Consensus 7 ~lY~~a~~~~~~g--~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~ 76 (203)
T PF13525_consen 7 ALYQKALEALQQG--DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSP 76 (203)
T ss_dssp HHHHHHHHHHHCT---HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-T
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc
Confidence 3444455555555 7888888888887765542 2345666777778888888888888887765 45443
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.094 Score=46.33 Aligned_cols=138 Identities=13% Similarity=0.035 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHH-----HHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTY-----SIM 479 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l 479 (626)
+.+.++..+.-.|.+.-....++.+++...+.++.....++..-.+.||.+.|..+|++..+..-+.|..+. ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555555556667777777777776665667777777777777777777777777755442112222222 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
...|.-++++..|...+.++...+ +.|+...+.-.-+..-.|+..+|++.++.|+. ..|.+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~----~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ----QDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc----cCCccch
Confidence 344555677777777777777654 44555556666666667888888888888877 5554433
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.052 Score=48.06 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=41.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLT-LNILINCFGNKERGLCVENRIKEATWLFKNMIAF 146 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 146 (626)
+...+...+..+...|++.+|+..|+.+... .|+... -.+.+. ++.++.+.|+++.|...+++.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~----la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLM----LAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHH----HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556666777888888888888888765 333222 222221 356777888888888888887765
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.23 E-value=0.21 Score=47.81 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=60.3
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC
Q 040279 68 HMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLP-DFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF 146 (626)
Q Consensus 68 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 146 (626)
+.+|. |..+|..|++.+..+|.+++..+++++|... .| -...|...+ .+-....++.....+|.+.+..
T Consensus 36 kdNPt-nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~-------s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 36 KDNPT-NILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYM-------SGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hcCch-hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHh-------cchhhhhhHHHHHHHHHHHHhh
Confidence 34344 8899999999999999999999999999843 11 112233222 3445567899999999999887
Q ss_pred CCCCCHhHHHHHHHHHHh
Q 040279 147 GVRPDVITYGTLINGFCR 164 (626)
Q Consensus 147 ~~~~~~~~~~~li~~~~~ 164 (626)
..+...|...+.--.+
T Consensus 106 --~l~ldLW~lYl~YIRr 121 (660)
T COG5107 106 --SLNLDLWMLYLEYIRR 121 (660)
T ss_pred --hccHhHHHHHHHHHHh
Confidence 4456667666655444
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.19 E-value=0.022 Score=56.59 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
.+.+-+-.|...|.+++|.++---- .....|..|.......=+++-|.+.|.+.+..
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclg------------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------- 614 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLG------------VTDTDWRELAMEALEALDFETARKAYIRVRDL----------- 614 (1081)
T ss_pred cccccchhhhhccchhhhhcccccc------------eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------
Confidence 3444455666777777765543211 11223444544444444555555555554432
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLEL 288 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (626)
.+-+...-++++.+.|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 ---------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 12233334566667766666543 44556667788888777755
No 205
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.15 E-value=0.33 Score=48.57 Aligned_cols=186 Identities=11% Similarity=0.019 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
+...|...+......|+.+.+.-+|+...-. +..=...|-..+......|+.+-|..++....+--++..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566777788888889999998888887643 222223444445555555888888887777665443333332222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH---HHHHhcccCCCCCCHhHHHHHHHH-----H
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW---ELFHKLPQKGLVPTVVTYSIMIHG-----L 483 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~~~-----~ 483 (626)
.+-..|+++.|..+++.+...- +.-...-..-+....+.|+.+.+. .++...... .-+..+...+..- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHH
Confidence 2344689999999999888664 333334444455666788888777 444444332 1122222222222 3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (626)
.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3457889999999999987 4777778888888766554
No 206
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.42 Score=49.65 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYG 156 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (626)
....-+..+.+..-|+-|+.+-+.-. .+..+...+...| +.-+.+.|++++|...|-+.+.. +.| .
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kY---gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKY---GDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 35566777888888888888776542 3445555555555 35667889999999988887654 222 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.++.-|....+...-..+++.+.+.+ -.+...-..|+.+|.+.++.++-.+..+... .|.. ..-....+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~ 471 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALE 471 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHH
Confidence 46677777778888888888888887 3444556778999999999988777766554 3311 223456667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELM 289 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 289 (626)
.+.+.+-.++|.-+-.+... +......++ -..+++++|++.+..+
T Consensus 472 Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 472 ILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777777777666555432 233333333 3567888888887765
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.43 Score=48.96 Aligned_cols=380 Identities=9% Similarity=0.067 Sum_probs=216.9
Q ss_pred hHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHH--------HCCCCCCHhHHHH-----HHHHHHhcCChHHHHHHHHHH
Q 040279 112 TLNILINCFGNKERGLCVENRIKEATWLFKNMI--------AFGVRPDVITYGT-----LINGFCRTGNLSVALRLHKKM 178 (626)
Q Consensus 112 ~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~ 178 (626)
.-..+|++- +.+.++.+..++++-..+.+++. ..|++.+..-|.. ++.-+...+.+..|+++-+.+
T Consensus 385 ~QK~LL~AA-sfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l 463 (829)
T KOG2280|consen 385 EQKSLLRAA-SFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLL 463 (829)
T ss_pred HHHHHHHHH-hhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHh
Confidence 344455442 46777888888887777666543 3356666555544 467777889999999998887
Q ss_pred HhCCCCCCccccccHHHHHHHHHHHHhcCCc--chHHHHH-HHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 179 VSGDYENGLISKTNIFSYSIIIDSLCKEGLV--DKAKELF-LEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 255 (626)
...- .....+|......+.+..+. +++++.+ +++... . -...+|..+.......|+.+-|..+++.=.
T Consensus 464 ~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~ 534 (829)
T KOG2280|consen 464 NLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEP 534 (829)
T ss_pred CCcc-------ccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCC
Confidence 5322 11256777777777776432 2233333 233222 1 345678888888889999999988875432
Q ss_pred HCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 040279 256 DLGPR----PNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH 331 (626)
Q Consensus 256 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (626)
..+.. .+..-+...+.-+.+.|+.+-...++-.+... .+.. ..+....+...|..+|.+...+.
T Consensus 535 ~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s------~l~~~l~~~p~a~~lY~~~~r~~--- 602 (829)
T KOG2280|consen 535 RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS------SLFMTLRNQPLALSLYRQFMRHQ--- 602 (829)
T ss_pred CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH------HHHHHHHhchhhhHHHHHHHHhh---
Confidence 22110 11222344455555666666665555555443 0111 11222344566777777766542
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHH-HHC-CCCCChhhHHHHHHHHHHcCCHHH----------HHHHHHHHHh-CC
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQI-ISN-GVRQTVITYNTLLSGLFQAGQAGY----------AQKLFDEMKL-YN 398 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~----------a~~~~~~~~~-~~ 398 (626)
+.. .+-+.|.+..+..++-.+..+- ... -+.+-..........+.+...... -+++.+.+.. .+
T Consensus 603 ~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 603 DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1222333333333322221111 000 011111222333344444333111 1122222211 22
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... ++.-|.-
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 22223344455556677899999998877665 6788889888999999999998888776654 2455667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.+.+|.+.|+.++|.+++.+... . .....+|.+.|++.+|.+..-+-.
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHHhc
Confidence 78899999999999998776632 1 156778899999988887665543
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.084 Score=50.46 Aligned_cols=34 Identities=6% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchh
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLG 587 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~ 587 (626)
.+..++.+..-.|+.++|.+.++++. ...|+.|.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~-------~l~~~~W~ 340 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAF-------KLKPPAWE 340 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCCcchh
Confidence 34466666667777777777777775 44566663
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.07 E-value=0.0036 Score=44.71 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|.+.+++++|.++++++.+.+ +.+...+.....++...|++++|.+.++..++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555542 33344445555555555555555555555555
No 210
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.05 E-value=0.28 Score=45.98 Aligned_cols=163 Identities=15% Similarity=0.061 Sum_probs=87.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcC-CHHHHHHHHHHHHHC--------CCCCCH----
Q 040279 86 AKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVEN-RIKEATWLFKNMIAF--------GVRPDV---- 152 (626)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~~---- 152 (626)
.++|+.+.|..++.++.......++.....+-..|-..+......+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4567777777777776543212233333444444445566666677 888887777765443 112222
Q ss_pred -hHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCc
Q 040279 153 -ITYGTLINGFCRTGNLS---VALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228 (626)
Q Consensus 153 -~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (626)
.++..++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+++.+|... +.-..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e 155 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSE 155 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-ccccc
Confidence 24556666676655543 4555555554432 333445555566666677777777777777765 12123
Q ss_pred chHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 040279 229 VVCTTLIHGFCC--AGNWEEVNGLFIEMLD 256 (626)
Q Consensus 229 ~~~~~li~~~~~--~~~~~~a~~~~~~~~~ 256 (626)
..+..++..+.. ......+...+..++.
T Consensus 156 ~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred chHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 344444444321 1223445555555443
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.22 Score=44.12 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH-----
Q 040279 265 TFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNIL----- 339 (626)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 339 (626)
..+.++..+...|.+.-...++.+.++...+.++.....|.....+.||.+.|...|++..+..-+.+....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777778888888888888888776777888888888888899999999998877765333343333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040279 340 INGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407 (626)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (626)
...|.-.+++..|...+.++.... +.++...|.-.-...-.|+..+|.+.++.+.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 234445677777877787777653 224444444333444557788888888888764 34444433
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.99 E-value=0.0023 Score=46.47 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
..+|+.++..+.+.|++++|+..|++.++..- .++ ....+...+..++..+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35789999999999999999999999875410 121 2223344455567788888888888888887654
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.018 Score=52.85 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNG--CAPNVVTFNTL 514 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l 514 (626)
|...+....+.|++++|...|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+.. -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344555666666666555531 22 2344555555666666666666666665431 01112334444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 040279 515 MHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+.++...|++++|..+|++.++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4555556666666666666655
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.95 E-value=0.26 Score=43.92 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=58.7
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 36 SPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
.|+..++.-.....+.| ++++|...|+.+....|.. ...+.-.++.++-+.++++.|+...++..+.-.......|
T Consensus 32 ~p~~~LY~~g~~~L~~g--n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 32 LPASELYNEGLTELQKG--NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 35556666666666665 9999999999998876641 3456667778888999999999999998876433333444
Q ss_pred HHHHHh
Q 040279 114 NILINC 119 (626)
Q Consensus 114 ~~ll~~ 119 (626)
...|.+
T Consensus 110 ~~Ylkg 115 (254)
T COG4105 110 AYYLKG 115 (254)
T ss_pred HHHHHH
Confidence 444443
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.94 E-value=0.019 Score=49.46 Aligned_cols=33 Identities=36% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
-+-|++++++|...|+-||..++..++..+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 345666666666666666666666666666433
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.91 E-value=0.02 Score=47.19 Aligned_cols=86 Identities=17% Similarity=-0.000 Sum_probs=49.0
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
...|++++|..+|.-+...++ -+..-|..|..++-..|++++|+..|......+ .-|+..+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 355666666666665554322 244455556666666666666666666555443 234444555566666666666666
Q ss_pred HHHHHhhc
Q 040279 529 ELLHKMAE 536 (626)
Q Consensus 529 ~~~~~~~~ 536 (626)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666655
No 217
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.026 Score=48.57 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=56.0
Q ss_pred CHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 040279 297 DRFTYNSLMDGYCL-----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITY 371 (626)
Q Consensus 297 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 371 (626)
+..+|..+++.|.+ .|..+-....++.|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 55555555555543 35566666666777777777777777777766543 2211 00001100
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN 417 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (626)
.. ....+-+-|++++++|...|+.||..++..+++.+++.+
T Consensus 112 ---F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 ---FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 00 112334556667777777777777777777776665544
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.73 Score=48.01 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=112.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhh
Q 040279 43 EFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGN 122 (626)
Q Consensus 43 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 122 (626)
.-+...++.. -++-|+.+-+.- ..++..-.......+..+.+.|++++|..-|-+.+.. ++| ..++
T Consensus 339 ~kL~iL~kK~--ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi----- 404 (933)
T KOG2114|consen 339 TKLDILFKKN--LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI----- 404 (933)
T ss_pred HHHHHHHHhh--hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH-----
Confidence 3445555554 466666665542 1111111234555667778999999999999887632 122 2233
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .| .. ..-....+..
T Consensus 405 --~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g------~~--~fd~e~al~I 472 (933)
T KOG2114|consen 405 --KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KG------EW--FFDVETALEI 472 (933)
T ss_pred --HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cc------ce--eeeHHHHHHH
Confidence 3455666777888889999998865 55666789999999999998888777654 22 00 1123455666
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
+.+.+-.++|.-+-..... .......+ +-..+++++|++.+..+
T Consensus 473 lr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7777777777666554433 23333333 34678899999888765
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.86 E-value=0.45 Score=45.20 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCH
Q 040279 410 IDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKL 489 (626)
Q Consensus 410 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 489 (626)
+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++... +-++.-|...+.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 444444555555555544432 34555555555666666666555544322 11334455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
.+|..+..++ + +..-+..|.+.|++.+|.+...+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 5555554441 1 123344455555555555544443
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.84 E-value=0.0068 Score=43.25 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=54.5
Q ss_pred HHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 040279 47 ENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNIL 116 (626)
Q Consensus 47 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 116 (626)
.+.+.+ +++.|..+++.++..+|. ++..|...+..+.+.|++++|...|+++++. .|+......+
T Consensus 4 ~~~~~~--~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~~ 68 (73)
T PF13371_consen 4 IYLQQE--DYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARAL 68 (73)
T ss_pred HHHhCC--CHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 344555 999999999999999776 8889999999999999999999999999987 5665554443
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.027 Score=53.14 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH-HHHHHHH
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD-TTFSIVV 552 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~ 552 (626)
.+++.+..+|.+.+++.+|++..+..++.+ ++|...+-.-..+|...|+++.|+..|+++++ +.|+. .+-..++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK----LEPSNKAARAELI 332 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH----hCCCcHHHHHHHH
Confidence 457788889999999999999999999986 77888888889999999999999999999999 88954 4455555
Q ss_pred HHHHccCCHh-HHHHHHHHHHh
Q 040279 553 DLLAKDEKYH-ECSAVSKSSYR 573 (626)
Q Consensus 553 ~~~~~~g~~~-~A~~~~~~~~~ 573 (626)
.+-.+..++. ...++|..|..
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5555544443 44777888753
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.72 E-value=0.14 Score=42.22 Aligned_cols=87 Identities=11% Similarity=0.008 Sum_probs=64.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+...|++++|..+|+-+...+ +.+..-+..|..++-..+++++|+..|......+. -|+..+.....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 446788888888888776554 44566677777778788888888888877655432 3555566677888888888888
Q ss_pred HHHHHHHHH
Q 040279 493 NDFLLYMEK 501 (626)
Q Consensus 493 ~~~~~~~~~ 501 (626)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888877
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.37 Score=46.25 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH---------cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK---------AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
.|+.++|+.++..+......+++.++..+...|-. ....++|+..|.+.-+. .||..+=-.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 45555555555543333334444555444444321 11256777777766553 24433222222222233
Q ss_pred CCH----HHHHHHH---H-HHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 487 GKL----EKANDFL---L-YMEKNGC---APNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 487 g~~----~~A~~~~---~-~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|.. .+..++- . .+.+.|. ..+.--+.+++.++.-.|++++|.+.+++|.+
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 321 1222222 1 1222332 22333446677888888999999999999987
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.037 Score=46.09 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh-----CCCCCCc
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG-----RGINPAV 228 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 228 (626)
+...++..+...|++++|+.+.+.+...+ |.+...|..+|.+|...|+...|.+.|+.+.. .|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 45567777778888888888888888776 67777888888888888888888888887653 2666654
Q ss_pred ch
Q 040279 229 VV 230 (626)
Q Consensus 229 ~~ 230 (626)
.+
T Consensus 137 ~~ 138 (146)
T PF03704_consen 137 ET 138 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.043 Score=51.84 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC--HhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 79 NLLFGAVAKNRHYDAVISFYRKLVSI-----GLLPD--FLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~--~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
..-...+.+.|+|..|..-|++++.. +..+. ...-...+.++-+++.++.+.+++..|++..+..+..+ ++|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNN 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCc
Confidence 33455778899999999988886542 11111 11112233333456667888888888888888888875 567
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCc-chHHHHHHHHhhC
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLV-DKAKELFLEMKGR 222 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 222 (626)
...+-.-..++...|+++.|+..|+++++.. |.|-.+-+-|+.+-.+.... +...++|..|...
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7788888888888888888888888888876 55655555565555444433 3346666666543
No 226
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.62 E-value=0.91 Score=45.57 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHH-hcCCHH
Q 040279 167 NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFC-CAGNWE 245 (626)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~ 245 (626)
+.+.+...+..++..- |.-..-|......-.+.|..+.+.++|++.... ++.+...|...+..+. ..|+.+
T Consensus 60 ~~~~~r~~y~~fL~ky-------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKY-------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHHHhhC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHH
Confidence 3344444555554332 222333444444444555555555555555542 3444444444443322 334555
Q ss_pred HHHHHHHHHHHC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 246 EVNGLFIEMLDL-GPR-PNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 246 ~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
...+.|+..... |.. .+...|...+..-..++++.....+++++++
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 555555554432 110 1223444455544555555555555555554
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.032 Score=46.44 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
+...++..+...|++++|..+++.++. +.| +...+..++.+|...|+..+|.+.|+++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA----LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344555666677777777777777777 666 4566777777777777777777777776543
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.59 E-value=0.095 Score=50.90 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=55.0
Q ss_pred CCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 34 VSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPI--SSFNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
.|.....++.+-..+...| ++++|+..|++.++..|.... .+|+.++.+|...|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lG--ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKG--RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445566777777777766 999999999999988776321 46899999999999999999999999864
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.56 E-value=0.79 Score=44.13 Aligned_cols=458 Identities=12% Similarity=0.090 Sum_probs=219.7
Q ss_pred cCCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh
Q 040279 33 AVSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLT 112 (626)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 112 (626)
.-|..-.++.+++.-+-..+ .+++.++.++++...-|. -..+|...+.+-...++++....+|.+.++..+ +...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~--s~~~~re~yeq~~~pfp~-~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldL 111 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQE--SMDAEREMYEQLSSPFPI-MEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDL 111 (660)
T ss_pred cCchhHHHHHHHHHHHhhhh--hHHHHHHHHHHhcCCCcc-ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhH
Confidence 34555566777887777766 899999999999653222 345788888888888999999999999998744 4555
Q ss_pred HHHHHHhhh---hhhhhhhhcCCHHHHHHHHHHHHH-CCCCC-CHhHHHHHHHHHH---------hcCChHHHHHHHHHH
Q 040279 113 LNILINCFG---NKERGLCVENRIKEATWLFKNMIA-FGVRP-DVITYGTLINGFC---------RTGNLSVALRLHKKM 178 (626)
Q Consensus 113 ~~~ll~~~~---~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~ 178 (626)
|...|.-.. .++.+ +. -..-.+.|+-... .++.| ....|+..+..+- .+.+++.....+.++
T Consensus 112 W~lYl~YIRr~n~~~tG---q~-r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 112 WMLYLEYIRRVNNLITG---QK-RFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred HHHHHHHHHhhCccccc---ch-hhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 555543221 11111 11 1122233343333 23333 3345555544332 233455667777777
Q ss_pred HhCCCCCCccccccHHHHHHHHHHHHhc---C----CcchHHHHHHHHhh--CCCCC----CcchHHH-----------H
Q 040279 179 VSGDYENGLISKTNIFSYSIIIDSLCKE---G----LVDKAKELFLEMKG--RGINP----AVVVCTT-----------L 234 (626)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g----~~~~A~~~~~~~~~--~~~~~----~~~~~~~-----------l 234 (626)
+...+..-.....|-..|..=++-.... | -+-.|...++++.. .|... +..+++. .
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 7543100000000111111111111111 1 12345555555432 12211 1112221 1
Q ss_pred HHHHHhcC-----C-H-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040279 235 IHGFCCAG-----N-W-EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDG 307 (626)
Q Consensus 235 i~~~~~~~-----~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 307 (626)
|..-...| + . ....-+++..+.. +.-....|......+...++-+.|+...+.-... .|... ..+...
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~--~~lse~ 342 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT--MFLSEY 342 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh--eeHHHH
Confidence 11100000 0 0 0000111111111 1112222333333333444545555444332221 12211 112222
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK---ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
|...++.+.....|+...+. ...-...+..-+. .|+++...+++-+-.. .-...|...+....+....
T Consensus 343 yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred HhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhH
Confidence 33333333333333333221 0000000000000 1222222222111111 1234566667777777778
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 385 GYAQKLFDEMKLYN-VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 385 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
+.|..+|-++.+.+ +.+++..+++++..++ .|+...|..+|+-=... ++.+....+..+..+...++-..|..+|+.
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 88888888888877 5667778888887665 57778888888754433 133333445566667778888888888886
Q ss_pred cccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 464 LPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 464 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.+.+ +..+ ...|..++.--..-|+...+..+-++|.+. -|...+.......|
T Consensus 492 sv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 492 SVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred hHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6553 2223 557788887777788888888877777763 44443333333333
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.041 Score=49.32 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHH
Q 040279 41 LNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL-NILI 117 (626)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~ll 117 (626)
.+.....+.+.| ++.+|.+.|...+...|.. ...++.=|+..+..+|++++|..+|..+.+. .|+.... ..++
T Consensus 144 ~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSG--DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHH
Confidence 555555566666 7888888888888876641 2334555788888888888888888888765 4544333 3333
Q ss_pred HhhhhhhhhhhhcCCHHHHHHHHHHHHHC
Q 040279 118 NCFGNKERGLCVENRIKEATWLFKNMIAF 146 (626)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 146 (626)
. ++....+.|+.++|..+|+++.+.
T Consensus 220 K----lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 K----LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred H----HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 345666777888888888887776
No 231
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.50 E-value=0.8 Score=43.53 Aligned_cols=108 Identities=21% Similarity=0.237 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (626)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778899888888877774 57888999999999999999887775432 224467888899999
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 450 KAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.|+..+|..+..++. + ..-+..|.+.|++.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988832 1 345677889999988877533
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.22 Score=49.93 Aligned_cols=201 Identities=16% Similarity=0.085 Sum_probs=107.7
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHH
Q 040279 352 AMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN-----ILIDGLCKNNCVQEAVKLF 426 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~ 426 (626)
.+.-++++.+.|-.|+... +...++-.|++.+|.++|.+--..+-. ...|+ -..+-+...|..++-..+.
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 3344556666666566542 334455566777777666554221100 01111 1223334444444443333
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh------cccCCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 427 HMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK------LPQKGL---VPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.-.+. .-+..--......+...|+.++|..+.-+ +.+.+. ..+..+...+..-+.+...+.-|-++|.
T Consensus 694 RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 694 RKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 221110 00000112233445566666666554321 111111 1234555555555666677778888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH-----------HHHHHHHHHHccCCHhHHHH
Q 040279 498 YMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDT-----------TFSIVVDLLAKDEKYHECSA 566 (626)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~ 566 (626)
.|-+ ...++......++|.+|..+.++..+ +.||.. -|...-.+|.++|+-.||.+
T Consensus 772 k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe----~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 772 KMGD---------LKSLVQLHVETQRWDEAFALAEKHPE----FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred Hhcc---------HHHHhhheeecccchHhHhhhhhCcc----ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 7754 23456667788999999999988876 555432 24445567888999999999
Q ss_pred HHHHHH
Q 040279 567 VSKSSY 572 (626)
Q Consensus 567 ~~~~~~ 572 (626)
++++.-
T Consensus 839 vLeQLt 844 (1081)
T KOG1538|consen 839 VLEQLT 844 (1081)
T ss_pred HHHHhh
Confidence 998874
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.43 E-value=0.11 Score=41.83 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred ChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 37 PETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
++..+..-.....+.| ++++|.+.|+.+....|.. ...+...++.++.++|++++|+..+++.++.........+.
T Consensus 9 ~~~~ly~~a~~~l~~~--~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKG--NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4455666666666666 9999999999999877652 34567778999999999999999999999874433334444
Q ss_pred HHH
Q 040279 115 ILI 117 (626)
Q Consensus 115 ~ll 117 (626)
..+
T Consensus 87 ~Y~ 89 (142)
T PF13512_consen 87 YYM 89 (142)
T ss_pred HHH
Confidence 443
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=96.40 E-value=0.51 Score=46.13 Aligned_cols=174 Identities=9% Similarity=-0.020 Sum_probs=108.4
Q ss_pred CCCCH---hhH--HHHHHHHHh-----cCChhHHHHHHHHHH-HCCCCCCHhhHHHHHHhhhhh--hhhh-hhcCCHHHH
Q 040279 71 PSPPI---SSF--NLLFGAVAK-----NRHYDAVISFYRKLV-SIGLLPDFLTLNILINCFGNK--ERGL-CVENRIKEA 136 (626)
Q Consensus 71 ~~~~~---~~~--~~l~~~~~~-----~g~~~~A~~~~~~~~-~~g~~p~~~~~~~ll~~~~~l--~~~~-~~~~~~~~A 136 (626)
++.+. ..| ..++.+... ....+.|..+|.+.. +...+|+-...-..+.-|... ..++ ....+..+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 34455 667 666666554 223467888999988 223366654444444333210 1111 134566777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 137 TWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
..+-++..+.+ +.|..+...+..+..-.++++.|...|++....+ |....+|........-.|+.++|.+.+
T Consensus 324 ~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 324 LELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888876 5578888888888888888999999999988876 556666766667777788899999988
Q ss_pred HHHhhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 217 LEMKGRGIN-PAVVVCTTLIHGFCCAGNWEEVNGLFIE 253 (626)
Q Consensus 217 ~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 253 (626)
++..+.+.. ....+....+..|+.. ..++|+.++-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 887665311 1112222233344433 35666665543
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.40 E-value=0.12 Score=40.25 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|++.|.+.+..-|. ...+||.-.+++.-+|+.++|+.=+++.++..-.-.. +.-.+|...+..|...|+-
T Consensus 57 g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr----tacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR----TACQAFVQRGLLYRLLGND 131 (175)
T ss_pred cchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHHHHhCch
Confidence 5999999999999988766 7889999999999999999999999998865221111 1222333345677888999
Q ss_pred HHHHHHHHHHHHCC
Q 040279 134 KEATWLFKNMIAFG 147 (626)
Q Consensus 134 ~~A~~~~~~~~~~~ 147 (626)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99999999988876
No 236
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.0058 Score=44.32 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
..+++.+...|...|++++|+..|++.++.....+...+....++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567888999999999999999999887541111110111255677777778888888888887776543
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.33 E-value=0.31 Score=47.60 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=75.1
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKTSKVVELL 531 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 531 (626)
+..+|.+..++..+.+ +-|......+..+....++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556777777777754 336777777777777777888888888888875 344 456666777777788888888888
Q ss_pred HHhhcCCCCCCCCH---HHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 532 HKMAEPERNLVPDD---TTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 532 ~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+++.+ +.|.. ......++.|...+ +++|.++|-+
T Consensus 396 ~~alr----LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQ----LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHhc----cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 88877 66743 23334444555554 6777776644
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.32 E-value=0.13 Score=42.33 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (626)
.++..+...+.......+++.+...+. .+....+.++..|++.+ ..+.++.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444455556666666666555442 34555566666665542 2333333332 112233444566666666
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHcc-CCHhHHHHHHHHHHhhccccccccCCchhhhhhhh
Q 040279 523 KTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKD-EKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCT 593 (626)
Q Consensus 523 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 593 (626)
.++++..++.++.. +...+..+... ++.+.|.+++++. .+|+.|..++..+
T Consensus 84 l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~~---------~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVKQ---------NNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHhC---------CCHHHHHHHHHHH
Confidence 66666666666543 22222222222 6666666666653 2555565555544
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.27 E-value=0.021 Score=55.25 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=70.8
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
.+...|+.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++ +. ..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe----ls--n~ 144 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR----DY--NL 144 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hc--ch
Confidence 44778999999999999999999999999985 5664 3589999999999999999999999998 31 11
Q ss_pred HHHHHHH--HHHccCCHhHHHHHHHHHHhhcc
Q 040279 547 TFSIVVD--LLAKDEKYHECSAVSKSSYRACL 576 (626)
Q Consensus 547 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 576 (626)
.|..+.. .+..-.+..+..++++.+.+.+.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2321111 12223344566667776655443
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.22 E-value=0.31 Score=49.34 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhh------HHHHHHHHH----hcCChhHHHHHHHHHHHCCCC
Q 040279 38 ETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISS------FNLLFGAVA----KNRHYDAVISFYRKLVSIGLL 107 (626)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~ 107 (626)
|+.+..++....-.| |-+.+++.+.+..+.+.-..+.+ |+..+..+. ...+.+.|..+++.+.+. .
T Consensus 188 Pp~~~kll~~vGF~g--dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y 263 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSG--DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y 263 (468)
T ss_pred CHHHHHHHhhcCcCC--cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C
Confidence 334555666666665 89999999998866443333332 333333333 245668899999999987 8
Q ss_pred CCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC--C-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 040279 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG--V-RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYE 184 (626)
Q Consensus 108 p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 184 (626)
|+...|...- ++.+...|++++|++.|++..... . +.....+--+.-.+.-.++|++|...|..+.+.+
T Consensus 264 P~s~lfl~~~------gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-- 335 (468)
T PF10300_consen 264 PNSALFLFFE------GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-- 335 (468)
T ss_pred CCcHHHHHHH------HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--
Confidence 9988887765 467888999999999999866421 1 1122234445666778899999999999999865
Q ss_pred CCccccccHHHHHHHH-HHHHhcCCc-------chHHHHHHHHhh
Q 040279 185 NGLISKTNIFSYSIII-DSLCKEGLV-------DKAKELFLEMKG 221 (626)
Q Consensus 185 ~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 221 (626)
.-+...|.-+. .++...|+. ++|.++|.+...
T Consensus 336 -----~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 336 -----KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred -----ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33444444443 344556776 666677666543
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.085 Score=47.36 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSI 550 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ 550 (626)
.|+.-+. +.+.|++..|...|...++.. +-+ ...+-+|+.++...|++++|..+|..+.+ .++-.| -++.+..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k-~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK-DYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH-hCCCCCCChHHHHH
Confidence 4555443 456677888888888888862 222 34566788888889999999888888887 333344 3578888
Q ss_pred HHHHHHccCCHhHHHHHHHHHH
Q 040279 551 VVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
|+.+..+.|+.++|...+++..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 8888889999999999988875
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.17 E-value=0.072 Score=42.46 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=51.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGD---------YENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
|..++..++.++++.|+.+....+.+..-..+ ..++....|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45678899999999999999999988765433 122233445555555555555555555555555555443
Q ss_pred C-CCCCCcchHHHHHH
Q 040279 222 R-GINPAVVVCTTLIH 236 (626)
Q Consensus 222 ~-~~~~~~~~~~~li~ 236 (626)
. +++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 3 33334444444444
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.14 E-value=1.4 Score=42.65 Aligned_cols=455 Identities=14% Similarity=0.129 Sum_probs=235.6
Q ss_pred CCHHHHHHHHHHhHhcCCC-CC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhh
Q 040279 54 INLNEARYFFGYMTHMQPS-PP----ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLC 128 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~ 128 (626)
+++.+|..+|.++...--. |. ...-+.+++++... +.+.-........+. .| ...|-.+..+. ...
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L-----~~Y 90 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKAL-----VAY 90 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHH-----HHH
Confidence 5899999999988653221 11 22345566776543 444444444444432 23 23333333321 346
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHH
Q 040279 129 VENRIKEATWLFKNMIAF--GVRP------------DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
+++.+.+|++.+...... +-.+ |-..-+..+..+...|++.++..+++++...-+... ..-+..
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE--~~w~~d 168 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRE--CEWNSD 168 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhh--hcccHH
Confidence 788999999988877655 2111 111224456777899999999999998876431100 236777
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGR-GINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCL 273 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (626)
+|+.++-.+.+. .|-++++. ....-+.-| -++-.|.+.= ..++...-..+.|....+..++...
T Consensus 169 ~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyY-emilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 169 MYDRAVLMLSRS--------YFLELKESMSSDLYPDYY-EMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHHHhHH--------HHHHHHHhcccccChHHH-HHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHH
Confidence 888766665443 23333221 111111222 2333332211 1111110011233333333333332
Q ss_pred Hhc--CCHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhc
Q 040279 274 CKG--GKINEANGLLELMIQRGLNPDRF-TYNSLMDGYCLVGRIDTAREIFLSMHSKGCK----HTVVSYNILINGYCKI 346 (626)
Q Consensus 274 ~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 346 (626)
.-. .+..--+++++.....-+.|+-. +...+...+.. +.+++..+.+.+....+. .-..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 11222233333333333444432 22333333333 455555554444332111 1244567777777778
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHH-------HHHHH----HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH---H
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTL-------LSGLF----QAGQAGYAQKLFDEMKLYNVEPDLS-TYNILI---D 411 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~ 411 (626)
++...|-+.+.-+.-. .|+...-..+ -+..+ ...+..+=+.+|+.....++ |.. ....++ .
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAK 387 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHH
Confidence 8888888777766653 2333221111 11111 01122233445555554432 221 112222 2
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHH----HHHHH---cCCHHHHHHHHHhcccCCCCCCH----hHHHHH
Q 040279 412 GLCKNNC-VQEAVKLFHMLEMNKFEFGIEIFNCLI----DGLCK---AGRLDNAWELFHKLPQKGLVPTV----VTYSIM 479 (626)
Q Consensus 412 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l 479 (626)
-+-+.|. -++|+.+++.+..-. +-|...-|.+. ..|.. ...+..-..+-+-+.+.|++|-. ..-|.|
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 2334454 788999998887543 33443333222 23322 22344444444445556766543 334444
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 480 IHG--LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 480 ~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
..+ +..+|++.++.-.-..+.+ +.|++.+|..++-+.....++++|..++..+ +|+..++..
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-------P~n~~~~ds 530 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-------PPNERMRDS 530 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-------CCchhhHHH
Confidence 443 4568999999887777777 6899999999999999999999999999875 566666554
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.08 E-value=1.1 Score=40.70 Aligned_cols=198 Identities=18% Similarity=0.059 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH-
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLY-NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID- 446 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 446 (626)
.........+...+....+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 33444444555555555555555554431 112233344444444555555566666665555432221 111111222
Q ss_pred HHHHcCCHHHHHHHHHhcccCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGL--VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP-NVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 523 (626)
.+...|+++.|...+++...... ......+......+...++.+.+...+.+..... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45666666666666666644211 0122233333333556667777777777776642 22 34566666666667777
Q ss_pred HHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 524 TSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 524 ~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++.+...+..... ..|+ ...+..+...+...|.++++...+++..
T Consensus 218 ~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALE----LDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHh----hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777766 4444 3444455555445666777777776664
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.06 E-value=0.21 Score=39.89 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=38.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 040279 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-GCAPNVVTFNTLMHGF 518 (626)
Q Consensus 468 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 518 (626)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35577888888888888888888888888887654 6666777787777643
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.05 E-value=0.35 Score=45.05 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHhHhcCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 55 NLNEARYFFGYMTHMQP--SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
+...|+..+...+..-. .....++..+..+..++|.+++++..--..+.. ..+...-.....+|.++.+++.+.-+
T Consensus 21 ~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~--a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 21 QTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT--ARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778777776654321 122346777888888999888876433222211 11112223334455556677777777
Q ss_pred HHHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 133 IKEATWLFKNMIAF-GVRP---DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 133 ~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
+.+++.+-..-... |..| .......+..++.-.+.++++++.|+.+.+..-+.+. ......++..|...|.+..+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHh
Confidence 77777776665543 1111 1223445677777788889999988887653311111 12334567777777777777
Q ss_pred cchHHHHHHHH
Q 040279 209 VDKAKELFLEM 219 (626)
Q Consensus 209 ~~~A~~~~~~~ 219 (626)
+++|.-...+.
T Consensus 178 ~~Kal~f~~kA 188 (518)
T KOG1941|consen 178 YEKALFFPCKA 188 (518)
T ss_pred hhHHhhhhHhH
Confidence 77776555444
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.92 E-value=1.2 Score=39.90 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRG--INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
+..-.+.|++++|.+.|+.+.... -+-...+...++-++.+.+++++|+..+++....-+......|...|.+.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 334456677777777777776552 111233444556666777777777777777776544433344544444443
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=1.2 Score=39.33 Aligned_cols=198 Identities=11% Similarity=0.002 Sum_probs=92.1
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
..+|....++++|...+.+..+. ...+...|. - ...++.|.-+.+++...+ .-+..|..-...|
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kls--------Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKLS--------EVVDLYEKASELY 101 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence 34566667777777766666532 121222221 1 222344444444444321 2234455556677
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCChhhHHHHHHHHHhcCC
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL---GP--RPNLLTFNVMIDCLCKGGK 278 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 278 (626)
..+|.++.|-..+++.-+. ..+.++++|+++|++.... +- ..-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7778877777777665432 2344566666666665431 10 0111233344455555566
Q ss_pred HHHHHHHHHHHHhcC----CCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChH
Q 040279 279 INEANGLLELMIQRG----LNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHSKG---CKHTVVSYNILINGYCKILNVE 350 (626)
Q Consensus 279 ~~~a~~~~~~~~~~~----~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 350 (626)
+++|-..+.+-.... --++. ..|...|-.+.-..|+..|.+.++.-.+.+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 655544433321110 01111 123333444444556666666666543321 1123344444555442 34444
Q ss_pred HHHH
Q 040279 351 EAMS 354 (626)
Q Consensus 351 ~A~~ 354 (626)
.+..
T Consensus 245 ~~~k 248 (308)
T KOG1585|consen 245 EIKK 248 (308)
T ss_pred HHHH
Confidence 4433
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=1.2 Score=39.22 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYC 309 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 309 (626)
.|.....+|....++++|...+.+..+. .+.+...|. ....+++|.-+.+++.+. .--...|.-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4444555666777777777776666531 121222111 122334444444444443 111233445556677
Q ss_pred hcCChHHHHHHHHHHH
Q 040279 310 LVGRIDTAREIFLSMH 325 (626)
Q Consensus 310 ~~g~~~~a~~~~~~~~ 325 (626)
.+|.++.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 7777766666555543
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.75 E-value=0.3 Score=49.47 Aligned_cols=135 Identities=17% Similarity=0.167 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh----cCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 156 GTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK----EGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
..++....=.||-+.+++.+.+..+.+.-.+.....-.-.|+..+..++. ....+.|.++++.+.++ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555678889999988887664311110001111223333333333 23456677777777765 4555554
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 232 TTL-IHGFCCAGNWEEVNGLFIEMLDLGP---RPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 232 ~~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
... .+.+...|+.++|++.|++...... +.....+-.++-.+.-..++++|...|..+.+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 433 3445566777777777776543111 111222333444455566666666666666654
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=1.2 Score=40.58 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=85.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.-.......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-|.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34455667888999999998888776 45566777788888889999999988888765421111111111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCC
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL-NPDRFTYNSLMDGYCLVGR 313 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~ 313 (626)
.+.+.....+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+++. .-|...-..++..+...|.
T Consensus 212 ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333333333333332221 11555556666777777777777766655554421 1234445555555555553
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.69 E-value=0.38 Score=38.83 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=60.9
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCC
Q 040279 71 PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRP 150 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (626)
|..+...+..-+....+.|+|++|+..|+.+...-.. +..+-..-|. ++.+|.+.+++++|...+++.++.....
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~----l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLD----LAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHH----HHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 4445566666777888999999999999999876322 2223333332 4578999999999999999999985332
Q ss_pred CHhHHHHHHHHHH
Q 040279 151 DVITYGTLINGFC 163 (626)
Q Consensus 151 ~~~~~~~li~~~~ 163 (626)
...-|...+.+++
T Consensus 81 p~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 81 PNVDYAYYMRGLS 93 (142)
T ss_pred CCccHHHHHHHHH
Confidence 2334555555544
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=1.7 Score=39.74 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=91.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
.....|++.+|...|....... +-+......+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455677777777777766554 334556667777788888888888888777653111122222233444445455554
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+++...+.. |...-..++..+..-|.-+.+...+++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45544444442 33556666777777888888888887777776333332 445555666666666654444444444
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.56 E-value=2.1 Score=40.14 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 405 TYNILIDGLCKNNCVQ---EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
++..++.+|...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+++.+++.+|+.. +.-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 5566777777766554 4555666665432 334556656667777788889999999998875 2212334444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH-HH--HhcCC------HHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 482 GL---CRKGKLEKANDFLLYMEKNGCAPNVV-TFN-TLMH-GF--LQNNK------TSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 482 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~-~l~~-~~--~~~g~------~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
.+ ... ....|...+..+....+.|... ... .++. .+ .+.++ .+...+++....+ ..+.+.+..+
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~-~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH-SLGKQLSAEA 241 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH-HhcCCCCHHH
Confidence 43 333 3456666666665544455443 111 1111 11 12222 3344444553322 1112223322
Q ss_pred ---HHHH----HHHHHccCCHhHHHHHHHHHH
Q 040279 548 ---FSIV----VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 548 ---~~~l----~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...+ +....+++++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2233 334668999999999999764
No 255
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=4 Score=42.53 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINP---AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKG 276 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (626)
++.+.+.+.+++|+++.+..... .| -...+...|..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56667788888888887765543 33 2356778888888899999998888888764 566676666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 277 GKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 277 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
++...... -+.......+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 66543322 22222222455677777776665
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.41 E-value=0.35 Score=48.23 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
|++++.+..+.-.-. |.-+..-.+.++..+.+.|-.+.|+++-..-. .-+... .+.|+++
T Consensus 276 d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeLA-----------l~lg~L~ 335 (443)
T PF04053_consen 276 DFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRFELA-----------LQLGNLD 335 (443)
T ss_dssp -HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHHH-----------HHCT-HH
T ss_pred Chhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHhHHH-----------HhcCCHH
Confidence 799977776521111 22235668889999999999999988764322 233433 3578999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
.|.++.++. .+...|..|.....+.|+++-|.+.|++.. -+..|+-.|...|+.+.-.+
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHH
Confidence 998766543 367899999999999999999999999853 35677778888999988888
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
+.+....+| -++....++...|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888877765 3566667777788888888887654
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=2.1 Score=39.74 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=55.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 040279 346 ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL----STYNILIDGLCKNNCVQE 421 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 421 (626)
.|++.+|-..++++++. .|.|...++..-.+|...|+.+.-...++++... ..++. ..-..+..++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555544 3334444444445555555555555555554432 11222 122222233344555555
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
|.+.-++..+.+ +.|.....+....+...|+..++.++..+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555554443 344455555555555555555555555443
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.33 E-value=5.7 Score=43.67 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhH--HHHHHHHHHhcCC
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVT--YSIMIHGLCRKGK 488 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~ 488 (626)
+.+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -+... -..|+.-+..+++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333445555555555543321 122345556666666666666655431 12111 1345555666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.-+|-++..+.... | ...+..+++...+++|.++.....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 66666666665542 1 122333445556666666666554
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.31 E-value=1.3 Score=41.39 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=87.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC--CCCC---CHhHHHHH
Q 040279 84 AVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF--GVRP---DVITYGTL 158 (626)
Q Consensus 84 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l 158 (626)
-+..+.++++|+..|.+.+.+ ..|.... +..++.+..+.+..|.+++++..--..+.. .... --.+|..+
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~--l~~~~~R---f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEK--LSDLMGR---FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHH--HHHHHHH---HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888777653 1121111 223334556677777777765433222111 0011 12344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC-----CCCCcchHHH
Q 040279 159 INGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG-----INPAVVVCTT 233 (626)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~ 233 (626)
.+.+-+.-++.+++.+-..-........ -..-.....++..++...+.++++++.|+...+.. .-....++..
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~--~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRA--GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCc--ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 5666666666666666555443321100 01112333445666667777788888777765421 1112356777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 040279 234 LIHGFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~ 255 (626)
|...|.+..|+++|.-...+..
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHH
Confidence 7777777777777766655543
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.23 E-value=1.1 Score=35.34 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+.....+|+-+.-.+++..+.+.+ .+++..+..+..+|.+.|+..++.++++++-+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444445555555555555555555432 45555555555555556665555555555554
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.18 E-value=0.89 Score=45.45 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=82.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
-.++++++.++.+.-.-. ...+....+.++..+.+.|-++.|+.+-.. ..+ -.+...+.|+++.|.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALE 339 (443)
T ss_dssp HTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred HcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHH
Confidence 356666665555411100 001233456666666777777777665322 211 1233345677777766
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
+.++ ..+...|..|.+....+|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 5432 23566777777777777777777777777654 4455556666777766666666666554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
. ++....++.-.|+.++..+++.+.-
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 3444445555666666666665543
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.09 E-value=0.055 Score=33.79 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+..+...|.+.|++++|.+.++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.08 E-value=0.47 Score=37.13 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=52.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHHHccC
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLLAKDE 559 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 559 (626)
+....|+.+.|++.|.+.+.. .+.+...|+.-..++.-.|+.++|++-++++++. .|-... ...|..-+..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL-ag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALEL-AGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh-cCccchHHHHHHHHHHHHHHHhC
Confidence 455667777777777766664 2445666777777777777777777777776661 111111 123444455566677
Q ss_pred CHhHHHHHHHHH
Q 040279 560 KYHECSAVSKSS 571 (626)
Q Consensus 560 ~~~~A~~~~~~~ 571 (626)
+-+.|..-|+.+
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 777777777665
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.04 E-value=1.3 Score=34.83 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=69.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 346 ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKL 425 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 425 (626)
.|..++..++..+...+ .+..-+|.++--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHHH
Confidence 56666666666666554 23333444443333333334444444444321 111 122333333333
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 426 FHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
+-.+ ..+.+.+...++....+|+-|.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 79 ~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3211 123445566667777788888888887777642 246777777888888888888888888888877764
No 265
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.98 E-value=0.029 Score=32.60 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=28.0
Q ss_pred HHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 040279 63 FGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVI 95 (626)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 95 (626)
|+++++..|. ++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677777776 8999999999999999999986
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.92 E-value=0.09 Score=32.81 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHH
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIII 200 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (626)
.++..+...+...|++++|+++|+++++.. |.|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 357788899999999999999999999876 66676666554
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.82 E-value=12 Score=44.69 Aligned_cols=324 Identities=10% Similarity=0.016 Sum_probs=168.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.+..+-.+.+.+.+|.-.++.-...... .......+..+...|...+++|....+...-.. +...+ .-|-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHH
Confidence 4455667889999999999984211100 112234455666699999999998887765222 22233 3444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhH-HHHHHHHHhcCChH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTY-NSLMDGYCLVGRID 315 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~ 315 (626)
.....|+|..|...|+.+.+.++. ...+++-++......|.++......+-.... ..+....+ +.-+.+-.+.+++|
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchh
Confidence 567889999999999999986433 4667887887777888888877766555443 12222222 23334456778888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHH--HHHHHhcC--ChHHHHHHHHHHHHC--------CCCCC-hhhHHHHHHHHHHcC
Q 040279 316 TAREIFLSMHSKGCKHTVVSYNIL--INGYCKIL--NVEEAMSLYRQIISN--------GVRQT-VITYNTLLSGLFQAG 382 (626)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~ 382 (626)
.....+. .. +..+|... .....+.. +.-.-.+..+.+.+. +...+ ...|..++....-..
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7776655 21 33334333 22222221 111111122222211 00000 122233322221111
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHC----C-CCcCHHHHHHHHHHHHHcCCHH
Q 040279 383 QAGYAQKLFDEMK-LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHM-LEMN----K-FEFGIEIFNCLIDGLCKAGRLD 455 (626)
Q Consensus 383 ~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~----~-~~~~~~~~~~l~~~~~~~g~~~ 455 (626)
- +.-.+.+.... .....-+...|..-+..-....+..+-+--+++ +... + -..-...|....+...++|+++
T Consensus 1609 l-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 L-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred H-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1 00001110000 000000111111111111111111111111111 1111 1 1223567778888888899999
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG 503 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (626)
.|...+-++.+.+ -+..+-..+......|+-..|+.++++..+..
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9988877777654 23445566777888999999999999988653
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.73 E-value=0.29 Score=40.30 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhc
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNT-LMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
-.+.++.+++..++..+.- ++|....... -.+.+...|++.+|..+++.+.+
T Consensus 20 al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455666777777766665 3555443322 23455666777777777777655
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.68 E-value=0.029 Score=32.62 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=21.1
Q ss_pred HHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 531 LHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 531 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
|+++++ +.| +...|..++.+|...|++++|+
T Consensus 2 y~kAie----~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE----LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH----HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455555 566 4667777777777777777765
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.61 E-value=2.3 Score=35.43 Aligned_cols=125 Identities=9% Similarity=0.012 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHhHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 54 INLNEARYFFGYMTHMQPS-PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
+..++|+.-|..+.+.|.. ..+-............|+..+|+..|+++-.-...|....-..-+++ .-.+...|.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra----a~lLvD~gs 147 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA----AYLLVDNGS 147 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH----HHHHhcccc
Confidence 3799999999999876643 22334445666778999999999999999876556655522222222 125667899
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
+++.....+.+...+-+.....-..|.-+-.+.|++..|.+.|+.+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 99998888887766544445566788888899999999999999998744
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.58 E-value=5.3 Score=39.56 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLI 159 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 159 (626)
.++.--.+..+...-++.-.++++. .||-.+.-.++ +--......+|.++|++..+.| ...+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL--------AEEeA~Ti~Eae~l~rqAvkAg----E~~lg--- 235 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL--------AEEEASTIVEAEELLRQAVKAG----EASLG--- 235 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--------ccccccCHHHHHHHHHHHHHHH----HHhhc---
Confidence 3444456677777777777777754 45444433333 1223345778888888876653 11111
Q ss_pred HHH--HhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC-CCcchHHHHHH
Q 040279 160 NGF--CRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN-PAVVVCTTLIH 236 (626)
Q Consensus 160 ~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~ 236 (626)
... ...|. .++....++ ..+-..+-..+..+.-+.|+.++|.+.+.+|.+.... ....+...|+.
T Consensus 236 ~s~~~~~~g~------~~e~~~~Rd------t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie 303 (539)
T PF04184_consen 236 KSQFLQHHGH------FWEAWHRRD------TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIE 303 (539)
T ss_pred hhhhhhcccc------hhhhhhccc------cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHH
Confidence 100 01111 111111211 1222333345666777888888888888888765211 12346677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGP-RPNLLTFNVMI 270 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 270 (626)
++...+.+.++..++.+.-+... +.-..+|+..+
T Consensus 304 ~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 88888888888888888754322 22233565544
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.46 E-value=3 Score=36.18 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 264 LTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
.||--+...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.43 E-value=3.6 Score=37.05 Aligned_cols=199 Identities=19% Similarity=0.091 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIISN-GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID- 411 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 411 (626)
.........+...+++..+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555556666665555555431 122233444444555555555666666666665432222 111122222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCC
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKF--EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGK 488 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (626)
.+...|+++.|...+........ ......+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56667777777777776644221 1223333334444566777888888887777642 22 35667777777777888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 489 LEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
++.+...+...... .|+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888775 333 44555555555566678888888888877
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=1.7 Score=40.31 Aligned_cols=187 Identities=12% Similarity=0.095 Sum_probs=117.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHHcCCH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI----EIFNCLIDGLCKAGRL 454 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 454 (626)
...|+..+|...++++++. .+.|...+...=.+|...|+.+.-...++++... ..++. .+-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4467888888888888764 4667777777777888889888888888877743 12333 2233344455678899
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
++|++.-++..+.+ +.|.-.-.+....+...|+..++.++..+-... .+-. ...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999998888753 234555567777777888898888876655432 1211 12333444456667888999998
Q ss_pred HHHhhcCCCCCCC-CHHH---HHHHHHHHHccCCHhHHHHHHHHH
Q 040279 531 LHKMAEPERNLVP-DDTT---FSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 531 ~~~~~~~~~~~~p-~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
|..-+- ..+.. |... |.-+-....+...+.+-.++-+.+
T Consensus 270 yD~ei~--k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIW--KRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHH--HHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 887544 22333 3322 222333444555555555444444
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.26 E-value=0.26 Score=39.81 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=24.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNVVTF-NTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.++.+++..++..|.- +.|+..-. ..-.+.+...|++.+|..++++..+
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 4555555555555554 24443322 1223344555556666666555554
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=2.8 Score=34.92 Aligned_cols=51 Identities=8% Similarity=-0.031 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 519 LQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
...|.+++...-++.+.. .+-+-....-..|+-+-.+.|++.+|.++|+.+
T Consensus 143 vD~gsy~dV~srvepLa~--d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAG--DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred hccccHHHHHHHhhhccC--CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 345555555555554433 111112333444455555555555555555554
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.13 E-value=6.3 Score=39.09 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE-FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMI 480 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 480 (626)
..+-..+..++-+.|+.++|++.++++.+.... ....+...|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333345666667788999999999888754322 2345667788888888999998888888765322222 33455433
No 278
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.13 E-value=2.7 Score=34.44 Aligned_cols=43 Identities=9% Similarity=-0.019 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN 416 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (626)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44445555555555555555555443 23444555555555543
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.90 E-value=2.6 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=6.1
Q ss_pred hcCCHHHHHHHHHHH
Q 040279 240 CAGNWEEVNGLFIEM 254 (626)
Q Consensus 240 ~~~~~~~a~~~~~~~ 254 (626)
..|+|.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.81 E-value=0.67 Score=39.38 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=62.0
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPT-----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
-+.+.|++++|..-|.++++. +++. ...|..-..++.+.+.++.|+.-....++.+ +.....+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 466778888888888877774 2222 2345555667777788888888777777753 22333444445577777
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 522 NKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
.++++|++-|+++.+ ..|...
T Consensus 182 ek~eealeDyKki~E----~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE----SDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHH----hCcchH
Confidence 788888888888877 666543
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=4.4 Score=35.67 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred HHHHHHHc-CCHHHHHHHHHhccc--CCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HH
Q 040279 444 LIDGLCKA-GRLDNAWELFHKLPQ--KGLVPTV---VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN---TL 514 (626)
Q Consensus 444 l~~~~~~~-g~~~~A~~~~~~~~~--~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l 514 (626)
+...|... .++++|+..|+..-+ .|-..+. ..+......-+..+++.+|+.+|++.....+..+..-|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 556666666666544 1212121 123333334456789999999999998765444433332 12
Q ss_pred ---HHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHH---HHHHHHHH--ccCCHhHHHHHHHHH
Q 040279 515 ---MHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTF---SIVVDLLA--KDEKYHECSAVSKSS 571 (626)
Q Consensus 515 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~---~~l~~~~~--~~g~~~~A~~~~~~~ 571 (626)
+-++.-..+.-.+...+++..+ +.|+ ..-+ ..|+.+.. ....+.++.+-|..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~----~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsi 262 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE----LDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSI 262 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh----cCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcc
Confidence 2223334666667777777766 5563 2222 23333332 123445555555554
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.77 E-value=1.7 Score=37.23 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH--H
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP-NVVTFN--T 513 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~ 513 (626)
..+..+...|.+.|+.++|.+.|.++.+....+. ...+..+++.....+++..+.....++...-..+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566777778888888888888888777533333 4456677777778888888888777765431111 121111 1
Q ss_pred H--HHHHHhcCCHHHHHHHHHHhhc
Q 040279 514 L--MHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 514 l--~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
. +-.+...+++.+|.+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1234567888888888777654
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.34 E-value=1.6 Score=37.48 Aligned_cols=101 Identities=11% Similarity=-0.047 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCC-CHhH
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRP-DVIT 154 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 154 (626)
..+..++..|.+.|+.+.|++.|.++..... +....+.+|-.+++.....+++..+.....+....-... |...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 4788999999999999999999999986533 333344444456678888899999998888776542121 2222
Q ss_pred HHHH----HHHHHhcCChHHHHHHHHHHHhC
Q 040279 155 YGTL----INGFCRTGNLSVALRLHKKMVSG 181 (626)
Q Consensus 155 ~~~l----i~~~~~~g~~~~A~~~~~~~~~~ 181 (626)
.+.+ .-.+...+++..|-+.|-.....
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2211 22334578999999988877543
No 284
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.34 E-value=1.1 Score=40.26 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhc----------------CChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKN----------------RHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
.++---..+..|.+-|...|..+|+.|+..+-+. .+-+.++.++++|..+|+.||..+-..+++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 4455555677778888888999999999876432 233578999999999999999999999987
Q ss_pred hhh
Q 040279 119 CFG 121 (626)
Q Consensus 119 ~~~ 121 (626)
+|+
T Consensus 167 ~FG 169 (406)
T KOG3941|consen 167 AFG 169 (406)
T ss_pred Hhc
Confidence 653
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.34 E-value=0.18 Score=29.72 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLV 102 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (626)
+|+.|+..+.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999965
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.18 E-value=1.1 Score=41.05 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc---CCCCCCCCHHHHHH
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE---PERNLVPDDTTFSI 550 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~p~~~~~~~ 550 (626)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ ...|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566777777777888888888877764 55677788888888888888888777777644 13567776666555
Q ss_pred HHHH
Q 040279 551 VVDL 554 (626)
Q Consensus 551 l~~~ 554 (626)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.05 E-value=0.21 Score=29.48 Aligned_cols=26 Identities=4% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++..|+.+|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999964
No 288
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.94 E-value=1 Score=38.37 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhc
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFG----IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRK 486 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 486 (626)
-+.+.|++++|..-|......-.+.. ...|..-..++.+.+.++.|+.--.+.++.+ |+ ...+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 35556677777776666665432211 1233333445566666666666666665542 22 22333334456666
Q ss_pred CCHHHHHHHHHHHHHC
Q 040279 487 GKLEKANDFLLYMEKN 502 (626)
Q Consensus 487 g~~~~A~~~~~~~~~~ 502 (626)
..+++|++-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6667777777666664
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.78 E-value=0.25 Score=28.57 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444444
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.74 E-value=0.25 Score=30.18 Aligned_cols=29 Identities=7% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
.++..++..|...|++++|.++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888887643
No 291
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.45 E-value=1.3 Score=39.88 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=26.5
Q ss_pred ChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 332 TVVSYNILINGYCK-----ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF 379 (626)
Q Consensus 332 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (626)
|..+|-..+..+.. .+..+-.-..++.|.+-|+..|..+|+.|+..+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 55555555555443 2344444455556666666666666666666543
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.44 E-value=0.34 Score=27.88 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+..++.++...|++++|.+.++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467788899999999999999999986
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.36 E-value=16 Score=38.22 Aligned_cols=178 Identities=14% Similarity=0.032 Sum_probs=106.4
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhc
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHG-----FCCAGNWEEVNGLFIEMLD-------LGPRPNLLTFNVMIDCLCKG 276 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 276 (626)
...|.+.++...+.| +...-..+..+ +....+.+.|+..|+...+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888876 34333333333 3356789999999998876 44 334566677777664
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----c
Q 040279 277 G-----KINEANGLLELMIQRGLNPDRFTYNSLMDGYCL-VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----I 346 (626)
Q Consensus 277 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 346 (626)
. +.+.|..++...-+.|. |+...+...+..... ..+...|.++|......| ....+-.+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 3 56778888888888763 344433322222222 245678888888888877 33344344444332 3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN 398 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (626)
.+...|..++.+..+.|.+ ....-...+..+.. ++++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 4678888888888887622 21111222223333 66666666666665544
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.30 E-value=16 Score=38.17 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhh-hhhcCCHHHHHHHHHHHHH-------CCCCCCHhHHHHHHHHH
Q 040279 91 YDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERG-LCVENRIKEATWLFKNMIA-------FGVRPDVITYGTLINGF 162 (626)
Q Consensus 91 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~ 162 (626)
...|...++...+.|..-.......+ + ..+ +....+.+.|+..|+.+.+ .+ +......+..+|
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~---y---~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGIC---Y---LAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHH---H---hhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 46788888888876432211111111 1 234 6678899999999999977 44 334566777777
Q ss_pred HhcC-----ChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh-cCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 163 CRTG-----NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK-EGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 163 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.+.. +.+.|..++.+....+ .++.......+..... ..+...|.+.|...-+.| .+..+-.+..
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~ 368 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLAL 368 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHH
Confidence 7643 6677999999988876 3444333222222222 245678999999988887 3333333333
Q ss_pred HHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 237 GFC----CAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 237 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
+|. ...+.+.|..++++..+.|. |...--...+..+.. +.++.+.-.+..+.+.|.+
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 332 23467888888888888762 222222222333333 6666666666666665543
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.15 E-value=1.3 Score=40.61 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD-----LGPRPNLLTFNVM 269 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 269 (626)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444444455555555555555554443 33444555555555555555555555544432 3455555444444
Q ss_pred HHH
Q 040279 270 IDC 272 (626)
Q Consensus 270 ~~~ 272 (626)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.14 E-value=0.3 Score=28.12 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+...+...|++++|++.++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666655
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=2.2 Score=42.91 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+++.|..++..+ | -..-+.++..+.++|-.++|+++- ..|+. -+... .+.|+++
T Consensus 601 d~~~a~~vLp~I----~---k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFela-----------l~lgrl~ 654 (794)
T KOG0276|consen 601 DLEVADGVLPTI----P---KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-RFELA-----------LKLGRLD 654 (794)
T ss_pred cccccccccccC----c---hhhhhhHHhHhhhccchHhhhhcC-------CChhh-hhhhh-----------hhcCcHH
Confidence 566665554443 1 234555666677777666665542 12322 22222 3467788
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
.|.++..+.. +..-|..|..+....|++..|.+.|.+... |..|+-.+...|+.+....
T Consensus 655 iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 655 IAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred HHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------------hhhhhhhhhhcCChhHHHH
Confidence 8877766543 566788888888888888888888877543 4456666667777665555
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
+-....+.| ..|....+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQG------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 555555544 2233445566778888887777554
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.83 E-value=20 Score=38.10 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHHC
Q 040279 198 IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGN-------WEEVNGLFIEMLDL 257 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~ 257 (626)
.++-.+.++|++++|.++..+.... .......+...+..|....+ -++...-|+...+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4667788999999999999665543 34455677777777766532 23445555555544
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.77 E-value=0.47 Score=27.35 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
.+|..++..+...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999999875
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.45 E-value=8.4 Score=33.05 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHc
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAK 557 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 557 (626)
...+...|++++|+.-++........-+. .+-..|.+.....|.+++|+..+..... .+. .......-++++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w--~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccH--HHHHHHHhhhHHHH
Confidence 34455666666666666666543111111 1112334455566667777666666554 111 22234445666666
Q ss_pred cCCHhHHHHHHHHHH
Q 040279 558 DEKYHECSAVSKSSY 572 (626)
Q Consensus 558 ~g~~~~A~~~~~~~~ 572 (626)
.|+.++|..-|++++
T Consensus 172 kg~k~~Ar~ay~kAl 186 (207)
T COG2976 172 KGDKQEARAAYEKAL 186 (207)
T ss_pred cCchHHHHHHHHHHH
Confidence 777777777776665
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.32 E-value=23 Score=37.78 Aligned_cols=434 Identities=12% Similarity=0.060 Sum_probs=215.4
Q ss_pred HHHHHHHHHHH-CCCCCC--HhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcc
Q 040279 135 EATWLFKNMIA-FGVRPD--VITYGTLINGFC-RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVD 210 (626)
Q Consensus 135 ~A~~~~~~~~~-~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (626)
.|++.++.+.+ ..++|. ..++..++..+. ...+++.|...+++.......++. ...-......++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-TDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHhcCHHH
Confidence 57777777773 334443 334556677776 678999999999988654411100 0111223345677777777766
Q ss_pred hHHHHHHHHhhCCCC----CCcchHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHH--HhcCCHH
Q 040279 211 KAKELFLEMKGRGIN----PAVVVCTTL-IHGFCCAGNWEEVNGLFIEMLDLG---PRPNLLTFNVMIDCL--CKGGKIN 280 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~ 280 (626)
|...+++..+.--. +-...+..+ +..+...+++..|.+.++.+...- ..|....+..++.+. ...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887654211 112222233 233333479999999998886542 223333444444443 3456567
Q ss_pred HHHHHHHHHHhcCC---------CCCHhhHHHHHHHH--HhcCChHHHHHHHHHHHhc---C-CC---------------
Q 040279 281 EANGLLELMIQRGL---------NPDRFTYNSLMDGY--CLVGRIDTAREIFLSMHSK---G-CK--------------- 330 (626)
Q Consensus 281 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~---~-~~--------------- 330 (626)
++.+.++.+..... .|-..++..+++.+ ...|+++.+...++++.+. . -.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 77777776643211 23445666666644 4667777777666555321 0 00
Q ss_pred -----------CChhhH---------HHHHHH--HHhcCChHHHHHHHHH-------HH-HCCCCCCh--------hhHH
Q 040279 331 -----------HTVVSY---------NILING--YCKILNVEEAMSLYRQ-------II-SNGVRQTV--------ITYN 372 (626)
Q Consensus 331 -----------~~~~~~---------~~l~~~--~~~~~~~~~A~~~~~~-------~~-~~~~~~~~--------~~~~ 372 (626)
+....| ..++.+ .+..+..++|.+++++ .. .....+.. ..|.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 001111 111221 2234444455555544 44 11111111 1121
Q ss_pred HHHH---------HHHHcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHHHH--HHHhcCCHHHHHHHHH--------
Q 040279 373 TLLS---------GLFQAGQAGYAQKLFDEMKLYNV-EPD-----LSTYNILID--GLCKNNCVQEAVKLFH-------- 427 (626)
Q Consensus 373 ~l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~A~~~~~-------- 427 (626)
..+. ...-.+++..+...++.+....- .|+ ...+...+. .+-..|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 1111 22356889999999998875311 111 122222222 3345799999999997
Q ss_pred HHHHCCCCcCHHHHHHH--HHHHHHc--CCHHH--HHHHHHhcccC-CCCC--CHhHHHHHH-HHHHhc--CCHHHHHHH
Q 040279 428 MLEMNKFEFGIEIFNCL--IDGLCKA--GRLDN--AWELFHKLPQK-GLVP--TVVTYSIMI-HGLCRK--GKLEKANDF 495 (626)
Q Consensus 428 ~~~~~~~~~~~~~~~~l--~~~~~~~--g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l~-~~~~~~--g~~~~A~~~ 495 (626)
.....+...+..++..+ +-.+... ...++ +.++++.+... .-.| +..++..++ .++... -...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 33344433344433321 1122222 22333 67777766542 1122 233444443 333211 112244444
Q ss_pred HHHHHHC---CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHH-----HHHHHHHccCCHh
Q 040279 496 LLYMEKN---GCAPNV---VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFS-----IVVDLLAKDEKYH 562 (626)
Q Consensus 496 ~~~~~~~---~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~-----~l~~~~~~~g~~~ 562 (626)
+.+..+. ....+. .+++.+...+. .|+..+..+........ ..-.|| ...|. .+.+.+...|+.+
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~-A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ 594 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQL-AKKSSDYSDQLWHLVASGMLADSYEVQGDRD 594 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHHHHHHcCcHH
Confidence 4333221 111121 23344444444 67777655554443320 001233 34453 3334477889999
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|....++..
T Consensus 595 ka~~~~~~~~ 604 (608)
T PF10345_consen 595 KAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHH
Confidence 9999888763
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.01 E-value=14 Score=34.83 Aligned_cols=128 Identities=9% Similarity=0.158 Sum_probs=58.0
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCC-
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCC--AG----NWEEVNGLFIEMLDLGPR---PNLLTFNVMIDCLCKGGK- 278 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 278 (626)
+++...+++.|.+.|...+..+|-+....... .. ...+|..+|+.|++..+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666677777766665555443222222 11 235566677777665321 233344444332 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCChhhHHH
Q 040279 279 ---INEANGLLELMIQRGLNPDR--FTYNSLMDGYCLVGR--IDTAREIFLSMHSKGCKHTVVSYNI 338 (626)
Q Consensus 279 ---~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (626)
.+.++.+|+.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 23445555555555544332 122222222111111 2345555555555555544444443
No 303
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.82 E-value=15 Score=34.71 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC-
Q 040279 279 INEANGLLELMIQRGLNPDRFTYNSLMDGYCL--VG----RIDTAREIFLSMHSKGC---KHTVVSYNILINGYCKILN- 348 (626)
Q Consensus 279 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 348 (626)
+++...+++.+.+.|+..+..+|.+....... .. ....|..+|+.|.+.-. .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677777777777666665543332222 11 24456677777766522 1223333333322 2222
Q ss_pred ---hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040279 349 ---VEEAMSLYRQIISNGVRQTV--ITYNTLLSGLFQAGQ--AGYAQKLFDEMKLYNVEPDLSTYNILI 410 (626)
Q Consensus 349 ---~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 410 (626)
.+.+..+|+.+.+.|...+- .....++........ ...+..+++.+.+.|++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34455566666665544332 222222222211111 235556666666666666555554433
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.49 E-value=1.5 Score=36.88 Aligned_cols=78 Identities=6% Similarity=0.044 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC-------HHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHc
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN---NK-------TSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAK 557 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~-------~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 557 (626)
++.|.+.++.....+ +.|...++....++... .. +++|+.=|++++. +.|+ ..++..++.+|..
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHH
Confidence 455566666544443 55666665555554433 22 3455556666666 8886 5778888888764
Q ss_pred c----CCHhHHHHHHHHH
Q 040279 558 D----EKYHECSAVSKSS 571 (626)
Q Consensus 558 ~----g~~~~A~~~~~~~ 571 (626)
. .+..+|.++|+++
T Consensus 82 ~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHH---HHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHH
Confidence 3 3344555555554
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.40 E-value=0.0028 Score=52.66 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 040279 442 NCLIDGLCK 450 (626)
Q Consensus 442 ~~l~~~~~~ 450 (626)
+.++..|++
T Consensus 46 ~~L~~ly~~ 54 (143)
T PF00637_consen 46 TLLLELYIK 54 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 333333333
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.28 E-value=15 Score=33.80 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRK 100 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (626)
...|+++|..++....+ ..+-+.++.++....+...|...+..
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHH
Confidence 46799999988775443 24445677788888887777766554
No 307
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.20 E-value=2.2 Score=39.67 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=44.6
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS 525 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (626)
-|.++|.+++|+..|...... .| |..++..-..+|.+.+.+..|+.-....+..+ +.-...|..-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 455666666666666665553 23 55556566666666666666555555554421 111122333333333345555
Q ss_pred HHHHHHHHhhc
Q 040279 526 KVVELLHKMAE 536 (626)
Q Consensus 526 ~a~~~~~~~~~ 536 (626)
+|.+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555555555
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.03 E-value=21 Score=35.22 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=106.4
Q ss_pred CccccccccccccccccccccccccCccccccCCCCh---hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhH
Q 040279 2 ASRTQFRCLFSSETVSKVKLSSLFKSPRQIAAVSSPE---TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSF 78 (626)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 78 (626)
|.|.+++|.-+-+..+...--++..+.+-....-+|. ....+.+..+.+..-+.+++.. ....|...--
T Consensus 221 AaR~dVp~vDPt~Lm~dwGQaRaLe~~GlDltHYTP~Fa~~iv~~~fkg~in~~~~~~d~~~--------q~~~~~~~~~ 292 (831)
T PRK15180 221 AARMDIPCVNPTNLMEKWGQKRALEKNGDDLTHYTDMFGDAIVAAIFKGVINNTNHHLDEGR--------QEKQDQIREI 292 (831)
T ss_pred HhcCCCcccCchhhhcccchhhcccCCCCCcccCChHHHHHHHHHHHhcccCCccccccccc--------CcCCcchhHH
Confidence 4568888888777666655555554433332222221 1112222333332111112111 0011122212
Q ss_pred HHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 79 NLLFGAVAKNRHYDAVI-SFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 79 ~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
..-+.--...|+...|- +++..+....-.|+....-+ ..+...|+++.+.+.+...... +.....+...
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~---------~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~ 362 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS---------VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRC 362 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH---------HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHH
Confidence 22233334567777665 44444443322343332222 3456779999999888776543 3445667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG 223 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 223 (626)
+++...+.|++++|..+-+.|+....+ ++..........-..|-++++.-.++++...+
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie-------~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIE-------DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccC-------ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888999999999999999999876632 23232222233344577888888888877654
No 309
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.50 E-value=32 Score=36.59 Aligned_cols=71 Identities=6% Similarity=-0.003 Sum_probs=38.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG 147 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 147 (626)
...| .++-.+.|.|.+++|.++...... +.......+...+..|..--..-.....-++...-|++..+..
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3456 466788999999999999955443 2344455666666654321111112223345566666666553
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.16 E-value=4.7 Score=34.84 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=52.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CCCHHHHHHHHHHHHccCCHh
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL-VPDDTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 562 (626)
.+.|+ ++|.+.|-++...+.--++.....|.. |....+.++++.++.++.+....- .+|++.+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 677777777776664444444444444 444667788888888777633333 567888888888888888887
Q ss_pred HHH
Q 040279 563 ECS 565 (626)
Q Consensus 563 ~A~ 565 (626)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.08 E-value=23 Score=34.48 Aligned_cols=65 Identities=20% Similarity=0.062 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP---TVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
...++..+...+.+.|+++.|...+.++...+... .+.....-+......|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666677777777777777777666532111 233334445556666777777777666665
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.73 E-value=0.62 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
+..++.++.+.|++++|+..|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666777778888888888887765
No 313
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.66 E-value=16 Score=31.98 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 040279 242 GNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIF 321 (626)
Q Consensus 242 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 321 (626)
|-+.-|.--|.+.+...+. -+..||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-+. +.-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 3344444444444443222 344677777777777777777777777776643222222222222 23346777777666
Q ss_pred HHHHhc
Q 040279 322 LSMHSK 327 (626)
Q Consensus 322 ~~~~~~ 327 (626)
...-+.
T Consensus 157 ~~fYQ~ 162 (297)
T COG4785 157 LAFYQD 162 (297)
T ss_pred HHHHhc
Confidence 665554
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.34 E-value=14 Score=31.09 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCH
Q 040279 254 MLDLGPRPNLLTFNVMIDCLCKGGKI 279 (626)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 279 (626)
+.+.+++|+...+..+++.+.+.|++
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33444444444555555555555443
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.88 E-value=0.92 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+..++.++.+.|++++|.+.++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45677888889999999999999986
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.65 E-value=14 Score=30.20 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=7.6
Q ss_pred HhcCCcchHHHHHHHHhh
Q 040279 204 CKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~ 221 (626)
...|++++|..+|+++.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 334444444444444443
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.61 E-value=43 Score=35.74 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhHh-cCCCC--CHhhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcC
Q 040279 56 LNEARYFFGYMTH-MQPSP--PISSFNLLFGAVA-KNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVEN 131 (626)
Q Consensus 56 ~~~A~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~ 131 (626)
..-|++.++-+.. ..++| ...++..++..+. ...+++.|...+++....--.++-.... ..+-..+++.+.+.+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k--~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK--FRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH--HHHHHHHHHHHHhcC
Confidence 3456667776663 22333 3446777787776 7899999999999886543233222211 111112356667666
Q ss_pred CHHHHHHHHHHHHHCCCC----CCHhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH--
Q 040279 132 RIKEATWLFKNMIAFGVR----PDVITYGTL-INGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC-- 204 (626)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 204 (626)
... |...+++.++.--. +-...+..+ +..+...++...|.+.++.+....... ..+...++..++.+..
T Consensus 115 ~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l 190 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHL 190 (608)
T ss_pred HHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHh
Confidence 555 99999887764211 122233333 333334489999999999887643110 1344555555555544
Q ss_pred hcCCcchHHHHHHHHhhCCC---------CCCcchHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGI---------NPAVVVCTTLIHGF--CCAGNWEEVNGLFIEML 255 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~ 255 (626)
+.+..+++.+.++++..... .|...+|..++..+ ...|+++.+.+.++++.
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667778888877743211 23455666666654 46777777776665553
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.57 E-value=1.2 Score=25.51 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+|..++.+|...|++++|.+.|+++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888999999999999999886
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.40 E-value=30 Score=33.73 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEP---DLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (626)
..+|..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666667777777777777777766532111 223333334445556677777777666654
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.38 E-value=17 Score=30.73 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=71.7
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 137 TWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
.+..+.+.+.+++|+...+..++..+.+.|++.....+++--. ++++...-..|+.. .+....+.++=
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V---------i~DSk~lA~~LLs~---~~~~~~~~Ql~ 81 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV---------IPDSKPLACQLLSL---GNQYPPAYQLG 81 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc---------cCCcHHHHHHHHHh---HccChHHHHHH
Confidence 3455556667778888888888888888888776666655432 22333222222222 12333444444
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 217 LEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
-+|.++ =...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 82 lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 82 LDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444432 0113455666666777777777776664322 122233455555555555444444444443
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.30 E-value=18 Score=31.11 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTY-----SIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
+...+...|++++|..-++..... |....+ ..|.+.....|.+++|+..++.....++ .......-+..+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345577889999999888877653 222222 2455677888999999998888776432 222344456688
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 040279 519 LQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~ 536 (626)
...|+.++|+.-|++.+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 170 LAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHcCchHHHHHHHHHHHH
Confidence 899999999999999987
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.24 E-value=0.87 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555554
No 323
>PRK09687 putative lyase; Provisional
Probab=86.94 E-value=27 Score=32.72 Aligned_cols=135 Identities=14% Similarity=0.063 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG-RLDNAWELFHKLPQKGLVPTVVTYSIMI 480 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 480 (626)
+..+-...+.++.+.++ +++...+-.+.+ .++..+-...+.++...+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444555555554 233343333332 123333333333343322 12234444444443 23444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 040279 481 HGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDL 554 (626)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 554 (626)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.+ -.||..+-...+++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~----~~~d~~v~~~a~~a 276 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY----KFDDNEIITKAIDK 276 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh----hCCChhHHHHHHHH
Confidence 55555555 34444444444432 1 123445555555553 45555555554 23454444444433
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.76 E-value=6.4 Score=29.21 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
-++.+-++.+...++.|++....+.+.+|.+.+++..|.++|+.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555556666666666666777777777777777776655
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.69 E-value=1.7 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVS 103 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (626)
..+++.|+..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998864
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.54 E-value=2.2 Score=39.69 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=44.0
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
-++.|+++|.+++|+..|....... +-+.+++..-..+|.+..+|..|..=.+.++..+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD 161 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 4567888888888888888877652 3377788888888888888887777666665543
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.16 E-value=12 Score=28.09 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 386 YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666666777777777777777777777777777777766432 122225555544
No 328
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=23 Score=32.97 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK---FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVT 475 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 475 (626)
.+....+...++..-....+++.+...+-.+.... ..++.. -...++.+ -.-+.++++.++..=++.|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34444455555555555566777776665554321 011111 11222222 23466677877777777788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
++.++..+.+.+++.+|..+...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888887777666554
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.33 E-value=18 Score=32.22 Aligned_cols=116 Identities=12% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
..++.|+..+.+.+...|. .+..|..-+-.+.+..+|+.+..-..+.++. .||.+--...++ .++.....+
T Consensus 24 k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg------~~~l~s~~~ 94 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLG------QWLLQSKGY 94 (284)
T ss_pred hhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHH------HHHHhhccc
Confidence 3689999999998887655 3455666777888899999999888888876 788888887775 456777889
Q ss_pred HHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 134 KEATWLFKNMIAF----GVRPDVITYGTLINGFCRTGNLSVALRLHKKM 178 (626)
Q Consensus 134 ~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 178 (626)
+.|+..+.+.... .+.+....+..|..+--+.-...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999987443 24445556777766655555556666666554
No 330
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.12 E-value=44 Score=33.46 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=61.8
Q ss_pred HHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHH
Q 040279 60 RYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSI-GLLPDFLTLNILINCFGNKERGLCVENRIKEATW 138 (626)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~ 138 (626)
..+|+.+... ...|+..|...+..+-+.+.+.+.-.+|.+|+.. +..|+...+.+. .-|...-+++.|..
T Consensus 91 v~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~--------wefe~n~ni~saRa 161 (568)
T KOG2396|consen 91 VFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK--------WEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh--------hHHhhccchHHHHH
Confidence 3445555444 3349999999999988999999999999999865 334444444332 34555666999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHH
Q 040279 139 LFKNMIAFGVRPDVITYGTLI 159 (626)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~li 159 (626)
+|.+.++.+ +.++..|....
T Consensus 162 lflrgLR~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 162 LFLRGLRFN-PDSPKLWKEYF 181 (568)
T ss_pred HHHHHhhcC-CCChHHHHHHH
Confidence 999998874 33444444433
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.10 E-value=6.3 Score=36.38 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
-++++++.++..=...|+-||..+...+++.+.+.+++.+|..+.-.|.
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445555555555555666666666666666666666655555554443
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.61 E-value=74 Score=35.68 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 040279 264 LTFNVMIDCLCKGG--KINEANGLLELMIQ 291 (626)
Q Consensus 264 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 291 (626)
.....++..|.+.+ .++.++........
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34445666666665 55666655555543
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.20 E-value=12 Score=32.50 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=40.1
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN---GCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
+.|.+.|-.+...+.--++.....|+..|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555444444555555554444 34566666666665543 22455666666666666666666553
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.06 E-value=16 Score=27.55 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=20.6
Q ss_pred HHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 457 AWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 457 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++.+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555543
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=8 Score=34.27 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVV-TFNTLMHGFLQNNKTS 525 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 525 (626)
|.....++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+.+--.+..+ +.||.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 33444556666655555542 3444 3334455555556666666555555555 344443 2233334455555566
Q ss_pred HHHHHHHHhhcC--CCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 526 KVVELLHKMAEP--ERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 526 ~a~~~~~~~~~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+|+..+.++.+. ...++|.......|..+=.+.=...+..++.+.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 666666555321 122333344444444433333333344444444
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.94 E-value=1.6 Score=23.27 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=13.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHH
Q 040279 548 FSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
...++.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666666677777666654
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.61 E-value=54 Score=32.55 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 040279 159 INGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGF 238 (626)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (626)
|.-....|++-.|-+-+...++.. +.++.........+...|+++.+.+.+....+. +.....+...++...
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 444456777777766555555543 333333344445566779999998888766543 233456777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 239 CCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 239 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
.+.|++++|...-.-|+...++ +........-..-..|-++++...|+++...+.+
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8899999999998888876665 4444333333444567788888888888776533
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.13 E-value=3.1 Score=25.79 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIG 105 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g 105 (626)
.|+.+|...|+.+.|+.++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788888888888888888888654
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.87 E-value=9.6 Score=28.33 Aligned_cols=49 Identities=6% Similarity=-0.041 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555556666666666666666666666666666665553
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.83 E-value=40 Score=30.58 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLY-----NV------EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN-KFEFGI 438 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 438 (626)
-..+...|...+.+.+..++++++... |- ..-...|..-|+.|....+-.+-..++++.... .--|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345666666667777777776666431 10 111345666777777777777777777655422 112344
Q ss_pred HHHHHHH----HHHHHcCCHHHHHH-HHHh---cccCCCCCCHhH---HHHHHHHHHhcC----CHHHHHHHHHHHHHCC
Q 040279 439 EIFNCLI----DGLCKAGRLDNAWE-LFHK---LPQKGLVPTVVT---YSIMIHGLCRKG----KLEKANDFLLYMEKNG 503 (626)
Q Consensus 439 ~~~~~l~----~~~~~~g~~~~A~~-~~~~---~~~~~~~p~~~~---~~~l~~~~~~~g----~~~~A~~~~~~~~~~~ 503 (626)
.+...+- .+..+.|++++|-. +|+. .-+.|- |...+ |..|...+.+.| +..+|.. ..
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYLVLANMLmkS~iNPFDsQEAKP-------yK 299 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYLVLANMLMKSGINPFDSQEAKP-------YK 299 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHHHHHHHHHHcCCCCCcccccCC-------CC
Confidence 4333222 22456677777653 2332 233442 23222 444555555554 1112111 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 504 CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
-.|.....+.++.+|. .++..+-.++++.-.
T Consensus 300 NdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 300 NDPEILAMTNLVAAYQ-NNDIIEFERILKSNR 330 (440)
T ss_pred CCHHHHHHHHHHHHHh-cccHHHHHHHHHhhh
Confidence 1344456677777774 445555555555443
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.66 E-value=42 Score=34.38 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=60.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 040279 414 CKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKAN 493 (626)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 493 (626)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34567777766654432 445577777777777777777777776554 334555555666655555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 494 DFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+-....+.| +. |....+|...|+++++.+++.+-.+
T Consensus 713 ~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 713 VLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 5545555444 22 2223356667777777777666543
No 342
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.65 E-value=42 Score=33.43 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=26.2
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNW 244 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 244 (626)
.+.++..++.+..+...|.......++.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 456777777777777776655556666666666666643
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.45 E-value=11 Score=31.94 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhh
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRH-----------YDAVISFYRKLVSIGLLPDFLTLNILINCFGNKE 124 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~ 124 (626)
+++|+.-|++++...|. ...++..++.++...+. +++|...|++.... +|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH----
Confidence 56778888888887776 45666677777764332 56677777777766 89999999887642
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCC
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGV 148 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~ 148 (626)
.+|-+++.++.+.+.
T Consensus 124 ---------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ---------AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---------HTHHHHHHHHHHSSS
T ss_pred ---------HhhHHHHHHHHHHHh
Confidence 468888888887753
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.27 E-value=2.3 Score=22.70 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYR 99 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~ 99 (626)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567788888899888888876
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.15 E-value=87 Score=33.37 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=66.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRP---DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
+.+.+.+.+++|+..-+..... .| -...+..+|..+.-.|++++|-...-.|... +..-|..-+.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----------~~~eWe~~V~ 431 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----------NAAEWELWVF 431 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----------hHHHHHHHHH
Confidence 4556678888888877765543 33 2345677888888899999999988888643 3666776677
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC 240 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (626)
.+...++..... .-++......+...|..++..+..
T Consensus 432 ~f~e~~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 432 KFAELDQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred Hhccccccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 776666654432 233332222456678777777766
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.93 E-value=16 Score=32.06 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG--CAPNVVTFNTLMHG 517 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~ 517 (626)
.+..+..+.+.+.+++|+...++-++.. +.|..+-..++..++-.|++++|..-++-.-+.. ..+-..+|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667778889999998888777653 3356667778888999999999988877776631 12233456666554
No 347
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.92 E-value=63 Score=31.62 Aligned_cols=117 Identities=9% Similarity=0.039 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH-------CCC-----C-------------CC
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVS-------IGL-----L-------------PD 109 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~-----~-------------p~ 109 (626)
|.+.-..+++.. |. .+.++..+...+.++|+...|.+++++++- ... . -|
T Consensus 25 Dp~~l~~ll~~~----Py-HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eN 99 (360)
T PF04910_consen 25 DPNALINLLQKN----PY-HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPEN 99 (360)
T ss_pred CHHHHHHHHHHC----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccc
Confidence 666666665442 54 788999999999999999999888887641 111 0 02
Q ss_pred HhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 040279 110 FLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFC-RTGNLSVALRLHKKMVS 180 (626)
Q Consensus 110 ~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 180 (626)
...|.++. +.+..+.+.|-+..|.++.+-+...+..-|+......|..|+ +.++++--+++.+....
T Consensus 100 R~fflal~----r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 100 RQFFLALF----RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hHHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 22222222 345677788889999998888888865546666666777765 67788888888877654
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.42 E-value=11 Score=32.90 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.+..++.+.+.+++++|+...+.-++.. |.|...-..++..++-.|++++|..-++..-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3444556666666677776666666554 45555566666666666777666665555443
No 349
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.32 E-value=79 Score=31.80 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH-hcCCcchHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC-KEGLVDKAK 213 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 213 (626)
.-..+|+..... +..|...|...+..+-+.+.+.+...+|.+|+... |.++..|-....-.. ..-+++.|.
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-------p~~~dLWI~aA~wefe~n~ni~saR 160 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-------PNNPDLWIYAAKWEFEINLNIESAR 160 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-------CCCchhHHhhhhhHHhhccchHHHH
Confidence 445566666554 45588899999988888888999999999998875 445555544443333 334488899
Q ss_pred HHHHHHhhC
Q 040279 214 ELFLEMKGR 222 (626)
Q Consensus 214 ~~~~~~~~~ 222 (626)
.+|..-...
T Consensus 161 alflrgLR~ 169 (568)
T KOG2396|consen 161 ALFLRGLRF 169 (568)
T ss_pred HHHHHHhhc
Confidence 998887765
No 350
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.75 E-value=45 Score=33.25 Aligned_cols=107 Identities=15% Similarity=-0.044 Sum_probs=61.1
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCCCcCH-----HHHHHHHHHHHHcCCHHHHHHHHHhccc-------CCCCCCH----
Q 040279 413 LCKNNCVQEAVKLFHMLE---MNKFEFGI-----EIFNCLIDGLCKAGRLDNAWELFHKLPQ-------KGLVPTV---- 473 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~---~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~---- 473 (626)
+.-.|++.+|.+++...- ..|...++ ..+|.+...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 334577777777664322 11211121 1234555555556666666666655542 2433321
Q ss_pred ------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 474 ------VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 474 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
.......-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12233445677788888888888888765 46677888888887763
No 351
>PRK09687 putative lyase; Provisional
Probab=77.66 E-value=63 Score=30.31 Aligned_cols=201 Identities=13% Similarity=0.023 Sum_probs=103.5
Q ss_pred CHhhHHHHHHHHHhcCCh----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCCCC
Q 040279 297 DRFTYNSLMDGYCLVGRI----DTAREIFLSMHSKGCKHTVVSYNILINGYCKILN-----VEEAMSLYRQIISNGVRQT 367 (626)
Q Consensus 297 ~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~ 367 (626)
|...-...+.++...|+. +.+...+..+... .++..+-...+.++...+. ...+...+...... ++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CC
Confidence 444444444555555542 3455555544332 2344444444444443321 12233333333322 34
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN-CVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
..+-...+.++.+.++ ..+...+-.+.+ .++...-...+.++.+.+ ....+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4555555666666665 345555555554 344445555555555542 23345555554442 346666667777
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
++.+.|+. .|+..+-+..+.+ + .....+.++...|.. +|...+.++.+. .||..+-...+.++
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 77777774 4555555555432 2 234566777777774 688888887764 34666655555554
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.14 E-value=1.2e+02 Score=32.44 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=63.3
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040279 346 ILNVEEAMSLYRQIISNG-VRQTV--ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEA 422 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 422 (626)
..+.+.|..++....... ..+.. ..+..+.......+..+++...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445677888877764432 21111 222333323333322455666665544321 2333344444444577888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLP 465 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (626)
...+..|.... .....-.--+..++...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777765432 2233344456666667788888888888764
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.53 E-value=73 Score=29.50 Aligned_cols=72 Identities=15% Similarity=0.007 Sum_probs=31.7
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 144 IAFGVRPDVITYGTLINGFCRTGNLS-VALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 144 ~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
.+.+.+.+......++..+...+.-+ +-.++.+.+++-. ..+.....++.....+...|.+.|++.+|+.-|
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33455556555555555555443211 1222222222211 111113456677777778888888777776544
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.50 E-value=43 Score=30.76 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=24.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
|.+++..++|.+++...-+.-+..-+........-|-.|.+.+++..+.++-..-.+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344455555555554443333221111222233333444555555555554444443
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.78 E-value=20 Score=28.77 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHhhcCC-CCHHHHHHHHHHhHh-cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 040279 38 ETQLNEFLHENCKSGI-INLNEARYFFGYMTH-MQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNI 115 (626)
Q Consensus 38 ~~~~~~~l~~~~~~~~-~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 115 (626)
.++..++.-++.++.. .|..+-+.+++.+.+ ..|..+......|.-++.|.|+|+.++.+.+.+++. +||..-...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 3444445555554431 246777889999986 444445566667778899999999999999999977 666544443
Q ss_pred H
Q 040279 116 L 116 (626)
Q Consensus 116 l 116 (626)
+
T Consensus 110 L 110 (149)
T KOG3364|consen 110 L 110 (149)
T ss_pred H
Confidence 3
No 356
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.27 E-value=1.5e+02 Score=32.42 Aligned_cols=225 Identities=14% Similarity=0.077 Sum_probs=106.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHhc----CCCCCHhhHHHHHH
Q 040279 239 CCAGNWEEVNGLFIEMLDLGPRPNLL-------TFNVMI-DCLCKGGKINEANGLLELMIQR----GLNPDRFTYNSLMD 306 (626)
Q Consensus 239 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~ 306 (626)
....++.+|..++.+....-..|+.. .++.+- ......|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45677888888887775432222221 233322 2234567888888887776654 12233445555666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH-----HHHHhcCC--hHHHHHHHHHHHHCC---CC---CChhhHHH
Q 040279 307 GYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILI-----NGYCKILN--VEEAMSLYRQIISNG---VR---QTVITYNT 373 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~A~~~~~~~~~~~---~~---~~~~~~~~ 373 (626)
+..-.|+++.|..+..+..+..-..+...+..+. ..+...|+ ..+.+..+....... .+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777788888888777665542222333332222 22334553 222222332222210 01 11122333
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc----CHHHHHHHHH
Q 040279 374 LLSGLFQA-GQAGYAQKLFDEMKLYNVEPDLST--YNILIDGLCKNNCVQEAVKLFHMLEMNKFEF----GIEIFNCLID 446 (626)
Q Consensus 374 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~ 446 (626)
+..++.+. +...++..-++--......|-... +..++......|++++|...++++......+ +.......+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 33333331 111222222222222211222222 2255666777888888888887776432222 2111122222
Q ss_pred H--HHHcCCHHHHHHHHHh
Q 040279 447 G--LCKAGRLDNAWELFHK 463 (626)
Q Consensus 447 ~--~~~~g~~~~A~~~~~~ 463 (626)
. ....|+...+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2346777777666655
No 357
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=73.17 E-value=1.4e+02 Score=32.19 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=66.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 72 SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
..+...+..|+..+.+.|++++...--.+|...-..| ...|..-+... ......++..++..+|++.+.. .-+
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~----~~mt~s~~~~~v~~~~ekal~d--y~~ 182 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDE----LSMTQSEERKEVEELFEKALGD--YNS 182 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHH----HhhccCcchhHHHHHHHHHhcc--ccc
Confidence 3467788889999999999987776666666543333 34444333332 1233457888899999988765 334
Q ss_pred HhHHHHHHHHHH-------hcCChHHHHHHHHHHHhC
Q 040279 152 VITYGTLINGFC-------RTGNLSVALRLHKKMVSG 181 (626)
Q Consensus 152 ~~~~~~li~~~~-------~~g~~~~A~~~~~~~~~~ 181 (626)
+..|.-.+.-+. +.++++.-..+|++++..
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 445544444433 346788888888888754
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.13 E-value=6.5 Score=21.25 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
.+|..++..+...|+++.|...|++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677788888888999999888887754
No 359
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.10 E-value=2.3 Score=35.01 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFL 217 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (626)
++..+.+.+.+.....+++.+...+ ...+....+.++..|++.++.++..+.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~------~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN------KENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS------TC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc------cccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3444555555566666666655443 23445555666666666655555555544
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.07 E-value=6.4 Score=21.27 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=6.9
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 040279 517 GFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~ 534 (626)
.+...|++++|...++..
T Consensus 10 ~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 10 AYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 333333333333333333
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.79 E-value=9.5 Score=23.67 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666655555543
No 362
>PRK10941 hypothetical protein; Provisional
Probab=72.60 E-value=56 Score=30.32 Aligned_cols=78 Identities=9% Similarity=-0.034 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLL 555 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 555 (626)
.+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--+-.|.+.|.+..|..-++..++ .+.-.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~-~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE-QCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCchhHHHHHHHHHHH
Confidence 3455566777778888888887777753 34455566666677777888777777777765 122334444444444443
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.91 E-value=15 Score=26.21 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=7.6
Q ss_pred HHHHHHHccCCHhHHHHH
Q 040279 550 IVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~ 567 (626)
.++.+|...|++.+++++
T Consensus 48 ~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 48 YLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.90 E-value=74 Score=28.46 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=14.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 272 CLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
..+..+++.+|.++|+++-...+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556666777777766655433
No 365
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.85 E-value=15 Score=23.88 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
...++-++.+.|+++.|....+.+++. +|+......+-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 345667788999999999999988876 78776666554
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.32 E-value=88 Score=29.05 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=30.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
....|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.+.+-++++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445555666666666665555443 445555555566666666555555544444
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.93 E-value=36 Score=30.32 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHhhcCCC-CCCC-C-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 510 TFNTLMHGFLQNNKT-------SKVVELLHKMAEPER-NLVP-D-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+..+.+.|...|+. ..|.+.|+++.+.+. +..+ + ......++....+.|++++|.++|.++.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445556666666664 446666666654111 1122 2 3445567777888999999999999885
No 368
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.54 E-value=21 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=16.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 514 LMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
+.-++.+.|++++|.++.+.+++ +.|+..-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~----~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE----IEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH----HTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh----hCCCcHH
Confidence 33455566666666666666666 5565443
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.94 E-value=1.1e+02 Score=29.51 Aligned_cols=99 Identities=9% Similarity=-0.060 Sum_probs=61.1
Q ss_pred CCCHhHHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 149 RPDVITYGTLINGFCRTGN------------LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
+-|..+|..++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5578888877765543221 345567777777765 566677777777777777777777777
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 040279 217 LEMKGRGINPAVVVCTTLIHGFCC---AGNWEEVNGLFIEML 255 (626)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~ 255 (626)
+++.... +-+...|...+..... .-.++....+|.+.+
T Consensus 89 e~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 89 EELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 7777652 2255666666654433 223455555554443
No 370
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.90 E-value=1.6e+02 Score=31.57 Aligned_cols=205 Identities=9% Similarity=-0.059 Sum_probs=114.2
Q ss_pred hcCChHHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 040279 310 LVGRIDTAREIFLSMHSKG-CKHT--VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386 (626)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (626)
...+.+.|...+....... ..+. ...+..+.......+..+++...+....... .+......-+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3456788999998875543 2111 1223334333333333667777776654432 244445555666668999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+...+..|.... .....-.--+..++...|+.++|...|+.+... . ..|..+.. .+.|..-. +.. .
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~--~fYG~LAa--~~Lg~~~~----~~~-~- 396 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R--GFYPMVAA--QRLGEEYP----LKI-D- 396 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--CcHHHHHH--HHcCCCCC----CCC-C-
Confidence 999998885532 223344445667767789999999999987532 1 23333221 12232100 000 0
Q ss_pred CCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 467 KGLVPTV-----VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 467 ~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
..++.. ..-..-+..+...|+...|...+..+.+. .+......+.....+.|.++.++......
T Consensus 397 -~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 397 -KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred -CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 000000 01112344566778888888888887764 34445555555566777777776665543
No 371
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.85 E-value=89 Score=28.53 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS-KVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
..+=++.+.++.+.+ +.|...|..--......|++. .-+++.+.|+. +-.-+-..|..--+++..-+.++.-..+
T Consensus 94 L~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~---~DaKNYHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD---DDAKNYHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchHHHHHHHHh---ccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 333444444444432 334444433333333333443 34444444443 0011233344444444444445544444
Q ss_pred HHHHH
Q 040279 568 SKSSY 572 (626)
Q Consensus 568 ~~~~~ 572 (626)
..++.
T Consensus 170 ~~~Ll 174 (318)
T KOG0530|consen 170 ADELL 174 (318)
T ss_pred HHHHH
Confidence 44443
No 372
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.27 E-value=33 Score=32.28 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=38.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHH
Q 040279 481 HGLCRKGKLEKANDFLLYMEKNG---CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
.-|.+.+++..|...|.+-++.. -..+.+.|+.-..+-...|++..++.-...+.. ++|+ ...+..-+.++.
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~----~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK----LKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----cCcchhhhhhhhhHHHH
Confidence 33444555555555555544331 111223444444444444555555555555544 4443 233333444444
Q ss_pred ccCCHhHHHHHHHH
Q 040279 557 KDEKYHECSAVSKS 570 (626)
Q Consensus 557 ~~g~~~~A~~~~~~ 570 (626)
...++++|..+++.
T Consensus 165 eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 165 ELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHhh
Confidence 44454444444444
No 373
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.06 E-value=2.9e+02 Score=34.16 Aligned_cols=323 Identities=9% Similarity=-0.002 Sum_probs=159.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDLGP--RPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
.+..+-.+++.+.+|...++.-..... ......|..+...|...++++...-+...-.. +...+ .-+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455567777777777776311100 11122344455578888888877776654211 22222 23334556
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHHcCCHHHHHH
Q 040279 311 VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTL-LSGLFQAGQAGYAQK 389 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 389 (626)
.|++..|...|+.+.+.+. +....++-++......+.++..+...+-.... ..+....++.+ ..+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 7888888888888887742 23556666666666677777777766555543 22233333332 333456666666655
Q ss_pred HHHHHHhCCCCCCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHH--------CCCC-cCHHHHHHHHHHHHHcCCHHH
Q 040279 390 LFDEMKLYNVEPDLSTYNI--LIDGLCKNN--CVQEAVKLFHMLEM--------NKFE-FGIEIFNCLIDGLCKAGRLDN 456 (626)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g--~~~~A~~~~~~~~~--------~~~~-~~~~~~~~l~~~~~~~g~~~~ 456 (626)
... ... ..+|.. +.....+.. +.-.-...++.+.. .... .-...|..++....-. +.+.
T Consensus 1540 ~l~--~~n-----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1540 YLS--DRN-----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred hhh--ccc-----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence 544 111 111111 122221111 11111112211111 1111 1113344444433222 1122
Q ss_pred HHHHHHhccc-CCCCCCHhHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 040279 457 AWELFHKLPQ-KGLVPTVVTYSIMIHGLCRKGKLEKANDFL-LYMEKNGCAP-----NVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 457 A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
-.+.+..... ....-+...|..-+..-....+..+-+--+ +.+......| -..+|....+....+|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 2222222211 111112233333332211111222211111 1122211122 24688888888888999999999
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhcc
Q 040279 530 LLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRACL 576 (626)
Q Consensus 530 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 576 (626)
.+-++.+ .. -+..+...+..+...|+...|..+++..+....
T Consensus 1692 all~A~e--~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKE--SR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhh--cc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 8888877 22 345666777888999999999999999875433
No 374
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.37 E-value=58 Score=25.79 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=52.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 45 LHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 45 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
..-+.+.+ .|--+.++-++.+...+.-|++..-..-++++.|-+++..|+++|+-+... +.+....|..++
T Consensus 55 ~~yf~r~~-iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 55 EKYFNRPE-IDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHcCccc-chHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 33333344 467778888888888888899999999999999999999999999988743 122222455554
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.14 E-value=1.4e+02 Score=30.21 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=74.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
|...+.+++..+..+-...-...+..+++.-+ .+...|..++.+|... ..++-..+++++.+..+. |++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--------e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~ 134 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVI 134 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHH
Confidence 33444555555555555555555555555533 3445555556666555 445555555555554321 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHhhHHHH
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP--N---LLTFNVMIDCLCKGGKINEANGLLELMIQR-GLNPDRFTYNSL 304 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 304 (626)
-..|...|- .++-..+...|.++...-++. + ...|..+... -..+.+...++...+... |...-...+..+
T Consensus 135 ~ReLa~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 135 GRELADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 233333332 255555555555554331110 0 1122222221 123444444444444332 222222333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 040279 305 MDGYCLVGRIDTAREIFLSMHSK 327 (626)
Q Consensus 305 l~~~~~~g~~~~a~~~~~~~~~~ 327 (626)
-.-|....++++|++++..+.++
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhh
Confidence 44455555566666666655554
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.65 E-value=9.9 Score=27.05 Aligned_cols=56 Identities=5% Similarity=-0.008 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPN--VVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.+..| ...+.++|+..|....+.-..+. ..++..++.+|...|++++++++.-.-+
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445 67788999999999988632222 2467778889999999998888755443
No 377
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.33 E-value=52 Score=24.84 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=51.5
Q ss_pred hcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhh
Q 040279 50 KSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCV 129 (626)
Q Consensus 50 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~ 129 (626)
-+|.+..++|-.+-+.....+.. ...+--.-+..+..+|+|++|..+.+... .||...|..+- -.+
T Consensus 15 gTG~HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc---------e~r 80 (115)
T TIGR02508 15 GTGHHCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALC---------EWR 80 (115)
T ss_pred HccchHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHH---------HHh
Confidence 34545677787777766443222 22222233445668888888888777663 67777776653 245
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 040279 130 ENRIKEATWLFKNMIAFG 147 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~ 147 (626)
.|-.+++..-+.++...|
T Consensus 81 lGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 81 LGLGSALESRLNRLAASG 98 (115)
T ss_pred hccHHHHHHHHHHHHhCC
Confidence 566666666677776665
No 378
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.11 E-value=1.3e+02 Score=29.49 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNK--FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
..+.-+.+.|..+|+++.|++.+.+...-- ....+..+..++..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356667777788888888888887754321 122334455566666667777777777777655
No 379
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.62 E-value=54 Score=24.77 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 419 VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLY 498 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (626)
.++|..+-+-+...+ .....+-..-+..+.+.|++++|..+.+.+. .||...|.+|. -.+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 456666655555433 1122222223445678899999998888773 58888887654 4467877888888888
Q ss_pred HHHCCCCCCHHHHH
Q 040279 499 MEKNGCAPNVVTFN 512 (626)
Q Consensus 499 ~~~~~~~p~~~~~~ 512 (626)
+..+| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 88776 55544443
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.42 E-value=1.2e+02 Score=27.83 Aligned_cols=261 Identities=13% Similarity=0.128 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHhHhcCCCCCHh---hHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHhhHHHHHHhhhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPSPPIS---SFNLLFGAVAKNRHYDAVISFYRKLVSI---GL--LPDFLTLNILINCFGNKERG 126 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~--~p~~~~~~~ll~~~~~l~~~ 126 (626)
++++|+..|+.+++..+....+ +...++....+.|++++...-|.+++.. .+ .-...+.|.++.-....-+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 7999999999999887765554 4455778889999999999999888632 11 22344455554321100001
Q ss_pred hhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCc-cccccHHHHHHHHH
Q 040279 127 LCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDY----ENGL-ISKTNIFSYSIIID 201 (626)
Q Consensus 127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~-~~~~~~~~~~~l~~ 201 (626)
-.-+.-++..+..+++..... .-..|-.-|...|...|++.+-.+++.++...-. +.+. ....-...|..=|.
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeR--LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNER--LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcce--eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 111112233333333333221 1112335678888888888888888877654210 0000 01122456777788
Q ss_pred HHHhcCCcchHHHHHHHHhhC-CCCCCcchHHHHH----HHHHhcCCHHHHHHHHHHHH----HCCCCCChh--hHHHHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGR-GINPAVVVCTTLI----HGFCCAGNWEEVNGLFIEML----DLGPRPNLL--TFNVMI 270 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~--~~~~l~ 270 (626)
.|..+.+-.+-..++++.... ..-|.+.+...+- ..+.+.|+|++|..-|-+.- +.|.+.... -|..+.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888876543 2233333333221 23456788988865444432 334332222 234444
Q ss_pred HHHHhcCC--HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 040279 271 DCLCKGGK--INEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLS 323 (626)
Q Consensus 271 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 323 (626)
..+.+.|- ++. ++.....-.|.....+.++.+|. .+++.+-.+++..
T Consensus 280 NMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 44444431 110 00011112344555666777664 3555555555443
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.85 E-value=55 Score=33.45 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=58.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 040279 86 AKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRT 165 (626)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 165 (626)
.-.|+...|+..+..+... .|...... ++. +++.+.+.|..-+|-.++.+.+... ...+.++..+.+++...
T Consensus 618 r~~gn~~~a~~cl~~a~~~--~p~~~~v~-~v~----la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL--APLQQDVP-LVN----LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLAL 689 (886)
T ss_pred eecCCcHHHHHHHHHHhcc--Chhhhccc-HHH----HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHH
Confidence 3478888888888776643 23222111 111 2344555666777877777776654 33456677788888888
Q ss_pred CChHHHHHHHHHHHhCC
Q 040279 166 GNLSVALRLHKKMVSGD 182 (626)
Q Consensus 166 g~~~~A~~~~~~~~~~~ 182 (626)
.+++.|++.|+++.+..
T Consensus 690 ~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLT 706 (886)
T ss_pred hhhHHHHHHHHHHHhcC
Confidence 88888888888887765
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.71 E-value=2e+02 Score=30.39 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNIL 409 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l 409 (626)
+++.+|.+.+-.+.+.+..|...-...+
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp ----------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 5566666665555555555554443333
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.65 E-value=19 Score=19.81 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGA 84 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (626)
|+.+.|..+|++++...| .+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHHH
Confidence 367888889998887655 367777766653
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.21 E-value=25 Score=30.79 Aligned_cols=32 Identities=16% Similarity=-0.002 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 541 LVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 541 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|++..+..++.++...|+.++|.++.+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666666666677666666666664
No 385
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.90 E-value=1.3e+02 Score=27.86 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=41.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHH
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLF 140 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~ 140 (626)
.+++-..+.+++++|+..|.+++..|+..+..+.+.-=...-.+...|...|+...-.+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3555667888999999999999988888887776654333333445666666655544433
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.86 E-value=1.6e+02 Score=30.39 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=40.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 040279 275 KGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMS 354 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 354 (626)
..|+...|...+.........-.-.....|.+...+.|...+|-.++.+..... ...+-++..+.+++....+.++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555444332111122223334444444455555555555444432 1233444455555555556666666
Q ss_pred HHHHHHHC
Q 040279 355 LYRQIISN 362 (626)
Q Consensus 355 ~~~~~~~~ 362 (626)
.|+++.+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66555554
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.15 E-value=67 Score=25.43 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (626)
..+-++.+...++.|++.....-+.+|.+.+++..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444455555556667777777777777777777777777766653
No 388
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.73 E-value=2.8e+02 Score=31.40 Aligned_cols=153 Identities=12% Similarity=0.018 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHhcccCCCCCCHhHHHHH
Q 040279 401 PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDN-AWELFHKLPQKGLVPTVVTYSIM 479 (626)
Q Consensus 401 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l 479 (626)
+|...-...+.++.+.+..+. + ..+.. .++..+-.....++...+..+. +...+..+.. .+|...-...
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~---l-~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES---V-AGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH---H-HHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 444444555555555444322 1 11111 3455555556666666554432 3344444443 2466666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccC
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDE 559 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 559 (626)
+.++...|..+.+...+..+.+ .++..+-...+.++...+. +++...+..+.+ .|+...-...+.++.+.+
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-----D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT-----DPHLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc-----CCCHHHHHHHHHHHhccC
Confidence 7777777765555455555554 3455555556666666654 455566666655 566666666667776643
Q ss_pred CHhHHHHHHHHHH
Q 040279 560 KYHECSAVSKSSY 572 (626)
Q Consensus 560 ~~~~A~~~~~~~~ 572 (626)
.-.++...+..+.
T Consensus 867 ~~~~a~~~L~~al 879 (897)
T PRK13800 867 GDPAARDALTTAL 879 (897)
T ss_pred CCHHHHHHHHHHH
Confidence 3345666666553
No 389
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.35 E-value=86 Score=25.33 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=11.2
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHH
Q 040279 549 SIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 549 ~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+.-.+.+.|+++++.++++..+
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444555555555544443
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.31 E-value=1.4e+02 Score=27.57 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=46.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 040279 340 INGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK---- 415 (626)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 415 (626)
|.+++..+++.+++...-+.-+..-+..+.....-|-.|.+.+.+..+.++-....+..-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666655444443322222333444455566667777666666666553222333345555554433
Q ss_pred -cCCHHHHHHHH
Q 040279 416 -NNCVQEAVKLF 426 (626)
Q Consensus 416 -~g~~~~A~~~~ 426 (626)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56777776665
No 391
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.72 E-value=2e+02 Score=29.01 Aligned_cols=432 Identities=13% Similarity=0.077 Sum_probs=226.5
Q ss_pred hhhhhcC--CHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHH
Q 040279 125 RGLCVEN--RIKEATWLFKNMIAFGVRPD--VITYGTLINGFC-RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 125 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (626)
..+...| +...+++.++.+....++.- ..+...++..+. -..+++.|...+++.......-+........++..|
T Consensus 15 e~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlL 94 (629)
T KOG2300|consen 15 EHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLL 94 (629)
T ss_pred HHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHH
Confidence 3444455 66777887777766532211 223333444433 367888999888877554321111112334567778
Q ss_pred HHHHHhcC-CcchHHHHHHHHhhCCCCCCcchH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CChhhHHHHH
Q 040279 200 IDSLCKEG-LVDKAKELFLEMKGRGINPAVVVC-----TTLIHGFCCAGNWEEVNGLFIEMLDLGPR---PNLLTFNVMI 270 (626)
Q Consensus 200 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~ 270 (626)
...|.... .+..+..++.+..+.. .+...| ..|+....-..++..|.+++ ..|.. +--..|..++
T Consensus 95 a~lh~~~~~s~~~~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~elL----avga~sAd~~~~~ylr~~ 168 (629)
T KOG2300|consen 95 AHLHHQLAQSFPPAKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALELL----AVGAESADHICFPYLRML 168 (629)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHHH----hccccccchhhhHHHHHH
Confidence 88888877 7888999998887652 122233 23556666778888888874 33321 1122232222
Q ss_pred ------HHHHhcCCHHHHHH---HHHHHHhcCCCCCHhh-------H-HHHHHHHHhcCChHHHHHHHHHHHhc---CC-
Q 040279 271 ------DCLCKGGKINEANG---LLELMIQRGLNPDRFT-------Y-NSLMDGYCLVGRIDTAREIFLSMHSK---GC- 329 (626)
Q Consensus 271 ------~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~-------~-~~ll~~~~~~g~~~~a~~~~~~~~~~---~~- 329 (626)
.......+..++.+ ...++.+. ..+|... | +.-+..|...|+...+...++++... +.
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 12222334444444 44445443 3444322 1 12233455678888877777776543 11
Q ss_pred -----------CCChhhHHHHHH----HH---------HhcCChHHHHHHHHHHHHC----CCCC-ChhhHH--------
Q 040279 330 -----------KHTVVSYNILIN----GY---------CKILNVEEAMSLYRQIISN----GVRQ-TVITYN-------- 372 (626)
Q Consensus 330 -----------~~~~~~~~~l~~----~~---------~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~-------- 372 (626)
.|....+..+.. ++ ...|-+++|.++-++++.. ...+ ....++
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 122222211111 11 1234455555555444322 0111 122221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH--
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYN-VEPDL-------STYNILI-DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIF-- 441 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 441 (626)
.++..-.-.|++.+|++-...|.+.- -.|.+ .....++ ..+...|.++.|...|....+..-..|...+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 12222245699999998888886521 12331 1122222 3345678999999999776654434444333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHH----------HHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTY----------SIMIHGLCRKGKLEKANDFLLYMEKNGC-----AP 506 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p 506 (626)
..+.-.|.+.|+.+.-.++++.+-.. +..++ ..-.-....++++.+|..++.+-.+..- +.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p~----nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL 483 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGPL----NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRL 483 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCC----CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHH
Confidence 33556688888888888887776542 22211 1111223467899999999988776421 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHH--HH--HHHHHHHccCC--HhHHHHHH
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTT--FS--IVVDLLAKDEK--YHECSAVS 568 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~--~~--~l~~~~~~~g~--~~~A~~~~ 568 (626)
..-.+..+...+...|+..++.+.+.-..+. ..--||..+ |. .+-+.+...|+ -++..+.+
T Consensus 484 ~a~~LvLLs~v~lslgn~~es~nmvrpamql-AkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQL-AKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhccchHHHH-HhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 1223344455677889999888877765541 123456443 22 22334455555 34444333
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.40 E-value=1.1e+02 Score=30.16 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=40.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVI--TYGTLINGFC--RTGNLSVALRLHKKMVSG 181 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 181 (626)
..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566889999999999999886 555544 3444444443 577888999999987654
No 393
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.45 E-value=1.2e+02 Score=27.07 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=59.4
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040279 435 EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPTVVTYS--IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTF 511 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (626)
.+...-+|.|+--|.-...+.+|-+.|..-..-.. ..|..+++ .-+......|+.++|++...++.-.-+..|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 45556666666666666666666666654433211 22344443 3455667788888888888877544344454444
Q ss_pred HHHHH----HHHhcCCHHHHHHHHHHhhc
Q 040279 512 NTLMH----GFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 512 ~~l~~----~~~~~g~~~~a~~~~~~~~~ 536 (626)
-.+.. -..+.|..++|+++.+.=+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 33332 23467777777777776554
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.26 E-value=16 Score=34.44 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=41.3
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 040279 450 KAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~ 528 (626)
..|.+++|++.|...+... ++....|..-..++.+.++...|++-+....+. .||. ..|-.-..+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3455556666555555542 233444444455555555555555555555543 2332 12222223333455666666
Q ss_pred HHHHHhhc
Q 040279 529 ELLHKMAE 536 (626)
Q Consensus 529 ~~~~~~~~ 536 (626)
..+....+
T Consensus 203 ~dl~~a~k 210 (377)
T KOG1308|consen 203 HDLALACK 210 (377)
T ss_pred HHHHHHHh
Confidence 66666555
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.91 E-value=2e+02 Score=28.22 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-----CCCCCHhHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQK-----GLVPTVVTYSIMI 480 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~ 480 (626)
.+.....+...| .+++...+++++++... -+.|++.++..+|
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 344444444443 46788888888887653 2334555444444
No 396
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.30 E-value=3.3e+02 Score=30.97 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=84.6
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHC-----------------------CCCCC-----HhHHHHHHHHHHhcCChHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAF-----------------------GVRPD-----VITYGTLINGFCRTGNLSVALRL 174 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~-----~~~~~~li~~~~~~g~~~~A~~~ 174 (626)
++.+|...|...+|+..|.+.... |-.|. ..-|...++.+-+.+-.+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345688899999999999887542 11111 11244556666667777777777
Q ss_pred HHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHH---------
Q 040279 175 HKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWE--------- 245 (626)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------- 245 (626)
-..+++.-... .+.-..+++.+.+.....|.+.+|.+.+-..... .........++..+..+|.++
T Consensus 1006 A~~AIe~l~dd---~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfig 1080 (1480)
T KOG4521|consen 1006 AVKAIENLPDD---NPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIG 1080 (1480)
T ss_pred HHHHHHhCCCc---chhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccc
Confidence 66666543110 1222345566666666677777666654432221 111234445555556666543
Q ss_pred ---HHHH-HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040279 246 ---EVNG-LFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286 (626)
Q Consensus 246 ---~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 286 (626)
+... +++..-+..+......|+.+-..+...+++.+|-.++
T Consensus 1081 l~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1081 LEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred hHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3333 2322222222223345555556666677776655443
No 397
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.04 E-value=1.9e+02 Score=27.75 Aligned_cols=118 Identities=11% Similarity=0.040 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK---AGRLDNAWELF 461 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 461 (626)
+.-+.++++.++.+ +.+......++..+.+..+.++..+.++.+.... +.+...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666652 3445556666666667677777777777776553 3356666666655433 22344555555
Q ss_pred HhcccC------CC------CCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 462 HKLPQK------GL------VPT-----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 462 ~~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
.+.... +. .++ ...+..+...+...|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 10 011 11223333445678889999999998888654
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.98 E-value=1.9e+02 Score=30.85 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=16.8
Q ss_pred ccCCHhHHHHHHHHHHhhccccccccCCchh
Q 040279 557 KDEKYHECSAVSKSSYRACLYVTIFQPSSLG 587 (626)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~ 587 (626)
-++++.+|.+.-+.|. ..+|.+|.
T Consensus 378 LAnd~~kaiqAae~mf-------KLk~P~WY 401 (1226)
T KOG4279|consen 378 LANDYQKAIQAAEMMF-------KLKPPVWY 401 (1226)
T ss_pred hccCHHHHHHHHHHHh-------ccCCceeh
Confidence 4677777777777775 55777764
No 399
>PRK10941 hypothetical protein; Provisional
Probab=55.91 E-value=1.7e+02 Score=27.16 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=53.0
Q ss_pred HHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 115 ILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 115 ~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.+.+....+-..|.+.++++.|+.+.+.++... +.+..-+.--+-.|.+.|.+..|..=++..++.-
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 334444466678889999999999999999874 4456667778888999999999999998887754
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.34 E-value=68 Score=23.95 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 484 CRKGKLEKANDFLLYMEKN----GCAPN----VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.|++.+|.+.+.+..+. +.... ......+.......|++++|...++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666665555444332 11110 12223344455667777777777777765
No 401
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.20 E-value=2.2e+02 Score=28.00 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=70.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhcC-CC---CCCCCHHHHHHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF-LQNNKTSKVVELLHKMAEP-ER---NLVPDDTTFSIVVD 553 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~-~~---~~~p~~~~~~~l~~ 553 (626)
.+..+.+.|-+.-|.++.+-+...+..-|+......+..| .+.++++--+++++..... .. ..-|+- ...++-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~--a~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF--AFSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH--HHHHHH
Confidence 3556788999999999999999875333666666777755 4788888888887775430 00 012322 222333
Q ss_pred HHHccCCH---------------hHHHHHHHHHHhhccccccccCCchhhhhhhh
Q 040279 554 LLAKDEKY---------------HECSAVSKSSYRACLYVTIFQPSSLGSMIGCT 593 (626)
Q Consensus 554 ~~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 593 (626)
++...++. ++|.+.++++. ...|.++..|+..+
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai-------~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAI-------LRFPWVLVPLLDKL 234 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHH-------HHhHHHHHHHHHHh
Confidence 44445555 88999998886 55777777777665
No 402
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.60 E-value=1.4e+02 Score=26.96 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 516 HGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.++...|++-++++...+.+. ..| +...|..-+.+.+..=+.++|..-+..++
T Consensus 238 QC~L~~~e~yevleh~seiL~----~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILR----HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 344445555555555555554 333 34455555555555555555555555554
No 403
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.59 E-value=82 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhHhcCCCC-----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040279 56 LNEARYFFGYMTHMQPSP-----PISSFNLLFGAVAKNRHYDAVISFYRKLVSIG 105 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 105 (626)
+..|...|.+.......| .......++....+.|++++|...|.++...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 355777777776544332 23445556677778899999999999988653
No 404
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.53 E-value=22 Score=24.10 Aligned_cols=23 Identities=26% Similarity=0.130 Sum_probs=11.5
Q ss_pred HHHHHHHHccCCHhHHHHHHHHH
Q 040279 549 SIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 549 ~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
..++..|...|++++|.++++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555555555555555554
No 405
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.23 E-value=3.1e+02 Score=29.46 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=60.4
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVPTV--VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (626)
..-|+-++|..+.++|.... .|-. .-..+++.+|+-.|+.....+++.-.... ...|..-...+.-++.-..+++.
T Consensus 512 ~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 512 VVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhh
Confidence 34455556666666665431 1111 11223445566666655555555444432 12233333333334455566666
Q ss_pred HHHHHHHhhcCCCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 527 VVELLHKMAEPERNLVPDD--TTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
...+.+-+.+ ..+|.. .+-..|+-+|+-.|. .+|..+++.+
T Consensus 590 ~~s~V~lLse---s~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl 632 (929)
T KOG2062|consen 590 LPSTVSLLSE---SYNPHVRYGAAMALGIACAGTGL-KEAINLLEPL 632 (929)
T ss_pred chHHHHHHhh---hcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhh
Confidence 6666666654 234433 234455566777775 7888888887
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.05 E-value=1.1e+02 Score=24.41 Aligned_cols=44 Identities=7% Similarity=0.163 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 491 KANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
.+.++|..|..+|+.-.. ..|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 666666666666544432 34455555666666666666666543
No 407
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.01 E-value=30 Score=23.48 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+...++++.+... +-|..---.++.++...|++++|.++++.+..
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444331 22444444556666677777777766666654
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.88 E-value=90 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCcC--HH-----HHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 419 VQEAVKLFHMLEMNKFEFG--IE-----IFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~--~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
++.|+.+|+.+.+....|. .. +-...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4566666666654432221 01 112334457777777777777777765
No 409
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.65 E-value=21 Score=35.40 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=47.4
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 526 (626)
...++++.|..++.++++. .|| ...|..-..++.+.+++..|+.=+..+++.. |+. ..|..-..++.+.+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 3445555666666655553 333 2223333345555566666665555555532 322 233333344555555566
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHH
Q 040279 527 VVELLHKMAEPERNLVPDDTTFSIVV 552 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p~~~~~~~l~ 552 (626)
|...|+.... +.|+..-....+
T Consensus 91 A~~~l~~~~~----l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 91 ALLDLEKVKK----LAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHhhh----cCcCcHHHHHHH
Confidence 6666665555 556544444443
No 410
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.25 E-value=47 Score=33.04 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+++.|..++.++++.+|. .+..|..-..++.+.+++..|+.=+..+++. .| ..+.+|.+-+.+....+.+.
T Consensus 19 ~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP------~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIEL--DP------TYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhc--Cc------hhhheeeeccHHHHhHHHHH
Confidence 799999999999997665 4555666667888999999999888888865 23 23344433344555667788
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFC 163 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 163 (626)
+|...|+..... .|+..-....+.-|-
T Consensus 90 ~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 888888888775 677666666555553
No 411
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=52.88 E-value=2.2e+02 Score=27.40 Aligned_cols=118 Identities=13% Similarity=0.162 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcCCCCCCCCHHHHHHHHHHHHc
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK-VVELLHKMAEPERNLVPDDTTFSIVVDLLAK 557 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 557 (626)
+...+++.++-+.+..+-+.+.. -|.. ....+..++....-.+. +..+.+.+.. .||......+++++..
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~---lP~~-vl~aL~~~LEh~~l~~~l~~~l~~~~~~-----~~d~~~~~a~lRAls~ 242 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPH---LPPE-VLYALCGCLEHQPLPDKLAEALLERLEQ-----APDLELLSALLRALSS 242 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhh---CChH-HHHHHHHHhcCCCCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHcC
Confidence 34555555555544444333332 1222 23333333333332222 2333333333 2666666666666666
Q ss_pred cCCHhHHHHHHHHHHhhccccccccCCchhhhhhhheeccCCccchhcccc
Q 040279 558 DEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCTVRLMPQPEMSDTLGD 608 (626)
Q Consensus 558 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 608 (626)
..........+...+... ...+|+++.++.++|+....|.+..+.+++
T Consensus 243 ~~~~~~~~~~i~~~L~~~---~~~~~e~Li~IAgR~W~~L~d~~~l~~fle 290 (340)
T PF12069_consen 243 APASDLVAILIDALLQSP---RLCHPEVLIAIAGRCWQWLKDPQLLRLFLE 290 (340)
T ss_pred CCchhHHHHHHHHHhcCc---ccCChHHHHHHHhcCchhcCCHHHHHHHHH
Confidence 555444444455554221 123556666667777777766666554444
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=2e+02 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 040279 373 TLLSGLFQAGQAGYAQKLFDE 393 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~ 393 (626)
.++..+.+.|++.+|+.+...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 456667777777777665443
No 413
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.07 E-value=2.1e+02 Score=26.92 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=7.3
Q ss_pred CHHHHHHHHHhcccC
Q 040279 453 RLDNAWELFHKLPQK 467 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~ 467 (626)
+..+|...|.+..+.
T Consensus 206 d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 206 DLKKAFRWYKKAAEQ 220 (292)
T ss_pred CHHHHHHHHHHHHHC
Confidence 444555555554444
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.68 E-value=94 Score=22.82 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 213 (626)
.+.++++...+.|+- +......+-.+-...|+.+.|.+++..+. ++ +..|...+.++...|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhhh
Confidence 456677777777643 33333333333346689999999999987 65 456778888888887765554
No 415
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.67 E-value=1.1e+02 Score=27.89 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK-NNCVQEAVKLFHMLE 430 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 430 (626)
.++....+.+++++....++++...+...+..-.+.+..+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455566667777777777777666555555555555555532 344455555555444
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.53 E-value=61 Score=20.56 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=20.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
.+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666666677777766666666666655543
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.14 E-value=82 Score=27.50 Aligned_cols=32 Identities=6% Similarity=0.121 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|+..++..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777777777777777777766
No 418
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=50.98 E-value=3.9e+02 Score=29.71 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcC
Q 040279 265 TFNVMIDCLCKGGKINEANGLLELMIQR-GLNPDRFTYNSLMDGYCLVG 312 (626)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g 312 (626)
++..-...+...|++..+.+++.++.+. |-.++...+..++..+...|
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3333334444445555555554444432 22334444444444444433
No 419
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.73 E-value=3.1e+02 Score=28.46 Aligned_cols=107 Identities=8% Similarity=0.112 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHc
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL-QNNKTSKVVELLHKMAEP-ERNLVPDDTTFSIVVDLLAK 557 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~ 557 (626)
+..+.+.|-+.-|.++.+-+.+....-|+.....++..|+ +..+++=.+++++..... ....-|+-..-..++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3445677888888888888887653335666677777554 677777777766665320 02244665544555555555
Q ss_pred cCC---HhHHHHHHHHHHhhccccccccCCchhhhhhhh
Q 040279 558 DEK---YHECSAVSKSSYRACLYVTIFQPSSLGSMIGCT 593 (626)
Q Consensus 558 ~g~---~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 593 (626)
... .+.|...+.++. ...|.++..|+..+
T Consensus 429 ~~~~~~rqsa~~~l~qAl-------~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL-------KHHPLVLSELLDEL 460 (665)
T ss_pred cCChhhHHHHHHHHHHHH-------HhCcHHHHHHHHhc
Confidence 444 567777777775 44666655555543
No 420
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.45 E-value=8.7 Score=36.06 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040279 130 ENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSG 181 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (626)
.|.++.|++.|...+... ++....|..-.+++.+.+....|++=+......
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei 177 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI 177 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc
Confidence 444555555555554442 223333444444455555555555544444443
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.44 E-value=2.7e+02 Score=27.64 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=9.0
Q ss_pred hcCChHHHHHHHHHHHHC
Q 040279 345 KILNVEEAMSLYRQIISN 362 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~ 362 (626)
..+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555443
No 422
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.28 E-value=4e+02 Score=29.67 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 577788888888888888888888765
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.66 E-value=83 Score=23.48 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=31.3
Q ss_pred HHcCCHHHHHHHHHhccc----CCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQ----KGLVP----TVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~----~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
.+.|++.+|.+.+.+..+ .+... -......+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777555544433 22111 122233455667778999999998888865
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.21 E-value=26 Score=28.01 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=24.7
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
..+.|.-..|..+|.+|.+.|-+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445777888999999999987766 67777654
No 425
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.94 E-value=2e+02 Score=25.76 Aligned_cols=103 Identities=19% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH--HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKF-EFGIEIF--NCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVT 475 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 475 (626)
+.+...-++.|+--|.-...+.+|-..|..-..... ..+...+ ..-+......|+++.|++....+...-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 345566667777666666666666666643322211 2233333 3456667899999999999998765333345433
Q ss_pred HHHHHH----HHHhcCCHHHHHHHHHHHHH
Q 040279 476 YSIMIH----GLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 476 ~~~l~~----~~~~~g~~~~A~~~~~~~~~ 501 (626)
+..|.. -..+.|..++|+++.+.=..
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 333322 24667778888877665543
No 426
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.44 E-value=4.1e+02 Score=29.26 Aligned_cols=230 Identities=12% Similarity=0.032 Sum_probs=113.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-------hhHHHHH-HHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 040279 343 YCKILNVEEAMSLYRQIISNGVRQTV-------ITYNTLL-SGLFQAGQAGYAQKLFDEMKLY----NVEPDLSTYNILI 410 (626)
Q Consensus 343 ~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 410 (626)
.....++++|..++.++...-..|+. ..++.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567788888888777654222222 1233322 1234567888888887776643 1123344555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHH---HHHH--HHHHHHcCCHH--HHHHHHHhcccC--CCCC----CHhHHH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEI---FNCL--IDGLCKAGRLD--NAWELFHKLPQK--GLVP----TVVTYS 477 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~~~--~A~~~~~~~~~~--~~~p----~~~~~~ 477 (626)
.+..-.|++++|..+..+..+..-.-+... |..+ ...+..+|+.. +.+..|...... +-.| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666677888888888866554321222222 2222 23345566332 233333332221 0011 123344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhcCCCC--CCCCHHHHHHHH
Q 040279 478 IMIHGLCRK-GKLEKANDFLLYMEKNGCAPNVVTF--NTLMHGFLQNNKTSKVVELLHKMAEPERN--LVPDDTTFSIVV 552 (626)
Q Consensus 478 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~p~~~~~~~l~ 552 (626)
.+..++.+. +...++..-+.--......|-.... ..++......|+.++|...+.++...-.+ ..++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 1122222222222222111111222 25667777889999888888877651111 122333333333
Q ss_pred HH--HHccCCHhHHHHHHHHHH
Q 040279 553 DL--LAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 553 ~~--~~~~g~~~~A~~~~~~~~ 572 (626)
.. -...|+..+|..+..+-.
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhcc
Confidence 33 235788888888877743
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=48.43 E-value=2.6e+02 Score=32.17 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=73.6
Q ss_pred CHHHHHH------HHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhhHHHHHHhhhhh
Q 040279 55 NLNEARY------FFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVS-----IGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 55 ~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ll~~~~~l 123 (626)
.+.+|.. +++.....-.+.....|..+...+.+.|+.++|+..-..... .|..+ .+. +..|+.+
T Consensus 947 ~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds----~~t-~~~y~nl 1021 (1236)
T KOG1839|consen 947 GFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS----PNT-KLAYGNL 1021 (1236)
T ss_pred chhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC----HHH-HHHhhHH
Confidence 5666666 676543333444667888899999999999999987765431 12222 111 1122222
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHC-----C--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040279 124 ERGLCVENRIKEATWLFKNMIAF-----G--VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSG 181 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (626)
.-.....+....|...+.+.... | -+|...+++.+-..+...++++.|++..+.+...
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344555777777777776543 2 1333444455555555668899999999888763
No 428
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.00 E-value=2.6e+02 Score=26.78 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChH
Q 040279 91 YDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVI-TYGTLINGFCRTGNLS 169 (626)
Q Consensus 91 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~ 169 (626)
.+++..++++....+. |........|.++..... ....-++..-..+|+-+... .|+++ +.|.- .+.....-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~--apSPvV~LNRA-VAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQA--APSPVVTLNRA-VALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHh--CCCCeEeehHH-HHHHHhhhHH
Confidence 3455666666665554 777777777766543222 23344666667777766665 33333 33333 2333333455
Q ss_pred HHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC
Q 040279 170 VALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR 222 (626)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (626)
.++.+.+-+...+. ...-...+..-...+.+.|+.++|...|+.....
T Consensus 347 agLa~ve~L~~~~~-----L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPR-----LDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccc-----cccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 66666666554420 0111112233345566667777777777766553
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.93 E-value=2.2e+02 Score=25.92 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ-AGQAGYAQKLFDEMK 395 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 395 (626)
..++...-+.++++++...++++...+...+..-.+.+..+|-. -|....+++++..+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34567777889999999999999998777777777777666632 345555666665554
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.56 E-value=38 Score=31.39 Aligned_cols=52 Identities=17% Similarity=0.031 Sum_probs=30.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.|+.++|..+|+...... +.++..+..+.......++.-+|-++|-+++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 35566677777776666642 33344555555554455566666666666665
No 431
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=2.3e+02 Score=25.77 Aligned_cols=106 Identities=15% Similarity=0.002 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH------CCCCCCHhhHHHHHHh----hhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVS------IGLLPDFLTLNILINC----FGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~g~~p~~~~~~~ll~~----~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
.+...-++-+.+.|++.+|..-|.+++. ..-.|....|..+-.. +.+..+.+...|++-++++...+++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3444455667788999888887776531 1225655555433221 11233677788999999999999998
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 146 FGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 146 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.. +.++.+|..-..+.+..-+.++|..=|..+++.+
T Consensus 259 ~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 259 HH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred cC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 74 5678888888888888889999999999998765
No 432
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.42 E-value=3.4e+02 Score=27.73 Aligned_cols=166 Identities=10% Similarity=0.090 Sum_probs=94.2
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 295 NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTL 374 (626)
Q Consensus 295 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 374 (626)
..|.....+++..+...-.+.-...+..+|...| .+...+..++.+|..+ ..++-..+|+++.+-... |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3455556667777777777777777777777764 3566677777777776 556667777777665322 33333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNVEP--D---LSTYNILIDGLCKNNCVQEAVKLFHMLEM-NKFEFGIEIFNCLIDGL 448 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~ 448 (626)
...| ..++...+...|.++...-++. + ...|.-+...- ..+.+....+...+.. .|...-...+..+-.-|
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4433 3377777777777765432211 1 11233222211 2455556666555553 23233334444455566
Q ss_pred HHcCCHHHHHHHHHhcccC
Q 040279 449 CKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~ 467 (626)
....++++|++++..+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 6677777777777777664
No 433
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.91 E-value=74 Score=21.59 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHH-----HhcCChhHHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAV-----AKNRHYDAVISFY 98 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~ 98 (626)
|++-+|-++++.+....+.+....+..+|+.. .+.|+...|..++
T Consensus 13 g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 13 GDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp T-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred CCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 48999999999998755555566677776654 3788888887764
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.73 E-value=1.4e+02 Score=24.71 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=21.8
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh
Q 040279 287 ELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVS 335 (626)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 335 (626)
+.+.+.|++++.. -..+++.....++.-.|.++++.+.+.+...+..|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3344444444432 22344444444444555555555555544433333
No 435
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.45 E-value=1.4e+02 Score=23.00 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
..++|..+.+-+...+. ....+-..-+..+.+.|++++|+.. -.. ...||...|.+|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~--~~~--~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL--PQC--HCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH--HTT--S--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh--ccc--CCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45566666655554432 1222222233445566666666211 111 1235655555443 345666666666666
Q ss_pred HHHHCC
Q 040279 498 YMEKNG 503 (626)
Q Consensus 498 ~~~~~~ 503 (626)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665544
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.74 E-value=1.4e+02 Score=22.93 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=47.8
Q ss_pred hhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhh
Q 040279 49 CKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLC 128 (626)
Q Consensus 49 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~ 128 (626)
.-.|.+..++|-.+.+.....+.. ...+--.-+..+..+|+|++|. .. ......||...|-.+- -.
T Consensus 15 ~atG~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL~---------a~ 80 (116)
T PF09477_consen 15 MATGHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAALC---------AW 80 (116)
T ss_dssp HHHTTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHHH---------HH
T ss_pred HHhhhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHHH---------HH
Confidence 345556788888888887665443 2233333445567888888882 11 1222366766666552 34
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 040279 129 VENRIKEATWLFKNMIAFG 147 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~ 147 (626)
+.|-.+++...+.++...|
T Consensus 81 klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 81 KLGLASALESRLTRLASSG 99 (116)
T ss_dssp HCT-HHHHHHHHHHHCT-S
T ss_pred hhccHHHHHHHHHHHHhCC
Confidence 6677777777777776654
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.31 E-value=45 Score=31.08 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 040279 266 FNVMIDCLCKGGKINEANGLLELMIQRGLNPDR 298 (626)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 298 (626)
|+..|....+.||+++|++++++.++.|+.--.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar 292 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSAR 292 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Confidence 345566666666666666666666666554333
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.70 E-value=84 Score=19.92 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=14.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 040279 275 KGGKINEANGLLELMIQRGLNPDRFTYNSL 304 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 304 (626)
+.|-..++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444445555555555544444444433
No 439
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.65 E-value=1.3e+02 Score=22.13 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=6.4
Q ss_pred CChHHHHHHHHHHH
Q 040279 312 GRIDTAREIFLSMH 325 (626)
Q Consensus 312 g~~~~a~~~~~~~~ 325 (626)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 440
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.87 E-value=54 Score=29.18 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 485 RKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+.++.+.+.+++.+..+.- +-....|..+...-.+.|+.+.|.+.|++..+
T Consensus 7 ~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3445555555555555431 22233444444444455555555555555544
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.71 E-value=1.3e+02 Score=27.60 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=21.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHhcCChHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAF----G-VRPDVITYGTLINGFCRTGNLSVALRL 174 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 174 (626)
..|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444444444321 1 122233344444555555555554443
No 442
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.71 E-value=48 Score=18.92 Aligned_cols=23 Identities=4% Similarity=0.170 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 524 TSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 524 ~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
++.|..+|++.+. +.|+..+|..
T Consensus 3 ~dRAR~IyeR~v~----~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL----VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH----hCCCchHHHH
Confidence 3455555555555 4455554443
No 443
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.28 E-value=3e+02 Score=25.66 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHhhHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCCCh----
Q 040279 263 LLTFNVMIDCLCKGGKINEANGLLELMIQR----GLNPDRFTYNSLMD-GYCLVGRIDTAREIFLSMHSKGCKHTV---- 333 (626)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 333 (626)
...+..+...|++.++.+.+.+.+++..+. |.+.|......-+. .|....-.++-++..+.+.++|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 456777788888888888887776665443 55555433222221 222223345556666666666543221
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
.+|.-+. +....++.+|-.++-+...
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 1121111 1223456666666655544
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.20 E-value=2e+02 Score=28.59 Aligned_cols=99 Identities=12% Similarity=0.212 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-------CCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK-------GLVPTV-----VTYSIMIHGLCRKGKLEKANDFLLYMEKN- 502 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 502 (626)
.+......++..+....++.+-++..+...+. |..|-. .+...|++.++-.||+..|+++++.+.-.
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 34444455556666666666666655553221 111110 12234455566667777776666655321
Q ss_pred -C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 503 -G----CAP-NVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 503 -~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
+ +++ ...++-.++-+|.-.+++.+|.+.|...
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1234445555666666666666666554
No 445
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=41.14 E-value=3.1e+02 Score=25.72 Aligned_cols=64 Identities=6% Similarity=0.018 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 400 EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN-KFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 400 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
.++..+...++..+++.+++.+-.++++..... +...|...|..++......|+..-..++.++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 455555666666666666666666666554433 4445666666666666666666655555554
No 446
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.94 E-value=2.2e+02 Score=24.53 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=11.2
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040279 482 GLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (626)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555554
No 447
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=40.49 E-value=3.2e+02 Score=25.68 Aligned_cols=149 Identities=12% Similarity=-0.004 Sum_probs=77.6
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cC
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFC----CAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK----GG 277 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 277 (626)
.+++..+.+.+......+ +......+...|. ...+..+|.++|+...+.|. ......+...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 345566666666665533 2233333444333 23457778888886666553 2333445555544 33
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----c
Q 040279 278 KINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVG-------RIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----I 346 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 346 (626)
+..+|...++..-+.|..+.......+...|.... +...|...+.+....+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 77788888888877765433222333333333321 1235666666666654 33344444444432 2
Q ss_pred CChHHHHHHHHHHHHCC
Q 040279 347 LNVEEAMSLYRQIISNG 363 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~ 363 (626)
.+.++|...|....+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 35666666666666654
No 448
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.17 E-value=5.7e+02 Score=28.55 Aligned_cols=109 Identities=16% Similarity=0.038 Sum_probs=53.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC--------HHHHHHH-----HHhccc--CCCCCC-----
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGR--------LDNAWEL-----FHKLPQ--KGLVPT----- 472 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~-----~~~~~~--~~~~p~----- 472 (626)
|......+-+...++.+....-..+....+.++..|...=+ -+++.+. +..+.+ ..+.|.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~ 680 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER 680 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh
Confidence 34455666666777666654444555556666665543211 1122222 111111 111121
Q ss_pred ---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHHhc
Q 040279 473 ---VVTYSIMIHGLCRKGKLEKANDFLLYMEKN-------------GCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 473 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 521 (626)
...|....-.+.+.|+.++|+.++-..... ..+++...|..+++.|...
T Consensus 681 ~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 681 LNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred ccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 222333333445667777777666554431 1244667777777777665
No 449
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.77 E-value=24 Score=28.26 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=24.6
Q ss_pred HHHccCCHhHHHHHHHHHHhhccccccccCCchhhhhhhh
Q 040279 554 LLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCT 593 (626)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 593 (626)
.+.+.|.-.+|..+|++|+..+ ..||.|..|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G-----~pPddW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERG-----NPPDDWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCC-----CCCccHHHHHHHh
Confidence 3455677788888888887663 3777788877654
No 450
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.04 E-value=75 Score=18.67 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=17.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
.+..++-.+...|++++|.++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45566777888999999999955
No 451
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.71 E-value=1.1e+02 Score=26.34 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.-+.-|.+.|+++.+...|.++..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 345556677777777777777765
No 452
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.56 E-value=3e+02 Score=24.85 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
..+.....|-.-...++..++-.+...|+++.|+++.+.+++.|.+.-...-......++ ++....-....+.|-
T Consensus 70 ~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va-----eev~~~A~~~~~ag~ 144 (230)
T PHA02537 70 WVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA-----EEVANAALKAASAGE 144 (230)
T ss_pred HHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH-----HHHHHHHHHHHHcCC
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH---------HccCCHhHHHHHHHHHHhhc
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLL---------AKDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~ 575 (626)
+.+......+...-....-+++...=+-++. +..+ ...++...|..+++++.
T Consensus 145 ~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~----------------G~~llr~~~g~~~~d~~~l~~Al~~L~rA~--- 205 (230)
T PHA02537 145 SVEPYFLRVFLDLTTEWDMPDEVRAKLYKAA----------------GYLLLRNEKGEPIGDAETLQLALALLQRAF--- 205 (230)
T ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHH----------------HHHHhhcccCCCccCcccHHHHHHHHHHHH---
Q ss_pred cccccccCCc
Q 040279 576 LYVTIFQPSS 585 (626)
Q Consensus 576 ~~~~~~~p~~ 585 (626)
..+|..
T Consensus 206 ----~l~~k~ 211 (230)
T PHA02537 206 ----QLNDKC 211 (230)
T ss_pred ----HhCCCC
No 453
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.44 E-value=3.5e+02 Score=25.34 Aligned_cols=98 Identities=9% Similarity=0.148 Sum_probs=53.8
Q ss_pred cccHHHHHHHHHHHHh-cC-CcchHHHHHHHHhhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhh
Q 040279 190 KTNIFSYSIIIDSLCK-EG-LVDKAKELFLEMKGR-GINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL-GPRPNLLT 265 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 265 (626)
-.|..+...+++.... .+ ....-.++.+-+... |..++..+...++..++..++|.+-.++++..... ++..|...
T Consensus 161 i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rp 240 (292)
T PF13929_consen 161 IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRP 240 (292)
T ss_pred eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCch
Confidence 3455555566655554 21 222223333333322 23455666666667777777777777666665543 44556666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 040279 266 FNVMIDCLCKGGKINEANGLLE 287 (626)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~ 287 (626)
|..+++.-...|+..-..++.+
T Consensus 241 W~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 241 WAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHHHcCCHHHHHHHhh
Confidence 7777777777777555444443
No 454
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.28 E-value=1.5e+02 Score=24.43 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPN 262 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 262 (626)
++..+...++.-.|.++++++.+.++..+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 33444444444555555555554444333
No 455
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.02 E-value=67 Score=30.04 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPR 260 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (626)
|+..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555556666666666666666665544
No 456
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.93 E-value=5.4e+02 Score=29.27 Aligned_cols=213 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHH-----
Q 040279 303 SLMDGYCLVGRIDTAREIFLSMHSK---GCKHTVVSYNILINGYCK-ILNVEEAMSLYRQIISNGVRQTVITYNT----- 373 (626)
Q Consensus 303 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~----- 373 (626)
..+..+...+++.+|..+.++-+-. =...+...|-.-+..+.+ .++.+---.++..+.+..+....+.-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 374 -----LLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN--CVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 374 -----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
-.......++.+...+.+...... ..-.......++.+|.+.+ ++++|+..+.++.+.....-......++-
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~f 857 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCF 857 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhee
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (626)
.---..-++.|+.+|+-=+ +++-+-..++|+.|-+.+++++.+ ++|+..-|. .=...+++++
T Consensus 858 LvDvn~Ly~~ALG~YDl~L------------al~VAq~SQkDPKEYLPfL~~L~~--l~~~~rry~----ID~hLkRy~k 919 (928)
T PF04762_consen 858 LVDVNKLYDVALGTYDLEL------------ALMVAQQSQKDPKEYLPFLQELQK--LPPLYRRYK----IDDHLKRYEK 919 (928)
T ss_pred eccHHHHHHHHhhhcCHHH------------HHHHHHHhccChHHHHHHHHHHHh--CChhheeee----HhhhhCCHHH
Q ss_pred HHHHHHHh
Q 040279 527 VVELLHKM 534 (626)
Q Consensus 527 a~~~~~~~ 534 (626)
|++.+.++
T Consensus 920 AL~~L~~~ 927 (928)
T PF04762_consen 920 ALRHLSAC 927 (928)
T ss_pred HHHHHHhh
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.84 E-value=2.8e+02 Score=29.24 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=51.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcc------hHHHHHHHHhhCCCCCCcch
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVD------KAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~ 230 (626)
+|+.+|..+|++-.+.++++.+...+.. -..-...++..++.+.+.|.++ .|.+.++...- .-|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~----~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG----DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC----CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchH
Confidence 7899999999999999999998865411 1223456778888888888764 34445554442 336667
Q ss_pred HHHHHHHH
Q 040279 231 CTTLIHGF 238 (626)
Q Consensus 231 ~~~li~~~ 238 (626)
|..++.+-
T Consensus 106 ~all~~~s 113 (1117)
T COG5108 106 YALLCQAS 113 (1117)
T ss_pred HHHHHHhh
Confidence 76666543
No 458
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.45 E-value=4e+02 Score=25.63 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=42.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHH--HHHHHHHHHcCCHHHHHHHHHhccc-----CCCCCCHh-HHH
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMN---KFEFGIEIF--NCLIDGLCKAGRLDNAWELFHKLPQ-----KGLVPTVV-TYS 477 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~-~~~ 477 (626)
++...-+.++.++|++.++++.+. .-.|+...| ......+...|+..++.+.+++..+ .+++|++. .|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334445566788888888776632 223444444 3445566677888888887777655 45555443 244
Q ss_pred HHHH
Q 040279 478 IMIH 481 (626)
Q Consensus 478 ~l~~ 481 (626)
.+..
T Consensus 161 ~lss 164 (380)
T KOG2908|consen 161 SLSS 164 (380)
T ss_pred HHHH
Confidence 4433
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.06 E-value=1.6e+02 Score=26.93 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=22.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLD----LG-PRPNLLTFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (626)
+..-|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444555555555555554421 11 112223334444455555555554443
No 460
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.86 E-value=4.7e+02 Score=26.28 Aligned_cols=172 Identities=11% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh-------------------------------------
Q 040279 79 NLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG------------------------------------- 121 (626)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~------------------------------------- 121 (626)
..+..-++..|.++.|.+++++=+ |+..-.......+..|.
T Consensus 122 S~laadhvAAGsFetAm~LLnrQi--GivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~ 199 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNRQI--GIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPL 199 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHHHC---B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB---
T ss_pred CCcHHHHHHhCCHHHHHHHHHHHh--CccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcC
Q ss_pred ---------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccccc
Q 040279 122 ---------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTN 192 (626)
Q Consensus 122 ---------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 192 (626)
..+--+...|++++|+..|+.++ +...+.......+.+++.+++....+
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrE------------ 257 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICRE------------ 257 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHH------------
Q ss_pred HHHHHHHHHHHHhcCCc--------chHHHHHHHHhhCCCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 193 IFSYSIIIDSLCKEGLV--------DKAKELFLEMKGRGINPAVV--VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN 262 (626)
Q Consensus 193 ~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 262 (626)
|..-+..-...... ...+++---+..-.+.|... +....+....+.+++..|-.+-+++++.++.+.
T Consensus 258 ---Yilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 258 ---YILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp ---HHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred ---HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Q ss_pred hhhHHHHHHHHHhcC
Q 040279 263 LLTFNVMIDCLCKGG 277 (626)
Q Consensus 263 ~~~~~~l~~~~~~~~ 277 (626)
...-..-+...+...
T Consensus 335 ~a~qArKil~~~e~~ 349 (422)
T PF06957_consen 335 VAEQARKILQACERN 349 (422)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhcC
No 461
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.69 E-value=2.2e+02 Score=22.50 Aligned_cols=88 Identities=17% Similarity=0.002 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHhHh--cCCCC---------CHhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHhhHHHHHH
Q 040279 54 INLNEARYFFGYMTH--MQPSP---------PISSFNLLFGAVAKNRHYDAVISFYRKLVS----IGLLPDFLTLNILIN 118 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~--~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~~ll~ 118 (626)
|-+++|......... ...++ |...+..|..++.+.|+|++++.--+..+. +| ..+...-..-|.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG-EL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG-ELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc-ccccccchhHHH
Confidence 367777666665543 11111 345677788899999999987765555431 12 111111122222
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKN 142 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~ 142 (626)
+..+.+.++...|+.++|+.-|+.
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Confidence 222234455666777777776664
No 462
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.54 E-value=4.1e+02 Score=25.66 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH
Q 040279 489 LEKANDFLLYMEKNGCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLA 556 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 556 (626)
.+++..++..+++. -|+. ..|..+++.....|.++.++.+|++++. .|-.|-.+.-..+++++.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~--agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAIL--AGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHH
Confidence 34556666666553 3443 3455566666667777777777777776 666665555555555554
No 463
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.35 E-value=6.1e+02 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=18.2
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCC
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
+-.-++++.+|.+..+.|.+ ++|-
T Consensus 375 asVLAnd~~kaiqAae~mfK----Lk~P 398 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFK----LKPP 398 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhc----cCCc
Confidence 34457899999999999987 5554
No 464
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.09 E-value=5.8e+02 Score=29.60 Aligned_cols=158 Identities=14% Similarity=0.042 Sum_probs=88.2
Q ss_pred hhhcCCHHHHHH------HHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCccccccHHHHHHH
Q 040279 127 LCVENRIKEATW------LFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD-YENGLISKTNIFSYSII 199 (626)
Q Consensus 127 ~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 199 (626)
...+|.+.+|.+ +++..-..-.++....|..|...+-+.|+.++|+..-.+..-.. ...+...+.+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334555665555 55533322224456678888899999999999988766543211 00111134455566666
Q ss_pred HHHHHhcCCcchHHHHHHHHhhC-----C--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----C--CCChhh
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGR-----G--INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG-----P--RPNLLT 265 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~ 265 (626)
.-.....++...|...+.+.... | -+|...+++.+-..+...++++.|.+.++...... . -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666777888888777776543 1 13333444444444444567777777777665421 1 123334
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 040279 266 FNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~ 284 (626)
+..+.+.+...+++..|..
T Consensus 1102 ~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 5555555555555544443
No 465
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.90 E-value=4.1e+02 Score=25.32 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL-LTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
.|.-+..+.|+..+|.+.|+++.+.-+-.+. .....++.++....-+..+..++.+..+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555778888888888877654211110 12234555665555555555555544443
No 466
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.85 E-value=1.3e+02 Score=26.93 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=48.8
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.....++.+.|.+++++.+..- +.....|..+...-.+.|+++.|.+.+++..+.+
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567889999999999998863 4567889999999999999999999999999877
No 467
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.71 E-value=3.5e+02 Score=24.48 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMV 179 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~ 179 (626)
+...+..|.+.-+|.-|....+++.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKII 157 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhh
Confidence 3445555666666666655555554
No 468
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.26 E-value=4.5e+02 Score=28.99 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=74.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 040279 414 CKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKAN 493 (626)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 493 (626)
...|+++.|++.-..+ .+..+|..|......+|+.+-|+..|++... |+.|--.|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 4457777776654433 2566777777777777777777777776543 333334455567776666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 494 DFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
++.+-+... .|..+ ......-.|+.++-.++++..-. .| ..|. .-...|.-++|.++.++...
T Consensus 719 Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~g~-----~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENGGQ-----LP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhcCc-----cc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 655554432 23221 11222345777777777777644 22 1111 12346777888888888754
No 469
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.74 E-value=5.4e+02 Score=26.05 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
+++-.++++.+.+.| .......-++.|.+.+++++|...+++-.+
T Consensus 70 ~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 70 LDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred HHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhh
Confidence 445555555555543 112333345555666666666666555544
No 470
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.56 E-value=5.3e+02 Score=25.92 Aligned_cols=159 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhHhc---CC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh---------
Q 040279 55 NLNEARYFFGYMTHM---QP-SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG--------- 121 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~--------- 121 (626)
+.++...++...... +. ..+......++... .|+...++.+++.+...+...+......++....
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred --hhhhhhhhc---CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCccccc
Q 040279 122 --NKERGLCVE---NRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTG-----NLSVALRLHKKMVSGDYENGLISKT 191 (626)
Q Consensus 122 --~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~ 191 (626)
.++.++.+. ++.+.|+.++..|+..|..|....-..++.++-.-| ....|...++.....| .|.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g------~pe 303 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIG------MPE 303 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhC------CcH
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 192 NIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
........+-.++..-+-..+...++...+
T Consensus 304 ~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 304 GRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.93 E-value=4.5e+02 Score=24.91 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 319 EIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
++++.+...++.|.-.++..+.-.+.+.-.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555566555555555555555566666666666554
No 472
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.88 E-value=5.1e+02 Score=25.51 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHhHhcCCCC-CHhhHHHHHHHHH-hcCChhHHHHH--HHHHHHCCCCCCHhhHHHHHHhhh---------
Q 040279 55 NLNEARYFFGYMTHMQPSP-PISSFNLLFGAVA-KNRHYDAVISF--YRKLVSIGLLPDFLTLNILINCFG--------- 121 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~--~~~~~~~g~~p~~~~~~~ll~~~~--------- 121 (626)
|+..-.+++..+...-... +=...|..+..+. +.|+...|+.. .+-|.-..-.||..+-..++....
T Consensus 47 D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyv 126 (439)
T KOG1498|consen 47 DMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYV 126 (439)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEE
Confidence 4555555555554432221 1233444443333 56666666532 122221122566666666666554
Q ss_pred ---------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH------------HHHHHHhcCChHHHHHHHHHHHh
Q 040279 122 ---------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT------------LINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 122 ---------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
-+...+-.+|+..+|..++.+.. +.||.+ -++.|...+|+-.|.-+-.++..
T Consensus 127 EvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~ 199 (439)
T KOG1498|consen 127 EVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINK 199 (439)
T ss_pred eehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 44566677899999988887653 223332 25667777888888777776665
Q ss_pred CCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC
Q 040279 181 GDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR 222 (626)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (626)
.-++.+.....-...|..++......+.+=.+-+.|+.+-..
T Consensus 200 K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 200 KFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 443321111112233555555555555555555555555443
No 473
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.42 E-value=3e+02 Score=22.72 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040279 336 YNILINGYCKILNVEEAMSLYRQIISNG-----VRQTVITYNTLLSGLFQAGQ-AGYAQKLFDEMKLYNVEPDLSTYNIL 409 (626)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 409 (626)
.+.++.-....+++...+.+++.+.... -..+...|..++.+.....- --.+..+|.-+.+.+.+.++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444555555555555542210 01234455566665544443 23345556666655566666666666
Q ss_pred HHHHHhc
Q 040279 410 IDGLCKN 416 (626)
Q Consensus 410 ~~~~~~~ 416 (626)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665543
No 474
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.01 E-value=2.5e+02 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 566777777777777777777777655
No 475
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.01 E-value=4.9e+02 Score=24.70 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040279 354 SLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLC 414 (626)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (626)
++|+.+.+.++.|....+.-+.-.+.+.-.+.+++.+|+.+.. |..-+..++..|+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 4566666666666666666666666666666667777766654 2222555555444
No 476
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.00 E-value=9.1e+02 Score=27.86 Aligned_cols=125 Identities=13% Similarity=0.036 Sum_probs=69.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040279 265 TFNVMIDCLCKGGKINEANGLLELMIQRGLNPD----RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILI 340 (626)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (626)
-|..+++.+-..+..+.+.++-...++. ++++ ..+++.+.+.....|.+-+|...+-+.... ..-..+...++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 3556677777777777777776666554 2222 345667777777778877776554332211 11123445555
Q ss_pred HHHHhcCChH------------HHHH-HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 040279 341 NGYCKILNVE------------EAMS-LYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFD 392 (626)
Q Consensus 341 ~~~~~~~~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 392 (626)
..+...|.++ +... +++..-+.........|+.|-..+...+++.+|-.++-
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 5566666543 3344 33333333222233456666666677888887765543
No 477
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.92 E-value=5.1e+02 Score=24.92 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=9.7
Q ss_pred HHHHHccCCHhHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~ 571 (626)
+..+.+.|+.++|..-|+++
T Consensus 372 adlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 372 ADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 34444455555555555444
No 478
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.45 E-value=4.8e+02 Score=24.15 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=48.1
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc
Q 040279 150 PDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229 (626)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (626)
-++..+..+...+.+.|++.+|...|-... .++...+..++......|...++-- .
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----------~~~~~~~~~ll~~~~~~~~~~e~dl--------------f 143 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT----------DPSAFAYVMLLEEWSTKGYPSEADL--------------F 143 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----------HHHHHHHHHHHHHHHHHTSS--HHH--------------H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC----------ChhHHHHHHHHHHHHHhcCCcchhH--------------H
Confidence 367788999999999999999998775431 2333333334444444444443311 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
. ...+-.|...++...|...+....+.
T Consensus 144 i-~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 144 I-ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 12233466778888888888776643
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.80 E-value=3.8e+02 Score=22.78 Aligned_cols=34 Identities=3% Similarity=-0.118 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK 345 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (626)
++.-.|.++++.+.+.+...+..|...-+..+.+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e 72 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLE 72 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHH
Confidence 3344444455554444433343333333333333
No 480
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.72 E-value=4.3e+02 Score=28.00 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHH------HHHHHHHhcccCCCCCCHhHHHHH
Q 040279 408 ILIDGLCKNNCVQEAVKLFHMLEMN--KFEFGIEIFNCLIDGLCKAGRLD------NAWELFHKLPQKGLVPTVVTYSIM 479 (626)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 479 (626)
++..+|...|++..+.++++.+... +-+.-...+|..++...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888877743 22334556777777777887654 3344444433 33466777766
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 040279 480 IHGLCRKGKLEKANDFLLYME 500 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~ 500 (626)
..+-..--.-.-...++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 655443222233333444443
No 481
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.70 E-value=2.7e+02 Score=21.07 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTF 548 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 548 (626)
.+.++++...+....+-....|.-.|.+.|+.+.|.+-|+.=.. +-|...+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa----lFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA----LFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh----hCccchhH
Confidence 33444444443222222333444556666666666666655444 55554444
No 482
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.56 E-value=5.3e+02 Score=24.39 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=36.3
Q ss_pred hcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH-HhcccCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 415 KNNCVQEAVKLF-HMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELF-HKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 415 ~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+...+++..... ++|.+.+ -|+..+...+-.+.....+|.+-.++. +..++ ...+|.-|+.+++.+|+.+-.
T Consensus 267 ~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 334455555554 3555555 345443333333333334443322222 22221 345678888888888877654
Q ss_pred H
Q 040279 493 N 493 (626)
Q Consensus 493 ~ 493 (626)
+
T Consensus 341 L 341 (412)
T KOG2297|consen 341 L 341 (412)
T ss_pred H
Confidence 4
No 483
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.24 E-value=1.2e+02 Score=20.85 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=39.6
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE 206 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (626)
.|....++.++...++..-.++++..+.++.+.+ .-+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-------~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-------SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999999988 45667777777766654
No 484
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.05 E-value=7.8e+02 Score=26.10 Aligned_cols=76 Identities=9% Similarity=0.006 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 353 MSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
....+.++..-...+...-..++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.+.|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444332223444455566666777777777766666543211 22345555666666777666555555444
No 485
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.98 E-value=3.3e+02 Score=21.76 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 246 EVNGLFIEMLDLGPRP-NLLTFNVMIDCLCKGGKINEANGLLEL 288 (626)
Q Consensus 246 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (626)
++.++|..|...|+-. -...|......+...|++++|..+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666554432 233555566666666666666666654
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.57 E-value=1.7e+02 Score=20.17 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=21.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
....++.++..++...-.++++..+.++.+.| ..+..+|.--++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555555554 23444444433333
No 487
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.29 E-value=5.8e+02 Score=24.37 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHH--HHHHHHHHhcCCc
Q 040279 132 RIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY--SIIIDSLCKEGLV 209 (626)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~ 209 (626)
-..+|.++|++.++.+ ..+|+. -..+...|. ..+.+.+++ .++.+| ..|.-+..+.|+.
T Consensus 231 Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~------~~da~~rRD--------tnvl~YIKRRLAMCARklGrl 291 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSP------QHEAQLRRD--------TNVLVYIKRRLAMCARKLGRL 291 (556)
T ss_pred hHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhcc------chhhhhhcc--------cchhhHHHHHHHHHHHHhhhH
Confidence 4667888888877653 223331 112222222 222333333 334344 3455566678999
Q ss_pred chHHHHHHHHhhCCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 210 DKAKELFLEMKGRGINPAV---VVCTTLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 210 ~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
.+|.+.|+++.+. .|-. .+...|+.++....-+.++..++-+.-+
T Consensus 292 rEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 292 REAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999988765 2211 2234566677666666666666655543
No 488
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.04 E-value=5.7e+02 Score=24.17 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 198 IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
.++....+.++..+..+.++.+.. ...-...+......|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555555555555555555542 23334455666677888888877777654
No 489
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.87 E-value=1e+03 Score=27.09 Aligned_cols=260 Identities=8% Similarity=-0.027 Sum_probs=142.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 040279 260 RPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNIL 339 (626)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (626)
.++...-...+..+.+.+..+ +...+..+.+ .++..+-...+.++.+.+........+..+... +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 345556666666666666533 4444444443 234444444445444443221122333333332 355555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 340 INGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCV 419 (626)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 419 (626)
+.++...+..+ .. .+-+..+ .+|...-...+.++.+.+..+. +..... .++...-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55555433211 12 2222332 2455555555666655544322 222222 45666666677777776654
Q ss_pred HH-HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 420 QE-AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLY 498 (626)
Q Consensus 420 ~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (626)
+. +...+..+.. .++..+-...+.++...|..+.+...+..+.+. ++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 3344444443 356778888888898888876655555555542 466666667777777765 566677777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040279 499 MEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVD 553 (626)
Q Consensus 499 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 553 (626)
+.+ .|+...-...+.++.+.+....+...+..+.+ .+|..+-.....
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~-----D~d~~Vr~~A~~ 892 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT-----DSDADVRAYARR 892 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 775 56777777777788775444567777777765 445544433333
No 490
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=25.82 E-value=7.6e+02 Score=25.57 Aligned_cols=104 Identities=9% Similarity=0.100 Sum_probs=66.0
Q ss_pred HHHHHHHhHhcCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHH
Q 040279 59 ARYFFGYMTHMQPSPPISSFNLL-FGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEAT 137 (626)
Q Consensus 59 A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~ 137 (626)
+..++.++-...+. +-..|..+ +.++.+.|+...|..++.++.. .+.|.....-.+|.+ .......++..|.
T Consensus 47 s~~yl~qa~qs~~~-~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~a-----el~la~~q~~~Al 119 (604)
T COG3107 47 SQFYLQQAQQSSGE-QQNDWLLLAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAA-----ELALAQKQPAAAL 119 (604)
T ss_pred HHHHHHHHhhcCch-hhhhHHHHHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHH-----HHHHhccChHHHH
Confidence 34444455433222 33445444 3677889999999999998876 556777777777653 4556677888999
Q ss_pred HHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChH
Q 040279 138 WLFKNMIAFGVRPD--VITYGTLINGFCRTGNLS 169 (626)
Q Consensus 138 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 169 (626)
+.+.+......+++ ...|...+.++...|+.=
T Consensus 120 ~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~~~~~ 153 (604)
T COG3107 120 QQLAKLLPADLSQNQQARYYQARADALEARGDSI 153 (604)
T ss_pred HHHhhcchhhcCHHHHHHHHHHHHHHHhcccchH
Confidence 88888776655555 233555555555555433
No 491
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.45 E-value=3.9e+02 Score=22.05 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhcCCCCChhh
Q 040279 314 IDTAREIFLSMHSKGCKHTVVS 335 (626)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~ 335 (626)
.-.|.++++.+.+.+...+..|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aT 54 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLAT 54 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHH
Confidence 3444444444444433333333
No 492
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.39 E-value=9.6e+02 Score=26.63 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=29.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPD--VITYGTLINGFCRTGNLSVALRLHKKM 178 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 178 (626)
+.|...|++++|+++-+.- |+ ..++..-...+.+.+++..|-+++.++
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4566677777777655432 22 123334455666677777777777766
No 493
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.32 E-value=6.9e+02 Score=24.96 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=38.1
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCC------C-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFG------V-RPDVITYGTLINGFCRTGNLSVALRLHKKMV 179 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 179 (626)
.+.+.++-.||+..|+++++.+.-.. + .-...++-.++-+|.-.+++.+|++.|..++
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777888888888887653221 1 1133455566677777788888888887764
No 494
>PHA02875 ankyrin repeat protein; Provisional
Probab=24.84 E-value=7e+02 Score=24.87 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=79.5
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVV--VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (626)
+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.-.......+.... ..+...+..|
T Consensus 39 L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~ 113 (413)
T PHA02875 39 IKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILK 113 (413)
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhC
Confidence 34445566654 444455555444432 1223455566778877665555422110000011111 2333344566
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHH
Q 040279 278 KINEANGLLELMIQRGLNPDRFT--YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHT---VVSYNILINGYCKILNVEEA 352 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A 352 (626)
+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.|..++ ..-.+.+.. .+..|+.+
T Consensus 114 ~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~~-A~~~g~~e-- 182 (413)
T PHA02875 114 KLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLII-AMAKGDIA-- 182 (413)
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHHH-HHHcCCHH--
Confidence 653 4444555565554321 122344455667765544433 3433222 222233332 33445544
Q ss_pred HHHHHHHHHCCCCCChhh---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 040279 353 MSLYRQIISNGVRQTVIT---YNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD 402 (626)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 402 (626)
+.+.+.+.|..++... ....+......|+.+ +.+.+.+.|..++
T Consensus 183 --iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 183 --ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred --HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 4444555665554322 123344344556554 3344445555554
No 495
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=24.58 E-value=1e+03 Score=26.73 Aligned_cols=130 Identities=19% Similarity=0.144 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 419 VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLY 498 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (626)
...|.++-..|... -..+++++.+.|..-.-.+.++...+ -|.. ......+.-.+.|.+
T Consensus 1163 r~da~klk~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e----~dae---------ee~s~ld~~~e~y~e 1221 (1304)
T KOG1114|consen 1163 RPDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKE----QDAE---------EELSKLDSYNENYQE 1221 (1304)
T ss_pred cchHHHHHHHHHHH--------HHHHHHHHHHhhhHHhhhhhhccccc----ccch---------hhhhhhhhHHHHHHH
Confidence 34466666666543 25677777766643222222222222 1211 111234455566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 499 MEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 499 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
+..---..|..++..-.+.+...|++-.+.+++.++++ +.+-.++...+..++..+...|.-. -..+++++
T Consensus 1222 l~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~klie-e~~es~t~~~~~~~~el~~~Lgw~H-~~t~~~~~ 1292 (1304)
T KOG1114|consen 1222 LLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIE-ENGESATKDVAVLLAELLENLGWNH-LATFVKNW 1292 (1304)
T ss_pred HHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHhCchH-hHHHHhhh
Confidence 65531133556666666777788999999999999887 5566677777877888887777543 33344444
No 496
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=6e+02 Score=23.93 Aligned_cols=130 Identities=15% Similarity=0.064 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHhHhcCCCC-CHhhHHHHHHH-HHhcCChhHHHHHHH--HHHH-CCCCCCHhhHHHHHHhhh-------
Q 040279 54 INLNEARYFFGYMTHMQPSP-PISSFNLLFGA-VAKNRHYDAVISFYR--KLVS-IGLLPDFLTLNILINCFG------- 121 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~--~~~~-~g~~p~~~~~~~ll~~~~------- 121 (626)
.|+..-.++|..+...-... +-.-.+..+.. ..+.|+...++...- -|.. .|.. |..+...++....
T Consensus 46 sD~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~kKhGQlk~sI~~MIq~vmEylKg~~-dl~t~i~~ietlr~VtEgkI 124 (439)
T COG5071 46 SDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGID-DLKTKINLIETLRTVTEGKI 124 (439)
T ss_pred ccHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHcchHHHHHHHHHHHHHHhccCcc-cccchHhHHHHHHHHhcCce
Confidence 46777777777765433221 12324444444 347788887764322 2221 1222 3333333333222
Q ss_pred -----------hhhhhhhhcCCHHHHHHHHHHHHHC--C-CCCCHhH-H-HHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 040279 122 -----------NKERGLCVENRIKEATWLFKNMIAF--G-VRPDVIT-Y-GTLINGFCRTGNLSVALRLHKKMVSGDYE 184 (626)
Q Consensus 122 -----------~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~~-~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 184 (626)
.+.+.+-.+|+.+.|..++-...-. | +..+... | .--++.+.-.+++-.|--+-.++.+.-++
T Consensus 125 FvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe 203 (439)
T COG5071 125 FVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFE 203 (439)
T ss_pred EEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Confidence 3445666778888888777543211 1 0111111 1 11256677788888888877777765543
No 497
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=6.6e+02 Score=24.21 Aligned_cols=56 Identities=20% Similarity=0.093 Sum_probs=28.8
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCC-CCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 446 DGLCKAGRLDNAWELFHKLPQKGL-VPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
+-|.+..++..|...|.+-+.... .|| ...|+.-..+-...|++..|+.=......
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666655544211 122 34455555555555666666665555555
No 498
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.64 E-value=1.7e+02 Score=17.45 Aligned_cols=28 Identities=4% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.+|..|+..-...+++++|.+-|++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567777888888888888888887753
No 499
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=23.53 E-value=4.4e+02 Score=22.95 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=6.5
Q ss_pred HHcCCHHHHHHHHHhc
Q 040279 449 CKAGRLDNAWELFHKL 464 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~ 464 (626)
.+...+|.++.-++++
T Consensus 46 ~K~~~ld~vetdL~kl 61 (210)
T KOG1662|consen 46 VKNSKLDQVETDLNKL 61 (210)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 3334444444444433
No 500
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.44 E-value=3.9e+02 Score=21.39 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHH
Q 040279 527 VVELLHKMAEPERNLVPDD-TTFSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
..++|.-|.. .+|--.. .-|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~--~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYS--KGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHH--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455666655 4444432 334555556666666666666664
Done!