Query 040279
Match_columns 626
No_of_seqs 676 out of 4125
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 10:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.7E-41 1.3E-45 356.1 40.1 491 55-572 68-577 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9E-40 3.1E-44 345.4 39.6 486 39-556 85-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-28 8.3E-33 243.0 45.6 383 158-560 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.1E-28 1.7E-32 240.7 46.1 383 124-523 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.9E-32 241.4 24.2 205 211-415 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.3E-27 4.4E-32 241.0 24.3 212 282-519 9-221 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.7E-25 9.4E-30 230.0 34.8 431 123-572 12-476 (514)
8 2gw1_A Mitochondrial precursor 99.9 1E-24 3.5E-29 225.7 38.9 446 75-547 6-484 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.3E-23 7.9E-28 216.8 36.9 428 120-572 28-489 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 9.4E-23 3.2E-27 207.1 38.6 317 190-515 23-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.1E-23 1E-27 215.9 35.7 439 75-546 25-496 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 2.4E-22 8.1E-27 204.1 39.4 329 137-482 12-372 (450)
13 2xm6_A Protein corresponding t 99.9 3.6E-18 1.2E-22 174.8 49.4 362 136-536 26-431 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 2.1E-19 7.1E-24 176.3 38.3 330 192-556 2-351 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 7.3E-19 2.5E-23 172.4 38.2 333 151-520 2-352 (359)
16 2xm6_A Protein corresponding t 99.9 1.9E-17 6.6E-22 169.3 50.1 363 171-574 26-432 (490)
17 3hym_B Cell division cycle pro 99.9 8.4E-19 2.9E-23 169.8 34.6 291 262-562 21-322 (330)
18 2ooe_A Cleavage stimulation fa 99.9 1.2E-17 4E-22 172.8 43.7 409 150-573 11-491 (530)
19 3hym_B Cell division cycle pro 99.9 2.5E-18 8.6E-23 166.4 33.9 293 225-524 19-321 (330)
20 2ooe_A Cleavage stimulation fa 99.8 5.3E-17 1.8E-21 167.9 43.2 426 63-536 2-491 (530)
21 1fch_A Peroxisomal targeting s 99.8 8E-19 2.7E-23 172.9 24.0 307 237-572 34-357 (368)
22 1xi4_A Clathrin heavy chain; a 99.8 7E-15 2.4E-19 157.2 50.9 360 152-569 985-1379(1630)
23 1xi4_A Clathrin heavy chain; a 99.8 8.1E-15 2.8E-19 156.7 51.0 420 74-570 984-1441(1630)
24 1fch_A Peroxisomal targeting s 99.8 6.9E-18 2.4E-22 166.1 26.1 309 202-536 34-358 (368)
25 4eqf_A PEX5-related protein; a 99.8 3.2E-18 1.1E-22 168.3 23.6 263 301-571 68-353 (365)
26 1b89_A Protein (clathrin heavy 99.8 6.4E-18 2.2E-22 161.9 20.9 381 128-570 14-413 (449)
27 3cv0_A Peroxisome targeting si 99.8 6.1E-17 2.1E-21 156.4 26.2 278 263-572 21-313 (327)
28 4g1t_A Interferon-induced prot 99.8 4.4E-16 1.5E-20 158.8 33.9 363 190-572 48-457 (472)
29 4g1t_A Interferon-induced prot 99.8 4.8E-16 1.6E-20 158.6 33.2 369 151-536 50-458 (472)
30 3mkr_A Coatomer subunit epsilo 99.8 7.7E-17 2.6E-21 151.8 25.1 273 272-567 8-287 (291)
31 4eqf_A PEX5-related protein; a 99.8 7.1E-17 2.4E-21 158.7 25.9 269 228-534 65-353 (365)
32 1b89_A Protein (clathrin heavy 99.8 3.2E-16 1.1E-20 150.3 29.3 345 54-463 17-368 (449)
33 3cv0_A Peroxisome targeting si 99.8 1.8E-16 6.3E-21 153.0 25.9 282 227-536 20-314 (327)
34 3mkr_A Coatomer subunit epsilo 99.8 2.1E-16 7.3E-21 148.7 24.0 251 305-572 6-262 (291)
35 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-15 4.9E-20 152.9 23.2 337 210-575 55-422 (452)
36 3e4b_A ALGK; tetratricopeptide 99.7 9.2E-15 3.2E-19 147.0 28.2 346 199-575 9-388 (452)
37 2pl2_A Hypothetical conserved 99.7 3.3E-15 1.1E-19 134.3 21.0 198 366-572 3-212 (217)
38 3uq3_A Heat shock protein STI1 99.7 1.8E-14 6.1E-19 133.7 25.4 222 301-536 8-235 (258)
39 3uq3_A Heat shock protein STI1 99.7 1.8E-14 6.3E-19 133.6 23.8 224 333-573 5-235 (258)
40 2pl2_A Hypothetical conserved 99.7 1.1E-14 3.8E-19 130.8 20.8 200 149-360 2-212 (217)
41 3u4t_A TPR repeat-containing p 99.7 7.4E-14 2.5E-18 130.7 27.3 234 334-572 4-248 (272)
42 3spa_A Mtrpol, DNA-directed RN 99.6 4.4E-16 1.5E-20 161.3 12.1 166 190-360 124-308 (1134)
43 1ouv_A Conserved hypothetical 99.6 7.2E-13 2.5E-17 124.0 31.6 221 332-572 5-249 (273)
44 3u4t_A TPR repeat-containing p 99.6 6.1E-14 2.1E-18 131.3 23.4 247 301-555 6-265 (272)
45 3spa_A Mtrpol, DNA-directed RN 99.6 8.2E-16 2.8E-20 159.3 9.9 116 403-518 127-246 (1134)
46 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.6E-17 121.5 31.7 221 298-536 6-250 (273)
47 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.7E-16 127.3 41.9 427 134-573 49-569 (679)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-14 1.1E-18 133.3 19.2 155 124-290 50-204 (275)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.9E-14 1.3E-18 132.9 18.7 250 126-391 14-269 (275)
50 2h6f_A Protein farnesyltransfe 99.6 2.8E-13 9.6E-18 131.7 25.1 248 75-343 97-363 (382)
51 2ho1_A Type 4 fimbrial biogene 99.6 5.3E-13 1.8E-17 123.3 25.9 197 369-572 38-236 (252)
52 4e6h_A MRNA 3'-END-processing 99.6 4.3E-11 1.5E-15 124.2 42.5 443 56-518 48-584 (679)
53 2ho1_A Type 4 fimbrial biogene 99.6 5E-13 1.7E-17 123.4 24.8 197 336-536 40-237 (252)
54 2q7f_A YRRB protein; TPR, prot 99.6 8.9E-14 3E-18 127.7 19.3 199 333-536 23-221 (243)
55 2h6f_A Protein farnesyltransfe 99.6 3.5E-13 1.2E-17 131.0 24.2 246 300-556 99-364 (382)
56 2vq2_A PILW, putative fimbrial 99.6 9E-13 3.1E-17 119.2 24.6 200 333-536 8-210 (225)
57 2q7f_A YRRB protein; TPR, prot 99.6 1.5E-13 5.2E-18 126.1 19.6 198 367-572 22-220 (243)
58 2vq2_A PILW, putative fimbrial 99.6 1.2E-12 4.1E-17 118.4 24.1 199 367-572 7-209 (225)
59 4a1s_A PINS, partner of inscut 99.5 1E-13 3.6E-18 138.4 17.3 272 266-573 51-371 (411)
60 3sf4_A G-protein-signaling mod 99.5 4.2E-13 1.4E-17 133.7 20.1 279 41-325 12-334 (406)
61 4a1s_A PINS, partner of inscut 99.5 2.9E-13 1E-17 135.1 18.8 241 44-291 54-331 (411)
62 3sf4_A G-protein-signaling mod 99.5 4.1E-13 1.4E-17 133.8 19.7 281 262-574 8-336 (406)
63 2ond_A Cleavage stimulation fa 99.5 1.1E-11 3.6E-16 118.1 28.4 247 350-616 33-299 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 1E-12 3.4E-17 114.8 19.7 164 402-572 4-168 (184)
65 3ulq_A Response regulator aspa 99.5 1.9E-12 6.5E-17 127.8 23.9 230 339-573 109-367 (383)
66 3ro2_A PINS homolog, G-protein 99.5 5.5E-13 1.9E-17 128.9 17.5 151 419-573 159-331 (338)
67 3vtx_A MAMA; tetratricopeptide 99.5 4.1E-12 1.4E-16 110.8 21.3 171 367-545 4-174 (184)
68 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.6E-17 126.9 18.9 241 45-290 12-290 (338)
69 3ulq_A Response regulator aspa 99.4 7.1E-12 2.4E-16 123.6 21.4 168 158-326 109-292 (383)
70 4abn_A Tetratricopeptide repea 99.4 2.8E-12 9.6E-17 129.7 18.3 195 367-570 101-317 (474)
71 2ond_A Cleavage stimulation fa 99.4 1.1E-10 3.9E-15 110.9 28.5 218 169-396 33-269 (308)
72 4abn_A Tetratricopeptide repea 99.4 2.5E-12 8.5E-17 130.1 17.6 213 56-288 84-317 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 2E-12 6.9E-17 123.5 14.7 235 335-573 29-306 (311)
74 1hz4_A MALT regulatory protein 99.4 9.9E-11 3.4E-15 115.0 26.7 269 54-326 28-321 (373)
75 3q15_A PSP28, response regulat 99.4 7.1E-11 2.4E-15 116.1 25.3 229 339-573 107-364 (378)
76 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6.3E-17 123.8 12.0 243 264-536 28-306 (311)
77 4gyw_A UDP-N-acetylglucosamine 99.3 2.8E-11 9.6E-16 127.2 19.5 165 402-573 8-173 (723)
78 3as5_A MAMA; tetratricopeptide 99.3 5.9E-11 2E-15 103.4 18.0 162 404-572 9-171 (186)
79 3q15_A PSP28, response regulat 99.3 1.9E-10 6.3E-15 113.1 23.5 228 305-536 108-364 (378)
80 1hz4_A MALT regulatory protein 99.3 8.7E-10 3E-14 108.2 28.0 200 337-536 97-321 (373)
81 4i17_A Hypothetical protein; T 99.3 1.5E-10 5E-15 104.9 20.3 191 367-572 6-207 (228)
82 4i17_A Hypothetical protein; T 99.3 2E-10 7E-15 103.9 20.3 207 331-553 5-222 (228)
83 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.6E-15 101.1 17.7 163 370-536 10-172 (186)
84 4gyw_A UDP-N-acetylglucosamine 99.3 1.4E-10 4.7E-15 122.0 19.7 168 35-221 6-173 (723)
85 1qqe_A Vesicular transport pro 99.2 5.1E-10 1.7E-14 105.4 19.6 191 378-572 47-267 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 2.4E-10 8.4E-15 107.1 14.8 235 54-292 15-281 (283)
87 2uy1_A Cleavage stimulation fa 99.2 4.4E-08 1.5E-12 98.8 32.1 375 133-574 11-413 (493)
88 1qqe_A Vesicular transport pro 99.2 1.2E-09 4E-14 102.9 18.5 219 55-291 32-268 (292)
89 3edt_B KLC 2, kinesin light ch 99.2 3.4E-10 1.2E-14 106.1 14.7 164 129-292 13-198 (283)
90 3mv2_B Coatomer subunit epsilo 99.1 1.1E-08 3.8E-13 94.0 23.1 185 352-547 85-288 (310)
91 3mv2_B Coatomer subunit epsilo 99.1 6.6E-09 2.3E-13 95.5 21.1 185 387-585 85-286 (310)
92 2uy1_A Cleavage stimulation fa 99.1 8.1E-08 2.8E-12 96.9 30.4 123 405-535 288-411 (493)
93 3urz_A Uncharacterized protein 99.1 1.6E-09 5.6E-14 96.1 15.6 123 444-572 60-184 (208)
94 3qky_A Outer membrane assembly 99.1 3.2E-09 1.1E-13 98.2 17.5 162 405-572 17-222 (261)
95 2r5s_A Uncharacterized protein 99.1 2.5E-09 8.7E-14 92.1 15.5 161 405-573 8-172 (176)
96 3urz_A Uncharacterized protein 99.1 3.2E-09 1.1E-13 94.2 16.4 139 407-553 58-198 (208)
97 2fo7_A Synthetic consensus TPR 99.1 4.9E-09 1.7E-13 85.5 16.1 127 440-572 3-130 (136)
98 2pzi_A Probable serine/threoni 99.1 2E-09 6.8E-14 113.9 16.7 173 379-560 402-583 (681)
99 3qou_A Protein YBBN; thioredox 99.1 5.1E-09 1.7E-13 98.1 17.7 166 400-573 114-283 (287)
100 3qky_A Outer membrane assembly 99.1 3.2E-09 1.1E-13 98.2 16.2 204 332-561 14-248 (261)
101 4ga2_A E3 SUMO-protein ligase 99.1 4.6E-10 1.6E-14 93.7 9.4 143 411-560 5-149 (150)
102 2fo7_A Synthetic consensus TPR 99.0 7.6E-09 2.6E-13 84.3 15.8 128 406-536 4-131 (136)
103 4ga2_A E3 SUMO-protein ligase 99.0 8E-10 2.7E-14 92.2 9.6 146 123-278 3-149 (150)
104 2r5s_A Uncharacterized protein 99.0 3.5E-09 1.2E-13 91.2 13.8 167 38-221 6-172 (176)
105 3qou_A Protein YBBN; thioredox 99.0 6.4E-09 2.2E-13 97.4 16.5 160 44-220 123-282 (287)
106 3rjv_A Putative SEL1 repeat pr 99.0 3.8E-08 1.3E-12 87.5 19.3 160 402-572 17-195 (212)
107 2pzi_A Probable serine/threoni 99.0 3E-09 1E-13 112.5 14.2 161 414-589 402-571 (681)
108 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.8E-13 105.6 18.7 149 417-572 3-155 (568)
109 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.4E-08 1.2E-12 88.8 18.5 206 39-293 5-214 (225)
110 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.2E-08 1.1E-12 89.0 17.8 183 368-573 4-212 (225)
111 3rjv_A Putative SEL1 repeat pr 98.9 5.2E-08 1.8E-12 86.6 18.2 176 135-328 4-198 (212)
112 3dra_A Protein farnesyltransfe 98.9 3.9E-07 1.3E-11 84.7 24.6 217 349-572 49-285 (306)
113 3dra_A Protein farnesyltransfe 98.9 2.4E-06 8.1E-11 79.5 28.9 230 280-514 50-299 (306)
114 4gco_A Protein STI-1; structur 98.9 1.7E-08 5.9E-13 81.0 12.7 95 473-572 13-108 (126)
115 2vsy_A XCC0866; transferase, g 98.9 2.6E-08 8.7E-13 103.6 16.6 153 54-223 3-158 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 3.1E-08 1.1E-12 93.9 15.8 122 55-179 6-142 (307)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 4.1E-08 1.4E-12 93.1 15.7 187 377-566 45-253 (307)
118 4f3v_A ESX-1 secretion system 98.9 6.4E-08 2.2E-12 87.8 15.7 190 54-258 20-238 (282)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.6E-07 5.5E-12 83.5 18.0 127 441-572 9-148 (213)
120 3gyz_A Chaperone protein IPGC; 98.8 9.8E-09 3.3E-13 85.0 9.0 95 473-572 36-131 (151)
121 4gco_A Protein STI-1; structur 98.8 4.3E-08 1.5E-12 78.6 12.3 111 438-554 13-124 (126)
122 3u3w_A Transcriptional activat 98.8 4.2E-07 1.4E-11 85.4 20.4 176 78-255 78-264 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2E-07 6.8E-12 82.9 16.8 130 406-545 9-154 (213)
124 3u3w_A Transcriptional activat 98.8 6.9E-07 2.4E-11 83.9 21.2 165 409-573 81-265 (293)
125 3gyz_A Chaperone protein IPGC; 98.8 3.8E-08 1.3E-12 81.5 10.8 105 436-546 34-138 (151)
126 2qfc_A PLCR protein; TPR, HTH, 98.8 8.3E-07 2.8E-11 83.4 21.2 163 406-572 78-264 (293)
127 1a17_A Serine/threonine protei 98.7 2.8E-07 9.7E-12 78.1 14.8 129 438-572 13-144 (166)
128 2vgx_A Chaperone SYCD; alterna 98.7 4.8E-08 1.6E-12 81.0 8.8 96 472-572 20-116 (148)
129 3q7a_A Farnesyltransferase alp 98.7 6.9E-06 2.4E-10 77.2 23.7 221 347-572 68-329 (349)
130 2qfc_A PLCR protein; TPR, HTH, 98.7 6.3E-07 2.1E-11 84.2 16.9 180 74-255 74-264 (293)
131 2vyi_A SGTA protein; chaperone 98.7 3.6E-07 1.2E-11 73.6 12.7 119 437-561 11-130 (131)
132 1na0_A Designed protein CTPR3; 98.6 7.2E-07 2.5E-11 71.1 14.2 114 438-557 9-123 (125)
133 4f3v_A ESX-1 secretion system 98.6 6.2E-07 2.1E-11 81.3 15.0 198 126-328 16-238 (282)
134 2vgx_A Chaperone SYCD; alterna 98.6 1.7E-07 5.8E-12 77.6 10.6 108 426-536 10-117 (148)
135 1p5q_A FKBP52, FK506-binding p 98.6 4E-07 1.4E-11 87.2 14.6 132 437-573 146-293 (336)
136 2lni_A Stress-induced-phosphop 98.6 4.2E-07 1.4E-11 73.6 12.7 117 437-559 15-132 (133)
137 2c2l_A CHIP, carboxy terminus 98.6 1.9E-07 6.4E-12 87.1 11.7 193 367-573 3-198 (281)
138 3q7a_A Farnesyltransferase alp 98.6 4.3E-05 1.5E-09 71.8 27.2 115 386-502 185-331 (349)
139 1a17_A Serine/threonine protei 98.6 1E-06 3.4E-11 74.6 15.0 128 405-535 15-144 (166)
140 2e2e_A Formate-dependent nitri 98.6 1.5E-07 5.2E-12 80.9 9.9 119 415-536 22-143 (177)
141 2e2e_A Formate-dependent nitri 98.6 3.5E-07 1.2E-11 78.6 12.0 126 125-259 18-146 (177)
142 1p5q_A FKBP52, FK506-binding p 98.6 5.1E-08 1.7E-12 93.5 7.0 156 55-221 128-293 (336)
143 2xcb_A PCRH, regulatory protei 98.6 3E-07 1E-11 75.7 10.5 106 460-572 6-113 (142)
144 3gw4_A Uncharacterized protein 98.6 3.9E-07 1.3E-11 80.3 11.9 164 54-221 6-175 (203)
145 3gw4_A Uncharacterized protein 98.6 6.3E-07 2.2E-11 78.9 12.9 162 128-291 3-175 (203)
146 4gcn_A Protein STI-1; structur 98.6 4.2E-07 1.4E-11 73.0 10.5 96 473-573 8-111 (127)
147 4gcn_A Protein STI-1; structur 98.6 5.7E-07 2E-11 72.1 11.0 108 439-551 9-122 (127)
148 2c2l_A CHIP, carboxy terminus 98.6 4.8E-07 1.7E-11 84.2 12.1 194 332-536 3-198 (281)
149 3upv_A Heat shock protein STI1 98.5 9.6E-07 3.3E-11 70.8 12.2 95 473-572 4-99 (126)
150 1na0_A Designed protein CTPR3; 98.5 2.8E-06 9.7E-11 67.5 14.8 115 403-520 9-123 (125)
151 2lni_A Stress-induced-phosphop 98.5 1.3E-06 4.5E-11 70.6 12.9 96 153-256 17-112 (133)
152 3upv_A Heat shock protein STI1 98.5 1.6E-06 5.4E-11 69.5 12.9 97 438-536 4-100 (126)
153 3dss_A Geranylgeranyl transfer 98.5 8.3E-06 2.9E-10 76.3 19.4 189 419-621 90-316 (331)
154 2fbn_A 70 kDa peptidylprolyl i 98.5 1.1E-07 3.7E-12 83.5 6.3 128 438-571 38-183 (198)
155 2vyi_A SGTA protein; chaperone 98.5 2.2E-06 7.5E-11 68.9 13.8 119 403-524 12-130 (131)
156 3dss_A Geranylgeranyl transfer 98.5 4.8E-05 1.6E-09 71.1 24.2 181 384-572 90-302 (331)
157 1hxi_A PEX5, peroxisome target 98.5 9.1E-07 3.1E-11 70.2 10.9 93 475-572 19-112 (121)
158 1elw_A TPR1-domain of HOP; HOP 98.5 4E-06 1.4E-10 65.9 14.6 109 438-552 4-113 (118)
159 3sz7_A HSC70 cochaperone (SGT) 98.5 1.1E-06 3.8E-11 74.2 12.0 96 439-536 12-107 (164)
160 2kck_A TPR repeat; tetratricop 98.5 1.8E-06 6.3E-11 67.2 11.7 96 472-572 5-104 (112)
161 2xcb_A PCRH, regulatory protei 98.5 4.6E-07 1.6E-11 74.5 8.4 98 437-536 17-114 (142)
162 3q49_B STIP1 homology and U bo 98.4 3.4E-06 1.2E-10 68.6 13.4 98 471-573 7-105 (137)
163 1elr_A TPR2A-domain of HOP; HO 98.4 9.6E-07 3.3E-11 71.1 9.8 111 439-554 5-121 (131)
164 2fbn_A 70 kDa peptidylprolyl i 98.4 1.3E-07 4.6E-12 83.0 4.8 155 55-220 19-184 (198)
165 3q49_B STIP1 homology and U bo 98.4 2.2E-06 7.4E-11 69.8 11.3 99 436-536 7-105 (137)
166 2dba_A Smooth muscle cell asso 98.4 6.2E-06 2.1E-10 68.0 14.2 97 437-536 27-127 (148)
167 4b4t_Q 26S proteasome regulato 98.4 1.9E-05 6.4E-10 78.9 19.6 205 45-255 11-243 (434)
168 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.8E-10 62.6 14.5 110 403-515 4-113 (118)
169 1hxi_A PEX5, peroxisome target 98.3 3.3E-06 1.1E-10 66.9 10.5 99 440-544 19-117 (121)
170 2kck_A TPR repeat; tetratricop 98.3 3.9E-06 1.3E-10 65.2 10.7 98 437-536 5-105 (112)
171 3sz7_A HSC70 cochaperone (SGT) 98.3 5.8E-06 2E-10 69.8 12.4 96 473-573 11-107 (164)
172 2dba_A Smooth muscle cell asso 98.3 1.3E-05 4.5E-10 66.0 13.1 96 471-572 26-126 (148)
173 3ro3_A PINS homolog, G-protein 98.3 4.3E-06 1.5E-10 70.1 10.2 144 75-221 9-157 (164)
174 2xev_A YBGF; tetratricopeptide 98.3 9.7E-06 3.3E-10 65.0 11.6 89 479-572 8-103 (129)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 8.2E-06 2.8E-10 81.8 13.5 127 440-571 270-412 (457)
176 4b4t_Q 26S proteasome regulato 98.2 2.3E-05 8E-10 78.2 16.6 99 474-572 136-243 (434)
177 2hr2_A Hypothetical protein; a 98.2 5.7E-06 1.9E-10 67.5 9.7 92 475-572 13-129 (159)
178 3ro3_A PINS homolog, G-protein 98.2 5.3E-06 1.8E-10 69.6 9.8 135 439-573 10-157 (164)
179 3rkv_A Putative peptidylprolyl 98.2 6.8E-06 2.3E-10 69.2 10.1 97 439-536 12-125 (162)
180 1elr_A TPR2A-domain of HOP; HO 98.2 1.1E-05 3.9E-10 64.6 11.2 112 404-518 5-122 (131)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1E-06 3.5E-11 88.3 5.7 155 55-220 249-413 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.2 1.1E-05 3.6E-10 78.2 12.4 91 472-567 272-363 (370)
183 2xev_A YBGF; tetratricopeptide 98.2 2.4E-05 8.2E-10 62.7 12.2 92 443-536 7-104 (129)
184 1dce_A Protein (RAB geranylger 98.2 7.7E-05 2.6E-09 76.4 18.7 149 417-572 43-219 (567)
185 3rkv_A Putative peptidylprolyl 98.2 1.6E-05 5.3E-10 66.9 11.4 99 403-502 11-126 (162)
186 1wao_1 Serine/threonine protei 98.1 5.9E-06 2E-10 83.2 9.7 122 122-252 11-134 (477)
187 3k9i_A BH0479 protein; putativ 98.1 3.2E-06 1.1E-10 66.6 5.9 85 451-536 3-89 (117)
188 2if4_A ATFKBP42; FKBP-like, al 98.1 5.3E-06 1.8E-10 79.4 8.4 145 404-572 180-326 (338)
189 1wao_1 Serine/threonine protei 98.1 7.1E-06 2.4E-10 82.5 9.1 158 411-571 14-194 (477)
190 3k9i_A BH0479 protein; putativ 98.1 3.3E-06 1.1E-10 66.5 5.2 85 485-573 2-89 (117)
191 2hr2_A Hypothetical protein; a 98.1 1.5E-05 5.3E-10 65.0 8.8 94 441-536 14-130 (159)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 8.5E-06 2.9E-10 78.0 8.4 150 439-615 180-334 (338)
193 1dce_A Protein (RAB geranylger 98.1 7.6E-05 2.6E-09 76.5 15.9 171 385-563 46-244 (567)
194 2l6j_A TPR repeat-containing p 98.0 4.8E-06 1.6E-10 64.7 5.4 94 472-570 3-103 (111)
195 1ihg_A Cyclophilin 40; ppiase 98.0 7.9E-05 2.7E-09 72.1 13.5 139 369-529 224-362 (370)
196 1zu2_A Mitochondrial import re 97.9 6.8E-06 2.3E-10 66.9 4.0 89 485-585 14-124 (158)
197 1klx_A Cysteine rich protein B 97.8 0.00027 9.4E-09 57.2 12.4 107 453-572 10-124 (138)
198 3n71_A Histone lysine methyltr 97.8 0.00012 4E-09 73.2 12.0 128 448-575 319-465 (490)
199 1klx_A Cysteine rich protein B 97.8 0.00034 1.2E-08 56.6 12.6 113 129-258 7-127 (138)
200 3n71_A Histone lysine methyltr 97.8 4.3E-05 1.5E-09 76.3 8.6 134 85-221 319-463 (490)
201 1na3_A Designed protein CTPR2; 97.8 0.00015 5.3E-09 53.4 9.8 81 473-558 9-90 (91)
202 1zu2_A Mitochondrial import re 97.8 3.6E-05 1.2E-09 62.6 6.2 96 451-552 15-131 (158)
203 2kat_A Uncharacterized protein 97.7 0.00018 6E-09 56.2 9.1 79 456-536 3-81 (115)
204 2kat_A Uncharacterized protein 97.7 0.00015 5E-09 56.6 8.7 78 422-501 4-81 (115)
205 2l6j_A TPR repeat-containing p 97.6 0.00019 6.4E-09 55.4 8.3 62 507-572 3-65 (111)
206 3ma5_A Tetratricopeptide repea 97.6 0.00031 1.1E-08 53.0 8.5 64 472-536 6-69 (100)
207 1na3_A Designed protein CTPR2; 97.5 0.00069 2.3E-08 49.8 9.7 81 438-520 9-89 (91)
208 3ma5_A Tetratricopeptide repea 97.5 0.00046 1.6E-08 52.1 8.0 65 505-573 4-69 (100)
209 3ly7_A Transcriptional activat 97.3 0.0054 1.8E-07 57.6 14.1 76 470-551 274-349 (372)
210 2kc7_A BFR218_protein; tetratr 97.1 0.00054 1.8E-08 51.5 5.0 57 479-536 6-63 (99)
211 1pc2_A Mitochondria fission pr 96.9 0.0047 1.6E-07 49.6 9.1 80 455-536 15-99 (152)
212 3ly7_A Transcriptional activat 96.9 0.011 3.9E-07 55.4 12.5 49 149-204 191-244 (372)
213 3bee_A Putative YFRE protein; 96.8 0.012 4E-07 43.3 9.9 79 35-116 3-82 (93)
214 3qwp_A SET and MYND domain-con 96.8 0.0063 2.2E-07 59.7 10.8 97 81-180 293-399 (429)
215 3bee_A Putative YFRE protein; 96.8 0.023 7.8E-07 41.7 11.1 65 471-536 4-71 (93)
216 3qww_A SET and MYND domain-con 96.8 0.0028 9.5E-08 62.1 7.9 91 87-180 310-410 (433)
217 3qww_A SET and MYND domain-con 96.7 0.0054 1.8E-07 60.1 9.0 64 473-536 340-410 (433)
218 3mkq_B Coatomer subunit alpha; 96.6 0.23 7.7E-06 41.0 17.7 128 412-571 14-141 (177)
219 2kc7_A BFR218_protein; tetratr 96.6 0.012 4E-07 43.8 9.0 58 124-182 7-65 (99)
220 1pc2_A Mitochondria fission pr 96.5 0.019 6.3E-07 46.2 9.3 80 490-574 15-100 (152)
221 3qwp_A SET and MYND domain-con 96.4 0.016 5.6E-07 56.8 10.7 99 158-256 293-399 (429)
222 3u64_A Protein TP_0956; tetrat 96.4 0.15 5E-06 45.9 15.4 96 168-268 179-282 (301)
223 3mkq_A Coatomer beta'-subunit; 96.3 0.15 5.3E-06 55.0 19.1 131 372-535 633-763 (814)
224 3u64_A Protein TP_0956; tetrat 96.3 0.11 3.9E-06 46.6 14.2 97 130-234 176-283 (301)
225 2v5f_A Prolyl 4-hydroxylase su 96.2 0.04 1.4E-06 41.5 9.6 70 472-545 4-79 (104)
226 3lvg_A Clathrin heavy chain 1; 96.1 9.9E-06 3.4E-10 77.1 -13.0 424 40-532 56-536 (624)
227 3mkq_B Coatomer subunit alpha; 96.1 0.34 1.2E-05 39.9 15.2 126 128-289 16-141 (177)
228 4h7y_A Dual specificity protei 96.0 0.18 6E-06 39.9 12.4 107 73-182 11-124 (161)
229 3mkq_A Coatomer beta'-subunit; 96.0 0.14 4.7E-06 55.4 16.7 160 377-571 608-775 (814)
230 2v5f_A Prolyl 4-hydroxylase su 96.0 0.033 1.1E-06 42.0 8.2 62 121-182 9-76 (104)
231 1wy6_A Hypothetical protein ST 95.9 0.45 1.5E-05 36.8 15.0 138 345-504 19-156 (172)
232 1nzn_A CGI-135 protein, fissio 95.7 0.092 3.2E-06 40.4 9.6 81 488-572 16-101 (126)
233 1wy6_A Hypothetical protein ST 95.4 0.68 2.3E-05 35.8 13.5 117 416-536 20-153 (172)
234 3lvg_A Clathrin heavy chain 1; 95.1 0.00024 8.3E-09 67.8 -8.0 237 124-388 61-324 (624)
235 1nzn_A CGI-135 protein, fissio 94.9 0.14 4.8E-06 39.4 8.3 87 452-544 15-106 (126)
236 4h7y_A Dual specificity protei 94.5 0.46 1.6E-05 37.6 10.4 107 189-297 9-128 (161)
237 3ffl_A Anaphase-promoting comp 93.2 0.25 8.7E-06 39.9 7.0 116 441-571 23-148 (167)
238 3ffl_A Anaphase-promoting comp 92.3 1.3 4.4E-05 35.9 9.8 108 73-180 18-150 (167)
239 4b4t_P 26S proteasome regulato 92.2 2.7 9.2E-05 41.2 14.4 98 122-221 142-246 (445)
240 1y8m_A FIS1; mitochondria, unk 92.2 0.41 1.4E-05 37.5 6.7 80 35-116 36-116 (144)
241 4b4t_P 26S proteasome regulato 92.1 7.1 0.00024 38.2 17.2 189 347-536 30-246 (445)
242 4gns_B Protein CSD3, chitin bi 91.9 1 3.6E-05 46.9 11.4 51 517-571 346-397 (754)
243 1y8m_A FIS1; mitochondria, unk 91.5 3.6 0.00012 32.3 11.2 66 471-536 37-105 (144)
244 3o48_A Mitochondria fission 1 91.4 1.8 6E-05 33.5 9.3 66 471-536 38-106 (134)
245 3o48_A Mitochondria fission 1 91.4 0.18 6.1E-06 39.0 3.8 77 39-117 41-118 (134)
246 4gns_B Protein CSD3, chitin bi 90.9 1.1 3.9E-05 46.7 10.4 126 79-220 252-398 (754)
247 2ff4_A Probable regulatory pro 89.5 4.8 0.00016 38.6 13.1 79 477-556 175-256 (388)
248 2ff4_A Probable regulatory pro 88.8 1.1 3.8E-05 43.1 8.0 70 196-266 174-248 (388)
249 3txn_A 26S proteasome regulato 88.7 17 0.00058 34.6 18.3 98 80-179 104-208 (394)
250 1v54_E Cytochrome C oxidase po 88.7 4 0.00014 29.6 8.5 63 383-446 25-87 (109)
251 4fhn_B Nucleoporin NUP120; pro 88.4 8.3 0.00028 43.2 15.8 51 199-254 818-868 (1139)
252 4ady_A RPN2, 26S proteasome re 87.5 34 0.0012 36.7 38.7 184 377-572 383-587 (963)
253 2wpv_A GET4, UPF0363 protein Y 87.0 18 0.00062 33.1 17.8 119 77-217 35-158 (312)
254 2wpv_A GET4, UPF0363 protein Y 86.6 19 0.00065 32.9 20.9 81 436-535 132-215 (312)
255 1v54_E Cytochrome C oxidase po 85.2 7.4 0.00025 28.3 8.3 49 418-466 25-73 (109)
256 4fhn_B Nucleoporin NUP120; pro 85.2 16 0.00054 41.0 15.8 144 408-561 817-987 (1139)
257 2y69_E Cytochrome C oxidase su 84.5 8 0.00027 29.8 8.7 63 383-446 68-130 (152)
258 3lpz_A GET4 (YOR164C homolog); 84.2 26 0.00088 32.3 21.9 48 436-487 134-181 (336)
259 1qsa_A Protein (soluble lytic 81.9 49 0.0017 33.8 34.0 203 312-535 228-440 (618)
260 2p58_C Putative type III secre 80.4 14 0.00049 26.7 8.8 84 49-147 16-99 (116)
261 3lpz_A GET4 (YOR164C homolog); 80.2 37 0.0013 31.3 21.2 82 471-573 134-215 (336)
262 2y69_E Cytochrome C oxidase su 80.1 13 0.00043 28.8 8.3 48 419-466 69-116 (152)
263 2uwj_G Type III export protein 79.8 13 0.00046 26.8 7.9 84 49-147 15-98 (115)
264 1zbp_A Hypothetical protein VP 76.3 9.9 0.00034 33.6 8.0 56 126-182 6-61 (273)
265 3esl_A Checkpoint serine/threo 76.1 33 0.0011 28.8 10.7 56 486-543 92-148 (202)
266 2uwj_G Type III export protein 75.3 21 0.0007 25.8 9.5 87 417-512 20-106 (115)
267 1qsa_A Protein (soluble lytic 75.0 78 0.0027 32.4 37.2 179 382-569 228-437 (618)
268 2p58_C Putative type III secre 74.6 22 0.00074 25.8 10.1 87 417-512 21-107 (116)
269 4ady_A RPN2, 26S proteasome re 74.4 99 0.0034 33.3 36.4 25 78-102 233-257 (963)
270 3ltm_A Alpha-REP4; protein eng 73.9 40 0.0014 28.5 17.3 28 507-535 156-183 (211)
271 1zbp_A Hypothetical protein VP 73.9 12 0.0004 33.2 7.8 121 446-573 5-128 (273)
272 4b4t_R RPN7, 26S proteasome re 73.8 28 0.00095 33.8 11.5 61 265-325 133-195 (429)
273 3txn_A 26S proteasome regulato 73.7 63 0.0022 30.7 22.6 166 263-429 19-207 (394)
274 4b4t_R RPN7, 26S proteasome re 73.2 43 0.0015 32.5 12.7 100 76-180 132-236 (429)
275 3esl_A Checkpoint serine/threo 66.9 39 0.0013 28.4 9.1 55 452-506 93-148 (202)
276 1wdy_A 2-5A-dependent ribonucl 59.2 93 0.0032 27.3 11.9 15 448-462 226-240 (285)
277 4b4t_S RPN3, 26S proteasome re 57.1 75 0.0026 31.4 10.6 68 75-146 231-299 (523)
278 4a1g_A Mitotic checkpoint seri 55.6 77 0.0026 25.2 9.9 50 492-543 84-134 (152)
279 4a1g_A Mitotic checkpoint seri 54.7 77 0.0026 25.2 8.5 53 456-508 83-136 (152)
280 3ltj_A Alpharep-4; protein eng 53.3 96 0.0033 25.7 18.8 59 472-535 120-178 (201)
281 2wvi_A Mitotic checkpoint seri 51.3 96 0.0033 25.1 10.3 53 491-545 78-131 (164)
282 1wdy_A 2-5A-dependent ribonucl 51.2 1.1E+02 0.0039 26.8 10.7 19 158-176 8-26 (285)
283 2wvi_A Mitotic checkpoint seri 49.1 1E+02 0.0036 24.8 8.7 53 456-508 78-131 (164)
284 2ijq_A Hypothetical protein; s 48.5 76 0.0026 25.5 7.6 50 54-103 46-103 (161)
285 3ltm_A Alpha-REP4; protein eng 46.3 1.3E+02 0.0044 25.1 17.9 122 367-501 63-184 (211)
286 3eu9_A Huntingtin-interacting 40.7 98 0.0034 26.3 8.3 44 203-250 16-61 (240)
287 2d2s_A Exocyst complex compone 40.1 1.8E+02 0.0063 25.1 9.8 27 333-359 91-117 (235)
288 2d2s_A Exocyst complex compone 39.7 1.2E+02 0.0041 26.3 8.2 22 409-430 24-45 (235)
289 4aez_C MAD3, mitotic spindle c 39.3 1.2E+02 0.0041 26.0 7.8 52 490-543 131-183 (223)
290 3jxi_A Vanilloid receptor-rela 37.5 51 0.0017 28.9 5.9 55 200-254 9-72 (260)
291 3eu9_A Huntingtin-interacting 36.0 1.4E+02 0.0049 25.2 8.6 44 238-285 16-61 (240)
292 2nsz_A Programmed cell death p 36.0 1.5E+02 0.005 22.8 7.4 23 232-254 11-33 (129)
293 2v6y_A AAA family ATPase, P60 34.7 25 0.00087 24.5 2.5 19 555-573 21-39 (83)
294 3bu8_A Telomeric repeat-bindin 34.5 1.7E+02 0.0059 24.7 7.7 49 419-467 88-143 (235)
295 3bu8_A Telomeric repeat-bindin 34.0 2.2E+02 0.0074 24.2 8.2 50 133-182 88-144 (235)
296 3hra_A Ankyrin repeat family p 33.4 2E+02 0.0067 23.5 9.0 15 203-217 12-26 (201)
297 4gq2_M Nucleoporin NUP120; bet 32.0 2.7E+02 0.0093 30.3 11.3 29 154-182 899-927 (950)
298 2ion_A PDCD4, programmed cell 30.5 1.2E+02 0.004 24.2 6.1 23 232-254 13-35 (152)
299 4gq2_M Nucleoporin NUP120; bet 30.3 5.4E+02 0.018 27.9 13.3 133 409-559 816-950 (950)
300 1k1a_A B-cell lymphoma 3-encod 30.1 2.5E+02 0.0085 23.7 11.4 46 200-245 13-60 (241)
301 2b7e_A PRE-mRNA processing pro 28.0 57 0.002 20.9 3.0 29 245-273 3-31 (59)
302 4aez_C MAD3, mitotic spindle c 27.7 2.1E+02 0.0072 24.4 7.4 52 455-506 131-183 (223)
303 3hra_A Ankyrin repeat family p 27.5 2.3E+02 0.0077 23.1 8.1 17 161-177 11-27 (201)
304 3ubw_A 14-3-3E, 14-3-3 protein 26.9 3.2E+02 0.011 24.0 11.0 31 377-407 40-70 (261)
305 1bpo_A Protein (clathrin); cla 26.6 4.5E+02 0.015 25.5 13.2 141 416-571 342-482 (494)
306 3kea_A K1L; tropism, ANK repea 25.8 3E+02 0.01 24.3 9.1 12 234-245 65-76 (285)
307 3pvs_A Replication-associated 25.8 4.6E+02 0.016 25.3 13.6 152 243-396 166-358 (447)
308 2xig_A Ferric uptake regulatio 24.2 2.5E+02 0.0085 22.1 7.1 42 270-311 33-74 (150)
309 3eiq_C Programmed cell death p 24.2 4.4E+02 0.015 24.5 12.1 24 372-395 221-244 (358)
310 2nsz_A Programmed cell death p 24.2 2.4E+02 0.0082 21.5 7.4 22 443-464 12-33 (129)
311 3ph0_C ASCG; type III secretio 23.8 1.4E+02 0.0049 18.8 4.9 47 48-95 14-60 (61)
312 3uzd_A 14-3-3 protein gamma; s 23.6 3.7E+02 0.013 23.4 10.0 15 520-534 186-200 (248)
313 3jxi_A Vanilloid receptor-rela 23.5 1E+02 0.0035 26.8 5.3 62 159-220 9-73 (260)
314 2fe3_A Peroxide operon regulat 23.1 2.4E+02 0.0083 21.9 6.8 35 276-310 34-68 (145)
315 3ltj_A Alpharep-4; protein eng 23.1 3.1E+02 0.011 22.4 18.9 106 401-518 88-193 (201)
316 2w2u_A Hypothetical P60 katani 22.3 95 0.0033 21.6 3.7 18 555-572 29-46 (83)
317 2cwy_A Hypothetical protein TT 21.9 1E+02 0.0036 22.0 3.9 48 54-103 15-67 (94)
318 3eyy_A Putative iron uptake re 21.8 2.3E+02 0.0078 22.1 6.4 62 284-347 5-66 (145)
319 4ets_A Ferric uptake regulatio 21.7 1.6E+02 0.0053 23.7 5.5 44 269-312 38-83 (162)
320 3t8k_A Uncharacterized protein 21.5 3.3E+02 0.011 22.1 9.2 165 235-403 10-186 (186)
321 2crb_A Nuclear receptor bindin 21.3 1.6E+02 0.0055 20.9 4.4 26 77-102 17-42 (97)
322 2ion_A PDCD4, programmed cell 21.3 2.1E+02 0.0072 22.7 6.0 22 443-464 14-35 (152)
323 2r9g_A AAA ATPase, central reg 21.1 3.7E+02 0.013 22.5 10.2 95 116-221 17-116 (204)
324 3bge_A Predicted ATPase; struc 21.0 3.6E+02 0.012 22.5 10.3 55 128-182 18-77 (201)
325 2xig_A Ferric uptake regulatio 20.9 3.1E+02 0.01 21.5 7.9 59 288-347 17-75 (150)
326 3ctd_A Putative ATPase, AAA fa 20.7 3.8E+02 0.013 22.6 9.8 74 76-151 33-109 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-41 Score=356.07 Aligned_cols=491 Identities=9% Similarity=-0.037 Sum_probs=401.6
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
.+..+...+... +.+++..|+.++..+.+.|++++|+.+|+++... .|+..++..+ +..+...|+++
T Consensus 68 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l-------~~~~~~~g~~~ 134 (597)
T 2xpi_A 68 SFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWL-------AQVYCCTGDYA 134 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHH-------HHHHHHTTCHH
T ss_pred ccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHH-------HHHHHHcCcHH
Confidence 566666666654 5568899999999999999999999999999865 6777666554 46788999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCCccccccHHHHHHHHHHHHh
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDY---------ENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
+|+.+|+++... +++..+++.++.+|.+.|++++|+++|+++..... ......+.+..+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999998654 67899999999999999999999999995322110 0000124568899999999999
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVN--GL-FIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
.|++++|++.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|
T Consensus 213 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 999999999999998864 224455666655444333322221 11 44554444444555677778889999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
.++|+++.+. +++..++..++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+.
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999998876 57899999999999999999999999999998763 37888999999999999999999999999875
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFN 442 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 442 (626)
.+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|..+|+++.... +.+..++.
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 35578899999999999999999999999998753 4567899999999999999999999999998775 56888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GCAPN--VVTFNTLMH 516 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~ 516 (626)
.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 99999999999999999999998853 347889999999999999999999999999875 55777 689999999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+|.+.|++++|.+.++++.+ ..| +..+|..++.+|.+.|++++|.+.++++.
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLL----LSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999988 556 68899999999999999999999999986
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-40 Score=345.45 Aligned_cols=486 Identities=9% Similarity=-0.006 Sum_probs=410.2
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
..++.++..+.+.| ++++|+.+|++++... |+..++..++.++.+.|++++|+.+|+++... .++...++.+.
T Consensus 85 ~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~- 157 (597)
T 2xpi_A 85 DYLRLWRHDALMQQ--QYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA- 157 (597)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHcc--CchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH-
Confidence 34567788888877 9999999999998654 46688999999999999999999999998654 56666666654
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAF---------------GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDY 183 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 183 (626)
..|.+.|++++|+.+|+++... +.+++..+|+.++.+|.+.|++++|++.|+++.+.+
T Consensus 158 ------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 230 (597)
T 2xpi_A 158 ------FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD- 230 (597)
T ss_dssp ------HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ------HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5788999999999999953222 123357899999999999999999999999999876
Q ss_pred CCCccccccHHHHHHHHHHHHhcCCcchHHH--H-HHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 184 ENGLISKTNIFSYSIIIDSLCKEGLVDKAKE--L-FLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPR 260 (626)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (626)
+.+...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +
T Consensus 231 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 302 (597)
T 2xpi_A 231 ------AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--E 302 (597)
T ss_dssp ------TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--G
T ss_pred ------chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--C
Confidence 4566677766665544433222211 1 444554444445566777788899999999999999999875 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040279 261 PNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILI 340 (626)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (626)
++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 789999999999999999999999999999875 3477889999999999999999999999998764 44788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 341 NGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQ 420 (626)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (626)
..|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998863 3467899999999999999999999999998864 557889999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CCCCC--HhHHHHHHHHHHhcCCHHHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK----GLVPT--VVTYSIMIHGLCRKGKLEKAND 494 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 494 (626)
+|..+|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999998765 558899999999999999999999999999875 55677 7899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHH
Q 040279 495 FLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+ +.|+ ...+..+..+|.
T Consensus 538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA----ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCChHHHHHHHHHHh
Confidence 999999875 55889999999999999999999999999998 7784 667777776654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2.4e-28 Score=243.01 Aligned_cols=383 Identities=11% Similarity=0.049 Sum_probs=299.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 3456677888888888888887765 5666777777788888888888888888877653 4466788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTA 317 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 317 (626)
|...|++++|++.|+++.+..+. +..+|..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 88888888888888888775332 55678888888888888888888888888763 22344566677778888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 040279 318 REIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLY 397 (626)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (626)
.+.|+++.+... .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 155 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888877642 356778888888888888888888888888763 335677778888888888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHH
Q 040279 398 NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYS 477 (626)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 477 (626)
. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++|...|+++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 3 3356778888888888888888888888888765 4567788888888888899999999988888752 45678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLA 556 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 556 (626)
.++..+...|++++|.+.++++.+.. +.+..++..++.++.+.|++++|...++++++ +.| +...+..++.++.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT----TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCHHHHHhHHHHHH
Confidence 88888888999999999998888753 45577888888888899999999999999887 667 4677778887776
Q ss_pred ccCC
Q 040279 557 KDEK 560 (626)
Q Consensus 557 ~~g~ 560 (626)
..|+
T Consensus 385 ~~~~ 388 (388)
T 1w3b_A 385 EMQD 388 (388)
T ss_dssp HTCC
T ss_pred HccC
Confidence 6553
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=5.1e-28 Score=240.68 Aligned_cols=383 Identities=13% Similarity=0.056 Sum_probs=334.0
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+..+.+.|++++|+..++++.+.. +.+...+..+...+...|++++|...++...+.+ |.+..+|..+...+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHH
Confidence 456778999999999999998874 4466778888899999999999999999999876 67889999999999
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
.+.|++++|++.|+++.+.. +.+...|..+..++...|++++|.+.|+++.+..+. +...+..+...+...|++++|.
T Consensus 78 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999998863 334567999999999999999999999999986433 5567788889999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNG 363 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 363 (626)
..|+++.+.. +.+..++..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|+..+++.....
T Consensus 156 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 156 ACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999874 33678899999999999999999999999998753 367788999999999999999999999998863
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 040279 364 VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNC 443 (626)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 443 (626)
+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..
T Consensus 234 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 310 (388)
T 1w3b_A 234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNN 310 (388)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 3467888999999999999999999999999864 4467789999999999999999999999998765 678899999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (626)
+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|.+.|+++.+.. +.+...+..+...+...|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999998852 4457899999999999999999999999999863 4456788888887766653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-27 Score=241.40 Aligned_cols=205 Identities=14% Similarity=0.168 Sum_probs=156.8
Q ss_pred hHHHHHHHHhhCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------HH
Q 040279 211 KAKELFLEMKGRGINPAV-VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGK---------IN 280 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 280 (626)
.+..+.+++.+++..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666554443 35777788888888888888888888888888888888888888876554 57
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 281 EANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 361 SNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888888877765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.3e-27 Score=240.99 Aligned_cols=212 Identities=13% Similarity=0.158 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
+..+.+.+.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444445444443332 234555566666666666666666666666666666666666655544321000
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 040279 361 SNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEI 440 (626)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (626)
...+..+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 00111344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555554443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-25 Score=229.99 Aligned_cols=431 Identities=12% Similarity=-0.010 Sum_probs=280.4
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.+..+...|++++|+..|+++++.. |+..++..++.++.+.|++++|+..++++++.+ |.+..++..+..+
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHH
Confidence 4578889999999999999999874 789999999999999999999999999999876 6778899999999
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
+.+.|++++|.+.|+++...+ +++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998875 3455555555555554444444444333322221111111111100000001111111
Q ss_pred HHHHHHHHhcCC---------CCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHh-----cCC--------CCChhhHH
Q 040279 283 NGLLELMIQRGL---------NPDRFTYNSLMDGYCL---VGRIDTAREIFLSMHS-----KGC--------KHTVVSYN 337 (626)
Q Consensus 283 ~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 337 (626)
..+...+..... +.+...+......+.. .|+++.|...|+++.+ ... +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111110 1113333333343443 6777777777777766 211 11344566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040279 338 ILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN 417 (626)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (626)
.+...+...|++++|+..++++.+.... ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 6677777777888888877777765332 6667777777777777777877777777653 335566777777777778
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
++++|...++.+.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..++.++...|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888887777654 4456677777777777788888888887777642 2346677777777778888888888887
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 040279 498 YMEKNGC-APN----VVTFNTLMHGFLQ---NNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVS 568 (626)
Q Consensus 498 ~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 568 (626)
++.+... .++ ...+..++..+.. .|++++|...++++++ ..| +..++..++.++.+.|++++|.+.+
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK----LDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7766420 111 2367777777777 7888888888888776 455 4566777777788888888888888
Q ss_pred HHHH
Q 040279 569 KSSY 572 (626)
Q Consensus 569 ~~~~ 572 (626)
+++.
T Consensus 473 ~~a~ 476 (514)
T 2gw1_A 473 EESA 476 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-24 Score=225.67 Aligned_cols=446 Identities=13% Similarity=0.001 Sum_probs=299.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVIT 154 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (626)
...+...+..+.+.|++++|+..|+++++. .|+...+..+ +..+...|++++|+..++++++.+ +.+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 75 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNL-------SACYVSVGDLKKVVEMSTKALELK-PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHH-------HHHHHHHTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhH-------HHHHHHHhhHHHHHHHHHHHhccC-hHHHHH
Confidence 345666777777777777777777777766 3554443333 356677777777777777777764 345667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHH
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL 234 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (626)
+..++.++.+.|++++|+..|+++...+ +.+......++..+........+.+.+..+...+..|+...+..-
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 7777777778888888888888777765 233333333333333332222222222222211111111111110
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC---
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGP---------RPNLLTFNVMIDCLCK---GGKINEANGLLELMIQ-----RGL--- 294 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--- 294 (626)
...............+...+..... +.+...+......+.. .|++++|...++++.+ ..-
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 0000001111111111111111111 1123344444444444 7888888888888877 311
Q ss_pred -----CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 040279 295 -----NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVI 369 (626)
Q Consensus 295 -----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (626)
+.+..++..+...+...|++++|...++++.+.... ...+..+..++...|++++|+..++++.+.. +.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 123456777788888999999999999998887533 7778888888999999999999999988763 34667
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (626)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence 78888889999999999999999988764 3456678888888999999999999999888654 456778888999999
Q ss_pred HcCCHHHHHHHHHhcccCCCC-CC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 450 KAGRLDNAWELFHKLPQKGLV-PT----VVTYSIMIHGLCR---KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
..|++++|...++++.+.... ++ ...+..++.++.. .|++++|.+.++++.+.. +.+..++..+...+...
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 999999999999998774211 11 3388899999999 999999999999998864 55677889999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 522 NKTSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
|++++|...++++.+ +.|+...
T Consensus 463 g~~~~A~~~~~~a~~----~~~~~~~ 484 (514)
T 2gw1_A 463 EDIDEAITLFEESAD----LARTMEE 484 (514)
T ss_dssp TCHHHHHHHHHHHHH----HCSSHHH
T ss_pred cCHHHHHHHHHHHHH----hccccHH
Confidence 999999999999998 7786544
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.3e-23 Score=216.76 Aligned_cols=428 Identities=13% Similarity=0.039 Sum_probs=305.2
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (626)
+..++..+...|++++|+..|++++... +.+..++..++.++.+.|++++|++.++++++.+ |.+..++..+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l 99 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHHHH
Confidence 3345678899999999999999999875 5578899999999999999999999999999876 6778899999
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcC
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP--RPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 277 (626)
..++...|++++|++.|+.+ .. .|+ .....+..+...+...+|...++++....+ .+........+..+....
T Consensus 100 a~~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 99999999999999999744 32 222 222334455566667889999988865421 111112233344455556
Q ss_pred CHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHH--------hcCChHHHHHHHHHHHhcCCCCC-------hhhHHHHHH
Q 040279 278 KINEANGLLELMIQRGLNPDRF-TYNSLMDGYC--------LVGRIDTAREIFLSMHSKGCKHT-------VVSYNILIN 341 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~ 341 (626)
+.+.+...+...... .+... ....+...+. ..|++++|..+++.+.+.... + ..++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 665555443332221 12211 2222222221 224788888888888876422 2 224566667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 342 GYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQE 421 (626)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (626)
.+...|++++|+..++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 778888899999999888876 3447777888888888899999999998887753 4467788888888888999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
|...++.+.... +.+...+..+..++...|++++|..+++++.+.. +.+...+..++.++...|++++|.+.++++.+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999998887654 4456778888888889999999999998888753 33567888888888999999999999988876
Q ss_pred CC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 502 NG-----CAPNVVTFNTLMHGFLQN----------NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 502 ~~-----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
.. .......+.....++... |++++|...++++.+ ..| +...+..++.++.+.|++++|.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE----LDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 42 111122344555667777 889999999999887 566 4677888888999999999999
Q ss_pred HHHHHHH
Q 040279 566 AVSKSSY 572 (626)
Q Consensus 566 ~~~~~~~ 572 (626)
+.++++.
T Consensus 483 ~~~~~al 489 (537)
T 3fp2_A 483 ELFEDSA 489 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998886
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=9.4e-23 Score=207.07 Aligned_cols=317 Identities=9% Similarity=0.003 Sum_probs=233.7
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVM 269 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 269 (626)
+.+...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.++. +..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 6778889999999999999999999999998763 446788999999999999999999999999887543 67788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH---hhHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 040279 270 IDCLCKGGKINEANGLLELMIQRGLNPDR---FTYNSL------------MDGYCLVGRIDTAREIFLSMHSKGCKHTVV 334 (626)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 334 (626)
+..|...|++++|...|+++.+.+. .+. ..+..+ ...+...|++++|...|+.+.+.. +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999999988632 233 444444 344777888888888888887764 23667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 040279 335 SYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNIL----- 409 (626)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 409 (626)
.+..+..+|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 77888888888888888888888887652 3466778888888888888888888888887642 2233334333
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 410 -------IDGLCKNNCVQEAVKLFHMLEMNKFEFG----IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 410 -------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
...+...|++++|...|+.+.... +.+ ...+..+..++.+.|++++|+..++++.+.. +.+..+|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 566777777777777777776543 112 3356667777777777777777777776542 235667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
++.+|...|++++|...++++.+.. +-+...+..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 7777777777777777777777642 22344555554
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3.1e-23 Score=215.85 Aligned_cols=439 Identities=12% Similarity=0.043 Sum_probs=306.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVIT 154 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (626)
...|..++..+.+.|++++|+..|+++++. .|+....-.. ++..+...|++++|+..|+++++.+ +.+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 95 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSN------ISACYISTGDLEKVIEFTTKALEIK-PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHH------HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHH------HHHHHHHcCCHHHHHHHHHHHHhcC-CchHHH
Confidence 456777888888888888888888888866 4544322222 2456778888888888888888764 446777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC--CCCCcchHH
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG--INPAVVVCT 232 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 232 (626)
+..++.++...|++++|+..|+ ..... |+ .....+..+...+...+|...++++.... ..+......
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~--------~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLN--------GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcC--------CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 8888888888888888888886 43322 11 11222334445555677888888876541 111122233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCC------
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLL-TFNVMIDCLC--------KGGKINEANGLLELMIQRGLNPD------ 297 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~------ 297 (626)
..+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++.+.+.... +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHH
Confidence 4445555666666655544333221 11111 2222222222 124788888888888876322 2
Q ss_pred -HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 298 -RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS 376 (626)
Q Consensus 298 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (626)
..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|+..++++.+.. +.+..++..+..
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 318 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQ 318 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHH
Confidence 2245666677888899999999999998874 457788888888889999999999999988763 346778888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDN 456 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 456 (626)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999988753 3356778888899999999999999999888765 5567788889999999999999
Q ss_pred HHHHHHhcccCCCC-----CCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 457 AWELFHKLPQKGLV-----PTVVTYSIMIHGLCRK----------GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 457 A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
|...|+++.+.... .....+..+..++... |++++|...++++.+.. +.+..++..+..+|...
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 99999998763211 1122344556777777 99999999999998864 55678899999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 522 NKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
|++++|.+.++++++ +.|+..
T Consensus 476 g~~~~A~~~~~~al~----~~~~~~ 496 (537)
T 3fp2_A 476 EKIDEAIELFEDSAI----LARTMD 496 (537)
T ss_dssp TCHHHHHHHHHHHHH----HC--CH
T ss_pred ccHHHHHHHHHHHHH----hCCCcH
Confidence 999999999999998 667543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.4e-22 Score=204.10 Aligned_cols=329 Identities=12% Similarity=0.063 Sum_probs=254.8
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 137 TWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
...+.++.... +.+...+..++..+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|.+.|
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33344444332 4456778888888888888888888888888765 566888888888888888888888888
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHH------------HHHHHhcCCHHH
Q 040279 217 LEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL---LTFNVM------------IDCLCKGGKINE 281 (626)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~ 281 (626)
+++.+.+ +.+...+..+..+|...|++++|.+.|+++.+..+. +. ..+..+ ...+...|++++
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888764 335677888888888888888888888888875432 33 444444 445888999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++..
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998864 4477788889999999999999999999988764 34678899999999999999999999999987
Q ss_pred CCCCCChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 040279 362 NGVRQTVITYNTL------------LSGLFQAGQAGYAQKLFDEMKLYNVEPD-----LSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 362 ~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
.. +.+...+..+ ...+...|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|..
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 53 2244444444 78889999999999999999874 344 3478888899999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
.++.+.... +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 999988654 5578899999999999999999999999998852 2245666665544
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3.6e-18 Score=174.77 Aligned_cols=362 Identities=13% Similarity=0.016 Sum_probs=301.8
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh----cC
Q 040279 136 ATWLFKNMIAFGVRPDVITYGTLINGFCR----TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK----EG 207 (626)
Q Consensus 136 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 207 (626)
+...++...+.| +..++..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~ 93 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQ 93 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCC
Confidence 455666665543 77888888888888 899999999999998754 46678888888888 89
Q ss_pred CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCH
Q 040279 208 LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC----AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK----GGKI 279 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 279 (626)
++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999998875 66778888888888 789999999999998875 56778888888887 7899
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHH
Q 040279 280 NEANGLLELMIQRGLNPDRFTYNSLMDGYCL----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----ILNVEE 351 (626)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 351 (626)
++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998875 67778888888887 899999999999998875 66778888888876 789999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHH
Q 040279 352 AMSLYRQIISNGVRQTVITYNTLLSGLFQ----AGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN-----NCVQEA 422 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A 422 (626)
|+..|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998764 55667777777877 899999999999998754 456677777788776 899999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAG---RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDF 495 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 495 (626)
...++...+.+ +...+..+...|...| ++++|+++|++..+. .+...+..+...|.. .+++++|.+.
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999888765 4567777888887766 789999999999886 367888889999988 8899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhc
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAE 536 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 536 (626)
|++..+.+ +...+..+...|.. .+++++|...|+++.+
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99999865 57788888888888 8999999999999988
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.1e-19 Score=176.30 Aligned_cols=330 Identities=9% Similarity=0.014 Sum_probs=211.2
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 192 NIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMID 271 (626)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 271 (626)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34556666667777777777777777766653 334566666677777777777777777776665322 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 040279 272 CLCKGGKINEANGLLELMIQRGLN--PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNV 349 (626)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (626)
.+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777776654210 12222222211000 01122234556666777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 350 EEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHML 429 (626)
Q Consensus 350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 429 (626)
++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766652 3355566666666777777777777777766543 345566666666777777777777777666
Q ss_pred HHCCCCcCHHHHH------------HHHHHHHHcCCHHHHHHHHHhcccCCCCCC-H----hHHHHHHHHHHhcCCHHHH
Q 040279 430 EMNKFEFGIEIFN------------CLIDGLCKAGRLDNAWELFHKLPQKGLVPT-V----VTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 430 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 492 (626)
.+.. +.+...+. .+...+...|++++|...++++.+.. |+ . ..+..+..++...|++++|
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 6543 22333222 23566788889999999888887742 33 2 2345577888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
.+.++++.+.. +.+..++..++..+...|++++|...++++++ +.|+ ...+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE----HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChHHHHHHHHHHH
Confidence 99999888863 44677888888889999999999999999988 6775 455555555543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.3e-19 Score=172.37 Aligned_cols=333 Identities=12% Similarity=0.031 Sum_probs=199.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
+...+..+...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|.+.++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 34567777888888888888888888888765 5667788888888888888888888888887753 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPR--PNLLTFNVM------------IDCLCKGGKINEANGLLELMIQRGLNP 296 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 296 (626)
+..+...+...|++++|...|++..+..+. .+...+..+ ...+...|++++|...++.+.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 888888888888888888888888775330 133333333 334444455555555555544432 22
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 297 DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS 376 (626)
Q Consensus 297 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (626)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~- 229 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK- 229 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH-
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH-
Confidence 33444444444444455555554444444432 1233444444444444444444444444444331 11111111000
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHHcC
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI----EIFNCLIDGLCKAG 452 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 452 (626)
.+. .......+...+.+.|++++|...++.+.... +.+. ..+..+..++...|
T Consensus 230 ----------------~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 230 ----------------QVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp ----------------HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------HHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHcc
Confidence 000 00111223555677778888888887776543 2222 23445667777888
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
++++|...++++.+.. +.+..+|..++.++...|++++|.+.|+++.+.. +.+...+..+..+...
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8888888888877642 2357777788888888888888888888888753 3345556666555543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.9e-17 Score=169.34 Aligned_cols=363 Identities=14% Similarity=0.054 Sum_probs=309.5
Q ss_pred HHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh----cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cC
Q 040279 171 ALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK----EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC----AG 242 (626)
Q Consensus 171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 242 (626)
+...++...+. .++..+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+
T Consensus 26 ~~~~~~~~a~~---------g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 93 (490)
T 2xm6_A 26 NLEQLKQKAES---------GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ 93 (490)
T ss_dssp CHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 35555555543 357778888888888 899999999999998875 67788889999998 89
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCh
Q 040279 243 NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK----GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL----VGRI 314 (626)
Q Consensus 243 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~ 314 (626)
++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999998865 66778888888888 889999999999998875 56777788888887 7899
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHH
Q 040279 315 DTAREIFLSMHSKGCKHTVVSYNILINGYCK----ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ----AGQAGY 386 (626)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 386 (626)
++|.++|++..+.+ +...+..+...|.. .++.++|+..|++..+.+ +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998875 77888889999988 899999999999999874 56677888888886 889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc-----CCHHHH
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCK----NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA-----GRLDNA 457 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A 457 (626)
|..+|++..+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998764 45667777777877 899999999999988765 566777888888887 899999
Q ss_pred HHHHHhcccCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 040279 458 WELFHKLPQKGLVPTVVTYSIMIHGLCRKG---KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVEL 530 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 530 (626)
+.+|++..+.| +...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .+++++|...
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999998864 5678888888888866 8899999999999864 77889999999998 8999999999
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhh
Q 040279 531 LHKMAEPERNLVPDDTTFSIVVDLLAK----DEKYHECSAVSKSSYRA 574 (626)
Q Consensus 531 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 574 (626)
|+++.+ . .+...+..++.+|.. .+++++|.++|+++...
T Consensus 390 ~~~A~~--~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 390 MRKAAE--Q---GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHh--C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999998 3 357888999999998 89999999999999754
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.4e-19 Score=169.77 Aligned_cols=291 Identities=9% Similarity=-0.073 Sum_probs=191.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILIN 341 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (626)
+...+...+..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+... .+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 34445555555555566666666666655542 22334444455555566666666666666655432 24455556666
Q ss_pred HHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 342 GYCKIL-NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQ 420 (626)
Q Consensus 342 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (626)
.+...| ++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666542 2244556666666666666777766666666542 223445555666777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC--------CCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG--------LVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+|...++.+.... +.+...+..+...+...|++++|...++++.+.. .+.+..++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776554 4456677777777777778777777777766521 133456888888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHH-HccCCHh
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLL-AKDEKYH 562 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 562 (626)
.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+ +.| +...+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG----LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT----TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc----cCCCchHHHHHHHHHHHHHhCchh
Confidence 99999988864 44677888889999999999999999999987 677 567788888877 4556543
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.2e-17 Score=172.76 Aligned_cols=409 Identities=11% Similarity=0.036 Sum_probs=268.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc
Q 040279 150 PDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229 (626)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (626)
-+..+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|.++|+++... .|+..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~ 80 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHID 80 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChH
Confidence 35566666666 356677777777777776654 556666666777777777777777777776665 24555
Q ss_pred hHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcC
Q 040279 230 VCTTLIHGF-CCAGNWEEVNG----LFIEMLDL-GPRP-NLLTFNVMIDCLCK---------GGKINEANGLLELMIQRG 293 (626)
Q Consensus 230 ~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~ 293 (626)
.|...+... ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++.++..
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 555555422 23455544443 55554432 3222 34455555554433 466677777777766631
Q ss_pred CCCCHhhHHHHHHHH-------------HhcCChHHHHHHHHHHH------hcC---CCCC--------hhhHHHHHHHH
Q 040279 294 LNPDRFTYNSLMDGY-------------CLVGRIDTAREIFLSMH------SKG---CKHT--------VVSYNILINGY 343 (626)
Q Consensus 294 ~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~ 343 (626)
.......|....... ...++++.|..+++.+. +.. ++|+ ...|...+...
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 111112222211110 12345666766666532 211 2333 23455544433
Q ss_pred Hhc----CCh----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCC
Q 040279 344 CKI----LNV----EEAMSLYRQIISNGVRQTVITYNTLLSGLFQ-------AGQAG-------YAQKLFDEMKLYNVEP 401 (626)
Q Consensus 344 ~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~ 401 (626)
... ++. +.++.+|++++.. .+.+...|..++..+.. .|+++ +|..++++..+.-.+.
T Consensus 241 ~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 241 KSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 222 232 4778899998876 34467888888887775 68876 8999999998632344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI-EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMI 480 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 480 (626)
+...+..++..+.+.|++++|..+|+++.... +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a 397 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH
Confidence 67788889999999999999999999998863 2233 588888898999999999999999998852 22333443333
Q ss_pred HH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHHHc
Q 040279 481 HG-LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLLAK 557 (626)
Q Consensus 481 ~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 557 (626)
.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++++. .....|+ ...|...+.....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~-~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT-SGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-SCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHH
Confidence 22 346899999999999998863 44678999999999999999999999999988 1123342 4578888888888
Q ss_pred cCCHhHHHHHHHHHHh
Q 040279 558 DEKYHECSAVSKSSYR 573 (626)
Q Consensus 558 ~g~~~~A~~~~~~~~~ 573 (626)
.|+.+.+.++.+++..
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999863
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.5e-18 Score=166.41 Aligned_cols=293 Identities=13% Similarity=0.036 Sum_probs=219.4
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 040279 225 NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSL 304 (626)
Q Consensus 225 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 304 (626)
+.+...+..+...+...|++++|+++|+++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 446667777788888888888888888888776433 55566667777788888888888888887763 3356677777
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 040279 305 MDGYCLVG-RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQ 383 (626)
Q Consensus 305 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (626)
...+...| ++++|...|+++.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 78888888 88888888888877642 356677888888888888888888888887763 2345666667888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHHHHHHHHHHHHcCCHH
Q 040279 384 AGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK--------FEFGIEIFNCLIDGLCKAGRLD 455 (626)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 455 (626)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.... .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887753 4456778888888888888888888888776431 1334567888888888889999
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF-LQNNKT 524 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 524 (626)
+|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999888887753 3357788888888888899999999988888753 44566777777777 345554
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=5.3e-17 Score=167.88 Aligned_cols=426 Identities=9% Similarity=0.024 Sum_probs=280.9
Q ss_pred HHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHhhhhhhhhhhhcCCHHHHHHHHH
Q 040279 63 FGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL-TLNILINCFGNKERGLCVENRIKEATWLFK 141 (626)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~ 141 (626)
|++.+...|. +..+|..++.. .+.|++++|+.+|+++++. .|+.. .|...+ ..+.+.|++++|..+|+
T Consensus 2 le~al~~~P~-~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~-------~~~~~~~~~~~a~~~~~ 70 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYI-------EAEIKAKNYDKVEKLFQ 70 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHH-------HHHHHTTCHHHHHHHHH
T ss_pred hhhHhhhCCC-CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHH-------HHHHhcCCHHHHHHHHH
Confidence 4556666555 78889888884 7789999999999999875 55443 344433 45667889999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHH-HhcCChHHHHH----HHHHHHhC-CCCCCccccccHHHHHHHHHHHHh---------c
Q 040279 142 NMIAFGVRPDVITYGTLINGF-CRTGNLSVALR----LHKKMVSG-DYENGLISKTNIFSYSIIIDSLCK---------E 206 (626)
Q Consensus 142 ~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~---------~ 206 (626)
+++.. .|+...|..++... ...|+.+.|.+ +|++.+.. +. .+.+...|...+....+ .
T Consensus 71 ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 71 RCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM-----EIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT-----STTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC-----CcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 99876 46777777777533 34677776655 77776543 21 13456777777776655 6
Q ss_pred CCcchHHHHHHHHhhCCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 207 GLVDKAKELFLEMKGRGINPAV---VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
|+++.|..+|++..+. |.. ..|..........|. . +...++. ...+++..|.
T Consensus 144 ~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~ 198 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNAR 198 (530)
T ss_dssp HHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHH
Confidence 7888999999998873 322 222222211100010 0 0000110 0123344555
Q ss_pred HHHHHH------HhcC---CCCC--------HhhHHHHHHHHHhc----CCh----HHHHHHHHHHHhcCCCCChhhHHH
Q 040279 284 GLLELM------IQRG---LNPD--------RFTYNSLMDGYCLV----GRI----DTAREIFLSMHSKGCKHTVVSYNI 338 (626)
Q Consensus 284 ~~~~~~------~~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~ 338 (626)
.++... .+.. ++|+ ...|...+...... ++. ..+..+|++..... +.+...|..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 444432 1111 2332 13444444332221 222 36777888877763 336777877
Q ss_pred HHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H
Q 040279 339 LINGYCK-------ILNVE-------EAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD-L 403 (626)
Q Consensus 339 l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 403 (626)
++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 7777765 68876 88999998886323446778888888888899999999999998875 443 2
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 404 -STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDG-LCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 404 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
..|...+..+.+.|++++|..+|++..+.. +.+...+...... +...|+.++|..+|++..+.. +.+...|..++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~ 433 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 478888888888889999999999888653 3333444333222 336899999999999888752 335788888898
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 482 GLCRKGKLEKANDFLLYMEKNG-CAPN--VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.+.|+.++|..+|++..+.+ ..|+ ...|...+......|+.+.+..+.+++.+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999998863 2222 34777778888888999999999999887
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=8e-19 Score=172.87 Aligned_cols=307 Identities=10% Similarity=-0.024 Sum_probs=198.3
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 040279 237 GFCCAGNWEEVNG-LFIEMLDLGPR---PNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVG 312 (626)
Q Consensus 237 ~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 312 (626)
++...|++++|.+ .+++....... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445566666666 55544432211 123455566666666666666666666666653 234555666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 040279 313 RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFD 392 (626)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 392 (626)
++++|...|+++.+.. +.+..++..+..++...|++++|+..++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 6666666666666553 224555666666666666666666666666654211 11111111000 00
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 393 EMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF-GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
. ..+. ..+.. +..+...|++++|...++.+....... +..++..+...+...|++++|+..++++.+.. +.
T Consensus 178 -~----~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01112 222337889999999999888664221 57888899999999999999999999988752 33
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-------
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD------- 544 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------- 544 (626)
+..+|..++.++...|++++|.+.++++.+.. +.+..++..++.+|.+.|++++|...++++++ +.|+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~ 324 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN----MQRKSRGPRGE 324 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCCCcccc
Confidence 57889999999999999999999999998864 55678899999999999999999999999987 4442
Q ss_pred -----HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 545 -----DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 545 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+|..++.++...|++++|..++++.+
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5789999999999999999999988654
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=7e-15 Score=157.21 Aligned_cols=360 Identities=13% Similarity=0.076 Sum_probs=204.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH---------------------------H
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL---------------------------C 204 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------~ 204 (626)
+.--...+++|...|.+.+|+++++++...+.. ...+...-+.++.+. .
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~----fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc----ccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHH
Confidence 334456677888888888888888888743310 112333333344443 3
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 284 (626)
..|.+++|..+|++... .....+.++ -..+++++|.++.++. -+..+|..+..++...|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44444444444444310 111111111 1444455555554433 134455566666666666666666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040279 285 LLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV 364 (626)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 364 (626)
.|.+. -|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+ +.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 65442 244555556666666666666666666555543 2222233355566666555532222 11
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 040279 365 RQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCL 444 (626)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 444 (626)
.++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.++.. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 123444555666666666666666666653 24566666666666666666666544 244566666
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC
Q 040279 445 IDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ--NN 522 (626)
Q Consensus 445 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g 522 (626)
..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-+...|+.+...|.+ .+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 666666666666666554322 355666788888888888999998888877654 3344566666666654 44
Q ss_pred CHHHHHHHHHHhhcCCCCCCC------CHHHHHHHHHHHHccCCHhHHHHHHH
Q 040279 523 KTSKVVELLHKMAEPERNLVP------DDTTFSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 523 ~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
+..++.++|..-.. ++| +...|..+.-.|.+.|+++.|...+-
T Consensus 1331 klmEhlk~f~~rin----i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1331 KMREHLELFWSRVN----IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHHHHhcc----cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55666666665544 444 35668888888999999998885443
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=8.1e-15 Score=156.71 Aligned_cols=420 Identities=10% Similarity=0.063 Sum_probs=275.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL--LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
++.--...+.+|...|.+.+|+++++++...+- .-+....+.++. +..+. +..+.....++....
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~-------tAIka-D~~Rv~eyI~kLd~~----- 1050 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLIL-------TAIKA-DRTRVMEYINRLDNY----- 1050 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHH-------HHHHh-ChhhHHHHHHHhhhc-----
Confidence 344445566777788888888888888873311 011122222221 22222 333444444433211
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
....+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|
T Consensus 1051 --d~~eIA~Iai~lglyEEAf~IYkKa~~-----------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vW 1108 (1630)
T 1xi4_A 1051 --DAPDIANIAISNELFEEAFAIFRKFDV-----------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVW 1108 (1630)
T ss_pred --cHHHHHHHHHhCCCHHHHHHHHHHcCC-----------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHH
Confidence 133467777788888888888888631 122223332 26678888888887652 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 311 (626)
..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+.+...++.. +++...+.++.+|.+.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 88888888888888888888553 266778888888888888888888888877764 3433444578888888
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
++++....+. + .++...|..+...|...|++++|..+|..+ ..|..+...+.+.|+++.|.+.+
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 8877533332 2 245566777888888888888888888875 36788888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-
T Consensus 1245 rKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1245 RKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 8763 5577888888888888888888766542 3456667788888888888888888888777643 33
Q ss_pred CHhHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH-------------
Q 040279 472 TVVTYSIMIHGLCRK--GKLEKANDFLLYMEKNGCAP------NVVTFNTLMHGFLQNNKTSKVVEL------------- 530 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~------------- 530 (626)
+...|..+...|++. ++..++.+.|..-. +++| +...|..+...|.+.|+++.|...
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~ 1390 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 1390 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHH
Confidence 455676666666664 23334444443222 2222 456788888888888888888732
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHHccC---------------CHhHHHHHHHH
Q 040279 531 LHKMAEPERNLVPDDTTFSIVVDLLAKDE---------------KYHECSAVSKS 570 (626)
Q Consensus 531 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 570 (626)
|+..+. -..+.+.|...+..|...+ +++++.+++++
T Consensus 1391 Fk~~i~----kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1391 FKDIIT----KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHhc----ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 222222 2336677777777776666 77777777663
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=6.9e-18 Score=166.14 Aligned_cols=309 Identities=10% Similarity=-0.094 Sum_probs=220.1
Q ss_pred HHHhcCCcchHHH-HHHHHhhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 040279 202 SLCKEGLVDKAKE-LFLEMKGRGI---NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 202 ~~~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (626)
++...|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++++..+. +..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 5667799999998 8887665421 113567889999999999999999999999987543 7788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 278 KINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYR 357 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (626)
++++|...++++.+.. +.+..++..+...+...|++++|...++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 9999999999999875 447788999999999999999999999999987432 22222211100 00
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 040279 358 QIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVE-PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF 436 (626)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 436 (626)
. .. ....+..+...+ ..|++++|...++++.+.... ++..++..+...+...|++++|...++.+.... +.
T Consensus 178 -~----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 011111222223 677888888888887764311 146777888888888888888888888877654 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN--------- 507 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------- 507 (626)
+...+..+...+...|++++|...|+++.+.. +.+..++..++.+|.+.|++++|.+.|+++.+.. +.+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 327 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGA 327 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccc
Confidence 67788888888888899999998888887742 3357788888889999999999999998887642 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 508 --VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 508 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+|..+..+|...|++++|..++++.++
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 57888899999999999999888775543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=3.2e-18 Score=168.32 Aligned_cols=263 Identities=8% Similarity=-0.044 Sum_probs=164.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ 380 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (626)
+..+...+.+.|++++|...|+++.+... .+...+..+..++...|++++|+..|+++.+.. +.+...+..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 33333444444444444444444443321 133344444444444444444444444444431 1233444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHH
Q 040279 381 AGQAGYAQKLFDEMKLYNV---------EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE-FGIEIFNCLIDGLCK 450 (626)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 450 (626)
.|++++|...++++.+... ......+..+...+...|++++|...++++...... .+..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 4444444444444443210 001223444567788888899999999888766422 167888888899999
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
.|++++|+..|+++.+.. +.+..+|..++.+|...|++++|++.|+++.+.. +.+..++..++.+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988752 3467889999999999999999999999998863 44578888999999999999999999
Q ss_pred HHHhhcCCCCCCCC-------------HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 531 LHKMAEPERNLVPD-------------DTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
++++++ +.|+ ...|..+..++...|+.+.+.+..++.
T Consensus 304 ~~~al~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALS----LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHH----HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHH----hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999877 3333 567889999999999999888877663
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.4e-18 Score=161.93 Aligned_cols=381 Identities=13% Similarity=0.065 Sum_probs=176.8
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 128 CVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
.+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCC
Confidence 35678999999999983 3359999999999999999999999763 45668999999999999
Q ss_pred CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040279 208 LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (626)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877764 4567889999999999999999988884 3577799999999999999999999999
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040279 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT 367 (626)
Q Consensus 288 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (626)
.+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 76 37899999999999999999999988 278999999999999999999966555422 24
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN--NCVQEAVKLFHMLEMNKFEF------GIE 439 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 439 (626)
+.....++..|.+.|++++|..+++...... +.....|+.+...|++- ++..+.++.|.. ..++++ +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4445578899999999999999999998765 55667788777777764 344455555531 122222 467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCC-----------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKG-----------LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
.|..++-.|.+.++++.|....-+-...- -..+...|...+..|... ...++.-+.......+ |.
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~l--d~ 359 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRL--DH 359 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGC--CH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcc--Cc
Confidence 88999999999999999887654432210 012344454555444421 1122222222221111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 509 VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+..+..+.+.|+..-+..++..... .-+..+=..+-..|....+++.-..-++.
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~-----~n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQN-----HNNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHT-----TCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2233344455555555555554443 11233334555667777777666555554
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=6.1e-17 Score=156.41 Aligned_cols=278 Identities=11% Similarity=-0.033 Sum_probs=194.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040279 263 LLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILING 342 (626)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (626)
...+......+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666666777777777777766653 2355556666666666677777776666666653 2245556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCHH
Q 040279 343 YCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNIL-ID-GLCKNNCVQ 420 (626)
Q Consensus 343 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~ 420 (626)
+...|++++|+..++++.+.... +...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666666666654211 12222111000 0111111112 22 266778899
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYME 500 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (626)
+|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|.+.++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998888665 4577888999999999999999999999988753 3357889999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-------------HHHHHHHHHHHHccCCHhHHHHH
Q 040279 501 KNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-------------DTTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 501 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
+.. +.+..++..+..++...|++++|.+.++++.+ +.|+ ...+..++.++.+.|++++|.++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY----MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 864 55678899999999999999999999999987 4555 57788999999999999999999
Q ss_pred HHHHH
Q 040279 568 SKSSY 572 (626)
Q Consensus 568 ~~~~~ 572 (626)
++++.
T Consensus 309 ~~~~l 313 (327)
T 3cv0_A 309 YAQNV 313 (327)
T ss_dssp TTCCS
T ss_pred HHHHH
Confidence 98764
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.4e-16 Score=158.82 Aligned_cols=363 Identities=11% Similarity=-0.034 Sum_probs=237.4
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC-----C---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR-----G---INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG--- 258 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--- 258 (626)
+.....|+.|...+...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667899999999999999999999887542 1 12235678999999999999999999998876521
Q ss_pred ---CC-CChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHH---HHhcCChHHHHHHHHHHHhcCC
Q 040279 259 ---PR-PNLLTFNVMIDCLCK--GGKINEANGLLELMIQRGLNPDRFTYNSLMDG---YCLVGRIDTAREIFLSMHSKGC 329 (626)
Q Consensus 259 ---~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~ 329 (626)
.. ....++.....++.. .+++++|...|++..+... -+...+..+..+ +...++.++|++.+++..+...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 01 123455555555544 4579999999999988742 244455444444 3456788899999998887742
Q ss_pred CCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040279 330 KHTVVSYNILINGYCK----ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLST 405 (626)
Q Consensus 330 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 405 (626)
.+...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..+
T Consensus 207 -~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 -DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp -SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred -cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 255566655555544 467889999999988763 4467788889999999999999999999998753 345556
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 406 YNILIDGLCKN-------------------NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 406 ~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+..+..+|... +..++|...++...... +.+...+..+...+...|++++|+..|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555321 23456667776666544 44566677778888888888888888888776
Q ss_pred CCCCCCH--hHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 467 KGLVPTV--VTYSIMIH-GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 467 ~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
....+.. ..+..+.. .....|++++|++.|++..+. .|+...... ....+.+++++.++ ..|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~----~~p 427 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLS----KNG 427 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHH----HCC
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHH----hCC
Confidence 4322221 12223322 234567888888888888774 444332221 22344555666655 445
Q ss_pred -CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 544 -DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 544 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+..++..++.+|...|++++|.+.|++++
T Consensus 428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC----------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888888888888888888888875
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.8e-16 Score=158.56 Aligned_cols=369 Identities=11% Similarity=-0.053 Sum_probs=251.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC-----C
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYE--NGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR-----G 223 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 223 (626)
....|+.+...+...|++++|++.|++.++.... .....+....+|..+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567899999999999999999999987652100 00002345678999999999999999999999887642 1
Q ss_pred -CC-CCcchHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCC
Q 040279 224 -IN-PAVVVCTTLIHGFCC--AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDC---LCKGGKINEANGLLELMIQRGLNP 296 (626)
Q Consensus 224 -~~-~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 296 (626)
.. ....++..+..++.. .+++++|++.|++.++..+. +...+..+..+ +...++.++|+..+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 01 123456665555554 45799999999999986543 45555555444 345677888999999888764 33
Q ss_pred CHhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 040279 297 DRFTYNSLMDGYCL----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN 372 (626)
Q Consensus 297 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 372 (626)
+...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|+..++++.+.. +.+...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55555555544444 467889999999988875 3367788899999999999999999999999863 33566666
Q ss_pred HHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 373 TLLSGLFQA-------------------GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK 433 (626)
Q Consensus 373 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (626)
.+...|... +..+.|...++...+.. +.+...+..+...+...|++++|...|++.....
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666555332 23567777888776643 3445678888999999999999999999988765
Q ss_pred CCcCHH--HHHHHHH-HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040279 434 FEFGIE--IFNCLID-GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVT 510 (626)
Q Consensus 434 ~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (626)
..+... .+..+.. .....|++++|+..|++..+. .|+...... ....+.++++...+.+ +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHH
Confidence 433221 2333332 234679999999999999874 455433222 2344556666666654 667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|..++.+|...|++++|++.|+++++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999998
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=7.7e-17 Score=151.76 Aligned_cols=273 Identities=11% Similarity=0.077 Sum_probs=183.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 040279 272 CLCKGGKINEANGLLELMIQRGLNPDR--FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNV 349 (626)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (626)
-....|++..|+..++..... .|+. .....+..+|...|+++.|+..++.. .+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 344567777777766655433 2222 23345566777777777777655431 234556667777777777777
Q ss_pred HHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 350 EEAMSLYRQIISNGV-RQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHM 428 (626)
Q Consensus 350 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (626)
++|++.++++...+. +.+...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888877776653 33445556666777778888888877776 35666777777888888888888888887
Q ss_pred HHHCCCCcCHHH---HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 429 LEMNKFEFGIEI---FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCA 505 (626)
Q Consensus 429 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (626)
+.... |+... ...++..+...|++++|..+|+++.+. .+.+...|+.++.++.+.|++++|.+.++++.+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 77653 23211 112233344457888888888888876 34567788888888888888888888888888764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 040279 506 PNVVTFNTLMHGFLQNNKTSK-VVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
.+..++..++..+...|+.++ +.++++++.+ +.|+..... +...+.+.++++..-
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~----~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD----AHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCCChHHH---HHHHHHHHHHHHHHH
Confidence 567788888888888888865 5678888887 777654432 234445555555443
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=7.1e-17 Score=158.66 Aligned_cols=269 Identities=10% Similarity=-0.070 Sum_probs=133.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040279 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDG 307 (626)
Q Consensus 228 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 307 (626)
...+..+...+.+.|++++|+..|+++++..+. +..++..+...+...|++++|...|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555666666666666666666666554322 45556666666666666666666666665542 2234555555566
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKH---------TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGL 378 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (626)
|...|++++|...++++.+..... ....+..+...+...|++++|+..++++.+.....
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------ 210 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM------------ 210 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS------------
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc------------
Confidence 666666666666666655532100 01111222344444444455555444444431110
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW 458 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (626)
++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|+
T Consensus 211 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 211 ----------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 034444444444555555555555555444332 334445555555555555555555
Q ss_pred HHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHH
Q 040279 459 ELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-----------APNVVTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~a 527 (626)
..|+++.+.. +.+..++..++.+|...|++++|.+.|+++.+... ..+...|..+..++...|+.+.+
T Consensus 268 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 268 EAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 5555555431 12345555555555555666666555555554210 00244566666666666666666
Q ss_pred HHHHHHh
Q 040279 528 VELLHKM 534 (626)
Q Consensus 528 ~~~~~~~ 534 (626)
....++.
T Consensus 347 ~~~~~~~ 353 (365)
T 4eqf_A 347 QAANLGD 353 (365)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 6665543
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.2e-16 Score=150.28 Aligned_cols=345 Identities=14% Similarity=0.023 Sum_probs=154.6
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|.++++++ +. +.+|..|+.++.+.|++++|++.|.+. +|...+..++ ..+...|++
T Consensus 17 ~~ld~A~~fae~~----~~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~-------~~ae~~g~~ 77 (449)
T 1b89_A 17 GNLDRAYEFAERC----NE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVV-------QAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC----CC--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHH-------HHHHhCCCH
Confidence 4799999999998 33 358999999999999999999999754 4555676665 456678999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHH
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 213 (626)
++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|.
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------------CC----------------CTTTHH
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988877764 4567888999999999999999887774 245569999999999999999999
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040279 214 ELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRG 293 (626)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 293 (626)
..|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----- 202 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH----- 202 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----
Confidence 999976 47999999999999999999999988 2788999999999999999999665443
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC------
Q 040279 294 LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN-GVRQ------ 366 (626)
Q Consensus 294 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------ 366 (626)
+...+.....++..|.+.|.+++|..+++...... +.....|+-+.-+|++- ++++.++.++..... +++|
T Consensus 203 L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 203 IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 22344445578889999999999999999988765 34566777777777763 444444444433221 1222
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...|..+.-.|...++++.|... |.++ +++..-...+.+...+..+.+--.+...-..+. .+...+.|+.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~ 351 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLM 351 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456677777778888888877663 3332 222222222333334444444333333322211 2233555555
Q ss_pred HHHHcCCHHHHHHHHHh
Q 040279 447 GLCKAGRLDNAWELFHK 463 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~ 463 (626)
++...=+...+..+|++
T Consensus 352 ~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 352 VLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHGGGCCHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHH
Confidence 55544455555444443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.8e-16 Score=152.99 Aligned_cols=282 Identities=10% Similarity=-0.087 Sum_probs=208.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040279 227 AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMD 306 (626)
Q Consensus 227 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 306 (626)
+...+..+...+...|++++|..+|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 4567788889999999999999999999887543 77888899999999999999999999999874 446778889999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHHcCCH
Q 040279 307 GYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS--GLFQAGQA 384 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 384 (626)
.+...|++++|.+.++++.+.... +...+..+.... ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999987432 333333321110 11111112212 25556677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776543 3356677777777778888888888887776554 456777888888888888888888888888
Q ss_pred ccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 465 PQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP-----------NVVTFNTLMHGFLQNNKTSKVVELLHK 533 (626)
Q Consensus 465 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 533 (626)
.+.. +.+..++..++.++...|++++|.+.++++.+..... +..++..+..++...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7742 3357788888888889999999999998887753111 366888888899999999999988887
Q ss_pred hhc
Q 040279 534 MAE 536 (626)
Q Consensus 534 ~~~ 536 (626)
.++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.1e-16 Score=148.74 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=201.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 305 MDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 305 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
++-....|++..|+..++................+.++|...|+++.|+..++.. .+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 3445678999999999887655422211335566788999999999999877552 355677888888899999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 385 GYAQKLFDEMKLYNVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
++|.+.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998766444 556677777899999999999999986 56788899999999999999999999999
Q ss_pred cccCCCCCCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 040279 464 LPQKGLVPTVVTY---SIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERN 540 (626)
Q Consensus 464 ~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 540 (626)
+.+. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...++++++
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---- 228 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD---- 228 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 9885 3553211 122334445689999999999999873 67888999999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhH-HHHHHHHHH
Q 040279 541 LVP-DDTTFSIVVDLLAKDEKYHE-CSAVSKSSY 572 (626)
Q Consensus 541 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 572 (626)
..| +..++..++.++...|+.++ +.++++++.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 678 57889999999999999976 578888886
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=1.4e-15 Score=152.87 Aligned_cols=337 Identities=14% Similarity=0.029 Sum_probs=192.0
Q ss_pred chHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH---H
Q 040279 210 DKAKELFLEMKGRGINPAVVVCTTLIHGFCCAG-----NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKIN---E 281 (626)
Q Consensus 210 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~ 281 (626)
++|.+.|++..+. +...+..|...+...+ ++++|+..|++..+.|. ...+..+...|...+..+ +
T Consensus 55 ~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~ 127 (452)
T 3e4b_A 55 KQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVN 127 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCC
T ss_pred HHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHH
Confidence 4555555444432 3334444444333332 45555555555555432 224444555554443322 2
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL---NVEEAMSLYRQ 358 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~ 358 (626)
+...+......| +......+...|...+.++.+......+...-...+...+..+...|...| +.++|+..|++
T Consensus 128 a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 128 AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEA 204 (452)
T ss_dssp HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 333344443333 233444555566666644444333222222211223446667777777777 77777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHH
Q 040279 359 IISNGVRQTVITYNTLLSGLFQA----GQAGYAQKLFDEMKLYNVEPDLSTYNILIDG-L--CKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~ 431 (626)
..+.|. ++...+..+...|... +++++|...|++.. . -+...+..+... + ...+++++|...|++..+
T Consensus 205 aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 205 GVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 777653 2444445555555443 57778888887776 3 234455555555 3 357888888888888877
Q ss_pred CCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 040279 432 NKFEFGIEIFNCLIDGLCKAG-----RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKN 502 (626)
Q Consensus 432 ~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 502 (626)
.+ +...+..+...|. .| ++++|.++|++.. . -+...+..|...|.. ..++++|...|++..+.
T Consensus 280 ~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 280 AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 65 5666777777776 55 8899999999888 3 367777788877776 34899999999998887
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhc
Q 040279 503 GCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 575 (626)
| +......|...|.. ..+..+|..+|+++.+ .|. ++.......+......++.++|.++.++.....
T Consensus 352 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 352 G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA--QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT--TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 6 34456667776664 4588999999999987 442 222222222333345667888888888766553
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=9.2e-15 Score=146.99 Aligned_cols=346 Identities=11% Similarity=0.007 Sum_probs=224.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNW---EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK 275 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (626)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566677788888888888887765 455666666777777777 8899988888754 55566667765555
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040279 276 GG-----KINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRI---DTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347 (626)
Q Consensus 276 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (626)
.+ ++++|...|++..+.|.. ..+..|...|...+.. ..+.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 54 678899999988887633 3566677777765543 34555555555554 4566777777787777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHH
Q 040279 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG---QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN----NCVQ 420 (626)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 420 (626)
.++++......+.+.-...++..+..+...|...| +.++|...|++..+.| .++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 54444433322222212224447778888888888 8889999999888876 55666556666666554 6889
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHH-H--HHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC-----CHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDG-L--CKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG-----KLEKA 492 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A 492 (626)
+|..+|+... +-+...+..+... + ...+++++|+++|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999998877 3456666677666 3 46789999999999988765 6777888888877 45 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHc----cCCHhHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAK----DEKYHEC 564 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 564 (626)
.+.|++.. .| +...+..+...|.. ..++++|...|+++.+ .| +......++..|.. ..+.++|
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99998887 33 66777777777766 3488999999999887 33 34566677777764 4588888
Q ss_pred HHHHHHHHhhc
Q 040279 565 SAVSKSSYRAC 575 (626)
Q Consensus 565 ~~~~~~~~~~~ 575 (626)
..+++.+...+
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 88888876544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=3.3e-15 Score=134.28 Aligned_cols=198 Identities=15% Similarity=0.017 Sum_probs=137.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 366 QTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 366 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
++...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344555666666666677777776666666543 3455566666666666777777777776666554 44556666666
Q ss_pred HHHHHc-----------CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040279 446 DGLCKA-----------GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTL 514 (626)
Q Consensus 446 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (626)
.++... |++++|+..+++..+.. +.+...|..+..++...|++++|++.|+++.+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 89999999999888752 2357788888899999999999999999998876 678888899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..++...|++++|+..++++++ +.| +...+..++.++...|++++|.+.+++.+
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE----QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999988 677 56778888999999999999999988864
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-14 Score=133.68 Aligned_cols=222 Identities=10% Similarity=0.012 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----hhhHHHH
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVR--QT----VITYNTL 374 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~l 374 (626)
+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|+..++++.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444443 33444444444444444444444444444432100 01 2334444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRL 454 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (626)
...+...|++++|...++++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 44444444444444444444432 1221 12233344444444444444332 22333444444444444445
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
++|...++++.+.. +.+..+|..++.++...|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55544444444421 1234444444444444455555555554444432 223444444444444445555554444444
Q ss_pred hc
Q 040279 535 AE 536 (626)
Q Consensus 535 ~~ 536 (626)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-14 Score=133.60 Aligned_cols=224 Identities=9% Similarity=0.024 Sum_probs=193.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV--EPD----LSTY 406 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 406 (626)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...+++..+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888899999999999999999999886 6888999999999999999999999999876321 112 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
..+...+...|++++|...++...... |+. ..+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 889999999999999999999988753 332 45667789999999999998752 23467888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 487 GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
|++++|.+.++++.+.. +.+..++..++.++...|++++|...++++++ ..| +...+..++.++.+.|++++|.
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999874 55788999999999999999999999999998 566 4788999999999999999999
Q ss_pred HHHHHHHh
Q 040279 566 AVSKSSYR 573 (626)
Q Consensus 566 ~~~~~~~~ 573 (626)
+.++++.+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.1e-14 Score=130.79 Aligned_cols=200 Identities=15% Similarity=0.041 Sum_probs=126.6
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCc
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (626)
+++...+..+...+.+.|++++|+..|+++++.+ |.+...+..+...+.+.|++++|+..+++..+.. +.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 4556667777777777777777877777777765 5667777777777777777777777777777653 3345
Q ss_pred chHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040279 229 VVCTTLIHGFCCA-----------GNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD 297 (626)
Q Consensus 229 ~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (626)
..+..+...+... |++++|+..|++.++..+. +...+..+...+...|++++|+..|++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 6677777777777 7777777777777665333 45566666777777777777777777776665 46
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
...+..+..++...|++++|...|++..+... .+...+..+..++...|++++|+..+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666777777777777777777666532 245556666666666777777766666554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=7.4e-14 Score=130.70 Aligned_cols=234 Identities=9% Similarity=-0.002 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD--LSTYNILID 411 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 411 (626)
..+......+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..+....++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677778888888888888887763 23455777778888888888888888888877321222 334778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
.+...|++++|...++...+.. +.+..++..+...|...|++++|...+++..+.. +.+...|..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888765 4567889999999999999999999999999862 3457788888834445569999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCCC------HHHHHHHHHHHHccCCHh
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK---TSKVVELLHKMAEPERNLVPD------DTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~ 562 (626)
|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+. ..-.|+ ...+..++..|...|+++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV-CAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999864 4457788888888888888 88899999998771 111143 257888999999999999
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|.+.++++.
T Consensus 239 ~A~~~~~~al 248 (272)
T 3u4t_A 239 KADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999997
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=161.26 Aligned_cols=166 Identities=15% Similarity=0.200 Sum_probs=133.8
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhh---CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG---RGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTF 266 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 266 (626)
..-..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34567899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hhhHHHH
Q 040279 267 NVMIDCLCKGGKI-NEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHT------VVSYNIL 339 (626)
Q Consensus 267 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l 339 (626)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ ..+..|+ ..+...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999984 78999999999999999999999988655443 333444443 2233333 4455566
Q ss_pred HHHHHhcC---------ChHHHHHHHHHHH
Q 040279 340 INGYCKIL---------NVEEAMSLYRQII 360 (626)
Q Consensus 340 ~~~~~~~~---------~~~~A~~~~~~~~ 360 (626)
.+.|.+.+ ..++-.++|++-+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 67776554 2455556665544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=7.2e-13 Score=123.99 Aligned_cols=221 Identities=11% Similarity=-0.070 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ----AGQAGYAQKLFDEMKLYNVEPDLSTYN 407 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (626)
+...+..+...+...+++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666666777777777777777777763 244566666777777 777777777777777654 556667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCCCCHhHHHHH
Q 040279 408 ILIDGLCK----NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK----AGRLDNAWELFHKLPQKGLVPTVVTYSIM 479 (626)
Q Consensus 408 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (626)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888887777654 56677777777777 788888888888887754 56677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040279 480 IHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTFSIV 551 (626)
Q Consensus 480 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 551 (626)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...++++.+ ..| ...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~----~~~-~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE----LEN-GGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----TTC-HHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh----CCC-HHHHHHH
Confidence 777777 788888888888888754 56677778888888 8888888888888887 333 6677788
Q ss_pred HHHHHc----cCCHhHHHHHHHHHH
Q 040279 552 VDLLAK----DEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~----~g~~~~A~~~~~~~~ 572 (626)
+.+|.. .|++++|.++++++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHH
Confidence 888888 888888888888875
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=6.1e-14 Score=131.27 Aligned_cols=247 Identities=12% Similarity=0.025 Sum_probs=141.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT--VITYNTLLSGL 378 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 378 (626)
+......+...|++++|...|+++.+... .+...+..+..++...|++++|+..++++.+.+..++ ...+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 33444555555666666666666555432 1334555555566666666666666666655321111 12255556666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW 458 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (626)
...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665532 2344566666666667777777777776665543 445555555552333445777777
Q ss_pred HHHHhcccCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 040279 459 ELFHKLPQKGLVPTVVTYSIMIHGLCRKGK---LEKANDFLLYMEKNG-CAPN------VVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~ 528 (626)
+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..++..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777776642 2235566666667766666 666777777766531 1122 145666777777788888888
Q ss_pred HHHHHhhcCCCCCCCC-HHHHHHHHHHH
Q 040279 529 ELLHKMAEPERNLVPD-DTTFSIVVDLL 555 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 555 (626)
+.++++++ +.|+ ......+....
T Consensus 242 ~~~~~al~----~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNILA----LDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHH----HCTTCHHHHHHHC---
T ss_pred HHHHHHHh----cCccHHHHHHHhhhhh
Confidence 88888777 6664 44454444443
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=8.2e-16 Score=159.29 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEM---NKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIM 479 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (626)
..||+++|++|++.|++++|..+|+.|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 245566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 480 IHGLCRKGK-LEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 480 ~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666555 355566666666666666666666555443
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.6e-12 Score=121.53 Aligned_cols=221 Identities=11% Similarity=-0.080 Sum_probs=142.8
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----ILNVEEAMSLYRQIISNGVRQTVITYNT 373 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 373 (626)
...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344455555555666666666666665552 244555555566666 666666666666666553 4555566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 374 LLSGLFQ----AGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK----NNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 374 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 6666666 666666666666666543 45556666666666 677777777777666654 445566666
Q ss_pred HHHHH----cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 446 DGLCK----AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 446 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66666 677777777777776642 45666677777777 777777777777777753 25566677777
Q ss_pred HHh----cCCHHHHHHHHHHhhc
Q 040279 518 FLQ----NNKTSKVVELLHKMAE 536 (626)
Q Consensus 518 ~~~----~g~~~~a~~~~~~~~~ 536 (626)
|.. .+++++|.+.++++.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHH
Confidence 777 7777777777777776
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.7e-11 Score=127.28 Aligned_cols=427 Identities=11% Similarity=0.014 Sum_probs=293.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC---cc
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL---VD 210 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~ 210 (626)
.+-+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++..- |.....|...+....+.++ ++
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHH
Confidence 34454556655554 5689999999999999999999999999999874 7778889988998888888 99
Q ss_pred hHHHHHHHHhhCC-CCCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-hhhHHHHHHHHHh---
Q 040279 211 KAKELFLEMKGRG-INPAVVVCTTLIHGFCCAGNW--------EEVNGLFIEMLD-LGP-RPN-LLTFNVMIDCLCK--- 275 (626)
Q Consensus 211 ~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--- 275 (626)
.+.++|++..... .+|++..|...+......++. +...++|+..+. .|. .++ ...|...+.....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999999998863 137888888887765554442 344577777654 354 443 4577777765432
Q ss_pred ------cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-------------cCChHHHHHHHHHHHhc--CCC---C
Q 040279 276 ------GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL-------------VGRIDTAREIFLSMHSK--GCK---H 331 (626)
Q Consensus 276 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~--~~~---~ 331 (626)
.++++.+..+|++++......-..+|......-.. ..+++.|...+.++... ++. |
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 34567788999998864222112233221111101 12234455555443321 111 0
Q ss_pred C--------------------hhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 332 T--------------------VVSYNILINGYCKIL-------NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 332 ~--------------------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
. ...|...+..--..+ ..+.+..+|++++.. ++.....|...+..+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 123455554433322 124456788888876 455788888888888889999
Q ss_pred HHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc------------CHHHHH
Q 040279 385 GYAQ-KLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKF---------EF------------GIEIFN 442 (626)
Q Consensus 385 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~------------~~~~~~ 442 (626)
++|. ++|+..... ++.+...+...+....+.|+++.|..+|+.+..... .| ...+|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8996 999999874 355666677788888899999999999998875310 12 234688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK-GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
..+....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. .+.+...|...+......
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 88888888999999999999998751122344554444333344 4589999999999986 455677777888888889
Q ss_pred CCHHHHHHHHHHhhcCCCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 522 NKTSKVVELLHKMAEPERNLVP--DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
|+.+.|..+|++++. ....+ ....|...+..-.+.|+.+.+.++.+++..
T Consensus 518 ~~~~~AR~lferal~--~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 518 NEESQVKSLFESSID--KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp TCHHHHHHHHHHHTT--TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998 22212 245688888888889999999999999974
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.3e-14 Score=133.29 Aligned_cols=155 Identities=10% Similarity=-0.058 Sum_probs=73.4
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|+..|+++++.. +.+..++..+...+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccccHHHHHHHHHH
Confidence 344555555555555555555542 2244555555555555555555555555555543 33344555555555
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
...|++++|.+.|+++.+. .|+.......+..+...|++++|...+++...... ++...+ .++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHH
Confidence 5555555555555555543 22332233333333444555555555544444321 122222 2333444444444455
Q ss_pred HHHHHHH
Q 040279 284 GLLELMI 290 (626)
Q Consensus 284 ~~~~~~~ 290 (626)
..++...
T Consensus 198 ~~~~~~~ 204 (275)
T 1xnf_A 198 ERLKADA 204 (275)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 5444443
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.9e-14 Score=132.86 Aligned_cols=250 Identities=11% Similarity=0.007 Sum_probs=168.8
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 126 GLCVENRIKEATWLFKNMIAFGV---RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.+...|++++|+..|+++.+... +.+..++..++..+...|++++|+..|+++...+ +.+..++..+...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~ 86 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIY 86 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHH
Confidence 45567889999999999987632 1245678888899999999999999999988865 5677888888888
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|...|+++.+.. |+.......+..+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHH
Confidence 999999999999999888763 3356788888888888888888888888888753 3333344444455666888888
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCK---HTVVSYNILINGYCKILNVEEAMSLYRQI 359 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (626)
...++...... +++...+ .++..+...++.++|...++........ .+...+..+...+...|++++|...|+++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887766653 2233333 3556666677777777777776554211 01355666666666777777777777776
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 360 ISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
.+.. |+. +.....++...|++++|.+.+
T Consensus 242 l~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6542 211 122233445555555555444
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=2.8e-13 Score=131.74 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=177.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC-HHHHHHHHHHHHHCCCCCCHh
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR-IKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 153 (626)
..+|+.+...+.+.|++++|+..|+++++. .|+....-..+ +..+...|+ +++|+..|+++++.. +.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~------g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~ 167 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFR------RVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHH------HHHHHHcccCHHHHHHHHHHHHHHC-CCCHH
Confidence 457888888888888899999988888876 56544332222 356677786 888888888888874 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
+|..+..++...|++++|+..|++++..+ +.+..+|..+..++.+.|++++|++.++++.+.. +-+...|+.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~ 239 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQ 239 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 88888888888888888888888888876 6778888888888888888888888888888764 336678888
Q ss_pred HHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040279 234 LIHGFCC-AGNWEEV-----NGLFIEMLDLGPRPNLLTFNVMIDCLCKGG--KINEANGLLELMIQRGLNPDRFTYNSLM 305 (626)
Q Consensus 234 li~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll 305 (626)
+..++.. .|..++| ++.|++.+...+. +...|+.+...+...| ++++|...+..+ +. .+.+...+..+.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence 8888888 5554666 4777777776443 5667777777777776 577888777776 33 233556667777
Q ss_pred HHHHhcC---------ChHHHHHHHHHH-HhcCCCCChhhHHHHHHHH
Q 040279 306 DGYCLVG---------RIDTAREIFLSM-HSKGCKHTVVSYNILINGY 343 (626)
Q Consensus 306 ~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 343 (626)
.+|.+.| ..++|.++|+++ .+.+ +.....|..+...+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 7777653 247777777777 4442 11233444444433
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=5.3e-13 Score=123.27 Aligned_cols=197 Identities=10% Similarity=0.011 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGL 448 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (626)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555556666666666666666665542 3345566666666777777777777776666543 34566667777777
Q ss_pred HHcCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 527 (626)
...|++++|.++++++.+.+..| +...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776622233 35566777777777778888888777777653 34566777777777778888888
Q ss_pred HHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 528 VELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 528 ~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...++++.+ ..| +...+..++.++...|++++|.++++++.
T Consensus 195 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQ----GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHT----TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888887776 444 45667777777777888888888877775
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=4.3e-11 Score=124.22 Aligned_cols=443 Identities=11% Similarity=0.047 Sum_probs=267.9
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHhhhhhhhhhhhcCC--
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPD-FLTLNILINCFGNKERGLCVENR-- 132 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~l~~~~~~~~~-- 132 (626)
.++.+..|++.+..+|. |..+|..++..+.+.+.++.+..+|++++.. .|. ...|...+. .-.+.++
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~-------~E~~~~~~~ 117 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLS-------LEFDKMEEL 117 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH-------HHHTC--CC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHH-------HHHhhCCcc
Confidence 55667778888888775 9999999999999999999999999999976 443 344444442 3455677
Q ss_pred -HHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCh--------HHHHHHHHHHHhC-CCCCCccccccHHHHHHHHH
Q 040279 133 -IKEATWLFKNMIAFG-VRPDVITYGTLINGFCRTGNL--------SVALRLHKKMVSG-DYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 133 -~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 201 (626)
++.+..+|++.+... .+|+...|...+....+.++. +...++|+.++.. |. -.+.+...|...+.
T Consensus 118 ~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~----~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 118 DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAI----FEPKSIQFWNEYLH 193 (679)
T ss_dssp CHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTT----TCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCc----ccccchHHHHHHHH
Confidence 999999999999873 138888999888877665554 3445788887653 20 00234567777776
Q ss_pred HHHh---------cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHH-------------hcCCHHHHHHHHHHHHHC--
Q 040279 202 SLCK---------EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFC-------------CAGNWEEVNGLFIEMLDL-- 257 (626)
Q Consensus 202 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~~~~~-- 257 (626)
.... .++++.+..+|++........-..+|......-. ...+++.|...+.++...
T Consensus 194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6543 3457789999999886311111123322111100 112234445555443211
Q ss_pred CCC---CC--------------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040279 258 GPR---PN--------------------LLTFNVMIDCLCKGG-------KINEANGLLELMIQRGLNPDRFTYNSLMDG 307 (626)
Q Consensus 258 ~~~---~~--------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 307 (626)
++. |. ...|...+..--..+ ..+.+..+|++.+.. ++-....|...+..
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANY 352 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 110 00 123334443322221 123345567776665 34466667666776
Q ss_pred HHhcCChHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC----------
Q 040279 308 YCLVGRIDTAR-EIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV---------RQT---------- 367 (626)
Q Consensus 308 ~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~---------- 367 (626)
+...|+.+.|. .+|++.... ++.+...|-..+....+.|+++.|.++|+++..... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 77777777775 778777764 233555566667777777888888888877765310 021
Q ss_pred --hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 040279 368 --VITYNTLLSGLFQAGQAGYAQKLFDEMKLY-NVEPDLSTYNILIDGLCKN-NCVQEAVKLFHMLEMNKFEFGIEIFNC 443 (626)
Q Consensus 368 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ 443 (626)
...|...+....+.|..+.|..+|....+. + ......|...+..-.+. ++.+.|.++|+...+. .+.+...+..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 234666666666677777888888777664 2 11222333222222233 3477888888776654 2445666667
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVP--TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.++.....|+.+.|..+|++.......+ ....|...+..-...|+.+.+.++.+++.+. .|+......+..-|
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 7777777778888888888777653211 2456777777777778888888888777775 34444444444433
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=5e-13 Score=123.44 Aligned_cols=197 Identities=13% Similarity=0.018 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 336 YNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3344444444444444444444444431 2233444444444555555555555555544432 2234444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKAND 494 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 494 (626)
.|++++|..+++.+...+. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544111 2234445555555666666666666666655532 2235555666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 495 FLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666665542 33455555566666666666666666666665
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=8.9e-14 Score=127.68 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 334444555555556666666666655553 22244555555555566666666666666555432 2344555555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666555443 3345555666666666666666666666665531 22455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.++++.+.. +.+..++..+..++...|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 66666666542 33455666666666666666666666666665
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=3.5e-13 Score=131.03 Aligned_cols=246 Identities=9% Similarity=0.002 Sum_probs=152.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 300 TYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN-VEEAMSLYRQIISNGVRQTVITYNTLLSGL 378 (626)
Q Consensus 300 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (626)
.|..+...+...|++++|+..++++.+.... +...|+.+..++...|+ +++|+..|+++++.. +.+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444555555666666666666666655322 45556666666666664 666666666666652 22555666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH-cCCHHHH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK-AGRLDNA 457 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 457 (626)
...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 66666666666666666543 3355566666666666777777777777666554 4456666666666666 4444555
Q ss_pred -----HHHHHhcccCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 040279 458 -----WELFHKLPQKGLVPTVVTYSIMIHGLCRKG--KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN-------- 522 (626)
Q Consensus 458 -----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 522 (626)
+..+++++... +-+...|+.+..++...| ++++|++.+.++ +. .+.+...+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 46677766642 224667777777777766 577777777776 33 2445567777777777653
Q ss_pred -CHHHHHHHHHHh-hcCCCCCCCC-HHHHHHHHHHHH
Q 040279 523 -KTSKVVELLHKM-AEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 523 -~~~~a~~~~~~~-~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
..++|+++++++ .+ +.|. ...|..++..+.
T Consensus 332 ~~~~~A~~~~~~l~~~----~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKE----KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hCchhHHHHHHHHHHHH
Confidence 247788888887 66 6674 445555555443
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=9e-13 Score=119.20 Aligned_cols=200 Identities=10% Similarity=-0.057 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3344445555555555555555555555432 2234445555555555555555555555554432 2344455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 413 LCKN-NCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 413 ~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
+... |++++|...++.+...+. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 666666666655554111 1224455555555666666666666666655532 123555556666666666666
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 491 KANDFLLYMEKNGCA-PNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+|.+.++++.+.. + .+...+..+...+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666665542 2 3444555555555566666666666666554
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.5e-13 Score=126.10 Aligned_cols=198 Identities=11% Similarity=0.033 Sum_probs=158.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44567777888899999999999999998753 4567888899999999999999999999988765 557888999999
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (626)
.+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998853 3467889999999999999999999999998864 5578889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 527 VVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
|...++++.+ ..| +..++..++.++...|++++|.+.++++.
T Consensus 178 A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 178 ALSQFAAVTE----QDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999988 556 57889999999999999999999999996
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.2e-12 Score=118.36 Aligned_cols=199 Identities=11% Similarity=-0.009 Sum_probs=169.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677888889999999999999999988753 4567788889999999999999999999888764 557788899999
Q ss_pred HHHHc-CCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 447 GLCKA-GRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 447 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (626)
.+... |++++|...++++.+.+..|+ ...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999987322333 6778889999999999999999999998864 44678889999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 525 SKVVELLHKMAEPERNLVP--DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++|...++++.+ ..| +...+..+...+...|+.++|..+++.+.
T Consensus 164 ~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQS----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHH----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999987 445 56677777888899999999999999985
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1e-13 Score=138.41 Aligned_cols=272 Identities=11% Similarity=0.027 Sum_probs=163.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CCCChhhH
Q 040279 266 FNVMIDCLCKGGKINEANGLLELMIQRGLNPDR----FTYNSLMDGYCLVGRIDTAREIFLSMHSK----G-CKHTVVSY 336 (626)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~ 336 (626)
+..+...+...|++++|...++++.+.+.. +. ..+..+...+...|++++|...+++..+. + .+.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445555566666666666665554211 21 23444555555555555555555554432 0 01112333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN-VEPDLSTYNILIDGLCK 415 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 415 (626)
..+...|...|++++|+..++++.+.. ...+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433210 0000 01112344555555666
Q ss_pred cCC-----------------HHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CC
Q 040279 416 NNC-----------------VQEAVKLFHMLEMN----K-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PT 472 (626)
Q Consensus 416 ~g~-----------------~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~ 472 (626)
.|+ +++|...+++.... + .+.....+..+...+...|++++|...+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666666544321 1 1122346777788888888888888888887663110 12
Q ss_pred ----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 473 ----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC--A---PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 473 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
..++..+..+|...|++++|.+.+++..+... . ....++..+...+...|++++|..+++++++ +.+
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~ 334 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA----IAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHH
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHH
Confidence 23678888899999999999999988876310 0 1145778888899999999999999999876 322
Q ss_pred -------CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 544 -------DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 544 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
...++..++.+|...|++++|.+.++++.+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 134788899999999999999999999864
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4.2e-13 Score=133.69 Aligned_cols=279 Identities=15% Similarity=0.065 Sum_probs=172.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHH
Q 040279 41 LNEFLHENCKSGIINLNEARYFFGYMTHMQPSPP---ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNIL 116 (626)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l 116 (626)
+......+...| ++++|...|++++...+... ..+|..++..+...|++++|+..++++..... ..+.. ..
T Consensus 12 l~~~g~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~ 86 (406)
T 3sf4_A 12 LALEGERLCKSG--DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL---GE 86 (406)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HH
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH---HH
Confidence 334445555555 99999999999998866521 35788899999999999999999998764310 11111 11
Q ss_pred HHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCC--------------------hHHH
Q 040279 117 INCFGNKERGLCVENRIKEATWLFKNMIAFGVR-PD----VITYGTLINGFCRTGN--------------------LSVA 171 (626)
Q Consensus 117 l~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A 171 (626)
..++..++..+...|++++|+..+++....... ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 222334567889999999999999988764100 11 3478888999999999 8888
Q ss_pred HHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC-CC----cchHHHHHHHHHhcCCHHH
Q 040279 172 LRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN-PA----VVVCTTLIHGFCCAGNWEE 246 (626)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 246 (626)
+..+++........+ ..+....++..+...+...|++++|.+.+++..+.... ++ ..++..+...|...|++++
T Consensus 167 ~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 167 VDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 888887754310000 01223446677777777888888888877776543100 01 1256666677777777777
Q ss_pred HHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HhhHHHHHHHHHhcCChHH
Q 040279 247 VNGLFIEMLDLGPR-PN----LLTFNVMIDCLCKGGKINEANGLLELMIQRGLN-PD----RFTYNSLMDGYCLVGRIDT 316 (626)
Q Consensus 247 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~ 316 (626)
|...+++..+.... .+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777666542110 01 334555566666666666666666655442100 01 2234444455555555555
Q ss_pred HHHHHHHHH
Q 040279 317 AREIFLSMH 325 (626)
Q Consensus 317 a~~~~~~~~ 325 (626)
|...+++..
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2.9e-13 Score=135.12 Aligned_cols=241 Identities=13% Similarity=0.063 Sum_probs=154.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHH
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPI----SSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNILIN 118 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~ 118 (626)
....+...| ++++|+..|++++...+. +. .+|..++..+...|++++|+..++++++... ..+. .....
T Consensus 54 ~g~~~~~~g--~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~ 127 (411)
T 4a1s_A 54 EGERLCNAG--DCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR---LGEAK 127 (411)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHH
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc---hHHHH
Confidence 334445555 999999999999998665 43 5788999999999999999999998875310 1111 11222
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFG-----VRPDVITYGTLINGFCRTGN-----------------LSVALRLHK 176 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 176 (626)
++..++..+...|++++|...+++..... .+....++..+...+...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 33345678899999999999999987641 11234578888999999999 888888888
Q ss_pred HHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC-CC----cchHHHHHHHHHhcCCHHHHHHHH
Q 040279 177 KMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN-PA----VVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
+........+ ..+....++..+...+...|++++|++.+++..+.... .+ ..++..+...|...|++++|...+
T Consensus 208 ~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 7654210000 01223346667777777778888887777776543100 01 125566666666677777777666
Q ss_pred HHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 252 IEMLDLGPR-----PNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 252 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
++..+.... ....++..+...+...|++++|...+++..+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 665542110 0123445555555566666666665555443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=4.1e-13 Score=133.78 Aligned_cols=281 Identities=13% Similarity=0.059 Sum_probs=160.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-CC
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD----RFTYNSLMDGYCLVGRIDTAREIFLSMHSK----GCK-HT 332 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~ 332 (626)
....+......+...|++++|...++++.+.+.. + ...+..+...+...|++++|...+++.... +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3334455555666666666666666666655211 2 134445555566666666666666554332 100 01
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVR-QTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
..++..+...+...|++++|+..+++..+.... ++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 233444444555555555555555544432000 000 001224444445
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHH----CC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 412 GLCKNNC--------------------VQEAVKLFHMLEM----NK-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 412 ~~~~~g~--------------------~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
.+...|+ +++|...++.... .+ .+....++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 5666655554332 11 111234566777778888888888888877765
Q ss_pred CCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 467 KGL-VPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-APN----VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 467 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
... .++ ..++..++.+|...|++++|...+++..+... .++ ..++..+...|...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 112 23677788888888888888888888765310 011 45677788888889999999998888876
Q ss_pred CCCCC--CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 537 PERNL--VP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 537 ~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
..... .+ ...++..++.+|...|++++|.+.++++...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 10000 11 1456778888888999999999999887643
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1.1e-11 Score=118.13 Aligned_cols=247 Identities=9% Similarity=0.009 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------HcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 350 EEAMSLYRQIISNGVRQTVITYNTLLSGLF-------QAGQA-------GYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
++|+..|++++.. .+.+...|..++..+. ..|+. ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6777888888775 2446667777776665 34775 8899999998873123456678888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHH-hcCCHHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIE-IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLC-RKGKLEKAN 493 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~ 493 (626)
.|++++|..+|+++.+.. +.+.. +|..++..+.+.|++++|..+|+++.+.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988753 22344 78888999999999999999999998853 234555554444332 369999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-CCCC--CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 494 DFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER-NLVP--DDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
++|++..+.. +.+...|..++..+.+.|++++|..+|++++. . .+.| ....|..++..+.+.|+.++|..++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT--SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998863 44678889999999999999999999999998 3 2455 356788889999999999999999999
Q ss_pred HHhhccccccccCCchhhh-hhhheeccCCccchhccccCCCCCCch
Q 040279 571 SYRACLYVTIFQPSSLGSM-IGCTVRLMPQPEMSDTLGDDGDGNAGP 616 (626)
Q Consensus 571 ~~~~~~~~~~~~p~~~~~l-~~~~~~~~~~~~~~~~~~~~~p~~~~~ 616 (626)
+.. ..|+..... .+.+ .--.+++++.|+++..
T Consensus 267 a~~-------~~p~~~~~~~~~~~-------~~r~~~l~~~P~~~~~ 299 (308)
T 2ond_A 267 RFT-------AFREEYEGKETALL-------VDRYKFMDLYPCSASE 299 (308)
T ss_dssp HHH-------HTTTTTSSCHHHHH-------HTTTCBTTBCSSCHHH
T ss_pred HHH-------HcccccccchHHHH-------HHHHHhcccCCCCHHH
Confidence 863 344432111 1111 0113777899988643
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=1e-12 Score=114.77 Aligned_cols=164 Identities=13% Similarity=0.035 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
+...|..+...|...|++++|+..|++..+.. |.+...+..+..+|...|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45567777777777777888877777777654 4566777777777888888888888877776642 234666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCC
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEK 560 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 560 (626)
.+...++++.|.+.+.+..+.. +.+...+..+..++.+.|++++|++.|+++++ +.| +..++..++.+|.+.|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----IKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----hcchhhhHHHHHHHHHHHCCC
Confidence 7778888888888888877753 44566777777888888888888888888877 566 46777788888888888
Q ss_pred HhHHHHHHHHHH
Q 040279 561 YHECSAVSKSSY 572 (626)
Q Consensus 561 ~~~A~~~~~~~~ 572 (626)
+++|.+.|+++.
T Consensus 157 ~~~A~~~~~~al 168 (184)
T 3vtx_A 157 RDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888875
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.9e-12 Score=127.76 Aligned_cols=230 Identities=10% Similarity=0.032 Sum_probs=169.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC--CCCHHHHH
Q 040279 339 LINGYCKILNVEEAMSLYRQIISN----GVRQ-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLY----NV--EPDLSTYN 407 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~ 407 (626)
....+...|++++|+..+++..+. +..+ ...++..+...|...|+++.|...+.+..+. +. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666788888888888887753 1111 2356777788888888888888888887542 10 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CC-CCCHhHHH
Q 040279 408 ILIDGLCKNNCVQEAVKLFHMLEMN----KF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK----GL-VPTVVTYS 477 (626)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 477 (626)
.+...|...|++++|...+++..+. +. +....++..+..+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888889999999999999876632 11 111247888999999999999999999988762 22 33366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKN----GCAPNVVTFNTLMHGFLQNNK---TSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
.++.+|...|++++|.+.+++..+. +-+.....+..+...+...|+ .++|+.++++... .| ....+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-----~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-----YADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-----HHHHHHHHH
Confidence 9999999999999999999988763 111122345667778888998 7888888887743 34 356788
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++.+|...|++++|.+.++++..
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=5.5e-13 Score=128.94 Aligned_cols=151 Identities=11% Similarity=0.013 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCC----HhHHHHHHHHHHhcCC
Q 040279 419 VQEAVKLFHMLEMN----K-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPT----VVTYSIMIHGLCRKGK 488 (626)
Q Consensus 419 ~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~ 488 (626)
+++|...+++.... + .+.....+..+...+...|++++|...+++..+... .++ ..++..++..+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 66666666544321 1 112234677777888888888888888888765210 011 3367888889999999
Q ss_pred HHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---C----HHHHHHHHHHHH
Q 040279 489 LEKANDFLLYMEKNGC-APN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP---D----DTTFSIVVDLLA 556 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p---~----~~~~~~l~~~~~ 556 (626)
+++|.+.+++..+... ..+ ..++..+...+...|++++|...++++.+ +.| + ..++..++.++.
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----IAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999999998875310 111 45777888899999999999999999876 222 1 346788999999
Q ss_pred ccCCHhHHHHHHHHHHh
Q 040279 557 KDEKYHECSAVSKSSYR 573 (626)
Q Consensus 557 ~~g~~~~A~~~~~~~~~ 573 (626)
+.|++++|.+.++++.+
T Consensus 315 ~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHH
Confidence 99999999999999863
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=4.1e-12 Score=110.81 Aligned_cols=171 Identities=10% Similarity=0.013 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...|..+...|...|++++|.+.|++..+.. +-+...+..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45566667777777777777777777766543 3355666677777777777777777777666544 445666666677
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (626)
.+...++++.|...+++..... +.+...+..+..++...|++++|++.|++..+.+ +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777776642 2356677777778888888888888888877753 4456677778888888888888
Q ss_pred HHHHHHHhhcCCCCCCCCH
Q 040279 527 VVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p~~ 545 (626)
|++.|+++++ +.|+.
T Consensus 160 A~~~~~~al~----~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE----KEEKK 174 (184)
T ss_dssp HHHHHHHHHH----TTHHH
T ss_pred HHHHHHHHHh----CCccC
Confidence 8888888877 56654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.1e-12 Score=126.90 Aligned_cols=241 Identities=13% Similarity=0.047 Sum_probs=145.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhHhcCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 040279 45 LHENCKSGIINLNEARYFFGYMTHMQPSPP---ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG 121 (626)
Q Consensus 45 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 121 (626)
...+...| ++++|+..|++++...+... ..++..++..+...|++++|+..++++.+.. +..........++.
T Consensus 12 g~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 12 GERLCKSG--DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--RTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHhc--cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hcccccHHHHHHHH
Confidence 33444544 99999999999998765521 4678899999999999999999999876431 11111111222333
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGV-RPD----VITYGTLINGFCRTGN--------------------LSVALRLHK 176 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 176 (626)
.++..+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 456788999999999999999766421 112 3377888899999999 888888888
Q ss_pred HHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC-----CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 040279 177 KMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI-----NPAVVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
+........+ ..+....++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...+
T Consensus 168 ~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 168 ENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7654210000 0122234566666677777777777777766554210 001124555555566666666666666
Q ss_pred HHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 252 IEMLDLGPR-PN----LLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 252 ~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555432100 00 2234444445555555555555554443
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=7.1e-12 Score=123.62 Aligned_cols=168 Identities=11% Similarity=-0.055 Sum_probs=109.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC------CCCcchH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI------NPAVVVC 231 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~ 231 (626)
.+..+...|++++|+..++++.......+. .+....++..+...|...|++++|.+.+++..+... +....++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 667778899999999999999875210000 112456788888889999999999988888765310 1113466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHhhH
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPR-PN----LLTFNVMIDCLCKGGKINEANGLLELMIQR----GL-NPDRFTY 301 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 301 (626)
+.+...|...|++++|++.|++.++.... ++ ..++..+...|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 77777788888888888888777643111 01 125666777777777777777777766652 22 2234455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 302 NSLMDGYCLVGRIDTAREIFLSMHS 326 (626)
Q Consensus 302 ~~ll~~~~~~g~~~~a~~~~~~~~~ 326 (626)
..+...+...|++++|...+++..+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666777766666666544
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2.8e-12 Score=129.73 Aligned_cols=195 Identities=12% Similarity=-0.075 Sum_probs=104.0
Q ss_pred ChhhHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQA-GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
+...+..+...+...|++ ++|...|++..+.. +.+...+..+..+|...|++++|...|+...+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 334444444444444555 55555554444432 2234444455555555555555555555554432 2344445555
Q ss_pred HHHHHc---------CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC---
Q 040279 446 DGLCKA---------GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK--------GKLEKANDFLLYMEKNGCA--- 505 (626)
Q Consensus 446 ~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--- 505 (626)
.++... |++++|+..|+++.+.. +.+...|..+..+|... |++++|++.|++..+.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 555555 55566666666555532 22355555666666555 66666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 506 PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
.+...|..+..+|...|++++|.+.|+++.+ +.| +...+..+..++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAA----LDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2555666666666666666666666666665 445 344566666666666666666654433
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=1.1e-10 Score=110.92 Aligned_cols=218 Identities=9% Similarity=0.013 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh-------cCCc-------chHHHHHHHHhhCCCCCCcchHHHH
Q 040279 169 SVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK-------EGLV-------DKAKELFLEMKGRGINPAVVVCTTL 234 (626)
Q Consensus 169 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l 234 (626)
++|...|++++... |.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..+
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 68899999998865 6778888888887763 5776 7888888888873113345578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcC
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNLL-TFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYC-LVG 312 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g 312 (626)
+..+...|++++|.++|++.++..+. +.. .|..++..+.+.|++++|..+|++..+.+. .+...|........ ..|
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcC
Confidence 88888888888888888888875322 233 677777777788888888888888877532 23333332222211 246
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHHcCCHHHHHH
Q 040279 313 RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNG-VRQ--TVITYNTLLSGLFQAGQAGYAQK 389 (626)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~ 389 (626)
+++.|..+|+...+... .+...|..++..+.+.|++++|..+|++..... .+| ....|..++......|+.+.|..
T Consensus 184 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777766665432 245556666666666666666666666666642 222 23455555555556666666666
Q ss_pred HHHHHHh
Q 040279 390 LFDEMKL 396 (626)
Q Consensus 390 ~~~~~~~ 396 (626)
+++++.+
T Consensus 263 ~~~~a~~ 269 (308)
T 2ond_A 263 VEKRRFT 269 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=2.5e-12 Score=130.13 Aligned_cols=213 Identities=10% Similarity=-0.016 Sum_probs=178.0
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHY-DAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+++++..++......+ .+...+..++..+...|++ ++|+..|+++++. .|+....... ++..|...|+++
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~------lg~~~~~~g~~~ 154 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQ------LGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHH------HHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHH------HHHHHHHcCCHH
Confidence 5667777877666544 4888999999999999999 9999999999976 5654332222 357889999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRT---------GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
+|+..|++.++. .|+...+..+..++... |++++|++.|+++++.+ +.+...|..+..+|..
T Consensus 155 ~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 155 SAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLDGRSWYILGNAYLS 225 (474)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 999999999987 56778899999999999 99999999999999876 6778899999999999
Q ss_pred c--------CCcchHHHHHHHHhhCCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 206 E--------GLVDKAKELFLEMKGRGIN---PAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 206 ~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
. |++++|++.|++..+.. + .+...|..+..+|...|++++|++.|++..+..+. +...+..+...+.
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~ 303 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLE 303 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 8 99999999999998863 2 37788999999999999999999999999886543 5667888888888
Q ss_pred hcCCHHHHHHHHHH
Q 040279 275 KGGKINEANGLLEL 288 (626)
Q Consensus 275 ~~~~~~~a~~~~~~ 288 (626)
..|++++|...+..
T Consensus 304 ~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 304 FLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888775544
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2e-12 Score=123.46 Aligned_cols=235 Identities=13% Similarity=0.044 Sum_probs=125.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-C
Q 040279 335 SYNILINGYCKILNVEEAMSLYRQIISN-------GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLY------NV-E 400 (626)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 400 (626)
++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...+++..+. +. +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444555555555555444431 11122334444555555555555555555554432 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC------
Q 040279 401 PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN-------KFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK------ 467 (626)
Q Consensus 401 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 467 (626)
.....+..+...+...|++++|...+++..+. ..+.....+..+...+...|++++|..+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 12335555666666666666666666655432 11223445666777777777777777777776552
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 468 GLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-------GCAPNV-------VTFNTLMHGFLQNNKTSKVVELLH 532 (626)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 532 (626)
+..| ...++..++.+|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 1122 2446677777888888888888888877652 111111 122222333444556666677777
Q ss_pred HhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 533 KMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 533 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.... ..| ...++..++.+|.+.|++++|.++++++.+
T Consensus 269 ~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKV----DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCC----CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7765 445 456788999999999999999999999863
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=9.9e-11 Score=114.99 Aligned_cols=269 Identities=11% Similarity=0.016 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhh
Q 040279 54 INLNEARYFFGYMTHMQPSPPIS----SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCV 129 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~ 129 (626)
|++++|...+++.+...+..+.. +++.+...+...|++++|...+++..... |+.........+...++..+..
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 59999999999998876544432 56777888899999999999999887531 1111111122222345677889
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 130 ENRIKEATWLFKNMIAF----GVR--P-DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+++........+ .+....++..+...
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--PQQQLQCLAMLIQC 183 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--GGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC--cHHHHHHHHHHHHH
Confidence 99999999999988764 211 2 234567788899999999999999999886542111 11234567778888
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCc-chHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAV-VVCT-----TLIHGFCCAGNWEEVNGLFIEMLDLGPRPN---LLTFNVMIDCL 273 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 273 (626)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 88899999999999887653111111 1222 223346688888888888887765432211 12345566777
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 274 CKGGKINEANGLLELMIQR----GLNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHS 326 (626)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 326 (626)
...|++++|...++..... |..++. ..+..+...+...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888777777766543 111111 1334445555666666666666665544
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=7.1e-11 Score=116.14 Aligned_cols=229 Identities=10% Similarity=-0.006 Sum_probs=165.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CC-CHHHHH
Q 040279 339 LINGYCKILNVEEAMSLYRQIISNGVR-QT----VITYNTLLSGLFQAGQAGYAQKLFDEMKLY----NV-EP-DLSTYN 407 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 407 (626)
....+...|++++|+..++++.+.... ++ ..++..+...|...|+++.|...+.+..+. +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344556778888888888887653110 12 345677777888888888888888877542 11 11 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCCCCCHhHHH
Q 040279 408 ILIDGLCKNNCVQEAVKLFHMLEMN----KFE-FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ-----KGLVPTVVTYS 477 (626)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 477 (626)
.+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888999999999988776542 111 1235677888999999999999999998876 32 22367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGC---APN-VVTFNTLMHGFLQNNK---TSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
.++.++.+.|++++|.+.+++..+... .+. ...+..+...+...++ ..+|+.++++... .| ....+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-----~~~~~~~~~ 340 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-----HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-----hhHHHHHHH
Confidence 899999999999999999999887421 122 3345556666777888 7888888887432 33 345677
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++..|...|++++|.+.++++..
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=123.76 Aligned_cols=243 Identities=12% Similarity=-0.004 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CC-
Q 040279 264 LTFNVMIDCLCKGGKINEANGLLELMIQR-------GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK------GC- 329 (626)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~- 329 (626)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45555666666666666666666666552 11222344455555555666666666665555432 10
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 040279 330 KHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEP-DLSTYNI 408 (626)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 408 (626)
+.....+..+...+...|++++|+..++++.+... ... .+..| ....+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~-~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVL-GKDHPDVAKQLNN 158 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHH-CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------Hhc-CCCChHHHHHHHH
Confidence 11233344444555555555555555555443200 000 01111 1223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-------CCCCC--
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMN------K-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK-------GLVPT-- 472 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-- 472 (626)
+...+...|++++|..+++.+... + .+....++..+..++...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 445555555555555555544332 0 1222334555555566666666666666555431 00111
Q ss_pred -----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 473 -----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 473 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
...+..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|.++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111222223334445555555565555432 23345677777777778888888888777765
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=2.8e-11 Score=127.24 Aligned_cols=165 Identities=13% Similarity=0.063 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
+...++.+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|+++++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777778888888888888887777654 4567777888888888888888888888877742 224677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCC
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEK 560 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 560 (626)
+|...|++++|++.|++.++.+ +-+...|..+..+|...|++++|++.|+++++ +.|+ ...+..++.++...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~----l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK----LKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHhhhhhHHHhccc
Confidence 8888888888888888887753 34567788888888888888888888888887 6774 6778888888888888
Q ss_pred HhHHHHHHHHHHh
Q 040279 561 YHECSAVSKSSYR 573 (626)
Q Consensus 561 ~~~A~~~~~~~~~ 573 (626)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=5.9e-11 Score=103.40 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHH
Q 040279 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGL 483 (626)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 483 (626)
..+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 355666777778888888888888776543 4567778888888888888888888888887752 33577888888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHh
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 562 (626)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+ ..| +...+..++.++...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALG----LRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999988763 55677888888899999999999999999887 445 5678888999999999999
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|.+.++++.
T Consensus 162 ~A~~~~~~~~ 171 (186)
T 3as5_A 162 EALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.9e-10 Score=113.15 Aligned_cols=228 Identities=8% Similarity=-0.050 Sum_probs=155.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----C-CChhhHHH
Q 040279 305 MDGYCLVGRIDTAREIFLSMHSKGCK-H----TVVSYNILINGYCKILNVEEAMSLYRQIISNGV-----R-QTVITYNT 373 (626)
Q Consensus 305 l~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~-~~~~~~~~ 373 (626)
...+...|++++|...|++..+.... + ...++..+...|...|+++.|+..+++..+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34556778888888888777653110 1 234566777778888888888888877764311 1 11345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHH
Q 040279 374 LLSGLFQAGQAGYAQKLFDEMKLY----NVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEM-----NKFEFGIEIFNC 443 (626)
Q Consensus 374 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 443 (626)
+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++... .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 778888888888888888877542 1111 124667778888888999999988887765 33 334677888
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC----CCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQK----GLVPTVVTYSIMIHGLCRKGK---LEKANDFLLYMEKNGCAPN-VVTFNTLM 515 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 515 (626)
+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +.+|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 888899999999999998887662 111113345566666777777 66777766652 22222 34566788
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 040279 516 HGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999988875
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=8.7e-10 Score=108.18 Aligned_cols=200 Identities=10% Similarity=-0.041 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISN----GVR--Q-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVE----PDLST 405 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 405 (626)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34445555566666666666555432 111 1 1233444555666666666666666665432111 11234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C-HHHHH----HHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHH
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEF-G-IEIFN----CLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTY 476 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 476 (626)
+..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 5566666777777777777777655321111 1 11111 223346677888888888887766322111 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 477 SIMIHGLCRKGKLEKANDFLLYMEKN----GCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+...+...|++++|.+.+++..+. +..++. ..+..+..++...|+.++|...++++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66677778888888888888777542 211122 2555566677788888888888887765
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=1.5e-10 Score=104.88 Aligned_cols=191 Identities=10% Similarity=-0.004 Sum_probs=110.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
++..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..++...+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666666667777777777777776664322555555556666667777777777776666554 335556666666
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTV-------VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTFNTLMH 516 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 516 (626)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 6777777777777777666532 1123 34556666666666777777777666664 333 345555555
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+|...| ..+++++.. +.+ +...+.... ....|.+++|...++++.
T Consensus 162 ~~~~~~-----~~~~~~a~~----~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATP----LASSNKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHH-----HHHHHHHGG----GTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHh----cccCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 554333 333444444 211 223332222 233455677777777765
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=2e-10 Score=103.89 Aligned_cols=207 Identities=13% Similarity=-0.030 Sum_probs=161.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040279 331 HTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILI 410 (626)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 410 (626)
.++..+......+...|++++|+..|++..+...+++...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999987554677788889999999999999999999999864 33566888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGI-------EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMI 480 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 480 (626)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999988764 3445 55888888999999999999999999985 454 56778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHH
Q 040279 481 HGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVD 553 (626)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~ 553 (626)
.+|...| ...++++...+ ..+...+.... ....+.+++|+..++++.+ +.|+ ..+...+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~----l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT----LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHH
Confidence 8886554 34455555543 33444444333 3445778999999999998 7785 444444443
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.3e-10 Score=101.08 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (626)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455556666677777776666665432 3345566666667777777777777777666543 445666677777777
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 450 KAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
..|++++|.+.++++.+.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776642 3356667777777777777777777777777653 4456677777777777788888887
Q ss_pred HHHHhhc
Q 040279 530 LLHKMAE 536 (626)
Q Consensus 530 ~~~~~~~ 536 (626)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1.4e-10 Score=122.05 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=143.6
Q ss_pred CCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 35 SSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
|.....++.+...+.+.| ++++|+..|+++++..|. +..+|+.++.++.+.|++++|+..|+++++. .|+....-
T Consensus 6 P~~a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~ 80 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQG--NIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAY 80 (723)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 444566777777777776 999999999999998776 7899999999999999999999999999976 56643322
Q ss_pred HHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHH
Q 040279 115 ILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 115 ~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
. .++..+...|++++|++.|++.++.. +-+..++..+..++.+.|++++|++.|+++++.+ +.+..
T Consensus 81 ~------nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~ 146 (723)
T 4gyw_A 81 S------NMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPD 146 (723)
T ss_dssp H------HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHH
T ss_pred H------HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChH
Confidence 2 34678899999999999999999874 4468899999999999999999999999999876 67788
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.+..+...+...|++++|.+.++++.+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=5.1e-10 Score=105.42 Aligned_cols=191 Identities=12% Similarity=-0.024 Sum_probs=124.4
Q ss_pred HHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHH
Q 040279 378 LFQAGQAGYAQKLFDEMKLY----NVEPD-LSTYNILIDGLCKNNCVQEAVKLFHMLEMN----KFEF-GIEIFNCLIDG 447 (626)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~ 447 (626)
|...|++++|...|.+..+. +-+++ ..+|..+..+|...|++++|+..+++.... +... ...+++.+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544321 11111 235556666666666666666666554422 1000 13467778888
Q ss_pred HHHc-CCHHHHHHHHHhcccCCCCC-C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 040279 448 LCKA-GRLDNAWELFHKLPQKGLVP-T----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV------VTFNTLM 515 (626)
Q Consensus 448 ~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~ 515 (626)
|... |++++|+..|++..+..... + ..++..++..+...|++++|++.|++..+....... ..+..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8886 99999999999887631110 1 356888999999999999999999999986322221 1567788
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH------HHHHHHHHHH--ccCCHhHHHHHHHHHH
Q 040279 516 HGFLQNNKTSKVVELLHKMAEPERNLVPDDT------TFSIVVDLLA--KDEKYHECSAVSKSSY 572 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~ 572 (626)
.++...|++++|...+++.++ +.|+.. .+..++.++. ..+++++|++.|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS----EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC----C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHh----hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 889999999999999999988 666422 3445566664 4678888888887763
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.4e-10 Score=107.09 Aligned_cols=235 Identities=12% Similarity=0.024 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHhHh-------cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHhhHHHHHHhhhhh
Q 040279 54 INLNEARYFFGYMTH-------MQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL---LPDFLTLNILINCFGNK 123 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~~~~~~ll~~~~~l 123 (626)
|++++|+..|+++++ .+++....++..++..+...|++++|+..++++++... .++.. ....++..+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l 91 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP---AVAATLNNL 91 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch---HHHHHHHHH
Confidence 466666666666654 22233567899999999999999999999999885410 01111 112223345
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHC------C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccccHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAF------G-VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYE-NGLISKTNIFS 195 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (626)
+..+...|++++|+..|+++... . .+....++..+...+...|++++|+..++++...... .+...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 67899999999999999998765 1 1223567888999999999999999999998875000 00001345678
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhC-------CCCC-CcchHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCC
Q 040279 196 YSIIIDSLCKEGLVDKAKELFLEMKGR-------GINP-AVVVCTTLIHGFCCAGN------WEEVNGLFIEMLDLGPRP 261 (626)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~~ 261 (626)
+..+...+...|++++|.+.+++..+. ...+ ....|..+...+...+. +..+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 889999999999999999999998763 1122 23344444444443333 22232223222111 122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
...++..+...|...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988764
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=4.4e-08 Score=98.78 Aligned_cols=375 Identities=8% Similarity=-0.046 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC-cch
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL-VDK 211 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 211 (626)
++.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+.
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC----C
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCchHHH
Confidence 66666666666653 222 6677777777777763 2467777777766666553 355
Q ss_pred HHHHHHHHhhC-CC-CCCcchHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHH
Q 040279 212 AKELFLEMKGR-GI-NPAVVVCTTLIHGFC----CAGNWEEVNGLFIEMLDLGPRPNL-LTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 212 A~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 284 (626)
...+|+..... |. +.+...|...+..+. .+++.+.+..+|++.+... ..+. ..|...... .+......+..
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH-HHHhccccHHH
Confidence 66667666543 32 224456666665433 2355677777777777631 1111 122222111 11111222222
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--C-----hHHHHHHHH
Q 040279 285 LLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL--N-----VEEAMSLYR 357 (626)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~ 357 (626)
++.+.. +.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+
T Consensus 145 ~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 222211 111222222222221100012223433333322110 0 234555666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 040279 358 QIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN----- 432 (626)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 432 (626)
+++.. .+.+...|...+..+...|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.
T Consensus 204 ~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~ 273 (493)
T 2uy1_A 204 YILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGE 273 (493)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC---
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhc
Confidence 66654 2334556666666666667777777777776655 22222211 12111111111 1111110
Q ss_pred -------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCC
Q 040279 433 -------KFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR-KGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 433 -------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 504 (626)
.......+|...+....+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...+..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 00112356777777777788999999999999 32 12344555433333223 346999999999998862
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
+.+...+...+......|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.++++++...
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33455666677777788999999999999843 4677888887777889999999999998753
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=1.2e-09 Score=102.92 Aligned_cols=219 Identities=8% Similarity=-0.062 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|...|+++ +..+...|++++|+..|++..... +..........++..++..|...|+++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQ--KKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 367777777665 456778999999999999887531 111111122233445677888999999
Q ss_pred HHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 135 EATWLFKNMIAFGVR-PD----VITYGTLINGFCRT-GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
+|+..|++.+..... .+ ..++..+..+|... |++++|+..|++.+......+. ......++..+...+.+.|+
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCC
Confidence 999999988764210 01 35788899999996 9999999999998874310000 00113567788889999999
Q ss_pred cchHHHHHHHHhhCCCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-Ch---hhHHHHHHHHH--hc
Q 040279 209 VDKAKELFLEMKGRGINPAVV------VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP-NL---LTFNVMIDCLC--KG 276 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~l~~~~~--~~ 276 (626)
+++|++.|++..+........ .|..+..++...|++++|...|++.++..+.. +. ..+..++..+. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999988764222211 45677778888899999999888887643211 11 12333444443 34
Q ss_pred CCHHHHHHHHHHHHh
Q 040279 277 GKINEANGLLELMIQ 291 (626)
Q Consensus 277 ~~~~~a~~~~~~~~~ 291 (626)
+++++|+..|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 556666666655543
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3.4e-10 Score=106.07 Aligned_cols=164 Identities=16% Similarity=0.059 Sum_probs=114.8
Q ss_pred hcCCHHHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CccccccHHHHHHHH
Q 040279 129 VENRIKEATWLFKNMIAF-------GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYEN-GLISKTNIFSYSIII 200 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 200 (626)
..|++++|+..|++.++. ..+....++..+...+...|++++|+..++++....... +...+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555565555555442 212345678889999999999999999999987541000 000245567888899
Q ss_pred HHHHhcCCcchHHHHHHHHhhC------C-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-ChhhH
Q 040279 201 DSLCKEGLVDKAKELFLEMKGR------G-INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL------GPRP-NLLTF 266 (626)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 266 (626)
..+...|++++|.+.+++.... . .+....++..+...|...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 1223567778888888889999998888888764 1122 24467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 267 NVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
..+...+...|++++|...++++.+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77778888888888888888877653
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=1.1e-08 Score=93.99 Aligned_cols=185 Identities=11% Similarity=0.063 Sum_probs=116.5
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 352 AMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV-EPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
|+..+++....+ .++......+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666543 34455555666777777888888888877765432 1245566677777888888888888887776
Q ss_pred HCCCCc-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 431 MNKFEF-----GIEIFNCLIDG--LCKAG--RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 431 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 24455555555 33334 778888888887664 34423333333477778888888888876654
Q ss_pred C-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 502 N-----G----CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 502 ~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
. + -+.|..++..++......|+ +|.++++++.+ ..|+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~----~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK----LDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH----TTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH----hCCCChH
Confidence 2 0 03345566566655556666 77788888877 6676443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=6.6e-09 Score=95.52 Aligned_cols=185 Identities=8% Similarity=-0.005 Sum_probs=134.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLP 465 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (626)
+...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45666666788888899999999999998876553 2467788888999999999999999999997
Q ss_pred cCCCCC-----CHhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 466 QKGLVP-----TVVTYSIMIHG--LCRKG--KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 466 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 45 24555555555 33334 899999999998775 45544444445588899999999999987765
Q ss_pred CCC---CC---CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc
Q 040279 537 PER---NL---VP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS 585 (626)
Q Consensus 537 ~~~---~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~ 585 (626)
... .. .| +..++..++.+....|+ +|.++++++. ...|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~-------~~~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV-------KLDHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH-------HTTCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH-------HhCCCC
Confidence 000 00 25 45667677777777786 8889999886 446665
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=8.1e-08 Score=96.88 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhHHHHHHHHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG-RLDNAWELFHKLPQKGLVPTVVTYSIMIHGL 483 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 483 (626)
.|...+....+.++.+.|..+|+.. ... ..+..+|......-...+ +.+.|..+|+...+.. +.+...|...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444445455556677777777666 221 223334432222222222 5677777777666531 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
...|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66677777777777662 245556666655555677777766666655
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=1.6e-09 Score=96.13 Aligned_cols=123 Identities=13% Similarity=0.009 Sum_probs=62.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (626)
+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|++.|+++.+.+ +.+..++..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5555566666666666666655532 2235555566666666666666666666665542 3344555555555544332
Q ss_pred --HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 524 --TSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 524 --~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+.+...+++... ..|....+...+.++...|++++|...|+++.
T Consensus 138 ~~~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 138 QEKKKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2333444444433 22222333444555555566666666666654
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=3.2e-09 Score=98.18 Aligned_cols=162 Identities=8% Similarity=-0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCC-HhHHHHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPT-VVTYSIM 479 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l 479 (626)
.+..+...+.+.|++++|...|+.+.... +.+ ...+..+..+|...|++++|+..|+++.+... .|. ...+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 33334444444444444444444444332 112 33444444444445555555555554444211 001 2233444
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 480 IHGLCR--------KGKLEKANDFLLYMEKNGCAPNVVT-----------------FNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 480 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~-----------------~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
..++.. .|++++|+..|+++.+.. +.+... +..++..|...|++++|+..|+++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444 455555555555554431 111111 356788899999999999999999
Q ss_pred hcCCCCCCCC----HHHHHHHHHHHHcc----------CCHhHHHHHHHHHH
Q 040279 535 AEPERNLVPD----DTTFSIVVDLLAKD----------EKYHECSAVSKSSY 572 (626)
Q Consensus 535 ~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 572 (626)
++ ..|+ ...+..++.+|... |++++|.+.++++.
T Consensus 175 l~----~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 175 FD----AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HH----HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HH----HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 88 4554 46788888888866 99999999999986
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=2.5e-09 Score=92.07 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH-H
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG-L 483 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 483 (626)
.+......+...|++++|...+++..... |.+...+..+..++...|++++|+..++++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556677888999999999998877554 5577888999999999999999999999998753 454444333222 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHHHHHHHHHHccCC
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTFSIVVDLLAKDEK 560 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 560 (626)
...+...+|++.+++..+.. +.+...+..+..++...|++++|...++++++ ..|+ ...+..++.++...|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILK----VNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCcccChHHHHHHHHHHHHHhCC
Confidence 23233445788999998863 44678899999999999999999999999998 5664 5688899999999999
Q ss_pred HhHHHHHHHHHHh
Q 040279 561 YHECSAVSKSSYR 573 (626)
Q Consensus 561 ~~~A~~~~~~~~~ 573 (626)
.++|...|+++..
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998854
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=3.2e-09 Score=94.25 Aligned_cols=139 Identities=11% Similarity=0.014 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
..+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++.+.. +.+..+|..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 347788889999999999999888765 5678889999999999999999999999998853 33577888888888666
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040279 487 GK--LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVD 553 (626)
Q Consensus 487 g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 553 (626)
|+ .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHH
Confidence 54 4455666665542 233333455566677788999999999999998 8898765554443
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=4.9e-09 Score=85.46 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556667777777777777777776542 2356667777777777778888888887777653 445667777777777
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|++++|.+.++++.+ ..| +...+..++.++.+.|++++|.+.++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 88888888888888776 344 46667777778888888888888887775
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=2e-09 Score=113.92 Aligned_cols=173 Identities=9% Similarity=-0.022 Sum_probs=134.2
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 379 FQAGQAGYAQKLFDEMK--------LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888887 332 3455677778888888899999999888887654 4567788888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
.|++++|++.|+++.+.. +.+...|..+..++.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888753 2257778888888999999999 89999888864 44667888888899999999999999
Q ss_pred HHHhhcCCCCCCCC-HHHHHHHHHHHHccCC
Q 040279 531 LHKMAEPERNLVPD-DTTFSIVVDLLAKDEK 560 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 560 (626)
|+++++ +.|+ ...+..++.++...|+
T Consensus 557 ~~~al~----l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP----TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT----TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc----cCcccHHHHHHHHHHHHccCC
Confidence 999887 7786 4667777777766554
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=5.1e-09 Score=98.13 Aligned_cols=166 Identities=12% Similarity=0.007 Sum_probs=138.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHH-H
Q 040279 400 EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYS-I 478 (626)
Q Consensus 400 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ 478 (626)
+.+...+..+...+...|++++|...|+++.... |.+...+..+...+...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455667777888889999999999999988765 557888999999999999999999999999875 35544333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHHHHHHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTFSIVVDLL 555 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~l~~~~ 555 (626)
....+...++.++|.+.+++..+.. +.+...+..+...+...|++++|...+.++++ ..|+ ...+..++.++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~----~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLR----XDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cccccccchHHHHHHHHH
Confidence 3334677788889999999998874 55778999999999999999999999999998 6664 56789999999
Q ss_pred HccCCHhHHHHHHHHHHh
Q 040279 556 AKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~ 573 (626)
...|+.++|...+++.+.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999998754
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=3.2e-09 Score=98.17 Aligned_cols=204 Identities=10% Similarity=0.028 Sum_probs=116.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT---VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV-EPD-LSTY 406 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~ 406 (626)
+...+......+.+.|++++|+..|+++.+... .+ ...+..+...+...|++++|...|+.+.+... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 445555556666666667777766666665421 12 34555566666666666666666666655311 111 2344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 407 NILIDGLCK--------NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 407 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
..+..++.. .|++++|...|+++.... |.+......+.......++ -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~------------------~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAK------------------LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHH------------------HHHHHHH
Confidence 455555555 666666666666655442 1122222111100000000 0111356
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCCC
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQN----------NKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
++.+|...|++++|+..|+++++.. |+ ...+..++.+|... |++++|...++++++ ..|+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~----~~p~ 227 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ----IFPD 227 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH----HCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH----HCCC
Confidence 7788889999999999999998752 33 34677777788766 888999999999988 5665
Q ss_pred H----HHHHHHHHHHHccCCH
Q 040279 545 D----TTFSIVVDLLAKDEKY 561 (626)
Q Consensus 545 ~----~~~~~l~~~~~~~g~~ 561 (626)
. .....+..++...|++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 3 2333444444444443
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=4.6e-10 Score=93.67 Aligned_cols=143 Identities=9% Similarity=-0.054 Sum_probs=96.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
..+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445567777777777665432 2334455667777778888888888888777742 235677777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhcCCCCCCC-CHHHHHHHHHHHHccCC
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL-LHKMAEPERNLVP-DDTTFSIVVDLLAKDEK 560 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 560 (626)
+|+..|++..+.+ +-+..++..+...|.+.|++++|.+. ++++++ +.| ++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~----l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK----LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH----HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhCc
Confidence 8888888877753 33566777777778777877665554 577777 667 45566666666666664
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=7.6e-09 Score=84.31 Aligned_cols=128 Identities=14% Similarity=0.184 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (626)
+..+...+...|++++|..+++.+.... +.+...+..+...+...|++++|..+++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4555666666777777777777666543 3455666667777777777777777777776642 2345667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 778888888777777653 44566777777777778888888888777766
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=8e-10 Score=92.19 Aligned_cols=146 Identities=9% Similarity=-0.047 Sum_probs=105.7
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
++..+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|+++++.+ |.+..+|..+..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------ERDPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 5567778888888888888877642 2234556678888888899999999998888876 6678888888888
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGL-FIEMLDLGPRPNLLTFNVMIDCLCKGGK 278 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 278 (626)
|.+.|++++|+..|++..+.. +-+...|..+...|.+.|++++|.+. +++.++..+. +..+|......+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888888888888887763 33567788888888888887765554 4777765433 56666666666666554
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=3.5e-09 Score=91.18 Aligned_cols=167 Identities=11% Similarity=0.022 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 38 ETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
..........+...| ++++|...|++++...|. +...+..++..+.+.|++++|+..++++.+. .|+.. +..+.
T Consensus 6 ~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~ 79 (176)
T 2r5s_A 6 DEQLLKQVSELLQQG--EHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLI 79 (176)
T ss_dssp CTTHHHHHHHHHHTT--CHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHH
Confidence 344555556666666 999999999999887666 7889999999999999999999999998765 44332 22222
Q ss_pred HhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH
Q 040279 118 NCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS 197 (626)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (626)
..+ .+...+....|+..+++.++.. +.+...+..+..++...|++++|+..|+++++.+. ...+...+.
T Consensus 80 ~~~-----~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~ 148 (176)
T 2r5s_A 80 AKL-----ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKK 148 (176)
T ss_dssp HHH-----HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHH
T ss_pred HHH-----HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHH
Confidence 111 1122233445789999988874 44688899999999999999999999999998761 012356888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhh
Q 040279 198 IIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.+...+...|+.++|...|++...
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999987654
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=6.4e-09 Score=97.43 Aligned_cols=160 Identities=11% Similarity=-0.016 Sum_probs=99.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
....+...| ++++|...|++++...|. +..++..++..+.+.|++++|+..++++... .|+........
T Consensus 123 ~a~~~~~~g--~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~------ 191 (287)
T 3qou_A 123 QAMQLMQES--NYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA------ 191 (287)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH------
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH------
Confidence 333444444 777777777777776555 5666777777777777777777777776654 44443222221
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
...+...++.++|+..+++..... +.+...+..+..++...|++++|+..|+++++.+. ...+...+..++..+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p-----~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDL-----TAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TGGGGHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----ccccchHHHHHHHHH
Confidence 123445566666777777766653 34566677777777777777777777777776541 011255666777777
Q ss_pred HhcCCcchHHHHHHHHh
Q 040279 204 CKEGLVDKAKELFLEMK 220 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~ 220 (626)
...|+.++|...|++..
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 77777777776666543
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=3.8e-08 Score=87.46 Aligned_cols=160 Identities=12% Similarity=0.011 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC----CHHHHHHHHHhcccCCCCCCHhHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG----RLDNAWELFHKLPQKGLVPTVVTYS 477 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~ 477 (626)
+...+..+...|...+++++|...|+...+.+ +...+..+...|.. + ++++|.++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444555555555555444433 33444444444444 3 4555555555554432 344445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040279 478 IMIHGLCR----KGKLEKANDFLLYMEKNGCA-PNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTF 548 (626)
Q Consensus 478 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 548 (626)
.|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|..+|+++.+ ..++...+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~a~ 165 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS----LSRTGYAE 165 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----TSCTTHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCCHHHH
Confidence 55555544 45555555555555554310 014455555555555 5555666666666555 22234445
Q ss_pred HHHHHHHHcc-C-----CHhHHHHHHHHHH
Q 040279 549 SIVVDLLAKD-E-----KYHECSAVSKSSY 572 (626)
Q Consensus 549 ~~l~~~~~~~-g-----~~~~A~~~~~~~~ 572 (626)
..++.+|... | ++++|.++++++.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 5555555432 2 5666666666553
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=3e-09 Score=112.53 Aligned_cols=161 Identities=6% Similarity=-0.118 Sum_probs=139.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh
Q 040279 414 CKNNCVQEAVKLFHMLE--------MNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485 (626)
Q Consensus 414 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (626)
...|++++|+..+++.. ... +.+...+..+..++...|++++|+..|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 443 5567888999999999999999999999998853 3367899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHH
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHEC 564 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 564 (626)
.|++++|++.|+++.+.+ +.+...+..+..++.+.|++++ ++.|+++++ +.| +...+..++.++.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS----TNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH----hCCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999864 4467889999999999999999 999999998 778 578899999999999999999
Q ss_pred HHHHHHHHhhccccccccCCchhhh
Q 040279 565 SAVSKSSYRACLYVTIFQPSSLGSM 589 (626)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~p~~~~~l 589 (626)
.+.|+++. ...|+...+.
T Consensus 554 ~~~~~~al-------~l~P~~~~a~ 571 (681)
T 2pzi_A 554 VRTLDEVP-------PTSRHFTTAR 571 (681)
T ss_dssp HHHHHTSC-------TTSTTHHHHH
T ss_pred HHHHHhhc-------ccCcccHHHH
Confidence 99999985 4567764433
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=1.4e-08 Score=105.64 Aligned_cols=149 Identities=7% Similarity=-0.043 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFL 496 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (626)
|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666777776665443 3456666777777777777777777777776642 224666777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHcc---CCHhHHHHHHHHHH
Q 040279 497 LYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKD---EKYHECSAVSKSSY 572 (626)
Q Consensus 497 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 572 (626)
++..+.. +.+...+..+..++...|++++|.+.++++.+ +.| +...+..++.++... |++++|.+.++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ----LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 7777653 34456677777777777777777777777776 455 356667777777777 77777777777765
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=3.4e-08 Score=88.80 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=116.6
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPP--ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNIL 116 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 116 (626)
..+......+...| ++++|+..|+.++...|... ..++..++.++.+.|++++|+..|+++++. .|+.......
T Consensus 5 ~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 5 NEIYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 34444555555555 77777777777777655422 346667777777777777777777777765 4544332111
Q ss_pred HHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHH
Q 040279 117 INCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY 196 (626)
Q Consensus 117 l~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (626)
.- .++..+...+.. . ...+..+...+...|++++|+..|+++++.. |.+...+
T Consensus 81 ~~---~~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~ 133 (225)
T 2yhc_A 81 MY---MRGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTT 133 (225)
T ss_dssp HH---HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-------TTCTTHH
T ss_pred HH---HHHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHH
Confidence 10 012222222110 0 0112233344456789999999999999876 3333333
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHH
Q 040279 197 SIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN--LLTFNVMIDCLC 274 (626)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 274 (626)
....... .+...+. .....+...|.+.|++++|+..|+++++..+... ...+..+..++.
T Consensus 134 ~a~~~l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 134 DATKRLV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR 195 (225)
T ss_dssp HHHHHHH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH
Confidence 2211110 0111111 1223456777888888888888888887533311 245777888888
Q ss_pred hcCCHHHHHHHHHHHHhcC
Q 040279 275 KGGKINEANGLLELMIQRG 293 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~ 293 (626)
+.|++++|.+.++.+...+
T Consensus 196 ~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HTTCHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHHHHhhC
Confidence 8888888888888887764
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=3.2e-08 Score=89.00 Aligned_cols=183 Identities=11% Similarity=-0.044 Sum_probs=110.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV-EP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI--EIFNC 443 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 443 (626)
...+..+...+...|++++|...|+.+.+... .| ....+..+..++.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566677778888888888888776421 11 1345666777788888888888888877765422111 13444
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH------------
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVT------------ 510 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~------------ 510 (626)
+..++...|.. .+ ..|..+...+...|++++|...|+++++. .|+ ...
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence 44444432100 00 00111111222234444555555554443 122 111
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 511 -----FNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 511 -----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
...+...|.+.|++++|+..|+++++ ..|+ ...+..++.++.+.|++++|.+.++.+..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR----DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 13456778899999999999999998 5564 25688899999999999999999998863
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=5.2e-08 Score=86.58 Aligned_cols=176 Identities=9% Similarity=-0.049 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC----Ccc
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG----LVD 210 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 210 (626)
+|++.|++..+.| +..++..+...+...+++++|+..|++..+.+ ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 4667777777754 67777888888888888888888888887654 35566667777766 5 778
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHH
Q 040279 211 KAKELFLEMKGRGINPAVVVCTTLIHGFCC----AGNWEEVNGLFIEMLDLGPR-PNLLTFNVMIDCLCK----GGKINE 281 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 281 (626)
+|.+.|++..+.| +...+..|...|.. .+++++|+++|++..+.+.. .+...+..+...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888888877654 56667777777766 67788888888877765431 015566677777766 667777
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcC
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLV-G-----RIDTAREIFLSMHSKG 328 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 328 (626)
|...|++..+. ..+...+..|..+|... | ++++|..+|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777777665 22334555555555543 2 6777777777776665
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=3.9e-07 Score=84.75 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 040279 349 VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG--QAGYAQKLFDEMKLYNVEPDLSTYNILIDGL----CKN---NCV 419 (626)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 419 (626)
.++|+.++++++..+ +.+...|+.-...+...+ +++++++.++.+.... +.+..+++.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 356666666666542 223444555555555555 6666776666666542 22333343333333 333 677
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH--HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC------HHH
Q 040279 420 QEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLD--NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK------LEK 491 (626)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 491 (626)
++++.+++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+... -|...|+....++...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888887655 557777777777777778777 88888888887643 367788877777776666 899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhcCCCC-CCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS-KVVELLHKMAEPERN-LVP-DDTTFSIVVDLLAKDEKYHECSAVS 568 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 568 (626)
+++.+++++..+ +-|...|+.+...+.+.|+.. .+..+.+++.+ .+ ..| +...+..++.++.+.|+.++|.+.+
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD--LEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE--GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh--ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998875 668889999988888888754 46668888776 21 123 6788999999999999999999999
Q ss_pred HHHH
Q 040279 569 KSSY 572 (626)
Q Consensus 569 ~~~~ 572 (626)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=2.4e-06 Score=79.50 Aligned_cols=230 Identities=7% Similarity=-0.060 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHH----Hhc---CChH
Q 040279 280 NEANGLLELMIQRGLNPDRFTYNSLMDGYCLVG--RIDTAREIFLSMHSKGCKHTVVSYNILINGY----CKI---LNVE 350 (626)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 350 (626)
++|+.+.+.++..+.. +...|+.--..+...| +++++++.++.+.....+ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3455555544444211 2233333333444444 555555555555544322 333444333333 233 4566
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 040279 351 EAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAG--YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNC------VQEA 422 (626)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 422 (626)
+++.+++++.+.. +.+...|+.-.-.+...|.++ ++++.++++.+.+ +-|...++.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666666542 235555555555555555555 6666666666543 3344555554444444444 7778
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHhcccCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDN-AWELFHKLPQKG--LVPTVVTYSIMIHGLCRKGKLEKANDFLLYM 499 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (626)
++.++.+.... +.|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..++.+|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88887777665 5677788877777777777443 555667666532 1346777888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHH
Q 040279 500 EKNGCAPNVVTFNTL 514 (626)
Q Consensus 500 ~~~~~~p~~~~~~~l 514 (626)
.+.--+.....|...
T Consensus 285 ~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHTTCGGGHHHHHHH
T ss_pred HhccChHHHHHHHHH
Confidence 763113334444433
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=1.7e-08 Score=80.97 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...+...+..|.+.|++++|++.|++.++.+ +.+...|..+..+|.+.|++++|+..++++++ +.| +...|..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~l 87 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR----LDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH----hhhhhhHHHHHH
Confidence 3456666677777777777777777776653 44566677777777777777777777777776 556 35667777
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.+.|+++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777765
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=2.6e-08 Score=103.65 Aligned_cols=153 Identities=10% Similarity=-0.043 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|...|+++++..|. +...|..++..+.+.|++++|+..|++.++. .|+....... ++..+...|++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~------lg~~~~~~g~~ 73 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVAR------LGRVRWTQQRH 73 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHH------HHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH------HHHHHHHCCCH
Confidence 4899999999999887665 7889999999999999999999999999976 5554332222 35678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc---CCcc
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE---GLVD 210 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~ 210 (626)
++|...|++..+.. +.+...+..+..++.+.|++++|++.++++.+.+ +.+...+..+...+... |+.+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccccHH
Confidence 99999999999874 4467889999999999999999999999999876 56788899999999999 9999
Q ss_pred hHHHHHHHHhhCC
Q 040279 211 KAKELFLEMKGRG 223 (626)
Q Consensus 211 ~A~~~~~~~~~~~ 223 (626)
+|.+.+++..+.+
T Consensus 146 ~A~~~~~~al~~~ 158 (568)
T 2vsy_A 146 VLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998764
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=3.1e-08 Score=93.92 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHhHhcCCC------CC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPS------PP----ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKE 124 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~ 124 (626)
++++|..++++..+..+. ++ ...|...+..+...|++++|+..|.++... .+..........++..++
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA--HANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Confidence 677787777776543221 11 112333444455555555555555554432 111111111222222334
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCC---CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGV---RP--DVITYGTLINGFCRTGNLSVALRLHKKMV 179 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 179 (626)
..|...|++++|+..|++.+..-. .+ -..++..+..+|.. |++++|+..|++.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 445555555555555555433200 00 02234444444444 55555555555544
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=4.1e-08 Score=93.07 Aligned_cols=187 Identities=9% Similarity=-0.052 Sum_probs=111.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLY----NVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMN----KFE-FGIEIFNCLID 446 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~ 446 (626)
.|...|++++|...+.+..+. +-.+ -..+|..+...|...|++++|+..+++.... +.+ ....++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544321 1000 1234555566666667777776666654421 111 11345666777
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVP-----TVVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GCAPN-VVTFNTLMH 516 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~ 516 (626)
+|.. |++++|+..|++..+..... ...++..+..+|...|++++|++.|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7777 88888888888776521100 1456778888899999999999999888763 11111 225666777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCCH--HHHHHHHHHHHccCCHhHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPDD--TTFSIVVDLLAKDEKYHECSA 566 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 566 (626)
++...|++++|...|++.+ ......... ..+..++.++ ..|+.+++.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7888899999999999987 333232222 2344555555 5677766666
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=6.4e-08 Score=87.78 Aligned_cols=190 Identities=9% Similarity=-0.083 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-------------
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLL-------FGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL------------- 113 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~------------- 113 (626)
++...|++.|.++....|. ....|..+ ...+.+.++..+++..+...+.. .|+....
T Consensus 20 ~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccccc
Confidence 5999999999999999877 88999988 67777777778887777766542 3332211
Q ss_pred -----HHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 040279 114 -----NILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLI 188 (626)
Q Consensus 114 -----~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 188 (626)
..+--+ .+..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 97 ~v~~r~dl~La---yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------ 165 (282)
T 4f3v_A 97 PVTSPLAITMG---FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP------ 165 (282)
T ss_dssp ECSSHHHHHHH---HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS------
T ss_pred ccCCHhHHHHH---HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC------
Confidence 111111 2346677888888888888887653 433366667778888888888888887654421
Q ss_pred ccc--cHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 189 SKT--NIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA--VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG 258 (626)
Q Consensus 189 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 258 (626)
.+ ....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 123567777788888888888888888774322132 2355666677778888888888888887753
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=1.6e-07 Score=83.55 Aligned_cols=127 Identities=9% Similarity=-0.045 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+..+...+...|++++|...|++.. .|+...|..++.+|...|++++|++.+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455667778888888888888875 3577788888888888888888888888888764 4566778888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCC------------CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 521 NNKTSKVVELLHKMAEPERN------------LVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 521 ~g~~~~a~~~~~~~~~~~~~------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.|++++|.+.++++++...+ ..| ....+..++.++.+.|++++|.+.++++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888888888771110 112 13678888888888999999999988886
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=9.8e-09 Score=85.03 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=75.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...+..+...+.+.|++++|++.|+++.+.+ +.+...|..+..+|...|++++|+..|+++++ +.| +...+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~----l~P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA----LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh----hCCCCcHHHHHH
Confidence 5567777788888888888888888888764 44677788888888888888888888888887 667 46778888
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.+|.+.|++++|.+.|+++.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888876
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=4.3e-08 Score=78.65 Aligned_cols=111 Identities=11% Similarity=0.020 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456677788888888888888888887753 3357788888888888888888888888888864 4567788888888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDL 554 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~ 554 (626)
+...|++++|++.|+++++ +.|+ ...+..+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~----l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ----VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH----HCcCCHHHHHHHHHh
Confidence 8888888899888888888 7774 4555555443
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=4.2e-07 Score=85.45 Aligned_cols=176 Identities=6% Similarity=-0.054 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC-CC----H
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR-PD----V 152 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~ 152 (626)
+...+..+...|++++|..++++..+. .+........+..+..++..+...+++++|+..|++++..... ++ .
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 333467788999999999999999864 2322222222222323456677888999999999999985322 22 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC----CCCCC-
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR----GINPA- 227 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~- 227 (626)
.+++.++.+|...|++++|+..|+++++.-...+...+....++..+...|.+.|++++|++.+++..+. +..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 3689999999999999999999999884110000001233446777888888888888888887776542 11111
Q ss_pred cchHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 040279 228 VVVCTTLIHGFCCAG-NWEEVNGLFIEML 255 (626)
Q Consensus 228 ~~~~~~li~~~~~~~-~~~~a~~~~~~~~ 255 (626)
..+|..+..+|.+.| ++++|.+.+++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 345666777777777 3577777776654
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=2e-07 Score=82.94 Aligned_cols=130 Identities=11% Similarity=-0.071 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (626)
+..+...+...|++++|...|++.. +++...+..+..++...|++++|+..|++..+.. +.+...|..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455667778888888888887663 5577888888888889999999999998888753 3357788888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNV----------------VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
.|++++|++.|+++.+.. +.+. ..+..+..++...|++++|.+.++++++ +.|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS----MKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCSG
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCccc
Confidence 999999999999988853 2222 6788899999999999999999999998 67754
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=6.9e-07 Score=83.94 Aligned_cols=165 Identities=13% Similarity=0.008 Sum_probs=120.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CcCH----HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CC----HhHHHH
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMNKF-EFGI----EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PT----VVTYSI 478 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 478 (626)
.+..+...|++++|..+++....... .++. ..+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788899999999988775431 1221 13334666677778999999999988763211 22 236889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCCC-HHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKN-----GCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPE--RNLVPD-DTTFS 549 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~p~-~~~~~ 549 (626)
++.+|...|++++|+..++++.+. +..+. ..++..++..|.+.|++++|..+++++++.. .+..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998841 11222 2377889999999999999999999987510 111222 67899
Q ss_pred HHHHHHHccCC-HhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEK-YHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~-~~~A~~~~~~~~~ 573 (626)
.++.++.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999863
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=3.8e-08 Score=81.45 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=83.3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
.+...+..+...+.+.|++++|+..|+++.... +.+...|..+..+|...|++++|++.|+++.+.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 345567777788888888888888888888753 3357788888888888888888888888888864 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 516 HGFLQNNKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
.+|...|++++|...|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~----l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ----HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH----HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH----hCCCHH
Confidence 888888888888888888888 667765
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=8.3e-07 Score=83.39 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCC---CCCC--HhH
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEFG-----IEIFNCLIDGLCKAGRLDNAWELFHKLPQKG---LVPT--VVT 475 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~ 475 (626)
+...+..+...|++++|...++...+...... ...+..+...+...|++++|+..+++..+.. ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455566777888888887776665432211 1223345566677889999999888876521 1111 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-----
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKN--GCAPN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----- 544 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----- 544 (626)
|+.++..|...|++++|...++++.+. ..+.+ ..++..++..|...|++++|..+++++++ +.++
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~----~~~~~~~~~ 233 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE----ISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTBCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH----HHHhcCcHH
Confidence 888899999999999999999988731 01111 15788888899999999999999999876 2222
Q ss_pred --HHHHHHHHHHHHccCCHhHH-HHHHHHHH
Q 040279 545 --DTTFSIVVDLLAKDEKYHEC-SAVSKSSY 572 (626)
Q Consensus 545 --~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 572 (626)
..++..++.+|.+.|++++| ...++++.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788999999999999999 78788875
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=2.8e-07 Score=78.06 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|.+.+++..+.. +.+...+..++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456677778888999999999999888752 3367888889999999999999999999998864 5567788899999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHH--HHHHHHHccCCHhHHHHHHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVP-DDTTFS--IVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...|++++|...++++.+ +.| +...+. ..+..+.+.|++++|.+.+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVK----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999988 566 445553 34444778899999999998874
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=4.8e-08 Score=81.00 Aligned_cols=96 Identities=9% Similarity=-0.077 Sum_probs=70.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSI 550 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ 550 (626)
+...+..+...+...|++++|+..|+++.+.+ +.+...|..+..+|...|++++|+..|+++++ +.| +...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV----MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCchHHHH
Confidence 34556667777777788888888887777753 44666777777777788888888888888777 556 4566777
Q ss_pred HHHHHHccCCHhHHHHHHHHHH
Q 040279 551 VVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++.+|...|++++|.+.|+++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 7777888888888888887775
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=6.9e-06 Score=77.15 Aligned_cols=221 Identities=11% Similarity=0.029 Sum_probs=140.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG-QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN-N-CVQEAV 423 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~ 423 (626)
+..++|++++++++..+ +.+...|+.--..+...+ .+++++..++.+.... +.+..+++.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33456666666666552 224445555555555555 3666666666666543 33455555555555444 4 666777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH--------HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC-------
Q 040279 424 KLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLD--------NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK------- 488 (626)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 488 (626)
.+++.+.+.. +.+...|+.-..++.+.|.++ ++++.++++.+..+ -|...|+....++.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHH
Confidence 7777776554 445566655544444444444 78888888887643 377788887777777765
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhcCCC--CC-CCCH
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT--------------------SKVVELLHKMAEPER--NL-VPDD 545 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~~--~~-~p~~ 545 (626)
++++++.+++++... +-|...|+.+...+.+.|+. .+...+...+..... +. .++.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 688999999988864 55778888887777776654 344444444443100 01 3567
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+..++++|...|+.++|.+.++.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 889999999999999999999999974
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=6.3e-07 Score=84.23 Aligned_cols=180 Identities=6% Similarity=-0.079 Sum_probs=119.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC---C
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR---P 150 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~ 150 (626)
....+...+..+...|++++|+..+++.++.. +........+..+..++..+...|++++|+..+++....... +
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34556677888899999999999999988753 222222222222223456678889999999999999864211 1
Q ss_pred C--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC----C
Q 040279 151 D--VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG----I 224 (626)
Q Consensus 151 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~ 224 (626)
. ..+++.++..|...|++++|+..|+++.......+........++..+...|...|++++|++.+++..+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 1 457889999999999999999999998732100000001122577778888888888888888888765431 0
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 040279 225 NP-AVVVCTTLIHGFCCAGNWEEV-NGLFIEML 255 (626)
Q Consensus 225 ~~-~~~~~~~li~~~~~~~~~~~a-~~~~~~~~ 255 (626)
.. -..+|..+..+|...|++++| ...+++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00 134566677777777777777 55565554
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=3.6e-07 Score=73.64 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|.+.+++..+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455666666777777777777777766542 2346667777777777777777777777777653 344666777777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 561 (626)
.+...|++++|...++++.+ +.| +...+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALE----LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777776 455 455666666666666654
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=7.2e-07 Score=71.13 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|.+.++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666665532 2245566666666666677777777776666643 3455566666666
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHc
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAK 557 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 557 (626)
+...|++++|...++++.+ ..| +...+..++.++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE----LDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHh
Confidence 6677777777777777665 444 34445555554443
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=6.2e-07 Score=81.33 Aligned_cols=198 Identities=10% Similarity=-0.072 Sum_probs=142.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCC-------------
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTL-------INGFCRTGNLSVALRLHKKMVSGDYEN------------- 185 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~------------- 185 (626)
++ ..++...|.+.|.++.... +-....|..+ ..++...++..+++..++.........
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 44 5799999999999999884 4467888888 677777777777877777776532100
Q ss_pred -CccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 040279 186 -GLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN-- 262 (626)
Q Consensus 186 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 262 (626)
...+..-......+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 00011113345567788889999999999999888754 433366667778889999999999998655431 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 040279 263 LLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD--RFTYNSLMDGYCLVGRIDTAREIFLSMHSKG 328 (626)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 328 (626)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23677778889999999999999999875433243 2345566677888899999999999988874
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=1.7e-07 Score=77.62 Aligned_cols=108 Identities=14% Similarity=0.002 Sum_probs=77.6
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 426 FHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCA 505 (626)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (626)
++++.... +.+...+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|++.|+++.+.+ +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 34444332 3345566667777778888888888888877642 2357777778888888888888888888887753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 506 PNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+...+..+..+|...|++++|...|+++++
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777788888888888888888888876
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=4e-07 Score=87.23 Aligned_cols=132 Identities=9% Similarity=-0.030 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--------------VVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566666667777777777777777666321111 478888999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHH-HHHHHHHHh
Q 040279 503 GCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHEC-SAVSKSSYR 573 (626)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 573 (626)
. +.+...+..+..+|...|++++|+..|+++++ +.| +...+..++.++.+.|++++| .+.++++..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ----LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55678899999999999999999999999998 777 567888899999999999998 456677643
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=4.2e-07 Score=73.60 Aligned_cols=117 Identities=7% Similarity=-0.046 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
+...+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555566666666666666666666666542 2245566666666666677777777776666643 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccC
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDE 559 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 559 (626)
++...|++++|.+.++++.+ ..|+ ...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD----LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHhc
Confidence 66677777777777776665 4453 345555555555443
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1.9e-07 Score=87.05 Aligned_cols=193 Identities=11% Similarity=-0.038 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666677777777777777777776642 3356677777777778888888888887777654 456677777888
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS 525 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (626)
++...|++++|...|++..+.. |+. ..+...+....+ ..++.. +........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 8888888888888888776632 211 111111111111 111111 2223333344455544444332 368999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHH-HHHHHHHHHcc-CCHhHHHHHHHHHHh
Q 040279 526 KVVELLHKMAEPERNLVPDDTT-FSIVVDLLAKD-EKYHECSAVSKSSYR 573 (626)
Q Consensus 526 ~a~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~ 573 (626)
+|++.++++.+ ..|+... ...+...+.+. +++++|.++|+++..
T Consensus 153 ~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999988 6776544 34444455554 778999999998753
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=4.3e-05 Score=71.77 Aligned_cols=115 Identities=9% Similarity=0.041 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH----
Q 040279 386 YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNC-------VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRL---- 454 (626)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 454 (626)
++++.++++.+.. +-|...++.....+.+.+. +++++..+++..... +.|...|+.+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccc
Confidence 4455555554432 2344444444444444443 456666666555443 44555665555555544432
Q ss_pred ----------------HHHHHHHHhcccCC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 455 ----------------DNAWELFHKLPQKG-----LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 455 ----------------~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
........++...+ ..++...+..++..|...|+.++|.++++.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23333333333321 1245667777777777777777888888777654
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1e-06 Score=74.59 Aligned_cols=128 Identities=7% Similarity=-0.078 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLC 484 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (626)
.+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45556666777788888888887776544 4466777777778888888888888888877642 235667778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhh
Q 040279 485 RKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH--GFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~ 535 (626)
..|++++|.+.++++.+.. +.+...+..+.. .+...|++++|...+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887753 334445533333 3667788888887777654
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=1.5e-07 Score=80.88 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=80.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH-HHhcCCH--HH
Q 040279 415 KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG-LCRKGKL--EK 491 (626)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 491 (626)
..|++++|...++...... +.+...+..+...|...|++++|...|+++.+.. +.+...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3566677777777666543 4466677777777777777777777777776642 2356666677777 6677777 78
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|...++++.+.+ +.+...+..+...+...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 888887777753 34566777777777788888888888888777
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=3.5e-07 Score=78.56 Aligned_cols=126 Identities=9% Similarity=0.094 Sum_probs=101.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH-H
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS-L 203 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 203 (626)
..+...|++++|+..+++..+.. +.+...+..+...+...|++++|+..|+++.+.+ +.+...+..+... +
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLY 89 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 34567889999999999988774 4577889999999999999999999999998865 5667788888888 7
Q ss_pred HhcCCc--chHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 204 CKEGLV--DKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP 259 (626)
Q Consensus 204 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 259 (626)
...|++ ++|...+++..+.. +.+...+..+...|...|++++|...|++..+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 789998 99999999988764 33567888888999999999999999999988643
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.60 E-value=5.1e-08 Score=93.51 Aligned_cols=156 Identities=10% Similarity=-0.016 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh---------hHHHHHHhhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL---------TLNILINCFGNKER 125 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------~~~~ll~~~~~l~~ 125 (626)
++++|...|+......+. +...|..++..+.+.|++++|+..|+++++. .|+.. .......++..++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~-~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLE-QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEECCCCGGGCCHHHHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 455666666655443332 5678999999999999999999999999876 44431 11111233334567
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
.+...|++++|+..|+++++.. +.+..++..+..++...|++++|+..|+++++.+ |.+..++..+..++.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
Confidence 8889999999999999998874 4478889999999999999999999999998876 6677888888888888
Q ss_pred cCCcchH-HHHHHHHhh
Q 040279 206 EGLVDKA-KELFLEMKG 221 (626)
Q Consensus 206 ~g~~~~A-~~~~~~~~~ 221 (626)
.|+.++| .+.+..|..
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8888887 446666543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=3e-07 Score=75.66 Aligned_cols=106 Identities=8% Similarity=-0.110 Sum_probs=76.6
Q ss_pred HHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 040279 460 LFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE 538 (626)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (626)
.|+++... .| +...+..+...+...|++++|+..|+++.+.+ +.+...|..+..++...|++++|+..|+++++
T Consensus 6 ~l~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 80 (142)
T 2xcb_A 6 TLAMLRGL--SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGAL-- 80 (142)
T ss_dssp ---CCTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hHHHHHcC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 44444443 23 34556667777888888888888888887754 44667777788888888888888888888887
Q ss_pred CCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 539 RNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 539 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.| +...+..++.+|...|++++|.+.++++.
T Consensus 81 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 81 --MDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp --HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566 45677778888888888888888888875
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=3.9e-07 Score=80.26 Aligned_cols=164 Identities=10% Similarity=-0.033 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|.+.++.+.. .+.....++..++..+...|++++|+..+++........+ .......++..++..+...|++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHcCCH
Confidence 489999996665543 3444677899999999999999999999998875211111 1111222333456788999999
Q ss_pred HHHHHHHHHHHHC----CCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 134 KEATWLFKNMIAF----GVRP--DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 134 ~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
++|...+++.... +-.+ ....+..+...+...|++++|...+++........+. ......++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHCc
Confidence 9999999987664 1111 2345778889999999999999999988643100000 1112334566777777888
Q ss_pred CcchHHHHHHHHhh
Q 040279 208 LVDKAKELFLEMKG 221 (626)
Q Consensus 208 ~~~~A~~~~~~~~~ 221 (626)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888877776654
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=6.3e-07 Score=78.87 Aligned_cols=162 Identities=11% Similarity=-0.048 Sum_probs=104.7
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 128 CVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
...|++++|.+.++.+... ......++..+...+...|++++|...+++........+. .+....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcC
Confidence 4578999999966655442 2235678889999999999999999999998762100000 2344567778888888899
Q ss_pred CcchHHHHHHHHhhC----CCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--hhhHHHHHHHHHhc
Q 040279 208 LVDKAKELFLEMKGR----GIN--PAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG---PRPN--LLTFNVMIDCLCKG 276 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~ 276 (626)
++++|.+.+++..+. +-. .....+..+...+...|++++|...+++..... ..+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999998888876653 101 113446667777778888888888877765321 0111 12345566666677
Q ss_pred CCHHHHHHHHHHHHh
Q 040279 277 GKINEANGLLELMIQ 291 (626)
Q Consensus 277 ~~~~~a~~~~~~~~~ 291 (626)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 777777766666543
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=4.2e-07 Score=72.96 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=79.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--------
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-------- 544 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-------- 544 (626)
...+..++..+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.++++++ +.|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE----VGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH----hCcccchhhHHH
Confidence 4467778888999999999999999998864 45677888899999999999999999999887 4442
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 545 DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
..++..++.++...|++++|++.|++++.
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 24677888999999999999999999863
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.55 E-value=5.7e-07 Score=72.15 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG--CAPN----VVTFN 512 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 512 (626)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667777888888888888888877742 2346777888888888888888888888877631 1111 13566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIV 551 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 551 (626)
.++.++...|++++|++.|++.++ ..|++.....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~----~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS----EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh----hCcCHHHHHHH
Confidence 777788888888888888888887 66777665544
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=4.8e-07 Score=84.24 Aligned_cols=194 Identities=9% Similarity=-0.060 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666677777777776666642 2255666666666777777777777777766542 334556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
++...|++++|...|+...... +.+...+...+....+..+...... ......+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 7777777777777776655332 1111111111111111111111111 1111123344333333222 2577777
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHhhc
Q 040279 492 ANDFLLYMEKNGCAPNVV-TFNTLMHGFLQN-NKTSKVVELLHKMAE 536 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 536 (626)
|++.+++..+. .|+.. ....+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777664 44433 333333334333 567778888877765
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=9.6e-07 Score=70.77 Aligned_cols=95 Identities=8% Similarity=-0.024 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...|..++..+...|++++|++.|++..+.. +.+...|..+..++...|++++|+..++++++ +.| +...+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHH
Confidence 3455666666777777777777777776653 44566677777777777777777777777776 556 35667777
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.+.++++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHH
Confidence 777777777777777777765
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=2.8e-06 Score=67.54 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455666666777777777777777666543 3456667777777777777777777777776642 2356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 888888888888888777653 3345555555555443
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=1.3e-06 Score=70.59 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT 232 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (626)
..+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|++.+++..+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 334444444444445555555444444433 2334444444444444444444444444444331 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
.+..++...|++++|.+.|++..+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.6e-06 Score=69.48 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.+ +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777778888888888888877742 2356778888888888888888888888888763 4456777888888
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 040279 518 FLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~ 536 (626)
+...|++++|...++++++
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888888877
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=8.3e-06 Score=76.27 Aligned_cols=189 Identities=11% Similarity=-0.031 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC-HHHHHHH
Q 040279 419 VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG--RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK-LEKANDF 495 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 495 (626)
+++++.+++.+.... +-+..+|+.-..++...+ .+++++.+++++.+.. +-|...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777777654 557777777777777777 4788888888888864 3377788877777777787 5888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHcc--
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQN--------------NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKD-- 558 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-- 558 (626)
+.++++.+ +-|...|+.....+... +.++++++++.+++. +.| |...|..+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~----~~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF----TDPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhccC
Confidence 88888875 55777887777766554 457889999999988 778 567777666666655
Q ss_pred ---------CCHhHHHHHHHHHHhhccccccccCCc-hhhh----hhhheeccCC----ccchhccccCCCCCCchhHHH
Q 040279 559 ---------EKYHECSAVSKSSYRACLYVTIFQPSS-LGSM----IGCTVRLMPQ----PEMSDTLGDDGDGNAGPIILS 620 (626)
Q Consensus 559 ---------g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~l----~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~ 620 (626)
+.++++++.++++. ...|+. |..+ +.......+. .+...++.+++|.-.++|.=+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~ell-------e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQ-------ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHH-------hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 46789999999887 567887 5322 1111111122 223468888999998888655
Q ss_pred H
Q 040279 621 A 621 (626)
Q Consensus 621 ~ 621 (626)
.
T Consensus 316 ~ 316 (331)
T 3dss_A 316 R 316 (331)
T ss_dssp H
T ss_pred H
Confidence 4
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=1.1e-07 Score=83.54 Aligned_cols=128 Identities=13% Similarity=-0.052 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT----------------VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
...+..+...+...|++++|+..|++..+.... + ...|..+..+|...|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345556666777777777777777777663211 2 26788888889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH-HHHHHH
Q 040279 502 NGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS-AVSKSS 571 (626)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 571 (626)
.. +.+...+..+..+|...|++++|.+.|+++++ +.| +...+..+..++...|+.+++. ..+..+
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS----LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 55677888888999999999999999999988 667 5677778888888777777776 444554
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=2.2e-06 Score=68.88 Aligned_cols=119 Identities=13% Similarity=-0.034 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455666667777777777777777766543 4456677777777778888888888887777642 2346677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (626)
+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888877753 34566677777777666653
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=4.8e-05 Score=71.15 Aligned_cols=181 Identities=9% Similarity=-0.042 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC-HHHHHHH
Q 040279 384 AGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN--CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGR-LDNAWEL 460 (626)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 460 (626)
+++++.+++.+.... +.+..+|+.-...+.+.| .+++++.+++.+.+.. +-+...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555555432 334445554444444444 3566666666665544 3455555555555555555 4666666
Q ss_pred HHhcccCCCCCCHhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 040279 461 FHKLPQKGLVPTVVTYSIMIHGLCRK--------------GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN----- 521 (626)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 521 (626)
++++++..+ -|...|+.....+... +.++++++.+.+.+... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 666665432 2455555555444433 34677888888887754 55667777666665554
Q ss_pred ------CCHHHHHHHHHHhhcCCCCCCCCHH-HHHHHHH---HHHccCCHhHHHHHHHHHH
Q 040279 522 ------NKTSKVVELLHKMAEPERNLVPDDT-TFSIVVD---LLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 522 ------g~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~---~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++++++.++++.+ +.||.. ++..++. .....|..+++..++.++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle----~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE----LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh----hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 356788888888888 777642 2222221 2224677788888888874
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=9.1e-07 Score=70.21 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVD 553 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~ 553 (626)
.+..+...+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|+..++++++ +.| +...+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence 35566677778888888888888887753 44667777788888888888888888888887 667 4667778888
Q ss_pred HHHccCCHhHHHHHHHHHH
Q 040279 554 LLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~ 572 (626)
++...|++++|.+.++++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888875
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=4e-06 Score=65.89 Aligned_cols=109 Identities=10% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666667777777777777766542 2246666667777777777777777777776653 3355666777777
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVV 552 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~ 552 (626)
+...|++++|.+.++++.+ ..|+ ...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK----HEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT----TCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH----cCCCCHHHHHHHH
Confidence 7777777777777777766 4553 34444433
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=1.1e-06 Score=74.25 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
..+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444444445555555555555444421 1134444444444555555555555555444432 22344444444444
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 040279 519 LQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~ 536 (626)
...|++++|...|+++++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 455555555555554444
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=1.8e-06 Score=67.15 Aligned_cols=96 Identities=9% Similarity=0.031 Sum_probs=73.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTF 548 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~ 548 (626)
+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++++ ..|+ ...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~ 79 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN----VIEDEYNKDVW 79 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSCCTTCHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCcccchHHHH
Confidence 35566677777888888888888888887753 44566777788888888888888888888877 4454 6677
Q ss_pred HHHHHHHHcc-CCHhHHHHHHHHHH
Q 040279 549 SIVVDLLAKD-EKYHECSAVSKSSY 572 (626)
Q Consensus 549 ~~l~~~~~~~-g~~~~A~~~~~~~~ 572 (626)
..++.++.+. |++++|.+.++++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 7888888888 88888888888875
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=4.6e-07 Score=74.52 Aligned_cols=98 Identities=14% Similarity=-0.040 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
+...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|+..|++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455566677777888888888888877642 2356777777888888888888888888887764 445667777778
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 040279 517 GFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~ 536 (626)
++...|++++|...|+++++
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888776
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=3.4e-06 Score=68.58 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=70.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
.+...|..++..+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++++ +.| +...+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCchhHHHHH
Confidence 346667777777777777777777777777653 44566777777777777777777777777776 555 456677
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++.++...|++++|.+.++++..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777777753
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=9.6e-07 Score=71.10 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC--APN----VVTFN 512 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 512 (626)
..+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666665532 23455666666666666667776666666655320 111 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDL 554 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 554 (626)
.+..++...|++++|.+.++++.+ +.|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA----EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 666667777777777777777766 45555555544444
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=1.3e-07 Score=82.96 Aligned_cols=155 Identities=14% Similarity=0.002 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH----------HHHHHhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL----------NILINCFGNKE 124 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~----------~~ll~~~~~l~ 124 (626)
+++.|...++......+ .....+..++..+.+.|++++|+..|+++++. .|+...+ .....++..++
T Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ---CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 56666666553322111 14456778888899999999999999999875 2322200 00012223345
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+...|++++|+..+++.++.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHH
Confidence 66777788888888888877763 4456777777888888888888888888877654 455666666666666
Q ss_pred hcCCcchHH-HHHHHHh
Q 040279 205 KEGLVDKAK-ELFLEMK 220 (626)
Q Consensus 205 ~~g~~~~A~-~~~~~~~ 220 (626)
..++..++. ..+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 666555554 3444443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=2.2e-06 Score=69.80 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=70.8
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
.+...+..+...+...|++++|...|++..... +.+...|..++.++...|++++|...+++..+.+ +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 455666777777777777777777777776642 2346677777777777777777777777777753 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 040279 516 HGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.++...|++++|...++++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777888888777777766
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=6.2e-06 Score=67.99 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|++.+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555566666666666666666666553 233 4556666666666666666666666666542 33455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..++...|++++|...++++++
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.9e-05 Score=78.87 Aligned_cols=205 Identities=11% Similarity=-0.011 Sum_probs=132.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhHhcCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CC
Q 040279 45 LHENCKSGIINLNEARYFFGYMTHMQPSPPI----------------SSFNLLFGAVAKNRHYDAVISFYRKLVSIG-LL 107 (626)
Q Consensus 45 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~ 107 (626)
...+...| ++++|++.|..+++..+.... .++..++..|...|++++|...+.++.+.- ..
T Consensus 11 a~~l~~~~--~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 11 ARRLVNEK--QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHT--CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHCC--CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 44556666 999999999999886654221 247789999999999999999999876431 11
Q ss_pred CCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF----GVRP-DVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 108 p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
++......+.. .++..+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++...-
T Consensus 89 ~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 89 AKSKTVKVLKT---LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp CHHHHHHHHHH---HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 22222222211 1234566778999999999887643 2122 24567788999999999999999998876432
Q ss_pred CCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC----CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 183 YENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR----GINPA--VVVCTTLIHGFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 255 (626)
...+. .+....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..
T Consensus 166 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 166 KKLDD-KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSC-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred Hhccc-chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11000 1234556777788888888888888888776542 11111 1334455555566677777766666554
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1.4e-05 Score=62.63 Aligned_cols=110 Identities=14% Similarity=-0.016 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666667777777777777777776543 4466677777777778888888888888777642 2346677777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
+...|++++|.+.+++..+.+ +.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 888888888888888887753 33444444433
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=3.3e-06 Score=66.89 Aligned_cols=99 Identities=12% Similarity=-0.062 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.+ +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556667778888888888888887752 2357778888888888888888888888888763 445677788888888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCC
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
..|++++|+..++++++ +.|+
T Consensus 97 ~~g~~~~A~~~~~~al~----~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL----SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--------
T ss_pred HcCCHHHHHHHHHHHHH----hCcC
Confidence 88888888888888887 5564
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=3.9e-06 Score=65.22 Aligned_cols=98 Identities=14% Similarity=0.004 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP--NVVTFNTL 514 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 514 (626)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556667777777888888888888777642 2356677778888888888888888888888753 33 56777778
Q ss_pred HHHHHhc-CCHHHHHHHHHHhhc
Q 040279 515 MHGFLQN-NKTSKVVELLHKMAE 536 (626)
Q Consensus 515 ~~~~~~~-g~~~~a~~~~~~~~~ 536 (626)
..++... |++++|.+.+++++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 8888888 888888888888877
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=5.8e-06 Score=69.78 Aligned_cols=96 Identities=9% Similarity=0.007 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...|..+...+...|++++|++.|++.++.. +.+...|..+..+|...|++++|+..++++++ +.| +...+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV----VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 4455555566666666666666666665542 33455556666666666666666666666665 445 34556666
Q ss_pred HHHHHccCCHhHHHHHHHHHHh
Q 040279 552 VDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+.+|...|++++|.+.|+++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666666666666544
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.3e-05 Score=66.01 Aligned_cols=96 Identities=13% Similarity=-0.056 Sum_probs=86.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DD 545 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~ 545 (626)
.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|+..++++++ +.| +.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~ 99 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE----KDGGDV 99 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTSCCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh----hCccCH
Confidence 35778889999999999999999999999985 466 57888899999999999999999999998 566 57
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+..++.++...|++++|.+.++++.
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999999999999986
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=4.3e-06 Score=70.14 Aligned_cols=144 Identities=12% Similarity=0.002 Sum_probs=92.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC-CC--
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR-PD-- 151 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-- 151 (626)
..++..++..+...|++++|+..+++..+. .++.........++..++..+...|++++|...+++....... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI--AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 356788888889999999999999888754 1222222222333444667888899999999999887654100 11
Q ss_pred --HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 152 --VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 152 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
...+..+...+...|++++|...+++........+. .......+..+...+...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345777888888899999999988887643200000 112234455566666666666666666665543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.26 E-value=9.7e-06 Score=65.03 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC----HHHHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNV---VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----DTTFSIV 551 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l 551 (626)
++..+...|++++|.+.|+++.+.. +.+. ..+..++.++...|++++|...++++++ ..|+ ...+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS----RYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTSTTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH----HCCCCcccHHHHHHH
Confidence 3444555555555555555555432 1122 2444555555555555555555555554 3332 3445555
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.+.++++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555554
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=8.2e-06 Score=81.76 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC--------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP--------------TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCA 505 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (626)
.+..+...+.+.|++++|+..|+++++..... ....|..+..+|.+.|++++|+..++++++.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 34444455555555555555555554421110 14678888888899999999999999988864 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHH-HHHHH
Q 040279 506 PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSA-VSKSS 571 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 571 (626)
.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..+..++.+.|++++|.+ .++++
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE----VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999999988 7774 5677888888888888887764 34444
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.3e-05 Score=78.17 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-C-C--
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKN--GC--APN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLV-P-D-- 544 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-p-~-- 544 (626)
.++..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..+++++......+. | .
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 34455555555566666666555555432 11 111 23455555556666666666666555543100111 1 1
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 545 DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...+..++..+...|++++|...+.++.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1234444555555666666666665554
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=5.7e-06 Score=67.51 Aligned_cols=92 Identities=9% Similarity=-0.099 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN--------V-----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL 541 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (626)
.+......+.+.|++++|++.|++.++. .|+ . ..|..+..++.+.|++++|+..++++++ +
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----Y 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----h
Confidence 3455566667777777777777777764 233 2 2788888888889999999888888887 6
Q ss_pred -------CCC-HHHH----HHHHHHHHccCCHhHHHHHHHHHH
Q 040279 542 -------VPD-DTTF----SIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 542 -------~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.|+ ...| ...+.++...|++++|++.|+++.
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 886 4678 899999999999999999999996
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.23 E-value=5.3e-06 Score=69.57 Aligned_cols=135 Identities=9% Similarity=-0.011 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-APN----V 508 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~ 508 (626)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777776552100 11 23677778888888888888888888765310 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 509 VTFNTLMHGFLQNNKTSKVVELLHKMAEPE--RNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
..+..+...+...|++++|.+.++++.+.. .+..+ ....+..++.++...|++++|.+.++++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 466778888889999999999998887510 11111 235677888999999999999999999863
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=6.8e-06 Score=69.18 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccC-------CC---------CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQK-------GL---------VP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
..+......+.+.|++++|+..|++.+.. +. .| +...|..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34445555555666666666666555442 00 00 122344444444444444444444444444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 502 NGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+ +.+...|..++.+|...|++++|...|+++++
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 32 22334444444444444444444444444444
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=1.1e-05 Score=64.58 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC--CCC----HhHHH
Q 040279 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL--VPT----VVTYS 477 (626)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 477 (626)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666777777777777777766544 44566777777777777888888877777766321 112 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.++.++...|++++|.+.|+++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7788888888888888888888774 45655555544433
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1e-06 Score=88.29 Aligned_cols=155 Identities=12% Similarity=-0.001 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh---------hHHHHHHhhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL---------TLNILINCFGNKER 125 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------~~~~ll~~~~~l~~ 125 (626)
++++|...|+......+. ....|..++..+.+.|++++|+..|+++++. .|+.. .......++..++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445566555544433222 4567888999999999999999999999875 34321 11112233445667
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
++.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|+..|+++++.+ +.+...+..+..++.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 8999999999999999999875 4578889999999999999999999999999876 5677788888888888
Q ss_pred cCCcchHHH-HHHHHh
Q 040279 206 EGLVDKAKE-LFLEMK 220 (626)
Q Consensus 206 ~g~~~~A~~-~~~~~~ 220 (626)
.++.+++.+ .+..|.
T Consensus 398 ~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 398 AKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 888777653 444443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=1.1e-05 Score=78.22 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=73.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSI 550 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ 550 (626)
+..+|..+..+|.+.|++++|++.++++++.. +.+...+..+..+|...|++++|++.|+++++ +.| +...+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~----l~P~~~~~~~~ 346 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE----IAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence 45678888888999999999999999998864 44677888888899999999999999999988 677 4667777
Q ss_pred HHHHHHccCCHhHHHHH
Q 040279 551 VVDLLAKDEKYHECSAV 567 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~ 567 (626)
+..++...++.+++.+.
T Consensus 347 l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776543
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=2.4e-05 Score=62.66 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTV---VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTFNTLMH 516 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 516 (626)
.+...+...|++++|...|+++.+... .+. ..+..++.++...|++++|...++++.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 345566677777777777777766321 122 466667777777777777777777777642 223 455666777
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 040279 517 GFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~ 536 (626)
++...|++++|...++++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777776
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.17 E-value=7.7e-05 Score=76.44 Aligned_cols=149 Identities=7% Similarity=0.006 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC----------HHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGR----------LDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
...++|+..++.+.... +-+..+|+.-..++...|+ ++++++.++++.+.. +.+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567888888888765 4566777776666766666 899999999999864 34788999988889999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHcc----
Q 040279 487 G--KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN-KTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKD---- 558 (626)
Q Consensus 487 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 558 (626)
| +++++++.++++.+.+ +-|..+|+.-..++.+.| .+++++++++++++ ..| +...|.....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~----~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT----RNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT----TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH----HCCCCccHHHHHHHHHHhhcccc
Confidence 9 7799999999999976 568899999999999999 89999999999998 677 678888888887663
Q ss_pred ----------CCHhHHHHHHHHHH
Q 040279 559 ----------EKYHECSAVSKSSY 572 (626)
Q Consensus 559 ----------g~~~~A~~~~~~~~ 572 (626)
++++++.+.++++.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHH
Confidence 66899999998885
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=1.6e-05 Score=66.90 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMN--------K---------FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLP 465 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (626)
...+......+.+.|++++|+..|+..... . .+.+...|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777777777777777766543 0 02233566677777777777777777777777
Q ss_pred cCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 466 QKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 466 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+.. +.+...|..++.+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 642 234667777777777777777777777777764
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=5.9e-06 Score=83.16 Aligned_cols=122 Identities=14% Similarity=0.038 Sum_probs=97.5
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
.++..+...|++++|+..|++.++.. +.+..++..+..++.+.|++++|++.++++++.+ +.+...+..+..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~ 82 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 34567888999999999999998874 4468889999999999999999999999999876 667888999999
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH--HHhcCCHHHHHHHHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG--FCCAGNWEEVNGLFI 252 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 252 (626)
+|...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988763 2245566666665 778889999998887
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=3.2e-06 Score=66.61 Aligned_cols=85 Identities=18% Similarity=0.035 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhcccCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKG--LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|++.+++..+.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666532 12234456666666666666666666666666643 334556666666666666666666
Q ss_pred HHHHHhhc
Q 040279 529 ELLHKMAE 536 (626)
Q Consensus 529 ~~~~~~~~ 536 (626)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.12 E-value=5.3e-06 Score=79.42 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHH
Q 040279 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGL 483 (626)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 483 (626)
..+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345555666666777777777777665432 22111 112223333322221 13677778888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHH-HHccCCH
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDL-LAKDEKY 561 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 561 (626)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++ +.|+ ...+..+..+ ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887753 44667788888888888888888888888877 6664 3445555554 2345566
Q ss_pred hHHHHHHHHHH
Q 040279 562 HECSAVSKSSY 572 (626)
Q Consensus 562 ~~A~~~~~~~~ 572 (626)
+++.+.|+++.
T Consensus 316 ~~a~~~~~~~l 326 (338)
T 2if4_A 316 QKQKEMYKGIF 326 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 67777777764
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=7.1e-06 Score=82.54 Aligned_cols=158 Identities=8% Similarity=-0.049 Sum_probs=106.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
..+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|++.++++.+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556788888888888877654 4567888888888889999999999998888753 335778888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HhhcCCCCC--------CCCHHHHH
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHG--FLQNNKTSKVVELLH-----------KMAEPERNL--------VPDDTTFS 549 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~-----------~~~~~~~~~--------~p~~~~~~ 549 (626)
+|++.++++.+.. +.+...+..+..+ +.+.|++++|++.++ +..+..... ......+.
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 9999999988753 3344566666655 778899999999988 443311110 01234456
Q ss_pred HHHHHHHccCCHhH--HHHHHHHH
Q 040279 550 IVVDLLAKDEKYHE--CSAVSKSS 571 (626)
Q Consensus 550 ~l~~~~~~~g~~~~--A~~~~~~~ 571 (626)
.++..+.+.+.+.+ +..++.++
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a 194 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQV 194 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66677766666543 33355554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=3.3e-06 Score=66.51 Aligned_cols=85 Identities=12% Similarity=0.018 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCH
Q 040279 485 RKGKLEKANDFLLYMEKNG--CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 561 (626)
..|++++|+..|++.++.+ -+.+...+..+..+|...|++++|+..++++++ +.| +...+..++.++...|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHcCCH
Confidence 4688999999999999863 133456888999999999999999999999998 677 578899999999999999
Q ss_pred hHHHHHHHHHHh
Q 040279 562 HECSAVSKSSYR 573 (626)
Q Consensus 562 ~~A~~~~~~~~~ 573 (626)
++|.+.++++..
T Consensus 78 ~~A~~~~~~al~ 89 (117)
T 3k9i_A 78 EQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=1.5e-05 Score=64.96 Aligned_cols=94 Identities=10% Similarity=-0.054 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-------------VVTYSIMIHGLCRKGKLEKANDFLLYMEKN----- 502 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 502 (626)
+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455556666666666666666653 222 238889999999999999999999999884
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 503 GCAPN-VVTF----NTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 503 ~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.|+ ...| .....++...|++++|+..|+++++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11455 4577 8889999999999999999999987
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=8.5e-06 Score=78.00 Aligned_cols=150 Identities=7% Similarity=-0.051 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34455555555666666666666665552 222221 112222333222111 13788899999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhhhhhheecc
Q 040279 519 LQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCTVRLM 597 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 597 (626)
.+.|++++|+..++++++ +.| +...+..++.+|...|++++|.+.|+++.. ..+..+..+..+........
T Consensus 241 ~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT----EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998 677 578899999999999999999999999852 12223333333322211222
Q ss_pred CC----ccchhccccCCCCCCc
Q 040279 598 PQ----PEMSDTLGDDGDGNAG 615 (626)
Q Consensus 598 ~~----~~~~~~~~~~~p~~~~ 615 (626)
+. ....+++++..|+++.
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCCC
Confidence 22 3345677888888764
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=7.6e-05 Score=76.47 Aligned_cols=171 Identities=12% Similarity=-0.012 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC--
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNC----------VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG-- 452 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 452 (626)
++|.+.++++.... +.+...|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34455555555432 2233344443333433344 667777777766554 446666666666666667
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG-KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN---------- 521 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------- 521 (626)
+++++++.++++.+... -+...|+.-..++.+.| .++++++.++++++.+ +-|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 56777777777777532 36677777777777777 7777777777777764 44667777766665552
Q ss_pred ----CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhH
Q 040279 522 ----NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHE 563 (626)
Q Consensus 522 ----g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 563 (626)
+.++++++++.+++. +.| +...|..+..++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~----~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFF----TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHH----HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHh----hCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999998 778 56889888999988888555
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.8e-06 Score=64.72 Aligned_cols=94 Identities=5% Similarity=-0.040 Sum_probs=73.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-------
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD------- 544 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------- 544 (626)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|++.++++++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR----YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCccHHHHH
Confidence 45677888888889999999999999988864 45677888888899999999999999999988 6675
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 545 DTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
...+..++.++...|++++|.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 45566667777777766666555444
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=7.9e-05 Score=72.07 Aligned_cols=139 Identities=7% Similarity=-0.076 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGL 448 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (626)
..+..+...+.+.|++++|...|++..+. .+... .....+ ...... +.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 44555666666677777777776666541 00000 000011 111011 33456788888888
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
.+.|++++|+..++++++.. +.+...|..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888753 2357788888889999999999999999988863 345667777777777777776665
Q ss_pred H
Q 040279 529 E 529 (626)
Q Consensus 529 ~ 529 (626)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=6.8e-06 Score=66.89 Aligned_cols=89 Identities=9% Similarity=0.027 Sum_probs=70.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhcCCCCCCCC-HHHHHHHHH
Q 040279 485 RKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT----------SKVVELLHKMAEPERNLVPD-DTTFSIVVD 553 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~ 553 (626)
+.+.+++|.+.+++..+.+ +.+...|..+..++...+++ ++|+..|+++++ +.|+ ...|..++.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcCcHHHHHHHHH
Confidence 4456788888888887764 55677777777777776654 599999999999 8884 688999999
Q ss_pred HHHccC-----------CHhHHHHHHHHHHhhccccccccCCc
Q 040279 554 LLAKDE-----------KYHECSAVSKSSYRACLYVTIFQPSS 585 (626)
Q Consensus 554 ~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~p~~ 585 (626)
+|...| ++++|.+.|+++. ..+|+.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl-------~l~P~~ 124 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAV-------DEQPDN 124 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------HHCTTC
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHH-------HhCCCC
Confidence 998774 8999999999997 456664
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00027 Score=57.17 Aligned_cols=107 Identities=9% Similarity=-0.045 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVV 528 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 528 (626)
++++|+++|++..+.| +.... +...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555543 11111 4444444455555555555555543 44455555555554 45555555
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHH
Q 040279 529 ELLHKMAEPERNLVPDDTTFSIVVDLLAK----DEKYHECSAVSKSSY 572 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 572 (626)
++|+++.+ . -+...+..++..|.. .+++++|.++++++.
T Consensus 82 ~~~~~Aa~--~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 82 QYYSKACG--L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHc--C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 55555555 1 244455555555555 555566665555553
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.00012 Score=73.19 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=88.5
Q ss_pred HHHcCCHHHHHHHHHhcccC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHH
Q 040279 448 LCKAGRLDNAWELFHKLPQK---GLVPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKN---GCAPN----VVTFNT 513 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~ 513 (626)
+..+|++++|+.++++.++. -+.|+ ..+++.|+.+|..+|++++|+.++++.++. -+.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44677788887777766541 11122 457888888888899999998888887642 11222 347788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCC-CCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhhc
Q 040279 514 LMHGFLQNNKTSKVVELLHKMAEPE-RNLVPD----DTTFSIVVDLLAKDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 575 (626)
|...|...|++++|..+++++++.. .-+-|+ ..+...+..++...|++++|+..|+++.++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888876410 012233 3445677778888999999999999986544
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00034 Score=56.61 Aligned_cols=113 Identities=14% Similarity=0.013 Sum_probs=79.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh---
Q 040279 129 VENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK--- 205 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 205 (626)
..+++++|+.+|++..+.| .++ .. +...|...+.+++|++.|++..+.+ ++..+..|...|..
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSS
T ss_pred CccCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHcCCC
Confidence 3456788888888888776 222 33 6666767777778888888877654 35566677777776
Q ss_pred -cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040279 206 -EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC----AGNWEEVNGLFIEMLDLG 258 (626)
Q Consensus 206 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 258 (626)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 73 ~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 677777777777777764 55666677777766 677777777777776665
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=4.3e-05 Score=76.26 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=91.9
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC-----C-CCCC-HhH
Q 040279 85 VAKNRHYDAVISFYRKLVSI---GLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF-----G-VRPD-VIT 154 (626)
Q Consensus 85 ~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~ 154 (626)
+..+|++++|+.++++.++. -+.|+... ++..+..++..|..+|++++|+.++++.+.. | -.|+ ..+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLY---VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 55799999999999988743 12233222 3333445678899999999999999997653 2 1222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYE-NGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
++.|..+|...|++++|+.++++++..-.. .|...|....+...+..++...+.+++|+.+|..+++
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999988642100 0111233344455666677777777788777777765
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.80 E-value=0.00015 Score=53.45 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+ +.| +...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCHHHHHHH
Confidence 4456666677777777777777777776653 33556667777777777777777777777776 455 35556666
Q ss_pred HHHHHcc
Q 040279 552 VDLLAKD 558 (626)
Q Consensus 552 ~~~~~~~ 558 (626)
+.++.+.
T Consensus 84 ~~~~~~~ 90 (91)
T 1na3_A 84 GNAKQKQ 90 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.78 E-value=3.6e-05 Score=62.62 Aligned_cols=96 Identities=5% Similarity=-0.059 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK----------LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
.+.+++|++.+++..+.. +.+...|..+..++...++ +++|+..|++.++.+ +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344566666666665532 2245556555555555544 458888888888753 3356677888888876
Q ss_pred c-----------CCHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 040279 521 N-----------NKTSKVVELLHKMAEPERNLVPDDTTFSIVV 552 (626)
Q Consensus 521 ~-----------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 552 (626)
. |++++|++.|+++++ +.|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~----l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD----EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 6 489999999999998 889866554433
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00018 Score=56.15 Aligned_cols=79 Identities=8% Similarity=-0.007 Sum_probs=44.1
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.|+..|++..+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555432 2245555566666666666666666666665542 3344555556666666666666666666655
Q ss_pred c
Q 040279 536 E 536 (626)
Q Consensus 536 ~ 536 (626)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00015 Score=56.62 Aligned_cols=78 Identities=9% Similarity=-0.050 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
|+..|+...... +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 3445555666666666666666666666665532 22345555666666666666666666666554
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00019 Score=55.39 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...+..+...+...|++++|++.++++++ +.| +...+..++.++.+.|++++|.+.++++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456788889999999999999999999998 667 57889999999999999999999999997
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00031 Score=53.03 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=42.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+...+..+..+|...|++++|++.|+++.+.+ +.+...|..+..+|...|++++|.+.++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666777777777777777766653 33455666666677777777777777776665
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.52 E-value=0.00069 Score=49.80 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666667777777777777777776642 2346667777777777777777777777777653 3345566666655
Q ss_pred HHh
Q 040279 518 FLQ 520 (626)
Q Consensus 518 ~~~ 520 (626)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00046 Score=52.07 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+.+...+..+..+|...|++++|+..|+++++ +.| +...|..++.+|...|++++|.+.++++.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVE----TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44677899999999999999999999999998 677 467899999999999999999999999863
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.0054 Score=57.55 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=62.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 040279 470 VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFS 549 (626)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~ 549 (626)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr----L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN----LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCcChHH
Confidence 4567788888777777799999999999998864 7877787888888889999999999999988 788877765
Q ss_pred HH
Q 040279 550 IV 551 (626)
Q Consensus 550 ~l 551 (626)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.12 E-value=0.00054 Score=51.49 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVV-TFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+...|++++|++.++++.+.. +.+.. .+..+..++...|++++|.+.|+++++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445666677777777777766643 33445 666666677777777777777777766
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.94 E-value=0.0047 Score=49.58 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=36.4
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG---KLEKANDFLLYMEKNGCAP--NVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
..+.+-|.+..+.|. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444433332 34444444555555544 3335555555554432 12 12333344444455555555555
Q ss_pred HHHHhhc
Q 040279 530 LLHKMAE 536 (626)
Q Consensus 530 ~~~~~~~ 536 (626)
+++.+++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555555
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.87 E-value=0.011 Score=55.37 Aligned_cols=49 Identities=8% Similarity=-0.087 Sum_probs=34.6
Q ss_pred CCCHhHHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 149 RPDVITYGTLINGFCR--T---GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
+.+..+|...+++... . .+..+|+.+|+++++.+ |.....|..+..+|.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDI 244 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 5677788877766543 3 34578999999999987 555667766655554
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.83 E-value=0.012 Score=43.32 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=59.7
Q ss_pred CCChhhHHHHHHHHhhcC-CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 35 SSPETQLNEFLHENCKSG-IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
|..+..+..+...+...+ ....++|..+|++.+..+|. ++.+...++..+.+.|++++|+..|+++++. .|+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDPNLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccH
Confidence 344455555555554443 12379999999999999887 8899999999999999999999999999977 4553334
Q ss_pred HHH
Q 040279 114 NIL 116 (626)
Q Consensus 114 ~~l 116 (626)
..+
T Consensus 80 ~~i 82 (93)
T 3bee_A 80 VTI 82 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.0063 Score=59.71 Aligned_cols=97 Identities=8% Similarity=0.042 Sum_probs=72.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC---CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC-----C-CCCC
Q 040279 81 LFGAVAKNRHYDAVISFYRKLVSIG---LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF-----G-VRPD 151 (626)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~ 151 (626)
.+..+.++|++++|+.++++.+... +.|+.. .++..+..++..|..+|++++|+.++++++.. | ..|+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~---~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINI---YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 3455678999999999999998542 233322 23344445678899999999999999988753 2 1222
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 152 -VITYGTLINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 152 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
..+++.|...|...|++++|+.+++++.+
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45688999999999999999999998764
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.77 E-value=0.023 Score=41.73 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=44.4
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 471 PTVVTYSIMIHGLCRKGK---LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+|...+..+..++...++ .++|..++++..+.+ +-+......+...+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666666654444 577777777777753 44556667777777777777777777777776
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.77 E-value=0.0028 Score=62.13 Aligned_cols=91 Identities=7% Similarity=-0.077 Sum_probs=68.1
Q ss_pred hcCChhHHHHHHHHHHHC---CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC-----C-CCCC-HhHHH
Q 040279 87 KNRHYDAVISFYRKLVSI---GLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF-----G-VRPD-VITYG 156 (626)
Q Consensus 87 ~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 156 (626)
..|+|++|+.++++.++. -+.|+... ++..+.+++..|..+|++++|+.++++.+.. | -.|+ ..+++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 467899999999988742 22333322 2333345678899999999999999998753 2 1222 45689
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
.|..+|...|++++|+.+++++++
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999998865
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0054 Score=60.11 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKN-----G-CAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+++.|+.+|..+|++++|+.++++.++- | -.|+ ..+++.|...|...|++++|..+++++.+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345666777777777777777776666531 1 0111 23455555566666666666665555543
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.23 Score=41.00 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=94.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
.....|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345689999999988766 3678899999999999999999999999875 3455556777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
-.++-+.....| . ++....++...|+++++.+++.+.-+ .|.. +......|-.+.|.++.+++
T Consensus 79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r-----~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS-----LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC-----HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC-----hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 777766666654 2 45556677788999999999988755 2211 11122367778888887776
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.012 Score=43.84 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=51.0
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVI-TYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
+..+...|++++|+..|+++++.. +.+.. .+..+..++...|++++|++.|+++++.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788999999999999999874 44667 89999999999999999999999999876
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.019 Score=46.16 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCC-C--CHHHHHHHHHHHHccCCHhH
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN---KTSKVVELLHKMAEPERNLV-P--DDTTFSIVVDLLAKDEKYHE 563 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~ 563 (626)
..+.+-|.+..+.+ +++..+...+.+++.+.+ +.++++.+++...+ .. | ..+.+..++-++.+.|++++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCccchHHHHHHHHHHHHHccCHHH
Confidence 33444444444443 345555555555555555 33455555555555 22 3 23445555555555555655
Q ss_pred HHHHHHHHHhh
Q 040279 564 CSAVSKSSYRA 574 (626)
Q Consensus 564 A~~~~~~~~~~ 574 (626)
|.++++++++.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555543
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.41 E-value=0.016 Score=56.76 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=66.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC-----C-CCC-Ccc
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYE-NGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR-----G-INP-AVV 229 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~ 229 (626)
.+..+.+.|++++|+.++++.+..... .+...+....+++.+...|...|++++|+.++++.... | ..| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355666789999999999999865311 12222344567788888888888888888888876542 1 111 124
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
+++.|...|...|++++|+.++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566777777777777777777766653
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.38 E-value=0.15 Score=45.90 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc-----CCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhc-
Q 040279 168 LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE-----GLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCA- 241 (626)
Q Consensus 168 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 241 (626)
...|...++++++.+. .-.+...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++..
T Consensus 179 l~~A~a~lerAleLDP-----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLWP-----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHCT-----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 5688889999998761 011466888999999884 89999999999998874222477777788888774
Q ss_pred CCHHHHHHHHHHHHHCCCC--CChhhHHH
Q 040279 242 GNWEEVNGLFIEMLDLGPR--PNLLTFNV 268 (626)
Q Consensus 242 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 268 (626)
|+.+++.+.+++.+...+. |+....+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8999999999999887665 55444443
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.33 E-value=0.15 Score=55.01 Aligned_cols=131 Identities=14% Similarity=0.002 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA 451 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (626)
..++..+.+.|.++.|.++.+. .. .-.......|++++|.++.+.+ .+...|..+.+.+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4555566666666666654421 11 0122334567777777765322 3556777777777777
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELL 531 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (626)
|+++.|.+.|.++.+ |..+...+...|+.+...++-+.....| + ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~---~---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG---K---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---c---hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776654 2334444445566665555544444433 1 222333445556666655555
Q ss_pred HHhh
Q 040279 532 HKMA 535 (626)
Q Consensus 532 ~~~~ 535 (626)
.++-
T Consensus 760 ~~~~ 763 (814)
T 3mkq_A 760 IKSQ 763 (814)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 5543
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.28 E-value=0.11 Score=46.58 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 130 ENRIKEATWLFKNMIAFGVRPD---VITYGTLINGFCRT-----GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
.+....|...+++.++. .|+ ...|..++..|.+. |+.++|.+.|++.++.+ ...+..++.....
T Consensus 176 l~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln------P~~~id~~v~YA~ 247 (301)
T 3u64_A 176 PDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC------SAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC------CTTCSHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC------CCCCchHHHHHHH
Confidence 34567888999999887 455 66899999999994 99999999999999976 1124777888888
Q ss_pred HHHhc-CCcchHHHHHHHHhhCCCC--CCcchHHHH
Q 040279 202 SLCKE-GLVDKAKELFLEMKGRGIN--PAVVVCTTL 234 (626)
Q Consensus 202 ~~~~~-g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 234 (626)
.++.. |+.+.+.+.+++....... |+....+.+
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 88885 9999999999999987544 444444433
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.17 E-value=0.04 Score=41.47 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=43.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG------CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
+..-+..++..+...|++..|...|+.+.+.. -.+....+..+..++.+.|++++|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~----l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE----LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC
Confidence 33444566666666677777777666665431 122345666777777777777777777777776 56643
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.13 E-value=9.9e-06 Score=77.10 Aligned_cols=424 Identities=14% Similarity=0.085 Sum_probs=201.9
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
.|..+..+....+ .+.+|++.|-+. .|+..|..++.+..+.|++++-+..+.-..+..-.| ..-+.++-
T Consensus 56 VWs~LgkAqL~~~--~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~- 124 (624)
T 3lvg_A 56 VWSQLAKAQLQKG--MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIF- 124 (624)
T ss_dssp CSSSHHHHTTTSS--SCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHH-
T ss_pred HHHHHHHHHHccC--chHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHH-
Confidence 3444444444333 555555554322 244456666666666666666666665554442222 33333332
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (626)
+|.+.++..+-.+.+. .|+..-...++.-|...|.++.|.-+|..+.. |..|
T Consensus 125 ------ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------------~akL 176 (624)
T 3lvg_A 125 ------ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRL 176 (624)
T ss_dssp ------HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------------CTTT
T ss_pred ------HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------------HHHH
Confidence 3444444333222111 24444455566666666666665555544321 2233
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKI 279 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 279 (626)
..++.+.|++..|.+.- ++ ..++.+|..+-.+|...+++.-|.-.--.++-. ......++..|-..|.+
T Consensus 177 AstLV~L~~yq~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f 245 (624)
T 3lvg_A 177 ASTLVHLGEYQAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYF 245 (624)
T ss_dssp SSSSSSCSGGGSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCH
Confidence 33444445554444321 11 125667777777777777766665544444321 11222345556666666
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCC------CChhhHHHHHHHHHhcCChHHH
Q 040279 280 NEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK-GCK------HTVVSYNILINGYCKILNVEEA 352 (626)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~A 352 (626)
++-+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|.+..++|.|
T Consensus 246 ~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 246 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp TTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 66666666655321 22344555555555543 333333333322111 111 1234455566666666666655
Q ss_pred HHHHH-------------HHHHCCCCCChhhHHH---------------HHHHHHHcCCHHHHHHHHHHHHh--------
Q 040279 353 MSLYR-------------QIISNGVRQTVITYNT---------------LLSGLFQAGQAGYAQKLFDEMKL-------- 396 (626)
Q Consensus 353 ~~~~~-------------~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~-------- 396 (626)
...+- ++... ..+...|.. |+..+...=+...+.+++++.-.
T Consensus 324 ~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL 401 (624)
T 3lvg_A 324 IITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYL 401 (624)
T ss_dssp HHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGG
T ss_pred HHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHH
Confidence 43210 00000 112233333 33333222233333333333210
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040279 397 --YNVEPDLSTYNILIDGLCKNNCVQEAVK------------LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFH 462 (626)
Q Consensus 397 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (626)
..-.-+..+-.++-+.|....+++.-+. +-+++.++ .-.+.-..-...|.+.++|++++.+.+
T Consensus 402 ~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 402 RSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp TSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0001122333344445555555543322 22223322 122233333445667777887776543
Q ss_pred hcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 463 KLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLH 532 (626)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (626)
+=. .|.-.+.....+|+.+-|.++++-..+.| +...|...+-.|...=+++.++++--
T Consensus 479 kDk---------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlElaW 536 (624)
T 3lvg_A 479 KDS---------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLETAW 536 (624)
T ss_dssp TTC---------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHHHH
T ss_pred hcc---------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHHHH
Confidence 311 12222334566788888888888888865 66778888887877777888777633
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.34 Score=39.92 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=83.7
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 128 CVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
...|+++.|.++.+++ .+...|..|.......|+++-|...|++... +..+.-.|...|
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------FDKLSFLYLVTG 74 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------HHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------HHHHHHHHHHhC
Confidence 3468888888887765 2677888888888888998888888888632 345555666677
Q ss_pred CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040279 208 LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (626)
+.++-.++-+....+| -++.....+...|+++++.++|.+..+ +....-.....|..+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHH
Confidence 7777666666555543 355666667778888888888755422 1111222233566667777766
Q ss_pred HH
Q 040279 288 LM 289 (626)
Q Consensus 288 ~~ 289 (626)
.+
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.03 E-value=0.18 Score=39.94 Aligned_cols=107 Identities=16% Similarity=0.034 Sum_probs=77.6
Q ss_pred CCHhhHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCH-hhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 73 PPISSFNLLFGAVAKNRHY------DAVISFYRKLVSIGLLPDF-LTLNILINCFGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
.|.++|-..+..+-+.|+. +..+++|+++... +.|+. ..+...+..+...+ .+...++.++|.++|+.+++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3778888888888888998 8888999988764 23332 22222322222111 22344899999999999987
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 146 FGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 146 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.+ +-=...|......-.++|++..|.+++.+.+..+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 63 3237778888888889999999999999999876
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.02 E-value=0.14 Score=55.44 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=99.3
Q ss_pred HHHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 040279 377 GLFQAGQAGYAQK-LFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLD 455 (626)
Q Consensus 377 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (626)
.....+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+. +. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3345788888866 44221 1122336777788889999999877631 11 1123456789999
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-------CAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.... ..-+...+..+.......|+++.|.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence 999997765 367899999999999999999999999875310 0112223333344444444444444
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 529 ELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
..+.+.-+ +...++.|.+.|++++|..+-++.
T Consensus 744 ~~~~~~g~-----------~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 744 NAYWIAGD-----------IQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCC-----------HHHHHHHHHHcCChHHHHHHHHHh
Confidence 44444332 334455566666666666666554
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.96 E-value=0.033 Score=42.00 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=52.3
Q ss_pred hhhhhhhhhcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 121 GNKERGLCVENRIKEATWLFKNMIAFG------VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 121 ~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
..++..+...|+++.|...|+...+.- -.+....+..+..++.+.|+++.|+..++++.+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 346788899999999999999987741 12356788999999999999999999999998865
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.85 E-value=0.45 Score=36.75 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=80.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
-.|..++..++..+.... .+..-+|.++--....-+-+-..++++.+-+. -|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356666667766666654 24444454444444444444444555444321 111 12344444444
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
.+-.+ ..+.+.+...++.+..+|+-|+-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44322 224555666677777778877777777775432 356777777777888888888888888887777764
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.72 E-value=0.092 Score=40.44 Aligned_cols=81 Identities=9% Similarity=-0.006 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhcCCCCCCC--CHHHHHHHHHHHHccCCHh
Q 040279 488 KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK---VVELLHKMAEPERNLVP--DDTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 562 (626)
....+.+-|.+....| .++..+-..+.+++.+..+... ++.+++...+ . -.| .......++-++.+.|+++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~-~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--K-GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--T-SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--c-CCcchHHHHHHHHHHHHHHhhhHH
Confidence 3444455555554444 3666666667777777666654 6677777665 1 123 3445566666777777777
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|.++++.++
T Consensus 92 ~A~~~~~~lL 101 (126)
T 1nzn_A 92 KALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.40 E-value=0.68 Score=35.77 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-CC----------------CCCHhHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK-GL----------------VPTVVTYSI 478 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----------------~p~~~~~~~ 478 (626)
.|..++..+++.+.... .+..-+|.++.-....-+-+-..++++.+-.. .+ ..+....+.
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 45666666666555542 23444555554444444444445554444321 00 012233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+..+|+-++-.+++..+... .+|++..+..+..+|.+.|+..+|.++++++-+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444444444444444443221 244444444444444444444444444444444
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.06 E-value=0.00024 Score=67.83 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=159.6
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
++++...++..+|++-|-+. .|+..|..++.+..+.|.+++-++.+....+.. .++..=+.|+-+|
T Consensus 61 gkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--------ke~~IDteLi~ay 126 (624)
T 3lvg_A 61 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFAL 126 (624)
T ss_dssp HHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--------CSTTTTHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------cccccHHHHHHHH
Confidence 56777788888887655332 366678889999999999999999998887654 3344557789999
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------CCCCh
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG--------------------PRPNL 263 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~ 263 (626)
++.++..+-.+.+. .|+..-...+..-|...|.++.|.-+|..+.... -..++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 99999877544331 3566677778888888888888877776543211 12366
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040279 264 LTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGY 343 (626)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (626)
.||..+-.+|...+++.-|.-.--.+.-. +| ....++..|-..|.+++.+.+++...... ......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 78999989999988887765543333322 12 23345667888899999999998877432 23566788888888
Q ss_pred HhcCChHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHHcCCHHHHH
Q 040279 344 CKILNVEEAMSLYRQIISN-GVR------QTVITYNTLLSGLFQAGQAGYAQ 388 (626)
Q Consensus 344 ~~~~~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 388 (626)
++- +.++.++.++....+ +++ -....|..++-.|.+-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 764 556666555543322 111 12345666666777777776554
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.94 E-value=0.14 Score=39.44 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK---ANDFLLYMEKNGCAP--NVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 526 (626)
..+..+.+-|.+....|. ++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344445555554444332 566666666667776665554 666777666643 23 22344445556777777777
Q ss_pred HHHHHHHhhcCCCCCCCC
Q 040279 527 VVELLHKMAEPERNLVPD 544 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p~ 544 (626)
|.++++.+++ +.|+
T Consensus 93 A~~~~~~lL~----~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ----TEPQ 106 (126)
T ss_dssp HHHHHHHHHH----HCTT
T ss_pred HHHHHHHHHH----hCCC
Confidence 7777777777 6664
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.55 E-value=0.46 Score=37.59 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHHHHHhcCCc------chHHHHHHHHhhCCCCCCcc-hHHHHHH------HHHhcCCHHHHHHHHHHHH
Q 040279 189 SKTNIFSYSIIIDSLCKEGLV------DKAKELFLEMKGRGINPAVV-VCTTLIH------GFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~ 255 (626)
.+.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888888888888 8888888888764 455431 1111111 1123477888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040279 256 DLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD 297 (626)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (626)
+.+-.- ...|......-.++|++..|.+++......+.+|.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 653332 55666666777778888888888888887765433
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.22 E-value=0.25 Score=39.93 Aligned_cols=116 Identities=9% Similarity=-0.019 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC-CCCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQK-GLVPTV-------VTYSIMIHGLCRKGKLEKANDFLLYMEKN--GCAPNVVT 510 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~ 510 (626)
+..-+..+...|.++.|+-+.+.+... +..|+. .++..++.++...|++..|...|++.++. .+..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344455666777777777777665442 122331 24555666777777777777777776542 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
...+. ....... . ....++.+.-..+..+|.+.|++++|+.+++.+
T Consensus 103 ~~~~~----~~ss~p~---------s--~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------S--QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccc----ccCCCcc---------c--ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11010 0000000 0 113345667777899999999999999999987
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.30 E-value=1.3 Score=35.90 Aligned_cols=108 Identities=8% Similarity=0.001 Sum_probs=71.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC----
Q 040279 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIG-LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG---- 147 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 147 (626)
.+..++-.-+..+...|.|+.|+-+.+.+.... ..|+..+-..-...+..++..+..++++..|...|++.++..
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 344566667788889999999998888765331 234432222222222235788999999999999999964321
Q ss_pred --------------------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 148 --------------------VRPDVITYGTLINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 148 --------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
...+...--.+..++.+.+++++|+.+++.+..
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 011123334577888899999999999998754
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.24 E-value=2.7 Score=41.24 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=65.0
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccccc--HH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPD-----VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTN--IF 194 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~ 194 (626)
.++..+...|++.+|..++.++...-...+ ...+...++.|...+++.+|..++.++........ .+++ ..
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~--~~~~lk~~ 219 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP--KYESLKLE 219 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS--CCHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC--CcHHHHHH
Confidence 456788889999999999999864311111 34566778889999999999999988743110000 1121 23
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.+...+..+...+++.+|-..|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455666777777888887777766643
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.22 E-value=0.41 Score=37.53 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=59.6
Q ss_pred CCChhhHHHHHHHHhhcC-CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 35 SSPETQLNEFLHENCKSG-IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
.+..++..++.-+++++. ..+..+++.+++.+...++.........|+-++.+.|+|++|+...+.+++. +|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 344455555555566554 1346778999999988776556677778889999999999999999999987 7876555
Q ss_pred HHH
Q 040279 114 NIL 116 (626)
Q Consensus 114 ~~l 116 (626)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.08 E-value=7.1 Score=38.20 Aligned_cols=189 Identities=11% Similarity=0.090 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 040279 347 LNVEEAMSLYRQIISN-----GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLC----KNN 417 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 417 (626)
+++++|++.+..+.+. ...........++..|...++++...+.+..+.+..-. -......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 5677777766555432 12223445566777777778877776666555432111 1122223333221 122
Q ss_pred CHHH--HHHHHHHHHH---CCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCCCCC---HhHHHHHHHHHH
Q 040279 418 CVQE--AVKLFHMLEM---NKFEF---GIEIFNCLIDGLCKAGRLDNAWELFHKLPQ--KGLVPT---VVTYSIMIHGLC 484 (626)
Q Consensus 418 ~~~~--A~~~~~~~~~---~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~ 484 (626)
..+. -..+.+.+.. ..+-. .......|...+...|++.+|..++..+.. .|..+. ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111110 00001 111223455555566666666666665543 111111 223444455555
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 485 RKGKLEKANDFLLYMEKN--GCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+++.+|..++.++... ...+++ ..+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 566666666655554321 011111 1233444445555555555555555543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.89 E-value=1 Score=46.94 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.|...|+++-|+++.++++. ..| +-.+|..|+.+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~----~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE----LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh----cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455666666666666665 555 3566666666666666666666666665
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.47 E-value=3.6 Score=32.31 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=28.9
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 471 PTVVTYSIMIHGLCRKGKL---EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|+..+-..+..++.++.+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444455544432 23444555554432111112223333345555555555555555555
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.44 E-value=1.8 Score=33.53 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=27.6
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 471 PTVVTYSIMIHGLCRKGKL---EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|+..+--.+..++++..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444432000122333333344455555555555555544
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.41 E-value=0.18 Score=39.02 Aligned_cols=77 Identities=10% Similarity=-0.064 Sum_probs=57.8
Q ss_pred hhHHHHHHHHhhcCC-CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 39 TQLNEFLHENCKSGI-INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
++..++.-+++++.. .+...++.+++.+.+.++......+..|+-++.+.|+|+.|+...+.+++. +|+..-...|-
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~Lk 118 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 445555555555542 246678999999988776446778888999999999999999999999977 78766555553
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.85 E-value=1.1 Score=46.65 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHhhH--HHHHHhhhhhhhhhhhcC-CHHHHHHHHHHHHHC------CC
Q 040279 79 NLLFGAVAKNRH-YDAVISFYRKLVSIGLLPDFLTL--NILINCFGNKERGLCVEN-RIKEATWLFKNMIAF------GV 148 (626)
Q Consensus 79 ~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~--~~ll~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~------~~ 148 (626)
..++..+...|+ ++.|+.+++++.+. .|....+ ..++. .+...+ +--+|.+++.+.++. ..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~-------~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l 322 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMIT-------ILDHIETKELDMITILNETLDPLLSLLNDL 322 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHH-------HHTTCGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHH-------HHHHhhhhhHHHHHHHHHHHHHhhhhhhhh
Confidence 344555555666 58899999999876 4543332 22221 111222 233555555554421 11
Q ss_pred CC-CH----------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHH
Q 040279 149 RP-DV----------ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFL 217 (626)
Q Consensus 149 ~~-~~----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (626)
++ +. ..+..-...+...|+++.|+++.++..... |.+..+|..|..+|...|+++.|+-.++
T Consensus 323 ~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 323 PPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 11 11 123333455667899999999999999875 7789999999999999999999999999
Q ss_pred HHh
Q 040279 218 EMK 220 (626)
Q Consensus 218 ~~~ 220 (626)
.++
T Consensus 396 ScP 398 (754)
T 4gns_B 396 SMP 398 (754)
T ss_dssp HSC
T ss_pred cCC
Confidence 876
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.48 E-value=4.8 Score=38.61 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc---CCCCCCCCHHHHHHHHH
Q 040279 477 SIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE---PERNLVPDDTTFSIVVD 553 (626)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~p~~~~~~~l~~ 553 (626)
..++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|++.|+...+ .+.|+.|+..+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344556667777777777777776653 55666777777777777777777777776532 12467777666544444
Q ss_pred HHH
Q 040279 554 LLA 556 (626)
Q Consensus 554 ~~~ 556 (626)
++.
T Consensus 254 il~ 256 (388)
T 2ff4_A 254 ILR 256 (388)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.77 E-value=1.1 Score=43.10 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhH
Q 040279 196 YSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD-----LGPRPNLLTF 266 (626)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 266 (626)
...++..+...|+++++...+..+.... +.+...|..++.++...|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445555666666666666666655543 44566666666666666666666666665532 4666665543
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.70 E-value=17 Score=34.64 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC--CCCCHhHH--
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG--VRPDVITY-- 155 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-- 155 (626)
.++..|...|+|.+|..++.++.+.=-..|. -..++..|..-++.|...+++.++...+....... +.+++...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 5788999999999999999888753112222 35566666666788999999999999998875431 22343332
Q ss_pred --HHHHHHHH-hcCChHHHHHHHHHHH
Q 040279 156 --GTLINGFC-RTGNLSVALRLHKKMV 179 (626)
Q Consensus 156 --~~li~~~~-~~g~~~~A~~~~~~~~ 179 (626)
..-+..+. ..++|..|...|-+..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22345556 7899999988887664
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.69 E-value=4 Score=29.64 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 383 QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+.-+..+-++.+...++.|++....+.+.+|.+.+++..|.++++.++.+- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444566666666667777777777777778877778888888777776432 223445665554
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.39 E-value=8.3 Score=43.18 Aligned_cols=51 Identities=6% Similarity=-0.059 Sum_probs=25.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
++..+...+..+.+.++...... +...--.+..++...|++++|.+.|++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33444445555554443332221 3333344455666667777777666553
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.52 E-value=34 Score=36.75 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=90.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDL--STYNILIDGLCKNNCVQEAVKLFHMLEMNKF-------EFGIEIFNCLIDG 447 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~ 447 (626)
+....|+.+++..+++.....+...+. ..-..+.-+....|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 445667777777777665532101222 2223333344455655567766655443211 0111112222222
Q ss_pred H--HHcCCHHHHHHHHHhcccCCCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHH
Q 040279 448 L--CKAGRLDNAWELFHKLPQKGLVPTVV----TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTL--MHGFL 519 (626)
Q Consensus 448 ~--~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~ 519 (626)
+ .-.++ +++...+..+... .+.. .-.+|...+.-.|+-+....++..+.+.. +......+ .-++.
T Consensus 463 la~~GS~~-eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHhcCCCC-HHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 2 22333 3444555544432 1211 11133334445677777777777666531 33333333 33445
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCCHHH----HHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPDDTT----FSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|+.+.+..+++.+.. ..++.. -..++-+|+..|+.....++++.+.
T Consensus 536 ~~g~~e~~~~li~~L~~-----~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-----SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 67787777777777765 122222 2244556777888666666777764
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.03 E-value=18 Score=33.09 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHH----HHHHHHHHCCCCCCH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEAT----WLFKNMIAFGVRPDV 152 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~----~~~~~~~~~~~~~~~ 152 (626)
.|.++..=|.+++++++|++++..-.. .+.+.|+...|. -+.+-..+.+.+++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~ 92 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL----------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD 92 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 344555566778888888887654331 122334433333 334555556777777
Q ss_pred hHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHH
Q 040279 153 ITYGTLINGFCRTGNLS-VALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFL 217 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (626)
.....++..+.....-+ .=.++.+++++-....+.....++.....+...|.+.|++.+|+.-|-
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 77777777765533211 112233333221100000023466777788888888888887776553
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.61 E-value=19 Score=32.93 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK---GKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
-++.....+...|.+.|++.+|...|-.-.. -|...+..++.-+... |...++--+..+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~----~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTH----DSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH----HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----ccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 3667778888888888888888887763221 1355555555544443 433332222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.+-.|.-.|+...|..++....
T Consensus 194 -aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 -LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCHHHHHHHHHHHH
Confidence 1223456677777777766654
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.22 E-value=7.4 Score=28.28 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555555555566666666666666666666666655544
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.19 E-value=16 Score=40.96 Aligned_cols=144 Identities=13% Similarity=0.019 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-----------------
Q 040279 408 ILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV----------------- 470 (626)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------- 470 (626)
.++..+.+.+..+.+..+..-. +.+...--.+..++...|++++|.++|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 3445555566666555543221 223333334556677777777777777765321 10
Q ss_pred ------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 040279 471 ------PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERN 540 (626)
Q Consensus 471 ------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 540 (626)
.-..-|..++..+.+.|.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---- 966 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---- 966 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH----
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC----
Confidence 01234667778888899999999888887765322222 2577888899999999999998888766
Q ss_pred CCCCHHHHHHHHHHHHccCCH
Q 040279 541 LVPDDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 541 ~~p~~~~~~~l~~~~~~~g~~ 561 (626)
..--...+..++..+...|+.
T Consensus 967 ~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 967 TPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCh
Confidence 222355666666655544443
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.46 E-value=8 Score=29.85 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 383 QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+.-+..+-++.+...++.|++......+.+|.+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344566666777777788888888888888888888888888888777443 233556666654
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.21 E-value=26 Score=32.35 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG 487 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 487 (626)
-++.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 466677777888888888888888773 2 22233456655555554443
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.92 E-value=49 Score=33.85 Aligned_cols=203 Identities=11% Similarity=-0.031 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYC----KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYA 387 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 387 (626)
.+.+.|...+....... ..+......+-..+. ..+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47899999998887653 224333333333332 3343556677777655442 3443344445555677999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (626)
...|+.|.... .......--+..++...|+.++|..+|+.+... . ..|..+. ..+.|..-.. ...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~Lg~~~~~-----~~~-- 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRIGEEYEL-----KID-- 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHTTCCCCC-----CCC--
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHcCCCCCC-----CCC--
Confidence 99999886532 123333444566778899999999999988742 1 2343332 2233321000 000
Q ss_pred CCCCC---H---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 468 GLVPT---V---VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 468 ~~~p~---~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
...+. . ..-...+..+...|....|...+..+.+. .+......+.......|.++.++.......
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~ 440 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 01110 0 01122345577789999999888888764 233334455555567777877776655443
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.35 E-value=14 Score=26.70 Aligned_cols=84 Identities=11% Similarity=0.016 Sum_probs=55.0
Q ss_pred hhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhh
Q 040279 49 CKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLC 128 (626)
Q Consensus 49 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~ 128 (626)
.-.|.+..++|..+-+.....+. ...+--.-+..+..+|+|++|..+.+... .||...|..+- -.
T Consensus 16 ~gTG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc---------e~ 80 (116)
T 2p58_C 16 IGTGNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC---------EY 80 (116)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH---------HH
T ss_pred HHccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH---------HH
Confidence 34566678888888777655433 22222233345668899998888776655 68877777663 34
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 040279 129 VENRIKEATWLFKNMIAFG 147 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~ 147 (626)
+.|-.+++...+.++...|
T Consensus 81 rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 81 RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTCHHHHHHHHHHHTTCC
T ss_pred hcccHHHHHHHHHHHHhCC
Confidence 5677777777777776665
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.20 E-value=37 Score=31.34 Aligned_cols=82 Identities=7% Similarity=0.013 Sum_probs=49.0
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
-|+.....+...|.+.+++.+|...|- .|-.+....+..++.-+...+...++--++-++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa---------------- 193 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCARA---------------- 193 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHHH----------------
Confidence 467777888899999999999888773 232333456655555554443322222222221
Q ss_pred HHHHHHccCCHhHHHHHHHHHHh
Q 040279 551 VVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+--|.-.|+...|...++....
T Consensus 194 -VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 -VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCHHHHHHHHHHHHH
Confidence 2235566788888887766543
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.08 E-value=13 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 419 VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
.-+..+-++.+...+..|++.+....+.+|.+.+++..|.++|+-+..
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555555556666666666666666666666666665554
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.82 E-value=13 Score=26.77 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=54.3
Q ss_pred hhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhh
Q 040279 49 CKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLC 128 (626)
Q Consensus 49 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~ 128 (626)
.-+|.+..++|..+-+.....+. ...+--.-+..+..+|+|++|..+.+... .||...+..+- -.
T Consensus 15 ~gTG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc---------e~ 79 (115)
T 2uwj_G 15 AGSGQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC---------EW 79 (115)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH---------HH
T ss_pred HHccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH---------HH
Confidence 34566678888888777655433 22222233345668888888887776554 67777777663 34
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 040279 129 VENRIKEATWLFKNMIAFG 147 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~ 147 (626)
+.|-.+++...+.++...|
T Consensus 80 rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HTTCHHHHHHHHHHHHTCS
T ss_pred hcccHHHHHHHHHHHHhCC
Confidence 6677777777777777665
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.27 E-value=9.9 Score=33.65 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=49.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.+.+.|++++|+.....-++.. +-|...-..|+..+|-.|++++|.+-++...+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4567899999999999988875 5688888899999999999999999999988765
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.10 E-value=33 Score=28.77 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
.++..++.++|..|..+|+--.. ..|......+...|++.+|.++|+..++ .+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~--~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE--NNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcc
Confidence 34466777777777777655443 3556666667777777788777777777 55566
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.31 E-value=21 Score=25.85 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFL 496 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (626)
...++|..+-+-+...+. ...+-..-+..+.+.|++++|..+.+... .||...|.+|. -.+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 356777777776665542 22222223445678899999988877765 47888887654 45778888888888
Q ss_pred HHHHHCCCCCCHHHHH
Q 040279 497 LYMEKNGCAPNVVTFN 512 (626)
Q Consensus 497 ~~~~~~~~~p~~~~~~ 512 (626)
.++..+| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7888776 45444443
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.02 E-value=78 Score=32.35 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILID----GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (626)
.+.+.|...+....+.. ..+......+-. .....+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777765422 122222222222 2223342445555555544332 2333344444445567888888
Q ss_pred HHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCC-------C---HH-----H
Q 040279 458 WELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN------------GCAP-------N---VV-----T 510 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~p-------~---~~-----~ 510 (626)
...|+.|..... .......-+.+++...|+.++|..+|..+.+. |.++ + .. .
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 888887765311 12333445566777778888888877776531 2111 0 00 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHH
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
-...+..+...|....|...+..+.+ ..+......+.......|.++.++....
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~-----~~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVK-----SKSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 11234456778888999888888876 1234444455556667777777765543
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.61 E-value=22 Score=25.78 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFL 496 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (626)
...++|..+-+-+...+. ...+-..-+..+.+.|++++|..+.+... .||...|.+|. -.+.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 356677777666665542 22222222345678888888888888776 47888877654 34678778888777
Q ss_pred HHHHHCCCCCCHHHHH
Q 040279 497 LYMEKNGCAPNVVTFN 512 (626)
Q Consensus 497 ~~~~~~~~~p~~~~~~ 512 (626)
.++..+| .|....|.
T Consensus 93 ~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHTTCC-CHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7777766 44444443
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.42 E-value=99 Score=33.29 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLV 102 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (626)
|...+++..+.++.+.+.++|.++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445556666677777777777765
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.90 E-value=40 Score=28.46 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
+..+-...+.++.+.+. .++...+..+.
T Consensus 156 ~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 44444444444444443 23333333333
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.90 E-value=12 Score=33.20 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=77.9
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 446 DGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS 525 (626)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (626)
....+.|++++|++....-++.. +-|...-..++..++-.|+++.|.+-++...+. .|+...-..+.+...+.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHHHH
Confidence 34567899999999998888763 447778888999999999999999999999884 565443332323332221111
Q ss_pred HHHHHHHHhhcCCCCC-CCCHHHHHHHHHHHH--ccCCHhHHHHHHHHHHh
Q 040279 526 KVVELLHKMAEPERNL-VPDDTTFSIVVDLLA--KDEKYHECSAVSKSSYR 573 (626)
Q Consensus 526 ~a~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 573 (626)
+ ++|..-.. .++ .....-...++.++. ..|+.++|.++-.++..
T Consensus 82 ~--~vfaG~~~--P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 82 K--DFAQGAAT--AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp H--HHTTSCCC--EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H--HHHcCCCC--CCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1 11111111 111 123445556666644 57999999999999864
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.82 E-value=28 Score=33.81 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 265 TFNVMIDCLCKGGKINEANGLLELMIQRG--LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMH 325 (626)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 325 (626)
+...+...|.+.|++++|.+.+.++...- ...-...+-..+..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555555555555555544431 11122334444455555555555555555443
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.74 E-value=63 Score=30.72 Aligned_cols=166 Identities=11% Similarity=-0.047 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC---CHhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCChhhH-
Q 040279 263 LLTFNVMIDCLCKGGKINEANGLLELMIQR-GLNP---DRFTYNSLMDGYCLVG-RIDTAREIFLSMHSKGCKHTVVSY- 336 (626)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~- 336 (626)
..+...+...|.+.|+.++...++...... +.-+ .......+++.+.... ..+.-.++..+..+..-. ...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345666778888888888888777765432 1111 2233455666655532 333334444444332100 12222
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHH
Q 040279 337 -----NILINGYCKILNVEEAMSLYRQIISNGVRQTV-----ITYNTLLSGLFQAGQAGYAQKLFDEMKLY--NVEPDLS 404 (626)
Q Consensus 337 -----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 404 (626)
..++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...++..++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 14566667777777777777666653111111 22333445566667777776666665431 1222322
Q ss_pred HHHHH----HHHHH-hcCCHHHHHHHHHHH
Q 040279 405 TYNIL----IDGLC-KNNCVQEAVKLFHML 429 (626)
Q Consensus 405 ~~~~l----~~~~~-~~g~~~~A~~~~~~~ 429 (626)
....+ ...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22111 12234 566666666665433
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.23 E-value=43 Score=32.47 Aligned_cols=100 Identities=11% Similarity=-0.072 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC-CCCCHhH
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG-VRPDVIT 154 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 154 (626)
.++..++..+.+.|+++.|...|.++...-..++. .....+. .++.+...+++..+...++++...- -.++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-kid~~l~----~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-KIDVMLT----IARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-HHHHHHH----HHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-HHHHHHH----HHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence 35666777777777777777777777654222222 1222222 1345566777777777777764321 1122222
Q ss_pred HH----HHHHHHHhcCChHHHHHHHHHHHh
Q 040279 155 YG----TLINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 155 ~~----~li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
.+ .-+..+...+++..|...|-....
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 21 122233456777777777666544
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.93 E-value=39 Score=28.39 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 452 GRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
+....+..+|..|...|+--. ...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566677777666555433 4455566666667777777777777777665555
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.24 E-value=93 Score=27.35 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=7.3
Q ss_pred HHHcCCHHHHHHHHH
Q 040279 448 LCKAGRLDNAWELFH 462 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~ 462 (626)
.+..|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344555554444444
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.11 E-value=75 Score=31.36 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=37.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDF-LTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF 146 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 146 (626)
...+|.+++.|...+.++.|..+..+.. .|.. ..-+....-+--+++.+..++++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3456677777777777777777777664 2221 111111111112345666677777777777766654
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.55 E-value=77 Score=25.22 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 492 ANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
+.++|..|..+|+--.. ..|......+...|++++|.++|+..++ .+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~--~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ--NQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcc
Confidence 66666666666554433 3445555566666777777777766666 55555
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.71 E-value=77 Score=25.21 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 456 NAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
.+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36777777777665533 455667777777888888888888888877666643
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.29 E-value=96 Score=25.67 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=23.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
+...-...+.++...++. ++...+..+.+ .++..+-...+.++.+.|. .++...+..+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 443334444444444432 23333333332 2344444444444444443 23344444443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.25 E-value=96 Score=25.05 Aligned_cols=53 Identities=9% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 491 KANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
...++|..|..+|+-... ..|......+...|++.+|.++|+..++ .+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~--~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ--QKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHH
Confidence 366677788777665543 3556666677777888888888888877 6666643
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.16 E-value=1.1e+02 Score=26.77 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=10.0
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHK 176 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~ 176 (626)
.+...++.|+++....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444556666655544444
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.10 E-value=1e+02 Score=24.84 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 456 NAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
.+..+|..|...|+-.. ...|...+..+...|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35566777766655433 445666666777778888888888877777666644
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.48 E-value=76 Score=25.53 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHhHhcCCCC--CHhhHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSP--PISSFNLLFG-A-----VAKNRHYDAVISFYRKLVS 103 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 103 (626)
|++-+|-++|+......+.+ ....|..||+ + ..+.|++..|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 59999999999998876666 5567777777 2 3478999999999998864
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.31 E-value=1.3e+02 Score=25.11 Aligned_cols=122 Identities=13% Similarity=-0.064 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...-...+.++...+..+ +...+..+.. .++..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 3434444444444444432 2222223322 345555555555666655543 2233333332 345555556666
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
++...|+.+ +...+..+.+ .++...-...+.++...+. .++...+..+.+
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 666666543 3444444443 2455555566666666665 445555555554
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.70 E-value=98 Score=26.29 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcc--hHHHHHHHHHhcCCHHHHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVV--VCTTLIHGFCCAGNWEEVNGL 250 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~ 250 (626)
.++.|+.+....+ .+.|..++.. .-.+.+...+..|+.+-+..+
T Consensus 16 A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 16 ATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 4455665444333 3344333221 112344455566665544333
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.06 E-value=1.8e+02 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQI 359 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (626)
.......+..+.+.|+.++|.++|=+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 334444455555566666666555443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.73 E-value=1.2e+02 Score=26.32 Aligned_cols=22 Identities=23% Similarity=0.048 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
-++.+....++++|..++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3555666666666666665544
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.27 E-value=1.2e+02 Score=25.96 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 490 EKANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
+....+|..|..+|+--.. ..|......+...|++.+|.++|+..++ .+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~--~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR--MKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcc
Confidence 4667788888887765553 4566667777788888888888888887 55566
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.53 E-value=51 Score=28.85 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=32.1
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcch-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVV-------CTTLIHGFC--CAGNWEEVNGLFIEM 254 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~~ 254 (626)
+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4455677888888888887776665544332 233333321 456666666665554
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.00 E-value=1.4e+02 Score=25.16 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=19.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHH
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLL--TFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~ 285 (626)
.++.|+.+....++ +.|..++.. .-...+...+..|+.+-+..+
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 45566655544444 333332221 111234445566665544333
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.99 E-value=1.5e+02 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
..++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555566666666666666665
No 293
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=34.72 E-value=25 Score=24.53 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=11.6
Q ss_pred HHccCCHhHHHHHHHHHHh
Q 040279 555 LAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~~ 573 (626)
+.+.|++++|..+|+...+
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4556666666666666543
No 294
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.51 E-value=1.7e+02 Score=24.71 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCCCcCHH-------HHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 040279 419 VQEAVKLFHMLEMNKFEFGIE-------IFNCLIDGLCKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (626)
++.|+.+|+.+.+...-++.. +-...+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456667776666432111110 1123445677888888888888887764
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.04 E-value=2.2e+02 Score=24.15 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 133 IKEATWLFKNMIAFGVRPDVI-------TYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
++.|+.+|+.+.+...-++.. .-...+..|.+.|.+++|.+++++....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 577888888887653111111 12245678889999999999999998754
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.38 E-value=2e+02 Score=23.49 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=8.0
Q ss_pred HHhcCCcchHHHHHH
Q 040279 203 LCKEGLVDKAKELFL 217 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~ 217 (626)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345566655555543
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.96 E-value=2.7e+02 Score=30.26 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
-|..++..|-+.+.++.++++-+.+++.-
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 46677888888888888888888887643
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.54 E-value=1.2e+02 Score=24.20 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34555566666666666666665
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.31 E-value=5.4e+02 Score=27.94 Aligned_cols=133 Identities=9% Similarity=-0.013 Sum_probs=66.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK 488 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 488 (626)
++..|...|..+-|.++..-+ +.++..--.+..+|...|++++|..+|+++.. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 455566666666555433211 22333333456667777888888888877653 22211110000
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHHHccC
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLLAKDE 559 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 559 (626)
......++... +. ......-|..++..+.+.+-++.+.++.+.+++....-.|+ ...|..+.++....|
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00000011000 00 01112367788888888888888888888888611111111 234667776665554
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.08 E-value=2.5e+02 Score=23.67 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=23.4
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcch--HHHHHHHHHhcCCHH
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVV--CTTLIHGFCCAGNWE 245 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 245 (626)
+...++.|+.+....+++.+.+.|..++... ..+.+...+..|+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 60 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH
Confidence 3445566777766666666555544433221 122344444556554
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.99 E-value=57 Score=20.92 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 245 EEVNGLFIEMLDLGPRPNLLTFNVMIDCL 273 (626)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (626)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665543333455666666655
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.66 E-value=2.1e+02 Score=24.44 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=33.8
Q ss_pred HHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 455 DNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
+.+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455566776666655433 4456666666777777777777777777665555
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.52 E-value=2.3e+02 Score=23.08 Aligned_cols=17 Identities=0% Similarity=-0.050 Sum_probs=10.4
Q ss_pred HHHhcCChHHHHHHHHH
Q 040279 161 GFCRTGNLSVALRLHKK 177 (626)
Q Consensus 161 ~~~~~g~~~~A~~~~~~ 177 (626)
..+..|+.+....+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 11 EAANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHHTTCHHHHHHHHTC
T ss_pred HHHHhccHHHHHHHHHc
Confidence 34566777766666653
No 304
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=26.91 E-value=3.2e+02 Score=23.96 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=13.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (626)
..-+.+++++....++.+.+.+...+..--+
T Consensus 40 LaeqaeRYddMv~~MK~v~~~~~eLt~EERN 70 (261)
T 3ubw_A 40 LAEQAERYDEMVESMKKVAGMDVELTVEERN 70 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCcCCHHHHH
Confidence 3344444444444444444443333333333
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.61 E-value=4.5e+02 Score=25.52 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=89.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDF 495 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 495 (626)
..+.+-|.++-. +.+.+--...|..-.+.+...|++++|-++--.... |+--+..|.+.+-.+-...|...--+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 356666655543 445555555666667778888888888888776654 3444677766555544455677777888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
|..+.+.| ..+..--..+.+.-...|+.+-..+.+++- .+..+.+.= +.. +..+..-|..+|.++
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~-----KL~~SEeLG----Dlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED-----KLECSEELG----DLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----CSCCCHHHH----HHH-HHHCSHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC-----CccccHHhH----hhh-hhcCHHHHHHHHHHc
Confidence 88888876 566655555666666777776665555543 245544332 222 444677888888877
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.78 E-value=3e+02 Score=24.26 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=5.2
Q ss_pred HHHHHHhcCCHH
Q 040279 234 LIHGFCCAGNWE 245 (626)
Q Consensus 234 li~~~~~~~~~~ 245 (626)
.+...+..|+.+
T Consensus 65 ~L~~A~~~g~~~ 76 (285)
T 3kea_A 65 PLHQAATLEDTK 76 (285)
T ss_dssp HHHHHTTSSSCH
T ss_pred HHHHHHHcCCHH
Confidence 333344455543
No 307
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.76 E-value=4.6e+02 Score=25.31 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHhhHHHHHHHHHh
Q 040279 243 NWEEVNGLFIEMLD--------LGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL----NPDRFTYNSLMDGYCL 310 (626)
Q Consensus 243 ~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~ 310 (626)
..++...+++.... .++..+......++.. ..|+..+++.+++.+..... .....+...+-....+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-----hHHHHHHHHHHHH
Q 040279 311 V------------------------GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN-----VEEAMSLYRQIIS 361 (626)
Q Consensus 311 ~------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~ 361 (626)
. ++.+.|+.++.+|.+.|..|....-..+..+.-..|. ..-|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040279 362 NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL 396 (626)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (626)
.|.+--.......+-.++..-+...+...++...+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.22 E-value=2.5e+02 Score=22.08 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=17.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040279 270 IDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 311 (626)
+..+...+..-.|.++++.+.+.+...+..|....++.+...
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 333333333444455555554443333443333333333333
No 309
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.20 E-value=4.4e+02 Score=24.54 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~ 395 (626)
..++.-|...++.++|...++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 344555555555555555555553
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.19 E-value=2.4e+02 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhc
Q 040279 443 CLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444455555555555554
No 311
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=23.76 E-value=1.4e+02 Score=18.79 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=24.0
Q ss_pred HhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 040279 48 NCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVI 95 (626)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 95 (626)
+.-.|.+..++|..+-+.+...+.. ...+--..+..+..+|+|++|+
T Consensus 14 L~~TG~HcH~EA~tIA~~L~~~~~~-eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 14 LAGTGHHCHQEAASIADWLAQEECM-AECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSSTT-HHHHHHHHHHHHHHC-------
T ss_pred HHHccchHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHccchHhHhh
Confidence 3455667889998888877554433 2222223345567889998875
No 312
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.60 E-value=3.7e+02 Score=23.43 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=8.8
Q ss_pred hcCCHHHHHHHHHHh
Q 040279 520 QNNKTSKVVELLHKM 534 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~ 534 (626)
-.+++++|..+.+++
T Consensus 186 Iln~~~~Ac~lAk~A 200 (248)
T 3uzd_A 186 IQNAPEQACHLAKTA 200 (248)
T ss_dssp TSCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 356666666655554
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.50 E-value=1e+02 Score=26.84 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=31.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccc-cccHHHHHHHHHHHH--hcCCcchHHHHHHHHh
Q 040279 159 INGFCRTGNLSVALRLHKKMVSGDYENGLIS-KTNIFSYSIIIDSLC--KEGLVDKAKELFLEMK 220 (626)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 220 (626)
+...++.|+.+....+++.+.+.+....... ..+..-.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4455677888887777776665442111000 000112223333322 5677777776666543
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.15 E-value=2.4e+02 Score=21.94 Aligned_cols=35 Identities=9% Similarity=-0.093 Sum_probs=14.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 276 GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 276 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
.+..-.|.++++.+.+.+...+..|...-++.+..
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 33334444444444444333333333333333333
No 315
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.15 E-value=3.1e+02 Score=22.39 Aligned_cols=106 Identities=10% Similarity=-0.099 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHH
Q 040279 401 PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMI 480 (626)
Q Consensus 401 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 480 (626)
++...-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++. .+...+..+.. .++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 455555555666666665432 222323322 34555555666666666653 33444444443 24555556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 481 HGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.++...|. .++...+..+.+. ++...-.....++
T Consensus 160 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL 193 (201)
T 3ltj_A 160 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYL 193 (201)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 66666665 4455555555542 3444433333333
No 316
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.31 E-value=95 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=10.7
Q ss_pred HHccCCHhHHHHHHHHHH
Q 040279 555 LAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~ 572 (626)
+.+.|++++|..+|+...
T Consensus 29 ~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 345666666666666554
No 317
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.93 E-value=1e+02 Score=22.02 Aligned_cols=48 Identities=6% Similarity=-0.170 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHH-----HhcCChhHHHHHHHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAV-----AKNRHYDAVISFYRKLVS 103 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~ 103 (626)
|++-+|-++++......+.+....|..+|+.. .+.|+. |..++.+...
T Consensus 15 g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 49999999999998876555556677666543 267777 7777777654
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.76 E-value=2.3e+02 Score=22.12 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (626)
++-+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 5 ~~~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp THHHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.69 E-value=1.6e+02 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcC
Q 040279 269 MIDCLCKGGKINEANGLLELMIQR--GLNPDRFTYNSLMDGYCLVG 312 (626)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g 312 (626)
++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444455555554444 33333333333334444333
No 320
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.54 E-value=3.3e+02 Score=22.13 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHH----HHHHHHH
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNL-LTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYN----SLMDGYC 309 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~ 309 (626)
+...++.|+.+. +..+...++.... ..-.+.+...+..|+.+.-.++.+.+++.|..++...-. ..+.+..
T Consensus 10 l~~Aa~~g~~~~----~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 10 VSAAAMLGTYED----FLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHHSCHHH----HHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCh--hhHHHHHHHHHHcC
Q 040279 310 LVGRIDTAREIFLSMHSKGCKHTVVSY----NILINGYCKILNVEEAMSLYRQIIS-NGVRQTV--ITYNTLLSGLFQAG 382 (626)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~--~~~~~l~~~~~~~~ 382 (626)
...+.....++.+.+.+.|..++.... +.+..+.........-..+++.+.+ .|..++. ..-.+-+....+.|
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHHHHHhCCCCCCH
Q 040279 383 QAGYAQKLFDEMKLYNVEPDL 403 (626)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~ 403 (626)
..+.+.-+.+...+.+++.+.
T Consensus 166 ~~~~v~~L~~~~~~~~~~~~~ 186 (186)
T 3t8k_A 166 KPIALKMMEDYIKKYNLKENS 186 (186)
T ss_dssp CHHHHHHHHHHHHHHTCCC--
T ss_pred CHHHHHHHHHHHHHHhcccCC
No 321
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.28 E-value=1.6e+02 Score=20.90 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLV 102 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (626)
.+......+.+.|+|++|++..++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45567778889999999998887664
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.27 E-value=2.1e+02 Score=22.66 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhc
Q 040279 443 CLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555555544
No 323
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.13 E-value=3.7e+02 Score=22.50 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----hHHHHHHHHHHHhCCCCCCcccc
Q 040279 116 LINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGN-----LSVALRLHKKMVSGDYENGLISK 190 (626)
Q Consensus 116 ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~ 190 (626)
+|+++ .--.+..+.+.|+-++.+|++.| .|.-..-..++.+.-.-|. ...|...++.....| .|
T Consensus 17 ~iSAf----~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG------~P 85 (204)
T 2r9g_A 17 VISAF----QKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG------LP 85 (204)
T ss_dssp HHHHH----HHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC------TT
T ss_pred HHHHH----HHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC------CC
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 191 TNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.-.......+-.++..-+-..+...++...+
T Consensus 86 E~~i~LaqaviyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 86 EARIPLADVVVDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp TTHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
No 324
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.05 E-value=3.6e+02 Score=22.45 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=36.7
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----hHHHHHHHHHHHhCC
Q 040279 128 CVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGN-----LSVALRLHKKMVSGD 182 (626)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~ 182 (626)
.+..+.+.|+-++.+|++.|..|.-..-..++.+.-.-|. ...|...++.....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 4567899999999999999866655555555555554442 334555566655555
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.88 E-value=3.1e+02 Score=21.52 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040279 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347 (626)
Q Consensus 288 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (626)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555554433 23344444455556666667766666554445555444445444444
No 326
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.71 E-value=3.8e+02 Score=22.58 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=44.8
Q ss_pred hhHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 76 SSFNLLFGAVA---KNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 76 ~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
....-+++++. |..+.+.|+..+-+|++.|-.|.......++-+.--+ ++..-.-...|...++.....|.+--
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDI--GlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDI--GLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT--GGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 44555666665 5688999999999999988777655555444333221 22223334556666666666675433
Done!