BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040280
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 89 LMHFNLSFNLFFGIIPPQVGXXXXXXXXXXXXXXXKYLSTLDLSQNQLSGSI--XXXXXX 146
L +LSFN F G +P + L TLDLS N SG I
Sbjct: 342 LKVLDLSFNEFSGELPESL------------TNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Query: 147 XXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSD 206
G IP + N L+ L LS N L+G+IP S G+L+ L + L+ +
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 207 SLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265
L G IP L +K+L TL L N L G I ++N ++L + L NN L G +P+ IG
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 82 AFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXXXXXXXXKYLSTLDLSQNQLSGSIX 141
S+ L+ +LSFN G IP +G L L L N L G I
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-------------LRDLKLWLNMLEGEIP 456
Query: 142 XXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMM 201
G IPS + N +L + LS N+L G IP G L NL ++
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 202 SLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSI--------AN-LSSLRTLFLY 252
L ++S SG+IP LG+ +SL L L+ N NG I ++ AN ++ R +++
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 253 NNGL 256
N+G+
Sbjct: 577 NDGM 580
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 60/101 (59%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
G N S++ LD+S N L+G IP G++ L +++L + +SGSIP +G+L+
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262
L+ L L N+L+G I +++ L+ L + L NN L G +PE
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
G+IPS +G+ L L L N L G IP + L + L + L+G IP L N +
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCC 267
L+ + L N+L G I I L +L L L NN G +P E+G C
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 14/202 (6%)
Query: 64 VISIDLSSMGLNGA-LQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXXXXXXX 122
++++DLSS +G L + L L N F G IPP +
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-------------SN 413
Query: 123 XKYLSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSEN 182
L +L LS N LSG+I G IP + K+L L L N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 183 QLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIAN 242
L G IP N NL +SL ++ L+G IP +G L++L+ L+L N +G I + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 243 LSSLRTLFLYNNGLYGFVPEEI 264
SL L L N G +P +
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAM 555
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
G IP IG+ L L+L N ++GSIP G+L L ++ L S+ L G IP + L
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 222 LSTLRLHINQLNGVISPSIANLSSL-RTLFLYNNGLYGF 259
L+ + L N L+G I P + + FL N GL G+
Sbjct: 703 LTEIDLSNNNLSGPI-PEMGQFETFPPAKFLNNPGLCGY 740
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 47/156 (30%)
Query: 58 CNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXX 117
CN RV G F + +M ++S+N+ G IP ++G
Sbjct: 610 CNITSRVY----------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG--------- 650
Query: 118 XXXXXXKYLSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRL 177
YL L+L N +S GSIP +G+ + L L
Sbjct: 651 ----SMPYLFILNLGHNDIS------------------------GSIPDEVGDLRGLNIL 682
Query: 178 DLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP 213
DLS N+L+G IP + L LT + L +++LSG IP
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 89/230 (38%), Gaps = 69/230 (30%)
Query: 67 IDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXXXXXXXXKYL 126
+D+S L+G + A S+ L N+S N F G IPP K L
Sbjct: 225 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPP---------------LPLKSL 268
Query: 127 STLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSII-GNFKSLLRLDLSENQLN 185
L L++N+ +G I P + G +L LDLS N
Sbjct: 269 QYLSLAENKFTGEI------------------------PDFLSGACDTLTGLDLSGNHFY 304
Query: 186 GSIPLSFG-------------------------NLNNLTMMSLFSDSLSGSIPPNLGNL- 219
G++P FG + L ++ L + SG +P +L NL
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 220 KSLSTLRLHINQLNGVISPSIAN--LSSLRTLFLYNNGLYGFVPEEIGCC 267
SL TL L N +G I P++ ++L+ L+L NNG G +P + C
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 414
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+G+ +L LD+S N+L+G + L ++++ S+ G IPP LKSL L L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 273
Query: 228 HINQLNGVISPSIAN-LSSLRTLFLYNNGLYGFVPEEIG 265
N+ G I ++ +L L L N YG VP G
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 126 LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLN 185
L+ + LS N+L+G I G+IP+ +G+ +SL+ LDL+ N N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 186 GSIPLSF------------------------------GNLNNLTMMSLFSDSLS------ 209
G+IP + G N L + S+ L+
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 210 ----------GSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGF 259
G P N S+ L + N L+G I I ++ L L L +N + G
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 260 VPEEIG 265
+P+E+G
Sbjct: 669 IPDEVG 674
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 191 SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLF 250
+F N ++ + + + LSG IP +G++ L L L N ++G I + +L L L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 251 LYNNGLYGFVPEEI 264
L +N L G +P+ +
Sbjct: 684 LSSNKLDGRIPQAM 697
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 110/292 (37%), Gaps = 76/292 (26%)
Query: 7 KEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCNQVGRVIS 66
+E L+ +K L +KN LL W+ +PC + G++C +V S
Sbjct: 9 REIHQLISFKDVLPDKN--LLPDWS--------------SNKNPCTFDGVTCRD-DKVTS 51
Query: 67 IDLSSMGLNGALQKFAFSS---------FPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXX 117
IDLSS LN + S F H N S + F
Sbjct: 52 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF------------------ 93
Query: 118 XXXXXXKYLSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSII-GNFK--SL 174
L++LDLS+N LSG + P + G K SL
Sbjct: 94 ---KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 150
Query: 175 LRLDLSENQLNGSIPLSF--------------------GNLN-----NLTMMSLFSDSLS 209
LDLS N ++G+ + + G+++ NL + + S++ S
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 210 GSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
IP LG+ +L L + N+L+G S +I+ + L+ L + +N G +P
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 89 LMHFNLSFNLFFGIIPPQVGXXXXXXXXXXXXXXXKYLSTLDLSQNQLSGSI--XXXXXX 146
L +LSFN F G +P + L TLDLS N SG I
Sbjct: 345 LKVLDLSFNEFSGELPESL------------TNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 147 XXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSD 206
G IP + N L+ L LS N L+G+IP S G+L+ L + L+ +
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 207 SLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265
L G IP L +K+L TL L N L G I ++N ++L + L NN L G +P+ IG
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 82 AFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXXXXXXXXKYLSTLDLSQNQLSGSIX 141
S+ L+ +LSFN G IP +G L L L N L G I
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-------------LRDLKLWLNMLEGEIP 459
Query: 142 XXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMM 201
G IPS + N +L + LS N+L G IP G L NL ++
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 202 SLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSI--------AN-LSSLRTLFLY 252
L ++S SG+IP LG+ +SL L L+ N NG I ++ AN ++ R +++
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 253 NNGL 256
N+G+
Sbjct: 580 NDGM 583
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%)
Query: 170 NFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHI 229
N S++ LD+S N L+G IP G++ L +++L + +SGSIP +G+L+ L+ L L
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 230 NQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262
N+L+G I +++ L+ L + L NN L G +PE
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
G+IPS +G+ L L L N L G IP + L + L + L+G IP L N +
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCC 267
L+ + L N+L G I I L +L L L NN G +P E+G C
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 85/207 (41%), Gaps = 14/207 (6%)
Query: 59 NQVGRVISIDLSSMGLNGA-LQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXX 117
N ++++DLSS +G L + L L N F G IPP +
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL---------- 414
Query: 118 XXXXXXKYLSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRL 177
L +L LS N LSG+I G IP + K+L L
Sbjct: 415 ---SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 178 DLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVIS 237
L N L G IP N NL +SL ++ L+G IP +G L++L+ L+L N +G I
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 238 PSIANLSSLRTLFLYNNGLYGFVPEEI 264
+ + SL L L N G +P +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
G IP IG+ L L+L N ++GSIP G+L L ++ L S+ L G IP + L
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 222 LSTLRLHINQLNGVISPSIANLSSL-RTLFLYNNGLYGF 259
L+ + L N L+G I P + + FL N GL G+
Sbjct: 706 LTEIDLSNNNLSGPI-PEMGQFETFPPAKFLNNPGLCGY 743
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 47/156 (30%)
Query: 58 CNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXX 117
CN RV G F + +M ++S+N+ G IP ++G
Sbjct: 613 CNITSRVY----------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG--------- 653
Query: 118 XXXXXXKYLSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRL 177
YL L+L N +S GSIP +G+ + L L
Sbjct: 654 ----SMPYLFILNLGHNDIS------------------------GSIPDEVGDLRGLNIL 685
Query: 178 DLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP 213
DLS N+L+G IP + L LT + L +++LSG IP
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 89/230 (38%), Gaps = 69/230 (30%)
Query: 67 IDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXXXXXXXXKYL 126
+D+S L+G + A S+ L N+S N F G IPP K L
Sbjct: 228 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPP---------------LPLKSL 271
Query: 127 STLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSII-GNFKSLLRLDLSENQLN 185
L L++N+ +G I P + G +L LDLS N
Sbjct: 272 QYLSLAENKFTGEI------------------------PDFLSGACDTLTGLDLSGNHFY 307
Query: 186 GSIPLSFG-------------------------NLNNLTMMSLFSDSLSGSIPPNLGNL- 219
G++P FG + L ++ L + SG +P +L NL
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 220 KSLSTLRLHINQLNGVISPSIAN--LSSLRTLFLYNNGLYGFVPEEIGCC 267
SL TL L N +G I P++ ++L+ L+L NNG G +P + C
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+G+ +L LD+S N+L+G + L ++++ S+ G IPP LKSL L L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 276
Query: 228 HINQLNGVISPSIAN-LSSLRTLFLYNNGLYGFVPEEIG 265
N+ G I ++ +L L L N YG VP G
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 126 LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLN 185
L+ + LS N+L+G I G+IP+ +G+ +SL+ LDL+ N N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 186 GSIPLSF------------------------------GNLNNLTMMSLFSDSLS------ 209
G+IP + G N L + S+ L+
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 210 ----------GSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGF 259
G P N S+ L + N L+G I I ++ L L L +N + G
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 260 VPEEIG 265
+P+E+G
Sbjct: 672 IPDEVG 677
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 191 SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLF 250
+F N ++ + + + LSG IP +G++ L L L N ++G I + +L L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 251 LYNNGLYGFVPEEI 264
L +N L G +P+ +
Sbjct: 687 LSSNKLDGRIPQAM 700
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 111/292 (38%), Gaps = 76/292 (26%)
Query: 7 KEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCNQVGRVIS 66
+E L+ +K L +KN LL W+ + + PC + G++C +V S
Sbjct: 12 REIHQLISFKDVLPDKN--LLPDWSSNKN--------------PCTFDGVTCRD-DKVTS 54
Query: 67 IDLSSMGLNGALQKFAFSS---------FPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXX 117
IDLSS LN + S F H N S + F
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF------------------ 96
Query: 118 XXXXXXKYLSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSII-GNFK--SL 174
L++LDLS+N LSG + P + G K SL
Sbjct: 97 ---KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153
Query: 175 LRLDLSENQLNGSIPLSF--------------------GNLN-----NLTMMSLFSDSLS 209
LDLS N ++G+ + + G+++ NL + + S++ S
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 210 GSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
IP LG+ +L L + N+L+G S +I+ + L+ L + +N G +P
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 61/245 (24%)
Query: 7 KEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCN---QVGR 63
++ ALL+ K+ L N + LSSW D + W+G+ C+ Q R
Sbjct: 6 QDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRT------------WLGVLCDTDTQTYR 51
Query: 64 VISIDLSSMGLNGALQKFAFSSFPHLMHFNLSF----NLFFGIIPPQVGXXXXXXXXXXX 119
V ++DLS GLN SS +L + N + N G IPP +
Sbjct: 52 VNNLDLS--GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ------- 102
Query: 120 XXXXKYLSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDL 179
L L ++ +SG+I P + K+L+ LD
Sbjct: 103 ------LHYLYITHTNVSGAI------------------------PDFLSQIKTLVTLDF 132
Query: 180 SENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSL-STLRLHINQLNGVISP 238
S N L+G++P S +L NL ++ + +SG+IP + G+ L +++ + N+L G I P
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 239 SIANL 243
+ ANL
Sbjct: 193 TFANL 197
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 164 IPSIIGNFKSLLRLDLSE-NQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSL 222
IPS + N L L + N L G IP + L L + + ++SG+IP L +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 223 STLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265
TL N L+G + PSI++L +L + N + G +P+ G
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
G IP I L L ++ ++G+IP + L + ++LSG++PP++ +L +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRT-LFLYNNGLYGFVP 261
L + N+++G I S + S L T + + N L G +P
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 14/172 (8%)
Query: 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGXXXXXXXXXXX 119
Q+ ++++D S L+G L + SS P+L+ N G IP G
Sbjct: 123 QIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 120 XXXXKY-----------LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSII 168
L+ +DLS+N L G + +
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKV 240
Query: 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLK 220
G K+L LDL N++ G++P L L +++ ++L G IP GNL+
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 168 IGNFKSLL---RLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSLS 223
IG F L+ L L NQL P F +L LT +SL + L S+P + L SL
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160
Query: 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262
LRL+ NQL V + L+ L+TL L NN L VPE
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 163 SIPS-IIGNFKSLLRLDLSENQLNGSIPLS-FGNLNNLTMMSLFSDSLSGSIPPNL-GNL 219
++P+ I K+L L +++N+L ++P+ F L NL + L + L S+PP + +L
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSL 132
Query: 220 KSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262
L+ L L N+L + L+SL+ L LYNN L VPE
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLST 224
P + + L L L N+L F L +L + L+++ L L L T
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 225 LRLHINQLNGVISPSIANLSSLRTLFLYNN 254
L+L NQL V + +L L+ L L N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 164 IPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLS 223
+P + N+K L +DLS N+++ SF N+ L + L + L P LKSL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257
L LH N ++ V + +LS+L L + N LY
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
S+P+ I +L L + NQ+ P F +L LT ++L + L+ L
Sbjct: 32 ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
L+ L LHINQL + NL SL ++L+NN
Sbjct: 90 LTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%)
Query: 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLST 224
P + +L L L +N L +F +L NLT + L + +S L SL
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 225 LRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265
L LH N++ V + +L L TL+L+ N L E +
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 171 FKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHIN 230
SL RL L +N++ P +F +L L + LF+++LS L L++L LRL+ N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%)
Query: 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLST 224
P + +L L L +N L +F +L NLT + L + +S L SL
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 225 LRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265
L LH N++ V + +L L TL+L+ N L E +
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 171 FKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHIN 230
SL RL L +N++ P +F +L L + LF+++LS L L++L LRL+ N
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLST 224
P + +L L L +N L +F +L NLT + L + + L SL
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 225 LRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264
L LH N + V + +L L TL+L+ N L +P E+
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEV 219
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 164 IPSI----IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNL 219
IPS+ SL RL L +N + P +F +L L + LF+++LS L L
Sbjct: 164 IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPL 223
Query: 220 KSLSTLRLHIN 230
+SL LRL+ N
Sbjct: 224 RSLQYLRLNDN 234
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 176 RLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGV 235
R+ L N+++ SF + NLT++ L S++L+G L L L L N V
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 236 ISP-SIANLSSLRTLFLYNNGLYGFVPEEIGCCLF 269
+ P + L L TL L GL +E+G LF
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGL-----QELGPGLF 124
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ + +L LDL+ NQ++ PLS L LT + L ++ +S P L L +L+ L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLEL 294
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQL ISP I+NL +L L LY N + P
Sbjct: 295 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP 326
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ +L L+L+ENQL P+S NL NLT ++L+ +++S P + +L L L
Sbjct: 283 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ N+++ V S+ANL+++ L +N + P
Sbjct: 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
LNNLT ++ ++ L+ P L NL L + ++ NQ+ I+P +ANL++L L L+NN
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 122
Query: 255 GLYGFVP 261
+ P
Sbjct: 123 QITDIDP 129
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ N L+ + ++ NQ+ PL+ NL NLT ++LF++ ++ P L NL +L+ L L
Sbjct: 86 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141
Query: 228 HINQLNGVISPSIANLSSLRTL 249
N ++ + +++ L+SL+ L
Sbjct: 142 SSNTISDI--SALSGLTSLQQL 161
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ + +L LDL+ NQ++ PLS L LT + L ++ +S P L L +L+ L L
Sbjct: 238 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLEL 293
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQL ISP I+NL +L L LY N + P
Sbjct: 294 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP 325
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
LNNLT ++ ++ L+ P L NL L + ++ NQ+ I+P +ANL++L L L+NN
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 121
Query: 255 GLYGFVP 261
+ P
Sbjct: 122 QITDIDP 128
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ +L L+L+ENQL P+S NL NLT ++L+ +++S P + +L L L
Sbjct: 282 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 337
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
N+++ V S+ANL+++ L +N + P
Sbjct: 338 ANNKVSDV--SSLANLTNINWLSAGHNQISDLTP 369
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ N L+ + ++ NQ+ PL+ NL NLT ++LF++ ++ P L NL +L+ L L
Sbjct: 85 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 140
Query: 228 HINQLNGVISPSIANLSSLRTL 249
N ++ + +++ L+SL+ L
Sbjct: 141 SSNTISDI--SALSGLTSLQQL 160
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ + +L LDL+ NQ++ PLS L LT + L ++ +S P L L +L+ L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQL ISP I+NL +L L LY N + P
Sbjct: 291 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP 322
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ N L+ + ++ NQ+ PL NL NLT ++LF++ ++ P L NL +L+ L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
N ++ + +++ L+SL+ L +N + P
Sbjct: 137 SSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP 168
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
LNNLT ++ ++ L+ P L NL L + ++ NQ+ I+P +ANL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 117
Query: 255 GLYGFVP 261
+ P
Sbjct: 118 QITDIDP 124
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ +L L+L+ENQL P+S NL NLT ++L+ +++S P + +L L L
Sbjct: 279 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
N+++ V S+ANL+++ L +N + P
Sbjct: 335 SNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ + +L LDL+ NQ++ PLS L LT + L ++ +S P L L +L+ L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQL ISP I+NL +L L LY N + P
Sbjct: 291 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP 322
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ +L L+L+ENQL P+S NL NLT ++L+ +++S P + +L L L
Sbjct: 279 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ N+++ V S+ANL+++ L +N + P
Sbjct: 335 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ N L+ + ++ NQ+ PL NL NLT ++LF++ ++ P L NL +L+ L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
N ++ + +++ L+SL+ L +N + P
Sbjct: 137 SSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP 168
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
LNNLT ++ ++ L+ P L NL L + ++ NQ+ I+P +ANL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 117
Query: 255 GLYGFVP 261
+ P
Sbjct: 118 QITDIDP 124
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ + +L LDL+ NQ++ PLS L LT + L ++ +S P L L +L+ L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQL ISP I+NL +L L LY N + P
Sbjct: 291 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP 322
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ +L L+L+ENQL P+S NL NLT ++L+ +++S P + +L L L
Sbjct: 279 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ N+++ V S+ANL+++ L +N + P
Sbjct: 335 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ N L+ + ++ NQ+ PL NL NLT ++LF++ ++ P L NL +L+ L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
N ++ + +++ L+SL+ L +N + P
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP 168
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
LNNLT ++ ++ L+ P L NL L + ++ NQ+ I+P +ANL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 117
Query: 255 GLYGFVP 261
+ P
Sbjct: 118 QITDIDP 124
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ + +L LDL+ NQ++ PLS L LT + L ++ +S P L L +L+ L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQL ISP I+NL +L L LY N + P
Sbjct: 290 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP 321
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ +L L+L+ENQL P+S NL NLT ++L+ +++S P + +L L L
Sbjct: 278 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ N+++ V S+ANL+++ L +N + P
Sbjct: 334 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
LNNLT ++ ++ L+ P L NL L + ++ NQ+ I+P +ANL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 117
Query: 255 GLYGFVP 261
+ P
Sbjct: 118 QITDIDP 124
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ N L+ + ++ NQ+ PL+ NL NLT ++LF++ ++ P L NL +L+ L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 228 HINQLNGVISPSIANLSSLRTL 249
N ++ + +++ L+SL+ L
Sbjct: 137 SSNTISDI--SALSGLTSLQQL 156
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ + +L LDL+ NQ++ PLS L LT + L ++ +S P L L +L+ L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQL ISP I+NL +L L LY N + P
Sbjct: 290 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP 321
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
LNNLT ++ ++ L+ P L NL L + ++ NQ+ I+P +ANL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 117
Query: 255 GLYGFVP 261
+ P
Sbjct: 118 QITDIDP 124
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ +L L+L+ENQL P+S NL NLT ++L+ +++S P + +L L L
Sbjct: 278 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333
Query: 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
N+++ V S+ANL+++ L +N + P
Sbjct: 334 SNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 168 IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227
+ N L+ + ++ NQ+ PL+ NL NLT ++LF++ ++ P L NL +L+ L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 228 HINQLNGVISPSIANLSSLRTL 249
N ++ + +++ L+SL+ L
Sbjct: 137 SSNTISDI--SALSGLTSLQQL 156
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 163 SIPS-IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLK 220
S+P + +L L+L+ NQL F L NLT + L + L S+P + L
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
L LRL+ NQL V L+SL+ ++L++N
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 163 SIPS-IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLK 220
S+P+ + +L L L ENQL F L NLT ++L + L S+P + L
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLT 157
Query: 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264
+L+ L L NQL + L+ L+ L LY N L VP+ +
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGV 200
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 167 IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSLSTL 225
+ SL L+LS NQL F L L ++L ++ L S+P + L L L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDL 129
Query: 226 RLHINQLNGVISPSIANLSSLRTLFLYNN 254
RL+ NQL V L+SL+ ++L++N
Sbjct: 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 167 IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSLSTL 225
+ SL +L L N+L F L +LT ++L ++ L S+P + L L L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105
Query: 226 RLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264
L+ NQL + L+ L+ L LY N L VP+ +
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGV 143
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 162 GSIPSIIGNFKSLLRL---DLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGN 218
G++P +G F SL +L DL NQL F L +L + + + L+ +P +
Sbjct: 77 GALP--VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER 133
Query: 219 LKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
L L+ L L NQL + + LSSL +L+ N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLK 220
S+P+ I +L L +NQ+ P F +L NL + L S+ L G++P + +L
Sbjct: 32 ASVPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256
L+ L L NQL + S L L+ LF+ N L
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 164 IPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSL 222
+P I ++L LDLS+ QL P +F +L++L ++++ S+ L S+P + L SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 223 STLRLHIN 230
+ LH N
Sbjct: 521 QKIWLHTN 528
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 188 IPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLR 247
+P F L NLT + L L P +L SL L + NQL V L+SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 248 TLFLYNN 254
++L+ N
Sbjct: 522 KIWLHTN 528
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSLS 223
P +K L R+DLS NQ++ P +F L +L + L+ + ++ +P +L L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256
L L+ N++N + + +L +L L LY+N L
Sbjct: 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSLS 223
P +K L R+DLS NQ++ P +F L +L + L+ + ++ +P +L L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256
L L+ N++N + + +L +L L LY+N L
Sbjct: 108 LLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 167 IIGNFKSLLRLDLSENQLNGSIPLS-FGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSLST 224
+ + L L L+ NQL S+PL F +L L + L + L S+P + L L
Sbjct: 78 VFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135
Query: 225 LRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256
LRL+ NQL + + + L++L+TL L N L
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 167 IIGNFKSLLRLDLSENQLNGSIPLS-FGNLNNLTMMSLFSDSLSGSIPPNL-GNLKSLST 224
+ + L L L+ NQL S+PL F +L L + L + L S+P + L L
Sbjct: 78 VFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135
Query: 225 LRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256
LRL+ NQL + + + L++L+TL L N L
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 167 IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLR 226
I L +++ S N++ +F + + + L S+ L L+SL TL
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 227 LHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
L N++ V + S LSS+R L LY+N + P
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 172 KSLLRLDLSENQLNGSI------PLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTL 225
+S+L L+LS N L GS+ + +L+N +MS IP ++ +L++L L
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---------IPKDVTHLQALQEL 478
Query: 226 RLHINQLNGVISPSIANLSSLRTLFLYNN 254
+ NQL V L+SL+ ++L++N
Sbjct: 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
S+P+ I +L L +NQ+ P F L LT + L ++ L+ L
Sbjct: 22 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
L+ L L+ NQL + + NL SL ++L NN
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
S+P+ I +L L +NQ+ P F L LT + L ++ L+ L
Sbjct: 30 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
L+ L L+ NQL + + NL SL ++L NN
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 174 LLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLN 233
LL+L+LS+N L F NL+ L ++ L + + + L +L L L NQL
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 234 GVISPSIANLSSLRTLFLYNN 254
V L+SL+ ++L+ N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 163 SIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSL 222
+P+ I N +L LDLS N+L S+P G+ L F D++ ++P GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNL 318
Query: 223 STLRLHINQLN 233
L + N L
Sbjct: 319 QFLGVEGNPLE 329
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 163 SIPS-IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLK 220
S+P+ + +L L L ENQL F L NLT + L+ + L S+P + L
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLT 157
Query: 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264
+L+ L L NQL + L+ L+ L L +N L VP+ +
Sbjct: 158 NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGV 200
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 163 SIPS-IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLK 220
S+P + +L L L NQL F L NLT + L ++ L S+P + L
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLT 181
Query: 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254
L L L+ NQL V L+SL ++L NN
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 163 SIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKS 221
S+P+ I + S RL+L N+L F L LT +SL + + S+P + L
Sbjct: 21 SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264
L+ L LH N+L + + L+ L+ L L N L VP+ I
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGI 119
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221
S+P+ I +L L +N++ P F L LT + L ++ L+ L
Sbjct: 22 ASVPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGC 266
L+ L L+ NQL + + NL SL ++L NN P + C
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN------PWDCAC 118
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 192 FGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFL 251
FG L +L + L + L+G P + L+L N++ + + L L+TL L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 252 YNNGLYGFVP 261
Y+N + +P
Sbjct: 110 YDNQISCVMP 119
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 172 KSLLRLDLSENQLNGSIPLSFGNLN-NLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHIN 230
KSLL L++S N L +I F L + ++ L S+ + SIP + L++L L + N
Sbjct: 399 KSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454
Query: 231 QLNGVISPSIANLSSLRTLFLYNN 254
QL V L+SL+ ++L+ N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 166 SIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTL 225
S I +S+ LDL+ Q+ PL+ L+NL ++ L + ++ P L L +L L
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYL 162
Query: 226 RLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+ NQ+N ++P +ANLS L TL +N + P
Sbjct: 163 SIGNNQVND-LTP-LANLSKLTTLRADDNKISDISP 196
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 126 LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLN 185
L TLDLS NQL S+P + +L LD+S N+L
Sbjct: 79 LGTLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLT 113
Query: 186 GSIPL-SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS 244
S+PL + L L + L + L P L L L L NQL + + + L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 245 SLRTLFLYNNGLYGFVPEEIGCCLFP 270
+L TL L N LY G L P
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 126 LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLN 185
L TLDLS NQL S+P + +L LD+S N+L
Sbjct: 79 LGTLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLT 113
Query: 186 GSIPL-SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS 244
S+PL + L L + L + L P L L L L NQL + + + L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 245 SLRTLFLYNNGLYGFVPEEIGCCLFP 270
+L TL L N LY G L P
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 126 LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLN 185
L TLDLS NQL S+P + +L LD+S N+L
Sbjct: 79 LGTLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLT 113
Query: 186 GSIPL-SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS 244
S+PL + L L + L + L P L L L L NQL + + + L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 245 SLRTLFLYNNGLYGFVPEEIGCCLFP 270
+L TL L N LY G L P
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 126 LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLN 185
L TLDLS NQL S+P + +L LD+S N+L
Sbjct: 79 LGTLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLT 113
Query: 186 GSIPL-SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS 244
S+PL + L L + L + L P L L L L NQL + + + L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 245 SLRTLFLYNNGLYGFVPEEIGCCLFP 270
+L TL L N LY G L P
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 173 SLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQL 232
SL L L N++ S LNNL + L +S+S +L N L L L+ N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 233 NGVISPSIANLSSLRTLFLYNNGL 256
V +A+ ++ ++L+NN +
Sbjct: 253 VKVPG-GLADHKYIQVVYLHNNNI 275
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 173 SLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQL 232
SL L L N++ S LNNL + L +S+S +L N L L L+ N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 233 NGVISPSIANLSSLRTLFLYNNGL 256
V +A+ ++ ++L+NN +
Sbjct: 253 VKVPG-GLADHKYIQVVYLHNNNI 275
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 170 NFKSLLRLDLSENQLNG-SIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNL--KSLSTLR 226
N K+L RLDLS+NQ+ + SFG LN+L + S+ + L L K+LS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 227 LHINQLNGVIS 237
L N L +S
Sbjct: 181 LAANSLYSRVS 191
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 24/116 (20%)
Query: 166 SIIGNFKSLLRLDLSENQLNGSIPLS--------------------FGNLNNLTMMSLFS 205
S I +S+ LDL+ Q+ PL+ L NL +S+ +
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160
Query: 206 DSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261
+S P L NL L+TL+ N+++ ISP +A+L +L + L NN + P
Sbjct: 161 AQVSDLTP--LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP 212
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 163 SIPSIIGN-FKSLLRLDLSE-NQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLK 220
SIPS N SL+RLDL E +L +F L NL ++L ++ PNL L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLV 218
Query: 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYN 253
L L + N + S LSSL+ L++ N
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 27/146 (18%)
Query: 126 LSTLDLSQNQLSGSIXXXXXXXXXXXXXXXXXXXXXGSIPSIIGNFKSLLRLDLSENQLN 185
L TLDLS NQL S+P + +L LD+S N+L
Sbjct: 79 LGTLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLT 113
Query: 186 GSIPL-SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS 244
S+PL + L L + L + L P L L L L N L + + + L
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLE 172
Query: 245 SLRTLFLYNNGLYGFVPEEIGCCLFP 270
+L TL L N LY G L P
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLP 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,520,893
Number of Sequences: 62578
Number of extensions: 218862
Number of successful extensions: 666
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 182
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)