Query 040280
Match_columns 271
No_of_seqs 237 out of 3237
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.5E-33 1.8E-37 268.0 22.1 250 5-270 27-286 (968)
2 PLN00113 leucine-rich repeat r 99.9 7E-26 1.5E-30 219.8 15.9 207 63-270 141-358 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.6E-23 5.6E-28 180.8 1.0 204 63-267 174-439 (873)
4 KOG4194 Membrane glycoprotein 99.8 1.8E-20 3.8E-25 163.3 9.4 226 43-270 44-343 (873)
5 KOG0444 Cytoskeletal regulator 99.8 9.1E-22 2E-26 172.7 -4.1 201 63-268 127-362 (1255)
6 KOG4237 Extracellular matrix p 99.8 9.4E-21 2E-25 158.0 -0.5 226 43-270 35-348 (498)
7 KOG0617 Ras suppressor protein 99.8 4.8E-21 1E-25 143.3 -5.0 166 83-267 29-195 (264)
8 KOG0444 Cytoskeletal regulator 99.8 1.3E-20 2.8E-25 165.5 -5.3 189 63-257 151-375 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 1.1E-18 2.5E-23 146.1 2.7 198 56-262 246-544 (565)
10 KOG0617 Ras suppressor protein 99.7 1.7E-19 3.8E-24 135.0 -5.8 161 61-241 32-193 (264)
11 PLN03210 Resistant to P. syrin 99.7 9.8E-16 2.1E-20 150.7 17.9 201 62-270 634-895 (1153)
12 KOG0472 Leucine-rich repeat pr 99.7 9.5E-20 2.1E-24 152.5 -10.7 195 63-267 69-297 (565)
13 PLN03210 Resistant to P. syrin 99.6 5.3E-15 1.1E-19 145.6 17.1 200 62-270 611-871 (1153)
14 cd00116 LRR_RI Leucine-rich re 99.6 3.8E-16 8.3E-21 133.4 4.6 197 62-259 51-293 (319)
15 PLN03150 hypothetical protein; 99.6 1E-14 2.2E-19 134.8 14.3 153 5-185 370-528 (623)
16 PRK15370 E3 ubiquitin-protein 99.6 6.4E-15 1.4E-19 137.3 12.4 173 63-257 200-380 (754)
17 PRK15387 E3 ubiquitin-protein 99.6 5.5E-15 1.2E-19 137.4 10.7 186 62-267 242-468 (788)
18 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-15 2.4E-20 130.5 4.6 195 61-256 80-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.6 4.4E-15 9.5E-20 138.4 8.6 180 62-264 220-407 (754)
20 PRK15387 E3 ubiquitin-protein 99.6 7.7E-14 1.7E-18 129.8 15.9 184 63-270 223-447 (788)
21 KOG0618 Serine/threonine phosp 99.6 1.1E-16 2.4E-21 146.2 -3.7 128 124-255 359-487 (1081)
22 KOG4237 Extracellular matrix p 99.5 1.1E-15 2.4E-20 128.0 -3.7 197 60-257 89-359 (498)
23 KOG0618 Serine/threonine phosp 99.5 1.3E-15 2.7E-20 139.3 -3.8 189 63-258 242-466 (1081)
24 KOG0532 Leucine-rich repeat (L 99.3 5.5E-14 1.2E-18 122.8 -5.0 161 65-233 78-247 (722)
25 KOG1259 Nischarin, modulator o 99.3 5.9E-13 1.3E-17 108.5 0.5 170 82-258 209-413 (490)
26 PLN03150 hypothetical protein; 99.3 1.6E-11 3.5E-16 113.7 8.7 112 150-261 420-532 (623)
27 COG4886 Leucine-rich repeat (L 99.3 7.6E-12 1.7E-16 110.2 5.9 170 86-262 115-295 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 4.3E-13 9.4E-18 117.3 -5.1 191 66-266 54-255 (722)
29 PF14580 LRR_9: Leucine-rich r 99.2 3.4E-11 7.4E-16 93.0 5.2 122 125-251 20-147 (175)
30 COG4886 Leucine-rich repeat (L 99.1 9.5E-11 2.1E-15 103.3 5.3 172 91-270 97-279 (394)
31 KOG1909 Ran GTPase-activating 99.1 3.3E-11 7.2E-16 99.9 1.0 174 83-256 88-310 (382)
32 PF14580 LRR_9: Leucine-rich r 99.1 2.1E-10 4.6E-15 88.7 4.9 111 144-259 15-128 (175)
33 KOG3207 Beta-tubulin folding c 99.0 2.8E-11 6.2E-16 103.0 -0.1 194 63-257 122-339 (505)
34 KOG3207 Beta-tubulin folding c 99.0 5.2E-11 1.1E-15 101.4 1.1 173 84-257 118-314 (505)
35 KOG1909 Ran GTPase-activating 99.0 1.3E-10 2.8E-15 96.5 2.2 196 61-257 29-283 (382)
36 KOG1259 Nischarin, modulator o 98.9 3.2E-10 6.9E-15 92.7 0.9 117 148-270 284-401 (490)
37 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.8E-14 68.9 3.7 59 125-183 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.7E-14 69.6 2.6 60 197-256 2-61 (61)
39 COG5238 RNA1 Ran GTPase-activa 98.7 1.2E-08 2.5E-13 82.5 3.6 140 121-260 89-258 (388)
40 KOG1859 Leucine-rich repeat pr 98.6 4.2E-10 9E-15 101.6 -7.5 168 82-257 104-292 (1096)
41 PF08263 LRRNT_2: Leucine rich 98.5 3.5E-07 7.5E-12 53.7 4.5 42 6-59 2-43 (43)
42 KOG0531 Protein phosphatase 1, 98.4 1.2E-08 2.7E-13 90.4 -2.9 183 64-257 74-268 (414)
43 KOG2120 SCF ubiquitin ligase, 98.4 5.1E-09 1.1E-13 85.6 -5.8 56 63-118 186-241 (419)
44 KOG4658 Apoptotic ATPase [Sign 98.4 4.3E-07 9.3E-12 86.9 6.1 20 238-257 711-730 (889)
45 KOG4579 Leucine-rich repeat (L 98.4 1.7E-08 3.7E-13 73.5 -3.5 108 88-209 28-136 (177)
46 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.8E-12 77.5 0.5 186 63-250 72-285 (418)
47 KOG0531 Protein phosphatase 1, 98.3 7.5E-08 1.6E-12 85.4 -1.8 96 61-161 94-199 (414)
48 KOG2120 SCF ubiquitin ligase, 98.2 4.9E-08 1.1E-12 79.9 -5.1 165 88-254 186-373 (419)
49 KOG4658 Apoptotic ATPase [Sign 98.2 1.6E-06 3.5E-11 83.0 4.2 128 123-251 544-675 (889)
50 KOG4579 Leucine-rich repeat (L 98.1 1E-07 2.3E-12 69.4 -3.2 135 126-265 29-167 (177)
51 KOG1644 U2-associated snRNP A' 98.1 7.3E-06 1.6E-10 63.7 5.6 103 125-229 43-149 (233)
52 PF12799 LRR_4: Leucine Rich r 98.1 4.3E-06 9.2E-11 49.2 3.2 36 221-257 2-37 (44)
53 KOG1859 Leucine-rich repeat pr 98.0 2.4E-07 5.1E-12 84.3 -3.9 166 86-258 83-268 (1096)
54 COG5238 RNA1 Ran GTPase-activa 98.0 2.6E-06 5.7E-11 69.2 1.8 14 62-75 30-43 (388)
55 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.3E-10 47.4 3.9 34 126-160 3-36 (44)
56 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.4E-10 75.5 2.9 127 121-249 145-280 (699)
57 KOG3665 ZYG-1-like serine/thre 97.8 5.9E-06 1.3E-10 77.3 0.9 138 124-263 122-269 (699)
58 PRK15386 type III secretion pr 97.7 0.00016 3.5E-09 63.1 8.7 76 83-184 48-124 (426)
59 PRK15386 type III secretion pr 97.7 0.00014 3.1E-09 63.4 7.9 41 62-107 52-92 (426)
60 PF13306 LRR_5: Leucine rich r 97.6 0.0002 4.3E-09 52.5 6.7 122 144-271 8-129 (129)
61 KOG2982 Uncharacterized conser 97.6 5.9E-05 1.3E-09 62.3 3.6 184 63-259 46-264 (418)
62 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.4E-09 55.9 5.6 104 87-206 42-150 (233)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00064 1.4E-08 49.7 7.1 16 80-95 5-20 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00014 2.9E-09 58.9 2.1 100 147-250 42-149 (260)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00072 1.6E-08 54.8 2.5 88 169-258 40-130 (260)
66 PF00560 LRR_1: Leucine Rich R 96.8 0.00045 9.8E-09 33.9 0.5 22 245-267 1-22 (22)
67 KOG2123 Uncharacterized conser 96.4 0.00012 2.6E-09 59.9 -4.5 81 149-234 20-102 (388)
68 KOG2123 Uncharacterized conser 96.1 0.00035 7.6E-09 57.3 -3.8 88 171-262 18-106 (388)
69 KOG1947 Leucine rich repeat pr 95.1 0.002 4.4E-08 58.0 -2.9 100 85-184 186-307 (482)
70 PF13504 LRR_7: Leucine rich r 94.9 0.015 3.3E-07 26.4 1.0 13 245-257 2-14 (17)
71 KOG4341 F-box protein containi 94.4 0.0054 1.2E-07 53.2 -2.0 109 147-255 319-437 (483)
72 KOG4308 LRR-containing protein 93.9 0.0004 8.7E-09 62.5 -10.3 186 64-258 89-304 (478)
73 PF13516 LRR_6: Leucine Rich r 91.8 0.038 8.2E-07 27.5 -0.4 16 244-259 2-17 (24)
74 smart00369 LRR_TYP Leucine-ric 91.6 0.17 3.6E-06 25.6 1.9 19 244-263 2-20 (26)
75 smart00370 LRR Leucine-rich re 91.6 0.17 3.6E-06 25.6 1.9 19 244-263 2-20 (26)
76 KOG0473 Leucine-rich repeat pr 91.5 0.0022 4.8E-08 51.4 -7.8 88 143-233 37-124 (326)
77 smart00370 LRR Leucine-rich re 90.5 0.27 5.9E-06 24.7 2.1 15 87-101 2-16 (26)
78 smart00369 LRR_TYP Leucine-ric 90.5 0.27 5.9E-06 24.7 2.1 15 87-101 2-16 (26)
79 KOG3864 Uncharacterized conser 90.1 0.047 1E-06 42.9 -1.5 84 172-255 101-187 (221)
80 KOG3864 Uncharacterized conser 89.8 0.062 1.3E-06 42.3 -1.1 87 146-232 99-188 (221)
81 KOG1947 Leucine rich repeat pr 88.8 0.18 3.8E-06 45.4 1.0 14 218-231 293-306 (482)
82 KOG4308 LRR-containing protein 88.8 0.0023 5E-08 57.6 -11.0 167 89-264 89-282 (478)
83 KOG0473 Leucine-rich repeat pr 86.0 0.01 2.2E-07 47.7 -7.5 81 125-208 43-123 (326)
84 smart00364 LRR_BAC Leucine-ric 84.3 0.7 1.5E-05 23.5 1.3 19 244-263 2-20 (26)
85 smart00365 LRR_SD22 Leucine-ri 76.0 2.5 5.4E-05 21.5 1.7 15 243-257 1-15 (26)
86 smart00368 LRR_RI Leucine rich 74.8 1.7 3.7E-05 22.4 1.0 15 220-234 2-16 (28)
87 KOG4341 F-box protein containi 72.4 2.4 5.1E-05 37.4 1.8 130 121-250 317-458 (483)
88 KOG3763 mRNA export factor TAP 71.2 2.6 5.7E-05 38.4 1.9 65 170-235 216-285 (585)
89 KOG3763 mRNA export factor TAP 64.4 4.3 9.3E-05 37.1 1.8 68 60-139 216-285 (585)
90 smart00367 LRR_CC Leucine-rich 41.6 20 0.00043 17.7 1.4 15 243-257 1-16 (26)
91 TIGR00864 PCC polycystin catio 25.9 51 0.0011 36.6 2.5 32 68-100 1-32 (2740)
92 TIGR00864 PCC polycystin catio 21.0 59 0.0013 36.1 1.8 33 178-210 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.5e-33 Score=268.00 Aligned_cols=250 Identities=39% Similarity=0.587 Sum_probs=202.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhC
Q 040280 5 SSKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFS 84 (271)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~ 84 (271)
...|+.||++|++++.+ +...+++|. . .. ++|.|.|+.|+..++|+.|+|+++++.+.++. .|.
T Consensus 27 ~~~~~~~l~~~~~~~~~-~~~~~~~w~-----~-----~~----~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~ 90 (968)
T PLN00113 27 HAEELELLLSFKSSIND-PLKYLSNWN-----S-----SA----DVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIF 90 (968)
T ss_pred CHHHHHHHHHHHHhCCC-CcccCCCCC-----C-----CC----CCCcCcceecCCCCcEEEEEecCCCccccCCh-HHh
Confidence 34789999999999964 556778997 3 44 78999999999878999999999999998887 899
Q ss_pred CCCCCcEEECCCCCCcccCchhhc-cCCCCCEEecCCC---------CCCCCcEEEccCCcCCCccccccCCCCCCCEEE
Q 040280 85 SFPHLMHFNLSFNLFFGIIPPQVG-NLSELLHLDLVLE---------NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLY 154 (271)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~~---------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 154 (271)
.+++|++|++++|.+.+.+|..+. .+++|++|+++.+ .+++|++|++++|.+.+..|..++++++|++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 999999999999999988887755 8999999999764 456788888888888877888888888888888
Q ss_pred cccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCc
Q 040280 155 LYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNG 234 (271)
Q Consensus 155 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~ 234 (271)
+++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 88888877778778888888888888888777777777777778888777777777777777777777777777777776
Q ss_pred cChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 235 VISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 235 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
.+|..+.++++|++|++++|++++.+|..+++++.|
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 777777777777777777777766666666665554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=7e-26 Score=219.83 Aligned_cols=207 Identities=35% Similarity=0.517 Sum_probs=122.2
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDL 131 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l 131 (271)
++++|+|++|.+.+.+|. .++.+++|++|++++|.+.+.+|..+.++++|++|+++. ..+++|++|++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 445555555555555555 566666666666666666656666666666666666643 23445666666
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGS 211 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 211 (271)
++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 66666655666666666666666666666555666666666666666666666555555555566666666666665555
Q ss_pred CcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 212 IPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 212 ~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.++.|
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 55555555556666666665555555555555555555555555555555555554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.6e-23 Score=180.76 Aligned_cols=204 Identities=27% Similarity=0.271 Sum_probs=122.4
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC----------------------
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------------------- 120 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------- 120 (271)
+++.|+|++|.|+ .+....|..+.+|.+|.|+.|.++...+..|.++++|+.|+|..
T Consensus 174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 5566666666665 23333555555666666666666555555555566666655521
Q ss_pred -------------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCC--
Q 040280 121 -------------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLN-- 185 (271)
Q Consensus 121 -------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-- 185 (271)
-.+.++++|+++.|++...-..++.+++.|+.|++++|.|....++++...++|++|+++.|+++
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 12223444444444444333334445555555555555555444455555555555555555554
Q ss_pred ----------------------CccchhccCCCCCCEEEeecCcCCCCCcc---cccCCCCCCEEEcccCcCCccChhhh
Q 040280 186 ----------------------GSIPLSFGNLNNLTMMSLFSDSLSGSIPP---NLGNLKSLSTLRLHINQLNGVISPSI 240 (271)
Q Consensus 186 ----------------------~~~p~~~~~l~~L~~L~l~~n~l~~~~p~---~~~~l~~L~~L~l~~n~i~~~~~~~~ 240 (271)
..-...|..+++|++|++.+|.+++.+.+ .|..+++|+.|++.+|++......+|
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence 33334455566777777777777655433 36678888888888888886666788
Q ss_pred cCCCCCCEEeCccCcccccCccccccC
Q 040280 241 ANLSSLRTLFLYNNGLYGFVPEEIGCC 267 (271)
Q Consensus 241 ~~l~~L~~L~l~~n~l~~~~p~~~~~l 267 (271)
.++++|++|||.+|.+....|+.|..+
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccCcccceecCCCCcceeecccccccc
Confidence 888888888888888887777777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-20 Score=163.31 Aligned_cols=226 Identities=23% Similarity=0.219 Sum_probs=142.3
Q ss_pred CCCCCCCCCcccceeeCCCC---------------CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhh
Q 040280 43 HSKPKISPCAWVGISCNQVG---------------RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQV 107 (271)
Q Consensus 43 ~~~~~~~~c~~~~v~~~~~~---------------~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 107 (271)
..||..|+|.-.-..|+..+ ..+.|++++|.+...-+. .|.++++|+.+++..|.++ .+|...
T Consensus 44 ~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~-~f~nl~nLq~v~l~~N~Lt-~IP~f~ 121 (873)
T KOG4194|consen 44 SECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFE-FFYNLPNLQEVNLNKNELT-RIPRFG 121 (873)
T ss_pred ccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHH-HHhcCCcceeeeeccchhh-hccccc
Confidence 57999999977777776421 346799999988744333 6677777777777776665 355433
Q ss_pred ccCCCCCEEecCC------------------------CCC-----------CCCcEEEccCCcCCCccccccCCCCCCCE
Q 040280 108 GNLSELLHLDLVL------------------------ENL-----------KYLSTLDLSQNQLSGSISFSLGKLSSLDL 152 (271)
Q Consensus 108 ~~l~~L~~L~l~~------------------------~~l-----------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 152 (271)
....+|+.|+|.. +.+ .++++|++++|.|+..-...|.++.+|.+
T Consensus 122 ~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 122 HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT 201 (873)
T ss_pred ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence 3344455555532 211 35667777777776555556667777777
Q ss_pred EEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhc------------------------cCCCCCCEEEeecCcC
Q 040280 153 LYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSF------------------------GNLNNLTMMSLFSDSL 208 (271)
Q Consensus 153 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~------------------------~~l~~L~~L~l~~n~l 208 (271)
|.|++|+++...+..|.++++|+.|++.+|++.-.--..| ..+.++++|++..|++
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 7777777774444566667777777777776542112223 3344555555555555
Q ss_pred CCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 209 SGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 209 ~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
...-.+++-++++|+.|++++|.|...-++.+.-+++|++|+|+.|+++..-+..|..|..|
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 43334455566777777777777776667777777788888888888875555566655544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=9.1e-22 Score=172.74 Aligned_cols=201 Identities=27% Similarity=0.396 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC-----------CCCCCcEEEc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE-----------NLKYLSTLDL 131 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~-----------~l~~L~~L~l 131 (271)
+..+|+|++|+|. +||...|.+++.|-.|||++|.+. .+|+.+.++..|+.|.|+.+ .+++|++|++
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 5667777777775 677767788888888888888886 57778888888888888662 2234445555
Q ss_pred cCCcCC-CccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC----------------------cc
Q 040280 132 SQNQLS-GSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG----------------------SI 188 (271)
Q Consensus 132 ~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~----------------------~~ 188 (271)
++.+-+ ..+|.++..+.+|..++++.|.+. .+|+.+..+++|..|++++|.++. .+
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence 544332 234445555555555555555554 445555555555555555555441 44
Q ss_pred chhccCCCCCCEEEeecCcCCC-CCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccC
Q 040280 189 PLSFGNLNNLTMMSLFSDSLSG-SIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCC 267 (271)
Q Consensus 189 p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 267 (271)
|+.+-++++|+.|.+.+|.++. .+|..++.+.+|+.+..++|.+. ..|+.++.|..|+.|.|+.|.+- ++|+.|.-|
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL 361 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL 361 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence 4444444555555554444421 24444555555555555555443 44555555555555555555554 455554444
Q ss_pred C
Q 040280 268 L 268 (271)
Q Consensus 268 ~ 268 (271)
+
T Consensus 362 ~ 362 (1255)
T KOG0444|consen 362 P 362 (1255)
T ss_pred C
Confidence 3
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=9.4e-21 Score=158.00 Aligned_cols=226 Identities=26% Similarity=0.305 Sum_probs=155.7
Q ss_pred CCCCCCCCCcc---cceeeCCCC----------CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhcc
Q 040280 43 HSKPKISPCAW---VGISCNQVG----------RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGN 109 (271)
Q Consensus 43 ~~~~~~~~c~~---~~v~~~~~~----------~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 109 (271)
..||.+|.|+- ..|.|+..+ ..+.|+|..|+|+ .+|+.+|+.+++|++|||++|+|+.+.|++|.+
T Consensus 35 ~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 35 SACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred ccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhh
Confidence 57999999965 457777543 5689999999998 788889999999999999999999999999999
Q ss_pred CCCCCEEecCC------------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCc-cccCCCCCCE
Q 040280 110 LSELLHLDLVL------------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPS-IIGNFKSLLR 176 (271)
Q Consensus 110 l~~L~~L~l~~------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~ 176 (271)
+..|..|-+.+ .++..++.|.+..|.+.-...+.|..++++..|.+.+|.+. .++. .|..+..++.
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKT 192 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccch
Confidence 99988877644 22233444444444444333444444444444444444443 2221 3333333333
Q ss_pred EEccCCc-------------------------------------------------------------CCCcc-chhccC
Q 040280 177 LDLSENQ-------------------------------------------------------------LNGSI-PLSFGN 194 (271)
Q Consensus 177 L~l~~n~-------------------------------------------------------------~~~~~-p~~~~~ 194 (271)
+.+..|. ..... ...|.+
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 3322222 11111 135667
Q ss_pred CCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 195 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
+++|++|++++|.+++.-+.+|.....+++|.|..|++...-...|.++..|+.|+|++|+++..-|-.|..+.+|
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 8888999999998887777888888888999998888876556678888888999999999887777777665544
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=4.8e-21 Score=143.34 Aligned_cols=166 Identities=30% Similarity=0.509 Sum_probs=104.4
Q ss_pred hCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCC
Q 040280 83 FSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSG 162 (271)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 162 (271)
+.++.+.+.|.+++|.++ .+|..++.+.+ |+.|++.+|+++ .+|..++.+++|+.|+++-|.+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~n-------------levln~~nnqie-~lp~~issl~klr~lnvgmnrl~- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKN-------------LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN- 92 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhh-------------hhhhhcccchhh-hcChhhhhchhhhheecchhhhh-
Confidence 334455666666666665 34555554433 335555666665 55666666666666666666665
Q ss_pred ccCccccCCCCCCEEEccCCcCCC-ccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhc
Q 040280 163 SIPSIIGNFKSLLRLDLSENQLNG-SIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIA 241 (271)
Q Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 241 (271)
..|..|+.++.|+.|++++|.+.. .+|..|..++.|+.|++++|.+. .+|..++.+++|+.|.+++|.+- .+|..++
T Consensus 93 ~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence 566666666666666666666543 45666666666666777776665 45666666677777777666655 4566666
Q ss_pred CCCCCCEEeCccCcccccCccccccC
Q 040280 242 NLSSLRTLFLYNNGLYGFVPEEIGCC 267 (271)
Q Consensus 242 ~l~~L~~L~l~~n~l~~~~p~~~~~l 267 (271)
.+..|++|.+.+|.++ .+|++++++
T Consensus 171 ~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHHHHHHhcccceee-ecChhhhhh
Confidence 6667777777777766 666666654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.3e-20 Score=165.55 Aligned_cols=189 Identities=26% Similarity=0.341 Sum_probs=142.5
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC------------CCCCCCcEEE
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL------------ENLKYLSTLD 130 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------~~l~~L~~L~ 130 (271)
.+-.|||++|++. .+|+ -+..+.+|++|+|++|.+....-..+..+++|+.|.++. ..+.+|+.++
T Consensus 151 DLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 4567889999886 6777 788888899999998877643334445555666666644 2334555555
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcc-----------------------cCcCCCccCccccCCCCCCEEEccCCcCCC-
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLY-----------------------SNSFSGSIPSIIGNFKSLLRLDLSENQLNG- 186 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~-----------------------~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~- 186 (271)
++.|++. .+|+.+-++++|+.|+++ .|.++ .+|..+..++.|+.|.+.+|+++-
T Consensus 229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred ccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc
Confidence 6655555 455555555555555555 44544 677888888888888888888763
Q ss_pred ccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 187 SIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 187 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
-+|+.++++..|+.+...+|.+. .+|..++.+.+|+.|.|..|++- .+|+++--++.|+.||+..|+--
T Consensus 307 GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 47999999999999999999987 78999999999999999999987 68999988999999999999654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.1e-18 Score=146.07 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=154.4
Q ss_pred eeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------------
Q 040280 56 ISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL--------------- 120 (271)
Q Consensus 56 v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------- 120 (271)
..|....++..|||.+|+++ ++|+ .+..+++|++||+++|.+++ .|.+++++ +|+.|.+.+
T Consensus 246 e~~~~L~~l~vLDLRdNklk-e~Pd-e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLK-EVPD-EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred HHhcccccceeeeccccccc-cCch-HHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence 34656778999999999998 7888 88889999999999999984 88899999 999998844
Q ss_pred ---------------------------------------------------------------CCCCCCcEEEccCCcCC
Q 040280 121 ---------------------------------------------------------------ENLKYLSTLDLSQNQLS 137 (271)
Q Consensus 121 ---------------------------------------------------------------~~l~~L~~L~l~~n~~~ 137 (271)
.+-.-.+.++++.|++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence 00001344555555443
Q ss_pred -----------------------CccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccC
Q 040280 138 -----------------------GSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGN 194 (271)
Q Consensus 138 -----------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 194 (271)
+.+|..++.+++|..|++++|.+. .+|..++.+..|++++++.|++. .+|..+..
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~ 479 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE 479 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh
Confidence 234445566778888888887776 77777888888888888888877 77777777
Q ss_pred CCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcc
Q 040280 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262 (271)
Q Consensus 195 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 262 (271)
+..++.+-.++|++...-|+.+.++.+|..||+.+|.+. .+|..++++.+|++|++.||+|. .|.
T Consensus 480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 777777777778887555566888999999999999987 77889999999999999999997 453
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=1.7e-19 Score=135.01 Aligned_cols=161 Identities=27% Similarity=0.462 Sum_probs=114.6
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSI 140 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~ 140 (271)
..++++|.|++|+++ .+|+ .++.+.+|+.|++++|++. ..|.+++.+++|+.|+ +..|.+. ..
T Consensus 32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~ln-------------vgmnrl~-~l 94 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILN-------------VGMNRLN-IL 94 (264)
T ss_pred hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhhee-------------cchhhhh-cC
Confidence 347899999999998 6777 7999999999999999998 5888998887777555 4445554 55
Q ss_pred ccccCCCCCCCEEEcccCcCC-CccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCC
Q 040280 141 SFSLGKLSSLDLLYLYSNSFS-GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNL 219 (271)
Q Consensus 141 ~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 219 (271)
|..|+.++.|+.||+.+|++. ..+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.+
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l 172 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL 172 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence 666777777777777766654 345666666666666777777766 56666677777777777766665 466666666
Q ss_pred CCCCEEEcccCcCCccChhhhc
Q 040280 220 KSLSTLRLHINQLNGVISPSIA 241 (271)
Q Consensus 220 ~~L~~L~l~~n~i~~~~~~~~~ 241 (271)
..|++|++++|+++ .+|..++
T Consensus 173 t~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 173 TRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHHHHhcccceee-ecChhhh
Confidence 67777777777666 3344443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=9.8e-16 Score=150.66 Aligned_cols=201 Identities=23% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC----------CCCCCcEEEc
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE----------NLKYLSTLDL 131 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~----------~l~~L~~L~l 131 (271)
.+++.|+|+++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|+++.+ .+++|+.|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence 4566666666554445553 556667777777766554556666777777777766541 3455666666
Q ss_pred cCCcCCCccccccC--------------------------------------------------CCCCCCEEEcccCcCC
Q 040280 132 SQNQLSGSISFSLG--------------------------------------------------KLSSLDLLYLYSNSFS 161 (271)
Q Consensus 132 ~~n~~~~~~~~~l~--------------------------------------------------~l~~L~~L~l~~n~~~ 161 (271)
++|.....+|.... ..++|++|++++|...
T Consensus 712 sgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 712 SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred CCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 65543323222100 0123334444444333
Q ss_pred CccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhc
Q 040280 162 GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIA 241 (271)
Q Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 241 (271)
+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+.
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~ 866 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE 866 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh
Confidence 3444444444444444444443222333332 3444444444444322223321 235666677777666 5667777
Q ss_pred CCCCCCEEeCccC-cccccCccccccCCCC
Q 040280 242 NLSSLRTLFLYNN-GLYGFVPEEIGCCLFP 270 (271)
Q Consensus 242 ~l~~L~~L~l~~n-~l~~~~p~~~~~l~~l 270 (271)
.+++|+.|++++| ++. .+|..+..++.|
T Consensus 867 ~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L 895 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQ-RVSLNISKLKHL 895 (1153)
T ss_pred cCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence 7888888888875 444 567666655554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=9.5e-20 Score=152.47 Aligned_cols=195 Identities=28% Similarity=0.385 Sum_probs=134.1
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCC----------CCCcEEEcc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENL----------KYLSTLDLS 132 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l----------~~L~~L~l~ 132 (271)
.++++++.+|++. .+|+ +++.+..++.++.++|++. .+|++++.+..|++++.+.+.+ -.++.++..
T Consensus 69 ~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 5678888888876 5666 7888888888888888886 5788888888888887765322 234555555
Q ss_pred CCcCCCccccccCC-----------------------CCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccc
Q 040280 133 QNQLSGSISFSLGK-----------------------LSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIP 189 (271)
Q Consensus 133 ~n~~~~~~~~~l~~-----------------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 189 (271)
+|+++ +.|..+.+ |+.|++|+...|.+. .+|+.++.+.+|+-|++..|.+. .+|
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence 55555 34444443 555555555555554 56666666666666666666665 445
Q ss_pred hhccCCCCCCEEEeecCcCCCCCccc-ccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccC
Q 040280 190 LSFGNLNNLTMMSLFSDSLSGSIPPN-LGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCC 267 (271)
Q Consensus 190 ~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 267 (271)
.|.++..|+.++++.|.+. .+|.. ...+.++..||+++|+++ +.|..+.-+.+|.+||+++|.++ .+|.+++++
T Consensus 223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred -CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 4666666666666666665 34443 347778888888888887 66777777888888888888887 678888877
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=5.3e-15 Score=145.56 Aligned_cols=200 Identities=24% Similarity=0.198 Sum_probs=108.8
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLD 130 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~ 130 (271)
.+++.|++.++.+. .++. .+..+++|+.|+++++.....+| .+..+++|++|+++. ..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 35667777777665 3444 56667777777777664444455 366677777777754 3456777777
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcccCcCCCccCcccc-----------------------------------------
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIG----------------------------------------- 169 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~----------------------------------------- 169 (271)
+++|.....+|..+ ++++|++|++++|.....+|....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccc
Confidence 77765444555544 566666666666543322222110
Q ss_pred ---------CCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhh
Q 040280 170 ---------NFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSI 240 (271)
Q Consensus 170 ---------~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~ 240 (271)
..++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-
Confidence 01233334444443333344444445555555554443222334332 3444555555554332233321
Q ss_pred cCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 241 ANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 241 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
..+|+.|++++|.++ .+|.++..++.|
T Consensus 845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L 871 (1153)
T PLN03210 845 --STNISDLNLSRTGIE-EVPWWIEKFSNL 871 (1153)
T ss_pred --ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence 246778888888887 688877777665
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=3.8e-16 Score=133.40 Aligned_cols=197 Identities=23% Similarity=0.195 Sum_probs=140.3
Q ss_pred CCEEEEEcCCCCCcc------ccChhhhCCCCCCcEEECCCCCCcccCchhhccCCC---CCEEecCCC-----------
Q 040280 62 GRVISIDLSSMGLNG------ALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSE---LLHLDLVLE----------- 121 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~~----------- 121 (271)
..++.++++++.+.+ .++. .+..+++|+.|++++|.+.+..+..+..+.. |++|+++.+
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 457888888877652 2333 5667888888888888887656666655555 888888653
Q ss_pred ----CC-CCCcEEEccCCcCCCc----cccccCCCCCCCEEEcccCcCCCc----cCccccCCCCCCEEEccCCcCCCc-
Q 040280 122 ----NL-KYLSTLDLSQNQLSGS----ISFSLGKLSSLDLLYLYSNSFSGS----IPSIIGNFKSLLRLDLSENQLNGS- 187 (271)
Q Consensus 122 ----~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~- 187 (271)
.+ ++|+.|++++|.+++. +...+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+++.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 23 6789999999988842 334566778899999999988732 333455667899999999988643
Q ss_pred ---cchhccCCCCCCEEEeecCcCCCCCccccc-----CCCCCCEEEcccCcCCc----cChhhhcCCCCCCEEeCccCc
Q 040280 188 ---IPLSFGNLNNLTMMSLFSDSLSGSIPPNLG-----NLKSLSTLRLHINQLNG----VISPSIANLSSLRTLFLYNNG 255 (271)
Q Consensus 188 ---~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~ 255 (271)
++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 334556778899999999988752222221 23689999999998873 234556677889999999999
Q ss_pred cccc
Q 040280 256 LYGF 259 (271)
Q Consensus 256 l~~~ 259 (271)
++..
T Consensus 290 l~~~ 293 (319)
T cd00116 290 FGEE 293 (319)
T ss_pred CcHH
Confidence 8754
No 15
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1e-14 Score=134.75 Aligned_cols=153 Identities=33% Similarity=0.459 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcccceeeCCC-----CCEEEEEcCCCCCccccC
Q 040280 5 SSKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCNQV-----GRVISIDLSSMGLNGALQ 79 (271)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~~~~v~~~~~-----~~l~~L~L~~~~~~~~~~ 79 (271)
...|+.||..+|.++... . ..+|. . ..|- +..|.|.|+.|... ..++.|+|+++++.|.+|
T Consensus 370 ~~~~~~aL~~~k~~~~~~--~-~~~W~-----g-----~~C~-p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip 435 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLP--L-RFGWN-----G-----DPCV-PQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP 435 (623)
T ss_pred CchHHHHHHHHHHhcCCc--c-cCCCC-----C-----CCCC-CcccccccceeeccCCCCceEEEEEECCCCCccccCC
Confidence 456899999999988652 1 24797 4 2321 11247999999632 248999999999999999
Q ss_pred hhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCc
Q 040280 80 KFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNS 159 (271)
Q Consensus 80 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 159 (271)
. .+..+++|+.|+|++|.+.+.+|..+..+++ |+.|++++|.+++.+|..++++++|++|++++|.
T Consensus 436 ~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~-------------L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 436 N-DISKLRHLQSINLSGNSIRGNIPPSLGSITS-------------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred H-HHhCCCCCCEEECCCCcccCcCChHHhCCCC-------------CCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 8 8999999999999999999999988876654 5588889999999999999999999999999999
Q ss_pred CCCccCccccCC-CCCCEEEccCCcCC
Q 040280 160 FSGSIPSIIGNF-KSLLRLDLSENQLN 185 (271)
Q Consensus 160 ~~~~~~~~l~~l-~~L~~L~l~~n~~~ 185 (271)
+++.+|..+... .++..+++.+|...
T Consensus 502 l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 502 LSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ccccCChHHhhccccCceEEecCCccc
Confidence 999999887754 45678888887643
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=6.4e-15 Score=137.34 Aligned_cols=173 Identities=21% Similarity=0.397 Sum_probs=82.8
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC--------CCcEEEccCC
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK--------YLSTLDLSQN 134 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~--------~L~~L~l~~n 134 (271)
.++.|+|++|+++ .+|. .+. ++|++|++++|.+.. +|..+. .+|+.|+++.+.+. +|+.|++++|
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~-~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELK-SLPE-NLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRITELPERLPSALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCC-cCCh-hhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccCcCChhHhCCCCEEECcCC
Confidence 4556666666655 3444 222 356666666666652 444332 34666666554432 3566666666
Q ss_pred cCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcc
Q 040280 135 QLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPP 214 (271)
Q Consensus 135 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 214 (271)
.+. .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.+++ +|.
T Consensus 273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 273 KIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPA 342 (754)
T ss_pred ccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CCh
Confidence 666 3454432 35666666666665 3333221 23444444444443 222221 1344455555554442 333
Q ss_pred cccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 215 NLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 215 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
.+. ++|+.|++++|.+. .+|..+. ++|+.|++++|+++
T Consensus 343 ~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 343 SLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred hhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 222 34555555555544 2333222 34445555555444
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=5.5e-15 Score=137.35 Aligned_cols=186 Identities=24% Similarity=0.205 Sum_probs=107.4
Q ss_pred CCEEEEEcCCCCCccccChhhhC-----------------CCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC
Q 040280 62 GRVISIDLSSMGLNGALQKFAFS-----------------SFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK 124 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 124 (271)
..++.|++++|+++. +|. .+. ....|+.|++++|.+.. +|. ..++|++|+++.+++.
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~-lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPV-LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCcEEEecCCccCc-ccC-cccccceeeccCCchhhhhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCccc
Confidence 467777777776653 332 111 11235555565555552 332 1245666666554332
Q ss_pred -------CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCcccc-----------------CCCCCCEEEcc
Q 040280 125 -------YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIG-----------------NFKSLLRLDLS 180 (271)
Q Consensus 125 -------~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L~l~ 180 (271)
+|+.|++++|.++ .+|.. ..+|++|++++|.++ .+|.... ...+|+.|+++
T Consensus 316 ~Lp~lp~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs 390 (788)
T PRK15387 316 SLPALPSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 390 (788)
T ss_pred cCCCCcccccccccccCccc-ccccc---ccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEec
Confidence 2344444555444 22221 124555555555554 2222110 11356777777
Q ss_pred CCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccC
Q 040280 181 ENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFV 260 (271)
Q Consensus 181 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 260 (271)
+|.++ .+|.. .++|+.|++++|.++. +|... .+|+.|++++|.++ .+|..+..+++|+.|++++|++++..
T Consensus 391 ~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 391 GNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 77776 34432 3567777888887773 55432 36778888888887 67888888999999999999999888
Q ss_pred ccccccC
Q 040280 261 PEEIGCC 267 (271)
Q Consensus 261 p~~~~~l 267 (271)
|..+.++
T Consensus 462 ~~~L~~l 468 (788)
T PRK15387 462 LQALREI 468 (788)
T ss_pred HHHHHHH
Confidence 7776544
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=1.1e-15 Score=130.52 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=146.8
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCC---CcEEECCCCCCcc----cCchhhccC-CCCCEEecCCCCC---------
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPH---LMHFNLSFNLFFG----IIPPQVGNL-SELLHLDLVLENL--------- 123 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~~~l--------- 123 (271)
..+++.|+++++.+.+..+. .+..+.. |++|++++|.+.+ .+...+..+ ++|++|+++.+.+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 45899999999999765544 5554444 9999999998873 334456677 8999999987544
Q ss_pred ------CCCcEEEccCCcCCCc----cccccCCCCCCCEEEcccCcCCCc----cCccccCCCCCCEEEccCCcCCCccc
Q 040280 124 ------KYLSTLDLSQNQLSGS----ISFSLGKLSSLDLLYLYSNSFSGS----IPSIIGNFKSLLRLDLSENQLNGSIP 189 (271)
Q Consensus 124 ------~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p 189 (271)
+.|++|++++|.+.+. ++..+..+++|++|++++|.+.+. +...+..+++|++|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 4799999999999842 334556678999999999998633 34456778899999999999885333
Q ss_pred hhcc-----CCCCCCEEEeecCcCCC----CCcccccCCCCCCEEEcccCcCCcc----ChhhhcCC-CCCCEEeCccCc
Q 040280 190 LSFG-----NLNNLTMMSLFSDSLSG----SIPPNLGNLKSLSTLRLHINQLNGV----ISPSIANL-SSLRTLFLYNNG 255 (271)
Q Consensus 190 ~~~~-----~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~l~~n~ 255 (271)
..+. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.+.+. ....+... +.|+++++.+|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2222 24799999999999862 2334456678999999999999855 34445555 789999999886
Q ss_pred c
Q 040280 256 L 256 (271)
Q Consensus 256 l 256 (271)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=4.4e-15 Score=138.43 Aligned_cols=180 Identities=23% Similarity=0.393 Sum_probs=113.8
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC--------CCcEEEccC
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK--------YLSTLDLSQ 133 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~--------~L~~L~l~~ 133 (271)
.+++.|++++|++. .+|. .+. ++|+.|++++|.+. .+|..+. .+|+.|+++.+++. +|+.|++++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~-~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPA-TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPEELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCccc-cCCh-hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccCCCCcEEECCC
Confidence 47889999999887 5665 333 46888888888887 4666554 47888888765443 678888888
Q ss_pred CcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCc
Q 040280 134 NQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP 213 (271)
Q Consensus 134 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 213 (271)
|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++ .+|
T Consensus 293 N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP 362 (754)
T PRK15370 293 NSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLP 362 (754)
T ss_pred Cccc-cCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCC
Confidence 8887 3454332 35677777777766 3444332 46667777777666 345443 256677777777665 345
Q ss_pred ccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcccc
Q 040280 214 PNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264 (271)
Q Consensus 214 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 264 (271)
..+. ++|+.|++++|.++ .+|..+. ..|+.|++++|+++ .+|..+
T Consensus 363 ~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 363 ETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred hhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 4432 46667777777666 3343333 24566666666665 455443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=7.7e-14 Score=129.80 Aligned_cols=184 Identities=24% Similarity=0.278 Sum_probs=107.8
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC-------CCcEEEccCCc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK-------YLSTLDLSQNQ 135 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~-------~L~~L~l~~n~ 135 (271)
.++.|++.+|+++ .+|. ..++|++|++++|.++. +|.. .++|+.|+++.+.+. +|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCc
Confidence 6788999999887 3554 24789999999998884 4532 356777777665443 35666777776
Q ss_pred CCCccccccCCCCCCCEEEcccCcCCCccCccc---c-------------C-CCCCCEEEccCCcCCCccchhccC----
Q 040280 136 LSGSISFSLGKLSSLDLLYLYSNSFSGSIPSII---G-------------N-FKSLLRLDLSENQLNGSIPLSFGN---- 194 (271)
Q Consensus 136 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~-------------~-l~~L~~L~l~~n~~~~~~p~~~~~---- 194 (271)
++ .+|. .+++|++|++++|.+++ +|... . . ..+|+.|++++|+++ .+|.....
T Consensus 294 Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L 367 (788)
T PRK15387 294 LT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKL 367 (788)
T ss_pred cc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCccccee
Confidence 66 3343 23566777777766653 22211 0 1 136778888888777 34432111
Q ss_pred -------------CCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCc
Q 040280 195 -------------LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261 (271)
Q Consensus 195 -------------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 261 (271)
..+|+.|++++|.+++ +|.. .++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|
T Consensus 368 ~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP 438 (788)
T PRK15387 368 WAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLP 438 (788)
T ss_pred hhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccC
Confidence 1234444444444442 3321 1345566666666553 3332 235667777777776 677
Q ss_pred cccccCCCC
Q 040280 262 EEIGCCLFP 270 (271)
Q Consensus 262 ~~~~~l~~l 270 (271)
..++.++.|
T Consensus 439 ~sl~~L~~L 447 (788)
T PRK15387 439 ESLIHLSSE 447 (788)
T ss_pred hHHhhccCC
Confidence 777777665
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-16 Score=146.18 Aligned_cols=128 Identities=32% Similarity=0.402 Sum_probs=103.0
Q ss_pred CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccC-ccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 124 KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIP-SIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
+.|+.|++.+|.+++..-+.+.++++|+.|+|++|.+. .+| ..+.++..|++|+++||.++ .+|..+..+..|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 35677777788888777777888899999999999887 444 46678888999999999998 7888888999999999
Q ss_pred eecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCc
Q 040280 203 LFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNG 255 (271)
Q Consensus 203 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 255 (271)
..+|.+. .+| .+..++.|+.+|++.|.++...-..-...++|++||++||.
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999887 577 57888999999999998875433222233899999999996
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-15 Score=127.96 Aligned_cols=197 Identities=26% Similarity=0.270 Sum_probs=148.3
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCC-CCCcccCchhhccCCCCCEEecCC-----------CCCCCCc
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSF-NLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLS 127 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~ 127 (271)
...++++|||++|+|...-|+ +|..++.+.+|.+.+ |.|+......|.++..|+.|.+.- ..++++.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred chhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 345899999999999866666 999999988877666 899877677888888888887743 4556677
Q ss_pred EEEccCCcCCCccccccCCCCCCCEEEcccCcCC----------------------------------------------
Q 040280 128 TLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFS---------------------------------------------- 161 (271)
Q Consensus 128 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~---------------------------------------------- 161 (271)
.|.+.+|.+...-...|..+..++++.+..|.+.
T Consensus 168 lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 168 LLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred hhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence 7777777766332235666666666655444310
Q ss_pred ---------------CccC-ccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEE
Q 040280 162 ---------------GSIP-SIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTL 225 (271)
Q Consensus 162 ---------------~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 225 (271)
+..| ..|..+++|++|++++|.++.+-+.+|.....++.|.+..|++...-...|.++..|+.|
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTL 327 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceee
Confidence 0111 235677889999999999988778888888999999999998875445567888889999
Q ss_pred EcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 226 RLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
+|.+|+|+-..|.+|..+.+|.+|++-.|++.
T Consensus 328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999998777888888888899988888764
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-15 Score=139.33 Aligned_cols=189 Identities=31% Similarity=0.426 Sum_probs=133.1
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC----------CCCCCCcEEEcc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL----------ENLKYLSTLDLS 132 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------~~l~~L~~L~l~ 132 (271)
+++.++++++++. .+|. -+..+.+|+.++..+|.+. .+|..+...++|+.|.... .+++.|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~-wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPE-WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchH-HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 4555555555554 3443 4555556666666555553 3455555555555544432 345677888888
Q ss_pred CCcCCCcccccc--------------------------CCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC
Q 040280 133 QNQLSGSISFSL--------------------------GKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG 186 (271)
Q Consensus 133 ~n~~~~~~~~~l--------------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (271)
.|.+. .+|+.+ ..++.|+.|++.+|.++...-+.+....+|+.|++++|++..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 88776 333221 123467777888888876666678888899999999999884
Q ss_pred ccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 187 SIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 187 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
.....+.++..|+.|++++|.++ .+|..+..++.|++|...+|.+. .+| .+..++.|+.+|++.|.++.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 44456678889999999999998 68888888899999999999887 566 78889999999999998874
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=5.5e-14 Score=122.84 Aligned_cols=161 Identities=29% Similarity=0.422 Sum_probs=81.2
Q ss_pred EEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC---------CCcEEEccCCc
Q 040280 65 ISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK---------YLSTLDLSQNQ 135 (271)
Q Consensus 65 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~---------~L~~L~l~~n~ 135 (271)
+..|++.|++. .+|. .+..+-.|+.+.+..|.+. .+|.++.++..|.+++++.+++. -|+.|.+++|.
T Consensus 78 ~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCc
Confidence 44556666654 5555 5666666666777666665 46666666666555555443332 13444444444
Q ss_pred CCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCccc
Q 040280 136 LSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPN 215 (271)
Q Consensus 136 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 215 (271)
++ .+|+.++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++. .+|-.
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 44 44444444444444555554444 34444444444444444444444 333333322 2444455555444 34444
Q ss_pred ccCCCCCCEEEcccCcCC
Q 040280 216 LGNLKSLSTLRLHINQLN 233 (271)
Q Consensus 216 ~~~l~~L~~L~l~~n~i~ 233 (271)
|..|+.|++|-|.+|.+.
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 444445555555544444
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=5.9e-13 Score=108.45 Aligned_cols=170 Identities=26% Similarity=0.249 Sum_probs=127.9
Q ss_pred hhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC----------------------------------CCCCCCc
Q 040280 82 AFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL----------------------------------ENLKYLS 127 (271)
Q Consensus 82 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------------------~~l~~L~ 127 (271)
.+.-+++|+++.++.|.-.. +.+-...-|.|+.+.+.+ .....|+
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred chHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 56667888888888875432 222222335556555422 2334789
Q ss_pred EEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCc
Q 040280 128 TLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDS 207 (271)
Q Consensus 128 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 207 (271)
++++++|.|+ .+.++..-.+.++.|+++.|.+. .+. .++.+++|+.|++++|.++ .+..+-.++.++++|.++.|.
T Consensus 288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 9999999998 66677777899999999999987 443 4888999999999999988 566666688899999999998
Q ss_pred CCCCCcccccCCCCCCEEEcccCcCCccC-hhhhcCCCCCCEEeCccCcccc
Q 040280 208 LSGSIPPNLGNLKSLSTLRLHINQLNGVI-SPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 208 l~~~~p~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
+.. + ..+..+.+|..||+++|+|...- -..++++|-|+.+.|.+|++.+
T Consensus 364 iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 364 IET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred Hhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 763 2 33677889999999999987431 2457889999999999999984
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=1.6e-11 Score=113.67 Aligned_cols=112 Identities=31% Similarity=0.494 Sum_probs=90.7
Q ss_pred CCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEccc
Q 040280 150 LDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHI 229 (271)
Q Consensus 150 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 229 (271)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcCCccChhhhcCC-CCCCEEeCccCcccccCc
Q 040280 230 NQLNGVISPSIANL-SSLRTLFLYNNGLYGFVP 261 (271)
Q Consensus 230 n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p 261 (271)
|.+++.+|..+... .++..+++.+|......|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 88888888877653 456778888886544444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=7.6e-12 Score=110.21 Aligned_cols=170 Identities=38% Similarity=0.510 Sum_probs=112.2
Q ss_pred CCCCcEEECCCCCCcccCchhhccCC-CCCEEecCC----------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEE
Q 040280 86 FPHLMHFNLSFNLFFGIIPPQVGNLS-ELLHLDLVL----------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLY 154 (271)
Q Consensus 86 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~----------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 154 (271)
++.++.|++.+|.+.. ++.....+. +|+.|+++. ..+++|+.|++++|++. .++......+.|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCccccc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 3445555555555542 333333332 444444433 34456677778888877 5555555778888888
Q ss_pred cccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCc
Q 040280 155 LYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNG 234 (271)
Q Consensus 155 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~ 234 (271)
+++|.+. .+|........|+++.+++|... ..+..+.++.++..+.+.+|++. .++..++.+++++.|++++|.++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence 8888887 66665555566888888888544 45666677778888887777766 335567777788888888888874
Q ss_pred cChhhhcCCCCCCEEeCccCcccccCcc
Q 040280 235 VISPSIANLSSLRTLFLYNNGLYGFVPE 262 (271)
Q Consensus 235 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 262 (271)
... ++...+++.|++++|.++...|.
T Consensus 270 i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 270 ISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccc--ccccCccCEEeccCccccccchh
Confidence 433 77778888888888887755443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=4.3e-13 Score=117.32 Aligned_cols=191 Identities=30% Similarity=0.391 Sum_probs=142.6
Q ss_pred EEEcCCCCCccccChhhh-CCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC----------CCCCCCcEEEccCC
Q 040280 66 SIDLSSMGLNGALQKFAF-SSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL----------ENLKYLSTLDLSQN 134 (271)
Q Consensus 66 ~L~L~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------~~l~~L~~L~l~~n 134 (271)
++.|++..+. ..|...+ -.+..-...|++.|.+. .+|..+..+..|+.+.+.. ..+..|++++++.|
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 3445555443 2332122 23555677889999987 5787777666666655543 55667888888888
Q ss_pred cCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcc
Q 040280 135 QLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPP 214 (271)
Q Consensus 135 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 214 (271)
+++ .+|..++.+ -|+.|-+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+. .+|.
T Consensus 132 qlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 132 QLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred hhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 888 677766654 4788888888887 78888887788888888888887 67778888888999988888887 4666
Q ss_pred cccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcccccc
Q 040280 215 NLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGC 266 (271)
Q Consensus 215 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 266 (271)
.+..+ .|..||++.|++. .+|-.|.++..|++|-|.+|++. .-|..+|.
T Consensus 207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 66655 4889999999988 77888999999999999999987 66766653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3.4e-11 Score=93.05 Aligned_cols=122 Identities=31% Similarity=0.334 Sum_probs=42.0
Q ss_pred CCcEEEccCCcCCCccccccC-CCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhc-cCCCCCCEEE
Q 040280 125 YLSTLDLSQNQLSGSISFSLG-KLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSF-GNLNNLTMMS 202 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~ 202 (271)
.+++|++++|.|+. + +.++ .+.+|+.|++++|.++ .+ +.+..+++|++|++++|+++. +...+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 34556666666652 2 2343 3566777777777776 33 346667777777777777763 33333 3467777777
Q ss_pred eecCcCCCCC-cccccCCCCCCEEEcccCcCCccC---hhhhcCCCCCCEEeC
Q 040280 203 LFSDSLSGSI-PPNLGNLKSLSTLRLHINQLNGVI---SPSIANLSSLRTLFL 251 (271)
Q Consensus 203 l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l 251 (271)
+++|.+...- -..+..+++|+.|++.+|.++... ...+..+|+|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777765321 133566777888888888776432 233566778887764
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=9.5e-11 Score=103.27 Aligned_cols=172 Identities=34% Similarity=0.436 Sum_probs=131.4
Q ss_pred EEECCCCCCcccCchhhccCCCCCEEecCC----------CCCC-CCcEEEccCCcCCCccccccCCCCCCCEEEcccCc
Q 040280 91 HFNLSFNLFFGIIPPQVGNLSELLHLDLVL----------ENLK-YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNS 159 (271)
Q Consensus 91 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 159 (271)
.+++..+.+.. ....+..++.++.|++.. .... +|+.|++++|.+. .++..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 57888777642 344555667788888854 2332 7899999999998 566678889999999999999
Q ss_pred CCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhh
Q 040280 160 FSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPS 239 (271)
Q Consensus 160 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~ 239 (271)
+. .+|...+..+.|+.|++++|.+. .+|........|+.+.+++|.+. ..+..+..+..+..+.+.+|++.. .+..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence 98 66666668889999999999998 67766556667999999999644 345567778888888888998873 3677
Q ss_pred hcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 240 IANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
++.+++++.|++++|+++ .++. ++.+..+
T Consensus 251 ~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l 279 (394)
T COG4886 251 IGNLSNLETLDLSNNQIS-SISS-LGSLTNL 279 (394)
T ss_pred hccccccceecccccccc-cccc-ccccCcc
Confidence 888889999999999998 5554 5554443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=3.3e-11 Score=99.93 Aligned_cols=174 Identities=20% Similarity=0.192 Sum_probs=115.6
Q ss_pred hCCCCCCcEEECCCCCCcccCch----hhccCCCCCEEecCC------------------------CCCCCCcEEEccCC
Q 040280 83 FSSFPHLMHFNLSFNLFFGIIPP----QVGNLSELLHLDLVL------------------------ENLKYLSTLDLSQN 134 (271)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~------------------------~~l~~L~~L~l~~n 134 (271)
+...++|++|+||+|.+....+. -+..+..|++|.+.. ..-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33456677777777766533332 244566677766644 22356788888777
Q ss_pred cCCCc----cccccCCCCCCCEEEcccCcCCC----ccCccccCCCCCCEEEccCCcCCCc----cchhccCCCCCCEEE
Q 040280 135 QLSGS----ISFSLGKLSSLDLLYLYSNSFSG----SIPSIIGNFKSLLRLDLSENQLNGS----IPLSFGNLNNLTMMS 202 (271)
Q Consensus 135 ~~~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~ 202 (271)
.+... +...|...+.|+++.+..|.+.. .+...+..+++|+.|++.+|.++.. +...+..++.|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 77632 22345667788888888887751 2334677888899999988888742 344556678888888
Q ss_pred eecCcCCCCCcccc-----cCCCCCCEEEcccCcCCcc----ChhhhcCCCCCCEEeCccCcc
Q 040280 203 LFSDSLSGSIPPNL-----GNLKSLSTLRLHINQLNGV----ISPSIANLSSLRTLFLYNNGL 256 (271)
Q Consensus 203 l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l 256 (271)
+++|.+...-...+ ...+.|+.|.+.+|.|+.. +...+...+.|..|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88888864333222 3467889999999988742 233455678888899999988
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.1e-10 Score=88.65 Aligned_cols=111 Identities=29% Similarity=0.372 Sum_probs=43.8
Q ss_pred cCCCCCCCEEEcccCcCCCccCcccc-CCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccc-cCCCC
Q 040280 144 LGKLSSLDLLYLYSNSFSGSIPSIIG-NFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL-GNLKS 221 (271)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~ 221 (271)
+.+..++++|++.+|.++ .+ +.++ .+.+|+.|++++|.++ .+. .+..++.|++|++++|.++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 445668999999999998 33 3455 5789999999999998 443 47789999999999999985 43334 46899
Q ss_pred CCEEEcccCcCCccC-hhhhcCCCCCCEEeCccCccccc
Q 040280 222 LSTLRLHINQLNGVI-SPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 222 L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
|++|++++|+|.+.- -..++.+++|+.|++.+|+++..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 999999999997532 25677899999999999999843
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.8e-11 Score=103.01 Aligned_cols=194 Identities=24% Similarity=0.270 Sum_probs=92.3
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcc--cCchhhccCCCCCEEecCCCC------------CCCCcE
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFG--IIPPQVGNLSELLHLDLVLEN------------LKYLST 128 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~~~------------l~~L~~ 128 (271)
.++.+.|.+....-.-.......+++++.|||+.|-+.. .+..-...+++|+.|+++.+. ++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 445555555544211100134556666666666664442 122233456666666665432 234556
Q ss_pred EEccCCcCCCc-cccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccc--hhccCCCCCCEEEeec
Q 040280 129 LDLSQNQLSGS-ISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIP--LSFGNLNNLTMMSLFS 205 (271)
Q Consensus 129 L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~ 205 (271)
|.++.|+++.. +-.....+++|+.|++..|...........-+..|++|++++|.+- ..+ ...+.++.|+.|+++.
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence 66666665522 1122334566666666666321121222233455666666666554 222 2334556666666666
Q ss_pred CcCCCC-Cccc-----ccCCCCCCEEEcccCcCCccC-hhhhcCCCCCCEEeCccCccc
Q 040280 206 DSLSGS-IPPN-----LGNLKSLSTLRLHINQLNGVI-SPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 206 n~l~~~-~p~~-----~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~ 257 (271)
+.+... +|+. ...+++|++|++..|++.+.. -..+..+++|+.|.+..|.++
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 655431 1211 234456666666666664321 122333455555555555554
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.2e-11 Score=101.43 Aligned_cols=173 Identities=26% Similarity=0.213 Sum_probs=127.9
Q ss_pred CCCCCCcEEECCCCCCcccCc-hhhccCCCCCEEecCC-------------CCCCCCcEEEccCCcCCCccccc-cCCCC
Q 040280 84 SSFPHLMHFNLSFNLFFGIIP-PQVGNLSELLHLDLVL-------------ENLKYLSTLDLSQNQLSGSISFS-LGKLS 148 (271)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-------------~~l~~L~~L~l~~n~~~~~~~~~-l~~l~ 148 (271)
.++.+|+.+.|.++.+..... .....|++++.|+|+. .++|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467789999999988763211 3567899999999976 68899999999999887222211 12468
Q ss_pred CCCEEEcccCcCCC-ccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCc--ccccCCCCCCEE
Q 040280 149 SLDLLYLYSNSFSG-SIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP--PNLGNLKSLSTL 225 (271)
Q Consensus 149 ~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L 225 (271)
+|+.|.++.|+++- .+...+..+|+|+.|++.+|............+..|+.|++++|.+.. .+ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence 99999999999872 233344567999999999995322333344457789999999998863 33 346788999999
Q ss_pred EcccCcCCcc-Chhh-----hcCCCCCCEEeCccCccc
Q 040280 226 RLHINQLNGV-ISPS-----IANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 226 ~l~~n~i~~~-~~~~-----~~~l~~L~~L~l~~n~l~ 257 (271)
+++.+.+... .|+. .-..++|++|++..|++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 9999998753 2222 245689999999999985
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1.3e-10 Score=96.51 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=96.9
Q ss_pred CCCEEEEEcCCCCCcc----ccChhhhCCCCCCcEEECCCC---CCcccCch-------hhccCCCCCEEecCC------
Q 040280 61 VGRVISIDLSSMGLNG----ALQKFAFSSFPHLMHFNLSFN---LFFGIIPP-------QVGNLSELLHLDLVL------ 120 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~----~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~-------~~~~l~~L~~L~l~~------ 120 (271)
...++.|+|++|.+.. .+.. .+.+.++|+..++++- .....+|+ ++..+++|++++||.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~-~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAK-VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHH-HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4578889999988743 2333 5667778888887752 22223443 334455566555544
Q ss_pred ---------CCCCCCcEEEccCCcCCCc-------------cccccCCCCCCCEEEcccCcCCC----ccCccccCCCCC
Q 040280 121 ---------ENLKYLSTLDLSQNQLSGS-------------ISFSLGKLSSLDLLYLYSNSFSG----SIPSIIGNFKSL 174 (271)
Q Consensus 121 ---------~~l~~L~~L~l~~n~~~~~-------------~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L 174 (271)
.++..|++|.+.+|.+... .......-++|+++...+|++.. .+...|+..+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 2334555555555554411 01112233455555555555431 122234444555
Q ss_pred CEEEccCCcCCC----ccchhccCCCCCCEEEeecCcCCCC----CcccccCCCCCCEEEcccCcCCccChhhh-----c
Q 040280 175 LRLDLSENQLNG----SIPLSFGNLNNLTMMSLFSDSLSGS----IPPNLGNLKSLSTLRLHINQLNGVISPSI-----A 241 (271)
Q Consensus 175 ~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~i~~~~~~~~-----~ 241 (271)
+.+.+..|.+.. .+...+..++.|+.|++.+|.++.. +...++.+++|+.|++++|.+.......+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 555555555431 1123344555555555555554321 12234445555555555555543322221 1
Q ss_pred CCCCCCEEeCccCccc
Q 040280 242 NLSSLRTLFLYNNGLY 257 (271)
Q Consensus 242 ~l~~L~~L~l~~n~l~ 257 (271)
..++|+.+.+.+|.++
T Consensus 268 ~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEIT 283 (382)
T ss_pred cCCCCceeccCcchhH
Confidence 2355556666555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=3.2e-10 Score=92.73 Aligned_cols=117 Identities=24% Similarity=0.255 Sum_probs=92.9
Q ss_pred CCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEc
Q 040280 148 SSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRL 227 (271)
Q Consensus 148 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 227 (271)
..|+++|+++|.++ .+.++..-.|.++.|+++.|.+. .+ +.++.+++|+.|++++|.++ .+..+-..+.+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 47889999999998 77788888899999999999987 33 33778999999999999887 45566667788999999
Q ss_pred ccCcCCccChhhhcCCCCCCEEeCccCccccc-CccccccCCCC
Q 040280 228 HINQLNGVISPSIANLSSLRTLFLYNNGLYGF-VPEEIGCCLFP 270 (271)
Q Consensus 228 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~l 270 (271)
++|.+... ..+..+-+|..||+++|++..- --..+|++|.|
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 99998643 5567778899999999998631 12466666654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.7e-09 Score=68.90 Aligned_cols=59 Identities=36% Similarity=0.459 Sum_probs=30.0
Q ss_pred CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCc
Q 040280 125 YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQ 183 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 183 (271)
+|++|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333445555555555555555554444455555555555555554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.2e-09 Score=69.60 Aligned_cols=60 Identities=37% Similarity=0.480 Sum_probs=34.4
Q ss_pred CCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcc
Q 040280 197 NLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256 (271)
Q Consensus 197 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 256 (271)
+|++|++++|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555655555533334555566666666666666555555566666666666666653
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.70 E-value=1.2e-08 Score=82.55 Aligned_cols=140 Identities=19% Similarity=0.121 Sum_probs=101.2
Q ss_pred CCCCCCcEEEccCCcCCCcccc----ccCCCCCCCEEEcccCcCCC----ccC---------ccccCCCCCCEEEccCCc
Q 040280 121 ENLKYLSTLDLSQNQLSGSISF----SLGKLSSLDLLYLYSNSFSG----SIP---------SIIGNFKSLLRLDLSENQ 183 (271)
Q Consensus 121 ~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~----~~~---------~~l~~l~~L~~L~l~~n~ 183 (271)
-++|.|+.++++.|-+....|+ .++..+.|.+|.+++|++.- .+. ....+-|.|+.+....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4678888999999999877665 45677899999999998741 111 122355789999999999
Q ss_pred CCCcc----chhccCCCCCCEEEeecCcCCCCCc-----ccccCCCCCCEEEcccCcCCcc----ChhhhcCCCCCCEEe
Q 040280 184 LNGSI----PLSFGNLNNLTMMSLFSDSLSGSIP-----PNLGNLKSLSTLRLHINQLNGV----ISPSIANLSSLRTLF 250 (271)
Q Consensus 184 ~~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p-----~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~ 250 (271)
+..-. ...+.....|+.+.+..|.|+..-. ..+..+.+|+.||+++|-++-. +...++.++.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 86321 1233344689999999998874311 1235678999999999988732 345667888899999
Q ss_pred CccCcccccC
Q 040280 251 LYNNGLYGFV 260 (271)
Q Consensus 251 l~~n~l~~~~ 260 (271)
+.+|-++..-
T Consensus 249 lnDClls~~G 258 (388)
T COG5238 249 LNDCLLSNEG 258 (388)
T ss_pred ccchhhcccc
Confidence 9999876544
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=4.2e-10 Score=101.58 Aligned_cols=168 Identities=28% Similarity=0.259 Sum_probs=113.2
Q ss_pred hhCCCCCCcEEECCCCCCcccCchhhccC-CCCCEEecCC-------------------CCCCCCcEEEccCCcCCCccc
Q 040280 82 AFSSFPHLMHFNLSFNLFFGIIPPQVGNL-SELLHLDLVL-------------------ENLKYLSTLDLSQNQLSGSIS 141 (271)
Q Consensus 82 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~-------------------~~l~~L~~L~l~~n~~~~~~~ 141 (271)
.+..+..|++|.+.++.+.. ...+..+ .+|++|.-.. -..-.|.+.++++|.+. .+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred eeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 55667889999999988763 1112121 1233332211 11224666677777776 555
Q ss_pred cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCC
Q 040280 142 FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221 (271)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 221 (271)
.++.-++.++.|+|++|.++ .+ +.+..++.|++|++++|.+. .+|..-..-.+|+.|.+.+|.++. + ..+.++++
T Consensus 181 ~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHhhhh
Confidence 66777788999999999987 33 26788899999999999988 455432222349999999998873 2 23778889
Q ss_pred CCEEEcccCcCCccC-hhhhcCCCCCCEEeCccCccc
Q 040280 222 LSTLRLHINQLNGVI-SPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 222 L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~ 257 (271)
|+.||+++|-+.+.- -..+..+..|+.|+|.||++-
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999876531 123445677888899998874
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.46 E-value=3.5e-07 Score=53.65 Aligned_cols=42 Identities=40% Similarity=0.912 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcccceeeC
Q 040280 6 SKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCN 59 (271)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~~~~v~~~ 59 (271)
..|++||++||+++..++...+.+|. . .. ..++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~-----~-----~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN-----P-----SS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT-------T-----T----S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC-----C-----cC--CCCCeeeccEEeC
Confidence 57999999999999986778899998 4 20 1289999999995
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=1.2e-08 Score=90.41 Aligned_cols=183 Identities=27% Similarity=0.281 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC---------CCCCCcEEEccCC
Q 040280 64 VISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE---------NLKYLSTLDLSQN 134 (271)
Q Consensus 64 l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~---------~l~~L~~L~l~~n 134 (271)
+..+++..|.+.. +.. .+..+++++.|++.+|.|..+. ..+..+++|++|+++++ .++.|+.|++++|
T Consensus 74 l~~l~l~~n~i~~-~~~-~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILN-HLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhh-hhc-ccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence 3444455555543 111 3566777777777777776432 22555666666666553 2334566666666
Q ss_pred cCCCccccccCCCCCCCEEEcccCcCCCccCcc-ccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCc
Q 040280 135 QLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSI-IGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP 213 (271)
Q Consensus 135 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 213 (271)
.+.. ...+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-+
T Consensus 151 ~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 151 LISD--ISGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cchh--ccCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC
Confidence 6652 1233446666666666666652222 1 34556666666666665421 112222333333444444432111
Q ss_pred ccccCCCC--CCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 214 PNLGNLKS--LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 214 ~~~~~l~~--L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
+..+.. |+.+++.+|.+... +..+..+..+..+++.+|++.
T Consensus 226 --l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 226 --LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred --cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence 111222 56666666666522 234445556666666666554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.1e-09 Score=85.59 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=29.1
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEec
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDL 118 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 118 (271)
+++.+||+...++..--...++.+.+|+.|.+.++.+...+...++.-.+|+.|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnl 241 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNL 241 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecc
Confidence 45555555555543222213445555666666666665555555555555555554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=4.3e-07 Score=86.88 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=13.7
Q ss_pred hhhcCCCCCCEEeCccCccc
Q 040280 238 PSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 238 ~~~~~l~~L~~L~l~~n~l~ 257 (271)
..+..+.+|+.|.+.++...
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccccccCcceEEEEcCCCc
Confidence 44556677777777777765
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=1.7e-08 Score=73.47 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=73.7
Q ss_pred CCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccC-CCCCCCEEEcccCcCCCccCc
Q 040280 88 HLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLG-KLSSLDLLYLYSNSFSGSIPS 166 (271)
Q Consensus 88 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~ 166 (271)
.+..++|+.|++- .+++.+..+.... .|+..++++|.+. .+|+.|. .++.++++++++|.++ .+|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~----------el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPe 94 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGY----------ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPE 94 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCc----------eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchH
Confidence 4555677777664 3555555544322 3456777777777 4555544 3457788888888887 7777
Q ss_pred cccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCC
Q 040280 167 IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLS 209 (271)
Q Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 209 (271)
.+..++.|+.|++..|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 95 E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7888888888888888877 66777777777777777777665
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.3e-07 Score=77.55 Aligned_cols=186 Identities=19% Similarity=0.170 Sum_probs=105.5
Q ss_pred CEEEEEcCCCCCcc--ccChhhhCCCCCCcEEECCCCCCcccCchhh-ccCCCCCEEecCC------------CCCCCCc
Q 040280 63 RVISIDLSSMGLNG--ALQKFAFSSFPHLMHFNLSFNLFFGIIPPQV-GNLSELLHLDLVL------------ENLKYLS 127 (271)
Q Consensus 63 ~l~~L~L~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~------------~~l~~L~ 127 (271)
+|+.+||.+|.++. .+.. .+.++|.|++|+++.|++...+- ++ ..+.+|+.|-|.+ ..+|.++
T Consensus 72 ~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 78889999998863 3434 56789999999999998874332 22 3456677666644 3445566
Q ss_pred EEEccCCcCCCcc--ccccCC-CCCCCEEEcccCcCCC--ccCccccCCCCCCEEEccCCcCCCc-cchhccCCCCCCEE
Q 040280 128 TLDLSQNQLSGSI--SFSLGK-LSSLDLLYLYSNSFSG--SIPSIIGNFKSLLRLDLSENQLNGS-IPLSFGNLNNLTMM 201 (271)
Q Consensus 128 ~L~l~~n~~~~~~--~~~l~~-l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L 201 (271)
.|+++.|++.... ...... .+.++++.+..|...- ..-..-..++++..+-+..|.+... .-..+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 6666666433111 111111 1244444444443220 0001112335666666666655432 12334456667777
Q ss_pred EeecCcCCCCC-cccccCCCCCCEEEcccCcCCccChh------hhcCCCCCCEEe
Q 040280 202 SLFSDSLSGSI-PPNLGNLKSLSTLRLHINQLNGVISP------SIANLSSLRTLF 250 (271)
Q Consensus 202 ~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~ 250 (271)
+++.+++.... -+.+..++.|..|.+.++.+.+.+.. .++.+++++.|+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 88887775322 23467778888888888877654321 245667777664
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=7.5e-08 Score=85.44 Aligned_cols=96 Identities=30% Similarity=0.308 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC---------CCCCCcEEEc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE---------NLKYLSTLDL 131 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~---------~l~~L~~L~l 131 (271)
...++.+++.+|.+.+.- . .+..+++|++|++++|.|.... .+..++.|+.|+++.+ .++.|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~-~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIE-N-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcc-c-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 457899999999997533 2 2778999999999999998543 3566777999999763 3567899999
Q ss_pred cCCcCCCccc-cccCCCCCCCEEEcccCcCC
Q 040280 132 SQNQLSGSIS-FSLGKLSSLDLLYLYSNSFS 161 (271)
Q Consensus 132 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 161 (271)
++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 9999984433 2 567888888889888875
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.9e-08 Score=79.95 Aligned_cols=165 Identities=21% Similarity=0.186 Sum_probs=106.8
Q ss_pred CCcEEECCCCCCcc-cCchhhccCCCCCEEecCCC-----------CCCCCcEEEccCCc-CCC-ccccccCCCCCCCEE
Q 040280 88 HLMHFNLSFNLFFG-IIPPQVGNLSELLHLDLVLE-----------NLKYLSTLDLSQNQ-LSG-SISFSLGKLSSLDLL 153 (271)
Q Consensus 88 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~-----------~l~~L~~L~l~~n~-~~~-~~~~~l~~l~~L~~L 153 (271)
.|+.|||++..|+. ..-..+..|.+|+.|.+.+. +-.+|+.|+++.+. ++. ...-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48889999877762 23445677888888888763 33578899988754 331 122346778899999
Q ss_pred EcccCcCCCccCc-cccCC-CCCCEEEccCCcCC---CccchhccCCCCCCEEEeecCc-CCCCCcccccCCCCCCEEEc
Q 040280 154 YLYSNSFSGSIPS-IIGNF-KSLLRLDLSENQLN---GSIPLSFGNLNNLTMMSLFSDS-LSGSIPPNLGNLKSLSTLRL 227 (271)
Q Consensus 154 ~l~~n~~~~~~~~-~l~~l-~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l 227 (271)
++++|......-. .+.+. ++|..|+++|++-. ..+.-....+++|.+||+++|- ++......+..++-|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 9999987533211 11222 46778888877632 1222233467888888888864 34333344667778888888
Q ss_pred ccCcCCccChhh---hcCCCCCCEEeCccC
Q 040280 228 HINQLNGVISPS---IANLSSLRTLFLYNN 254 (271)
Q Consensus 228 ~~n~i~~~~~~~---~~~l~~L~~L~l~~n 254 (271)
+.|-. .+|.. +...|.|.+|++.|+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 88753 34443 445678888887665
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.16 E-value=1.6e-06 Score=83.01 Aligned_cols=128 Identities=33% Similarity=0.375 Sum_probs=94.6
Q ss_pred CCCCcEEEccCCc--CCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCE
Q 040280 123 LKYLSTLDLSQNQ--LSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTM 200 (271)
Q Consensus 123 l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 200 (271)
.+.|++|-+..|. +.......|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..+.++.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3467788887775 44233344777999999999988766789999999999999999999888 78999999999999
Q ss_pred EEeecCcCCCCCcccccCCCCCCEEEcccCcCC--ccChhhhcCCCCCCEEeC
Q 040280 201 MSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLN--GVISPSIANLSSLRTLFL 251 (271)
Q Consensus 201 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l 251 (271)
|++..+.....+|.....+.+|++|.+..-... ...-..+..+.+|+.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999887765556676777889999988766422 222334455555555554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1e-07 Score=69.45 Aligned_cols=135 Identities=24% Similarity=0.241 Sum_probs=88.3
Q ss_pred CcEEEccCCcCCCcccc---ccCCCCCCCEEEcccCcCCCccCccccC-CCCCCEEEccCCcCCCccchhccCCCCCCEE
Q 040280 126 LSTLDLSQNQLSGSISF---SLGKLSSLDLLYLYSNSFSGSIPSIIGN-FKSLLRLDLSENQLNGSIPLSFGNLNNLTMM 201 (271)
Q Consensus 126 L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 201 (271)
+..++++.+++- -+++ .+.....|+.+++++|.+. .+|+.|.. .+.++.+++++|.+. .+|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445667766655 2232 3455567777888888887 56665554 457888888888887 677778888888888
Q ss_pred EeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccc
Q 040280 202 SLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265 (271)
Q Consensus 202 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 265 (271)
++..|.+. ..|..+..+.++-.|+..+|... +++-.+-.-......++.++++.+.-|..+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 88888887 45666666777888888888766 3343332222333345566666665554443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=7.3e-06 Score=63.74 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCcc-chhccCCCCCCEEEe
Q 040280 125 YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSI-PLSFGNLNNLTMMSL 203 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l 203 (271)
+...+++++|.+-. -..|..++.|.+|.+++|+++...|.--.-+++|+.|.+.+|.+.... -..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455555555541 123445566666666666665333332223455666666666554210 112334556666666
Q ss_pred ecCcCCCCCc---ccccCCCCCCEEEccc
Q 040280 204 FSDSLSGSIP---PNLGNLKSLSTLRLHI 229 (271)
Q Consensus 204 ~~n~l~~~~p---~~~~~l~~L~~L~l~~ 229 (271)
-+|.+...-- -.+..+++|+.||+++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 5555432110 1234455566665543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=4.3e-06 Score=49.17 Aligned_cols=36 Identities=39% Similarity=0.560 Sum_probs=21.8
Q ss_pred CCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
+|++|++++|+|++ +|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 56666666666663 3445666667777777776665
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=2.4e-07 Score=84.28 Aligned_cols=166 Identities=22% Similarity=0.169 Sum_probs=111.0
Q ss_pred CCCCcEEECCCCCCcccC-chhhccCCCCCEEecCCCCCC----------CCcEEEccCCcCCC---cccc---ccCC--
Q 040280 86 FPHLMHFNLSFNLFFGII-PPQVGNLSELLHLDLVLENLK----------YLSTLDLSQNQLSG---SISF---SLGK-- 146 (271)
Q Consensus 86 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~----------~L~~L~l~~n~~~~---~~~~---~l~~-- 146 (271)
+++++.|.+-...-.+.. |..+..+.+|++|.+....+. +|++| +..|.+.. .+.. .+.+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccch
Confidence 445555555443222222 556667777777777664443 23333 22232220 0111 1111
Q ss_pred -CCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEE
Q 040280 147 -LSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTL 225 (271)
Q Consensus 147 -l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 225 (271)
-..|.+.+++.|.+. .+.+++.-++.++.|+++.|+++.+ +.+..+++|++||++.|.++ .+|..-..-.+|..|
T Consensus 162 ~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheee
Confidence 136778888889887 6778888899999999999999843 36788999999999999998 566532222359999
Q ss_pred EcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 226 RLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
.+++|.++.. ..+.++.+|+.||+++|-+.+
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhc
Confidence 9999998744 457789999999999998764
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=2.6e-06 Score=69.20 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=9.2
Q ss_pred CCEEEEEcCCCCCc
Q 040280 62 GRVISIDLSSMGLN 75 (271)
Q Consensus 62 ~~l~~L~L~~~~~~ 75 (271)
..++.++|++|.|.
T Consensus 30 d~~~evdLSGNtig 43 (388)
T COG5238 30 DELVEVDLSGNTIG 43 (388)
T ss_pred cceeEEeccCCccc
Confidence 45677777777664
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=1.1e-05 Score=47.45 Aligned_cols=34 Identities=38% Similarity=0.562 Sum_probs=12.5
Q ss_pred CcEEEccCCcCCCccccccCCCCCCCEEEcccCcC
Q 040280 126 LSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSF 160 (271)
Q Consensus 126 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 160 (271)
|++|++++|+++ .+|..++++++|++|++++|.+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 334444444444 2232333444444444444433
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=1.1e-05 Score=75.48 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=77.9
Q ss_pred CCCCCCcEEEccCCcCC-CccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC-ccchhccCCCCC
Q 040280 121 ENLKYLSTLDLSQNQLS-GSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG-SIPLSFGNLNNL 198 (271)
Q Consensus 121 ~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L 198 (271)
..+|.|+.|.+++-.+. +.+.....++++|..||+++++++. + .+++++++|+.|.+.+=.+.. ..-..+.++++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 46677888888776654 2233445667888888888888773 3 567788888888776655542 112344578888
Q ss_pred CEEEeecCcCCCCC--c----ccccCCCCCCEEEcccCcCCccChhhh-cCCCCCCEE
Q 040280 199 TMMSLFSDSLSGSI--P----PNLGNLKSLSTLRLHINQLNGVISPSI-ANLSSLRTL 249 (271)
Q Consensus 199 ~~L~l~~n~l~~~~--p----~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L 249 (271)
+.||+|........ . +.-..++.|+.||.+++.+.+.+-+.+ ...++|+.+
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 88888776543211 1 112346788888888887775443332 233444443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=5.9e-06 Score=77.28 Aligned_cols=138 Identities=23% Similarity=0.249 Sum_probs=97.8
Q ss_pred CCCcEEEccCCcCCCc-ccccc-CCCCCCCEEEcccCcCC-CccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCE
Q 040280 124 KYLSTLDLSQNQLSGS-ISFSL-GKLSSLDLLYLYSNSFS-GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTM 200 (271)
Q Consensus 124 ~~L~~L~l~~n~~~~~-~~~~l-~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 200 (271)
.+|++|++++...-.. -+..+ ..+|+|+.|.+++-.+. ..+.....++++|..||+++..++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5788888887554311 12223 34799999999997764 23344556889999999999998843 66788999999
Q ss_pred EEeecCcCCC-CCcccccCCCCCCEEEcccCcCCccC--h----hhhcCCCCCCEEeCccCcccccCccc
Q 040280 201 MSLFSDSLSG-SIPPNLGNLKSLSTLRLHINQLNGVI--S----PSIANLSSLRTLFLYNNGLYGFVPEE 263 (271)
Q Consensus 201 L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~i~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~p~~ 263 (271)
|.+.+=.+.. ..-..+..+++|+.||++..+..... . +....+|+|+.||.+++.++..+-+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 9988766542 11124678999999999988655322 1 22345899999999999887655443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00016 Score=63.12 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=48.9
Q ss_pred hCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccC-cCC
Q 040280 83 FSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSN-SFS 161 (271)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~ 161 (271)
+..+++++.|++++|.+.. +| .+| ++|++|.++++.-...+|..+ .++|++|++++| .+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP----~LP------------~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP----VLP------------NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC----CCC------------CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc
Confidence 5557999999999997763 45 232 246667776543323455444 258999999998 444
Q ss_pred CccCccccCCCCCCEEEccCCcC
Q 040280 162 GSIPSIIGNFKSLLRLDLSENQL 184 (271)
Q Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~ 184 (271)
.+|. .|+.|++..+..
T Consensus 109 -sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 109 -GLPE------SVRSLEIKGSAT 124 (426)
T ss_pred -cccc------ccceEEeCCCCC
Confidence 4553 466777766553
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00014 Score=63.45 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhh
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQV 107 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 107 (271)
..++.|+++++.+. .+|. + -.+|+.|.+++|.-...+|..+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L 92 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSI 92 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchh
Confidence 46789999999776 4442 1 2369999999864434566544
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.64 E-value=0.0002 Score=52.51 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred cCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCC
Q 040280 144 LGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLS 223 (271)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 223 (271)
|.++.+|+.+.+.. .+...-...|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444555555543 233222334444545555555443 3323333444444555555543 22211123344455566
Q ss_pred EEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 224 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
.+++..+ +.......+.++ .++.+.+.. .+...-...|.+|+.|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 6655443 332223344444 556665554 22323334555555553
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=5.9e-05 Score=62.25 Aligned_cols=184 Identities=21% Similarity=0.190 Sum_probs=93.4
Q ss_pred CEEEEEcCCCCCccccChhhh-CCCCCCcEEECCCCCCcc--cCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCc
Q 040280 63 RVISIDLSSMGLNGALQKFAF-SSFPHLMHFNLSFNLFFG--IIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGS 139 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~ 139 (271)
.++.+-+.++.|...=-...| ...+.++.+||.+|.|+. .+..-+.++|.|+.|++ +.|++...
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNl-------------s~N~L~s~ 112 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNL-------------SCNSLSSD 112 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeec-------------cCCcCCCc
Confidence 344455555555321111023 346788899999988862 23334455655555554 44444422
Q ss_pred cccccCCCCCCCEEEcccCcCC-CccCccccCCCCCCEEEccCCcCCCc-----------------------------cc
Q 040280 140 ISFSLGKLSSLDLLYLYSNSFS-GSIPSIIGNFKSLLRLDLSENQLNGS-----------------------------IP 189 (271)
Q Consensus 140 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------------------~p 189 (271)
+...-....+|++|.+.+..+. ......+..+|.+++|.++.|.+... .-
T Consensus 113 I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 113 IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 2111123344555555544432 11222333444444444444421100 00
Q ss_pred hhccCCCCCCEEEeecCcCCCCC-cccccCCCCCCEEEcccCcCCccC-hhhhcCCCCCCEEeCccCccccc
Q 040280 190 LSFGNLNNLTMMSLFSDSLSGSI-PPNLGNLKSLSTLRLHINQLNGVI-SPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 190 ~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
....-.+++..+.+..|.+...- ...+..++.+.-|+++.|.|...- -+.+.+++.|..|.++.|++...
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 00012345566666666553221 223455667778888888876432 24577889999999999988643
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.0002 Score=55.86 Aligned_cols=104 Identities=19% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCcc--
Q 040280 87 PHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSI-- 164 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-- 164 (271)
.+...+||++|.+.. -+.|.. ++.|.+|.+.+|.|+..-|.--..+++|+.|.+.+|.+. .+
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~-------------l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~d 105 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPH-------------LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGD 105 (233)
T ss_pred cccceecccccchhh--cccCCC-------------ccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhh
Confidence 456667777776642 112222 334556777777777544443344566777777777765 21
Q ss_pred CccccCCCCCCEEEccCCcCCCcc---chhccCCCCCCEEEeecC
Q 040280 165 PSIIGNFKSLLRLDLSENQLNGSI---PLSFGNLNNLTMMSLFSD 206 (271)
Q Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~~n 206 (271)
-+.+..++.|+.|.+-+|..+..- -..+-.+++|+.||+..-
T Consensus 106 l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 123556677777777777655211 112335667777776553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00064 Score=49.72 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=6.9
Q ss_pred hhhhCCCCCCcEEECC
Q 040280 80 KFAFSSFPHLMHFNLS 95 (271)
Q Consensus 80 ~~~~~~l~~L~~L~l~ 95 (271)
...|..+++|+.+.+.
T Consensus 5 ~~~F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 5 NNAFYNCSNLESITFP 20 (129)
T ss_dssp TTTTTT-TT--EEEET
T ss_pred HHHHhCCCCCCEEEEC
Confidence 3355555555555554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00014 Score=58.92 Aligned_cols=100 Identities=21% Similarity=0.338 Sum_probs=45.2
Q ss_pred CCCCCEEEcccCcCCCccCccccCCCCCCEEEccCC--cCCCccchhccCCCCCCEEEeecCcCCCCCccc---ccCCCC
Q 040280 147 LSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSEN--QLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPN---LGNLKS 221 (271)
Q Consensus 147 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---~~~l~~ 221 (271)
+..|+.+.+.+..++ .+ ..+..+++|+.|.++.| +..+.++-....+++|+++++++|.+.. +.. +..+.+
T Consensus 42 ~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 344444444444443 11 12344455555555555 3333333333344556666666555542 111 233445
Q ss_pred CCEEEcccCcCCcc---ChhhhcCCCCCCEEe
Q 040280 222 LSTLRLHINQLNGV---ISPSIANLSSLRTLF 250 (271)
Q Consensus 222 L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~ 250 (271)
|..|++.+|..+.. -...|.-+++|++|+
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 55666666654431 112233445555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00072 Score=54.82 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=63.0
Q ss_pred cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecC--cCCCCCcccccCCCCCCEEEcccCcCCcc-ChhhhcCCCC
Q 040280 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSD--SLSGSIPPNLGNLKSLSTLRLHINQLNGV-ISPSIANLSS 245 (271)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~ 245 (271)
-....|+.+.+.+..++. + ..+-.+++|++|.++.| .+++.++.....+++|+++++++|+++.. --..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344566777777777652 2 23447889999999999 66666655556669999999999998841 1123456778
Q ss_pred CCEEeCccCcccc
Q 040280 246 LRTLFLYNNGLYG 258 (271)
Q Consensus 246 L~~L~l~~n~l~~ 258 (271)
|..|++.+|..+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8999999997764
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.78 E-value=0.00045 Score=33.91 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=15.6
Q ss_pred CCCEEeCccCcccccCccccccC
Q 040280 245 SLRTLFLYNNGLYGFVPEEIGCC 267 (271)
Q Consensus 245 ~L~~L~l~~n~l~~~~p~~~~~l 267 (271)
+|++|++++|+++ .+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677888888887 777777654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00012 Score=59.91 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=36.5
Q ss_pred CCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCc--ccccCCCCCCEEE
Q 040280 149 SLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP--PNLGNLKSLSTLR 226 (271)
Q Consensus 149 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~ 226 (271)
+.+.|++.+|++.. + .....++.|+.|.++-|.++..-| +..+++|+.|+|..|.|.. +. ..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 33444444444431 1 123344555555555555542222 3345555555555554442 21 1234555555555
Q ss_pred cccCcCCc
Q 040280 227 LHINQLNG 234 (271)
Q Consensus 227 l~~n~i~~ 234 (271)
|..|.-.+
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 55555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.00035 Score=57.31 Aligned_cols=88 Identities=25% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccC-hhhhcCCCCCCEE
Q 040280 171 FKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVI-SPSIANLSSLRTL 249 (271)
Q Consensus 171 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L 249 (271)
+.+.+.|+..++.++.+ ....+++.|+.|.|+-|.|+..-| +..|+.|++|+|+.|.|.+.- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678899999998742 234589999999999999985433 778899999999999998542 2467899999999
Q ss_pred eCccCcccccCcc
Q 040280 250 FLYNNGLYGFVPE 262 (271)
Q Consensus 250 ~l~~n~l~~~~p~ 262 (271)
.|..|+-.|.-+.
T Consensus 94 WL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 94 WLDENPCCGEAGQ 106 (388)
T ss_pred hhccCCcccccch
Confidence 9999998776653
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.13 E-value=0.002 Score=58.00 Aligned_cols=100 Identities=27% Similarity=0.185 Sum_probs=46.9
Q ss_pred CCCCCcEEECCCC-CCccc-CchhhccCCCCCEEecCC----------------CCCCCCcEEEccCCc-CCCccccccC
Q 040280 85 SFPHLMHFNLSFN-LFFGI-IPPQVGNLSELLHLDLVL----------------ENLKYLSTLDLSQNQ-LSGSISFSLG 145 (271)
Q Consensus 85 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~----------------~~l~~L~~L~l~~n~-~~~~~~~~l~ 145 (271)
..++|+.|.+..+ .+... .-.....++.|+.|+++. ..+++|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566667766655 22211 122334455666555532 223455556655555 4433222222
Q ss_pred C-CCCCCEEEcccCc-CCCc-cCccccCCCCCCEEEccCCcC
Q 040280 146 K-LSSLDLLYLYSNS-FSGS-IPSIIGNFKSLLRLDLSENQL 184 (271)
Q Consensus 146 ~-l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~~ 184 (271)
. +++|++|.+.++. ++.. +-.....++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 4566666655554 3311 111223445566666665543
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.87 E-value=0.015 Score=26.42 Aligned_cols=13 Identities=62% Similarity=0.575 Sum_probs=6.4
Q ss_pred CCCEEeCccCccc
Q 040280 245 SLRTLFLYNNGLY 257 (271)
Q Consensus 245 ~L~~L~l~~n~l~ 257 (271)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666665
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.36 E-value=0.0054 Score=53.15 Aligned_cols=109 Identities=22% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCCCCEEEcccCcC-CCccCccc-cCCCCCCEEEccCCcCCC--ccchhccCCCCCCEEEeecCcCC-CC----Cccccc
Q 040280 147 LSSLDLLYLYSNSF-SGSIPSII-GNFKSLLRLDLSENQLNG--SIPLSFGNLNNLTMMSLFSDSLS-GS----IPPNLG 217 (271)
Q Consensus 147 l~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~-~~----~p~~~~ 217 (271)
..+|+.+.++.+.. +..--..+ .+.+.|+.+++.++.... .+-..-.+++.|+.+.++.+... .. +...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 45666666666552 11000111 234566666666554321 12222336677888888776532 11 011124
Q ss_pred CCCCCCEEEcccCcCC-ccChhhhcCCCCCCEEeCccCc
Q 040280 218 NLKSLSTLRLHINQLN-GVISPSIANLSSLRTLFLYNNG 255 (271)
Q Consensus 218 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~ 255 (271)
.+..++.+.+.+++.. +..-+.+..+++|+.+++.+++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4567778888887643 3344556677888888888874
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.85 E-value=0.0004 Score=62.45 Aligned_cols=186 Identities=24% Similarity=0.236 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCccc----cChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCc
Q 040280 64 VISIDLSSMGLNGA----LQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGS 139 (271)
Q Consensus 64 l~~L~L~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~ 139 (271)
+..++|.+|.+... +.. .+.....|+.|++++|.+.......+.. .+++ .-..+++|.+..|.+++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~-~l~t~~~L~~L~l~~n~l~~~g~~~l~~--~l~~------~~~~l~~L~l~~c~l~~~ 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ-ALKTLPTLGQLDLSGNNLGDEGARLLCE--GLRL------PQCLLQTLELVSCSLTSE 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHH-HhcccccHhHhhcccCCCccHhHHHHHh--hccc------chHHHHHHHhhccccccc
Confidence 45566666666432 212 3455667777777777665322222211 0110 012344555555665532
Q ss_pred ----cccccCCCCCCCEEEcccCcCC----CccCccc----cCCCCCCEEEccCCcCCCc----cchhccCCCC-CCEEE
Q 040280 140 ----ISFSLGKLSSLDLLYLYSNSFS----GSIPSII----GNFKSLLRLDLSENQLNGS----IPLSFGNLNN-LTMMS 202 (271)
Q Consensus 140 ----~~~~l~~l~~L~~L~l~~n~~~----~~~~~~l----~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~-L~~L~ 202 (271)
+...+.....++.++++.|.+. ..++..+ ....++++|.+++|.++.. ....+...+. +..++
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 3344555667777777777763 1122222 3456777788877776521 1122333444 66677
Q ss_pred eecCcCCCC----CcccccCC-CCCCEEEcccCcCCccC----hhhhcCCCCCCEEeCccCcccc
Q 040280 203 LFSDSLSGS----IPPNLGNL-KSLSTLRLHINQLNGVI----SPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 203 l~~n~l~~~----~p~~~~~l-~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
+..|.+.+. ....+..+ ..++.++++.|.+.+.. ...+..++.++++.++.|++..
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 777776532 12223444 56788888888877543 3445566778888888887653
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.76 E-value=0.038 Score=27.46 Aligned_cols=16 Identities=38% Similarity=0.283 Sum_probs=7.1
Q ss_pred CCCCEEeCccCccccc
Q 040280 244 SSLRTLFLYNNGLYGF 259 (271)
Q Consensus 244 ~~L~~L~l~~n~l~~~ 259 (271)
++|++|++++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.58 E-value=0.17 Score=25.57 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=12.0
Q ss_pred CCCCEEeCccCcccccCccc
Q 040280 244 SSLRTLFLYNNGLYGFVPEE 263 (271)
Q Consensus 244 ~~L~~L~l~~n~l~~~~p~~ 263 (271)
++|+.|+|++|++. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45677777777776 45543
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.58 E-value=0.17 Score=25.57 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=12.0
Q ss_pred CCCCEEeCccCcccccCccc
Q 040280 244 SSLRTLFLYNNGLYGFVPEE 263 (271)
Q Consensus 244 ~~L~~L~l~~n~l~~~~p~~ 263 (271)
++|+.|+|++|++. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45677777777776 45543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.48 E-value=0.0022 Score=51.40 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=55.8
Q ss_pred ccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCC
Q 040280 143 SLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSL 222 (271)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 222 (271)
.+......+.||++.|++. .+...|+.++.+..|+++.|.+. ..|..+.....++.++...|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3445566677777777665 34445566666667777777665 56666666666666666666655 456666666667
Q ss_pred CEEEcccCcCC
Q 040280 223 STLRLHINQLN 233 (271)
Q Consensus 223 ~~L~l~~n~i~ 233 (271)
+.+++.+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 76666666544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.52 E-value=0.27 Score=24.75 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=9.0
Q ss_pred CCCcEEECCCCCCcc
Q 040280 87 PHLMHFNLSFNLFFG 101 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~ 101 (271)
++|++|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.52 E-value=0.27 Score=24.75 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=9.0
Q ss_pred CCCcEEECCCCCCcc
Q 040280 87 PHLMHFNLSFNLFFG 101 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~ 101 (271)
++|++|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666654
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.08 E-value=0.047 Score=42.92 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=60.2
Q ss_pred CCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCc-cccc-CCCCCCEEEcccC-cCCccChhhhcCCCCCCE
Q 040280 172 KSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP-PNLG-NLKSLSTLRLHIN-QLNGVISPSIANLSSLRT 248 (271)
Q Consensus 172 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~ 248 (271)
..++.++-++..+....-..+..++.++.|.+.+|.--+.-. +.++ -.++|+.|++++| .|++..-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 357888888888876667777888888998888875322110 1111 3468999999998 588766677888899988
Q ss_pred EeCccCc
Q 040280 249 LFLYNNG 255 (271)
Q Consensus 249 L~l~~n~ 255 (271)
|.+.+=+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8877643
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=0.062 Score=42.29 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=59.2
Q ss_pred CCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCc-cchhc-cCCCCCCEEEeecCc-CCCCCcccccCCCCC
Q 040280 146 KLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGS-IPLSF-GNLNNLTMMSLFSDS-LSGSIPPNLGNLKSL 222 (271)
Q Consensus 146 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~-~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L 222 (271)
.-..++.++-+++.+..+--+.+.+++.++.|.+.++.--+. --+-+ +-.++|+.|++++|. |+..--..+..+++|
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 345688889998888755556677788888888877763211 01111 135789999999875 665444557788889
Q ss_pred CEEEcccCcC
Q 040280 223 STLRLHINQL 232 (271)
Q Consensus 223 ~~L~l~~n~i 232 (271)
+.|.+.+-..
T Consensus 179 r~L~l~~l~~ 188 (221)
T KOG3864|consen 179 RRLHLYDLPY 188 (221)
T ss_pred HHHHhcCchh
Confidence 9888876643
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.84 E-value=0.18 Score=45.39 Aligned_cols=14 Identities=29% Similarity=0.157 Sum_probs=6.9
Q ss_pred CCCCCCEEEcccCc
Q 040280 218 NLKSLSTLRLHINQ 231 (271)
Q Consensus 218 ~l~~L~~L~l~~n~ 231 (271)
.++.|++|+++++.
T Consensus 293 ~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 293 RCPSLRELDLSGCH 306 (482)
T ss_pred hcCcccEEeeecCc
Confidence 34445555555443
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.79 E-value=0.0023 Score=57.62 Aligned_cols=167 Identities=27% Similarity=0.279 Sum_probs=108.3
Q ss_pred CcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcccc----ccCCC-CCCCEEEcccCcCCC-
Q 040280 89 LMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISF----SLGKL-SSLDLLYLYSNSFSG- 162 (271)
Q Consensus 89 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l-~~L~~L~l~~n~~~~- 162 (271)
+..|.+.+|.+.......+... ....+.|+.|++++|.+.+.... .+... +.+++|++..|.+++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~---------l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~ 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQA---------LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHHH---------hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc
Confidence 7778888888875544443321 12335566788888888743222 22232 677888888888763
Q ss_pred ---ccCccccCCCCCCEEEccCCcCCC----ccchhcc----CCCCCCEEEeecCcCCCCC----cccccCCCC-CCEEE
Q 040280 163 ---SIPSIIGNFKSLLRLDLSENQLNG----SIPLSFG----NLNNLTMMSLFSDSLSGSI----PPNLGNLKS-LSTLR 226 (271)
Q Consensus 163 ---~~~~~l~~l~~L~~L~l~~n~~~~----~~p~~~~----~l~~L~~L~l~~n~l~~~~----p~~~~~l~~-L~~L~ 226 (271)
.+.+.+.....++.++++.|.+.. .++..+. ...++++|++.+|.++... ...+...+. +..|+
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 344556667788899999888731 2233333 4778999999999876322 122444455 77799
Q ss_pred cccCcCCccC----hhhhcCC-CCCCEEeCccCcccccCcccc
Q 040280 227 LHINQLNGVI----SPSIANL-SSLRTLFLYNNGLYGFVPEEI 264 (271)
Q Consensus 227 l~~n~i~~~~----~~~~~~l-~~L~~L~l~~n~l~~~~p~~~ 264 (271)
+..|.+.+.. ...+... ..++.++++.|.++..-...+
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 9999987542 2344445 678999999999987655444
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.00 E-value=0.01 Score=47.69 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=48.4
Q ss_pred CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEee
Q 040280 125 YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLF 204 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 204 (271)
..+.||++.|.+- .+-..|+-++.+..|+++.|.+. ..|+.+.....+..++...|..+ ..|.++...+.+++++..
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4445555555544 23344555566666666666665 56666666666666666666555 566666666666666666
Q ss_pred cCcC
Q 040280 205 SDSL 208 (271)
Q Consensus 205 ~n~l 208 (271)
.+.+
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 6654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.26 E-value=0.7 Score=23.48 Aligned_cols=19 Identities=42% Similarity=0.459 Sum_probs=14.5
Q ss_pred CCCCEEeCccCcccccCccc
Q 040280 244 SSLRTLFLYNNGLYGFVPEE 263 (271)
Q Consensus 244 ~~L~~L~l~~n~l~~~~p~~ 263 (271)
++|+.|++++|+++ ++|+-
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 46788888888887 67763
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.05 E-value=2.5 Score=21.46 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=11.6
Q ss_pred CCCCCEEeCccCccc
Q 040280 243 LSSLRTLFLYNNGLY 257 (271)
Q Consensus 243 l~~L~~L~l~~n~l~ 257 (271)
+.+|+.|+++.|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357788888888886
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.82 E-value=1.7 Score=22.36 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=9.0
Q ss_pred CCCCEEEcccCcCCc
Q 040280 220 KSLSTLRLHINQLNG 234 (271)
Q Consensus 220 ~~L~~L~l~~n~i~~ 234 (271)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666653
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=72.44 E-value=2.4 Score=37.39 Aligned_cols=130 Identities=23% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCCCCCcEEEccCCc-CCCcccccc-CCCCCCCEEEcccCcCC--CccCccccCCCCCCEEEccCCcCCCcc-----chh
Q 040280 121 ENLKYLSTLDLSQNQ-LSGSISFSL-GKLSSLDLLYLYSNSFS--GSIPSIIGNFKSLLRLDLSENQLNGSI-----PLS 191 (271)
Q Consensus 121 ~~l~~L~~L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~-----p~~ 191 (271)
.+..+|+.+.++.++ ++..--..+ .+.+.|+.+++.++... +++...-.+.+.|+.+.++.+...... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 344667777776655 221111112 24577888888877643 223333346678888888866532111 111
Q ss_pred ccCCCCCCEEEeecCcCCC-CCcccccCCCCCCEEEcccCc-CCc-cChhhhcCCCCCCEEe
Q 040280 192 FGNLNNLTMMSLFSDSLSG-SIPPNLGNLKSLSTLRLHINQ-LNG-VISPSIANLSSLRTLF 250 (271)
Q Consensus 192 ~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l~~L~~L~ 250 (271)
-..+..|..+.++++.... ..-..+..+++|+.+++-++. ++. .+...-.++|+++..-
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 2245677888888876432 222345667788888887775 222 2222334566666543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.25 E-value=2.6 Score=38.38 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCCCCCEEEccCCcCCCc--cchhccCCCCCCEEEeecC--cCCCCCc-ccccCCCCCCEEEcccCcCCcc
Q 040280 170 NFKSLLRLDLSENQLNGS--IPLSFGNLNNLTMMSLFSD--SLSGSIP-PNLGNLKSLSTLRLHINQLNGV 235 (271)
Q Consensus 170 ~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n--~l~~~~p-~~~~~l~~L~~L~l~~n~i~~~ 235 (271)
+.+.+..+++++|++... +.......++|..|+|++| .+....- ..++. ..|++|.+.||.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 557788888899887632 2333346788999999998 3331100 11232 3588999999988754
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.39 E-value=4.3 Score=37.08 Aligned_cols=68 Identities=24% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCCCCCccc--cChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCC
Q 040280 60 QVGRVISIDLSSMGLNGA--LQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLS 137 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~ 137 (271)
..+.|..++|++|++... +.. .....|+|+.|+|++|...-.....+.++ +...|++|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~~~~~~el~K~-----------k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSKISSESELDKL-----------KGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhH-HHHhcchhheeecccchhhhcchhhhhhh-----------cCCCHHHeeecCCccc
Confidence 345778888888877531 111 23446788888888872221122222222 2234677777777776
Q ss_pred Cc
Q 040280 138 GS 139 (271)
Q Consensus 138 ~~ 139 (271)
..
T Consensus 284 ~t 285 (585)
T KOG3763|consen 284 TT 285 (585)
T ss_pred cc
Confidence 43
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.65 E-value=20 Score=17.72 Aligned_cols=15 Identities=27% Similarity=0.188 Sum_probs=11.3
Q ss_pred CCCCCEEeCccCc-cc
Q 040280 243 LSSLRTLFLYNNG-LY 257 (271)
Q Consensus 243 l~~L~~L~l~~n~-l~ 257 (271)
+++|+.|++++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888884 55
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.86 E-value=51 Score=36.56 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=26.0
Q ss_pred EcCCCCCccccChhhhCCCCCCcEEECCCCCCc
Q 040280 68 DLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFF 100 (271)
Q Consensus 68 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 100 (271)
||++|+|. .++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57888887 677768889999999999988664
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.99 E-value=59 Score=36.13 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=26.7
Q ss_pred EccCCcCCCccchhccCCCCCCEEEeecCcCCC
Q 040280 178 DLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSG 210 (271)
Q Consensus 178 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 210 (271)
+|++|+++...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 478899986667788888999999999987653
Done!