Query 040280
Match_columns 271
No_of_seqs 237 out of 3237
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.2E-38 1.8E-42 266.8 20.8 250 2-270 1-270 (313)
2 4fcg_A Uncharacterized protein 100.0 6.1E-35 2.1E-39 249.5 15.2 254 3-271 23-304 (328)
3 3rgz_A Protein brassinosteroid 100.0 1.1E-33 3.7E-38 266.9 20.9 248 3-270 8-320 (768)
4 4eco_A Uncharacterized protein 100.0 2.9E-34 9.9E-39 265.4 13.9 246 2-267 25-399 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 1.3E-32 4.6E-37 260.2 16.3 246 2-268 264-642 (876)
6 2z66_A Variable lymphocyte rec 100.0 8.8E-30 3E-34 215.2 19.0 225 45-270 1-250 (306)
7 3rgz_A Protein brassinosteroid 100.0 4.2E-29 1.4E-33 235.6 20.0 209 62-271 418-707 (768)
8 1ozn_A Reticulon 4 receptor; N 100.0 2E-28 6.7E-33 205.0 21.2 214 45-259 2-240 (285)
9 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-29 3.8E-34 215.5 13.1 206 61-270 75-293 (313)
10 1xku_A Decorin; proteoglycan, 100.0 5.9E-28 2E-32 206.1 21.7 223 43-270 23-265 (330)
11 3zyi_A Leucine-rich repeat-con 100.0 1E-27 3.5E-32 213.2 21.5 226 43-271 44-293 (452)
12 3zyj_A Leucine-rich repeat-con 100.0 1.5E-27 5.2E-32 211.4 21.2 226 43-271 33-282 (440)
13 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-27 3.9E-32 204.6 19.4 222 43-266 25-286 (332)
14 2o6q_A Variable lymphocyte rec 100.0 3.1E-27 1.1E-31 196.2 20.9 207 49-259 3-220 (270)
15 2id5_A Lingo-1, leucine rich r 100.0 2.6E-27 9.1E-32 211.8 21.8 226 44-270 2-298 (477)
16 3v47_A TOLL-like receptor 5B a 100.0 4.1E-27 1.4E-31 209.1 20.0 82 189-270 292-373 (455)
17 3v47_A TOLL-like receptor 5B a 99.9 2.2E-26 7.5E-31 204.4 20.6 107 165-271 292-398 (455)
18 2z80_A TOLL-like receptor 2, v 99.9 1.4E-26 4.7E-31 199.5 14.6 223 45-271 24-304 (353)
19 4fcg_A Uncharacterized protein 99.9 3E-26 1E-30 195.6 16.1 192 61-257 103-314 (328)
20 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-25 7.9E-30 186.3 21.1 212 55-271 5-228 (285)
21 3t6q_A CD180 antigen; protein- 99.9 4E-25 1.4E-29 203.1 21.1 146 63-209 34-192 (606)
22 2z62_A TOLL-like receptor 4, v 99.9 3.7E-25 1.3E-29 184.2 18.1 197 63-261 29-241 (276)
23 1ziw_A TOLL-like receptor 3; i 99.9 9.3E-25 3.2E-29 203.3 20.8 208 62-270 25-298 (680)
24 2id5_A Lingo-1, leucine rich r 99.9 8.9E-25 3.1E-29 195.4 19.1 210 61-271 79-323 (477)
25 3m19_A Variable lymphocyte rec 99.9 1.1E-24 3.7E-29 179.0 17.9 191 50-259 4-194 (251)
26 3t6q_A CD180 antigen; protein- 99.9 1.7E-24 5.7E-29 199.0 20.0 146 124-269 376-525 (606)
27 3oja_B Anopheles plasmodium-re 99.9 1.2E-24 4.1E-29 199.8 19.0 205 63-270 52-326 (597)
28 3o6n_A APL1; leucine-rich repe 99.9 9.4E-25 3.2E-29 190.4 17.1 122 63-185 46-178 (390)
29 1p9a_G Platelet glycoprotein I 99.9 5.7E-24 1.9E-28 178.4 21.1 194 59-258 7-209 (290)
30 2z66_A Variable lymphocyte rec 99.9 7.9E-25 2.7E-29 184.8 15.9 198 60-259 50-263 (306)
31 3rfs_A Internalin B, repeat mo 99.9 1.4E-24 4.8E-29 180.5 17.0 195 62-268 41-246 (272)
32 2xwt_C Thyrotropin receptor; s 99.9 4.8E-25 1.6E-29 179.7 13.5 211 43-270 2-231 (239)
33 2o6s_A Variable lymphocyte rec 99.9 1.1E-24 3.7E-29 173.9 14.8 189 45-268 1-189 (208)
34 3zyj_A Leucine-rich repeat-con 99.9 4.5E-24 1.5E-28 189.1 19.7 194 61-257 87-292 (440)
35 3zyi_A Leucine-rich repeat-con 99.9 6.5E-24 2.2E-28 188.7 20.1 195 60-257 97-303 (452)
36 3oja_A Leucine-rich immune mol 99.9 1.5E-24 5E-29 194.5 15.5 198 63-270 35-239 (487)
37 4eco_A Uncharacterized protein 99.9 4.6E-25 1.6E-29 203.9 12.3 196 61-262 205-450 (636)
38 2z7x_B TOLL-like receptor 1, v 99.9 4.4E-24 1.5E-28 192.8 18.4 99 62-161 21-128 (520)
39 3o6n_A APL1; leucine-rich repe 99.9 1E-23 3.4E-28 183.9 19.5 101 61-162 68-179 (390)
40 3oja_B Anopheles plasmodium-re 99.9 6.9E-24 2.4E-28 194.8 19.1 196 62-260 75-340 (597)
41 3j0a_A TOLL-like receptor 5; m 99.9 5.1E-24 1.8E-28 202.8 18.6 105 61-165 47-165 (844)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.1E-24 2.8E-28 192.9 19.0 101 61-162 51-160 (562)
43 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-24 1.3E-28 196.6 16.3 202 63-268 329-544 (606)
44 1xku_A Decorin; proteoglycan, 99.9 2.8E-23 9.6E-28 177.1 20.3 191 60-258 74-277 (330)
45 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-24 1.1E-28 182.2 14.3 199 62-270 34-239 (317)
46 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-23 7.4E-28 194.0 20.5 202 63-265 382-605 (680)
47 1wwl_A Monocyte differentiatio 99.9 3.8E-25 1.3E-29 187.4 7.7 201 64-270 65-298 (312)
48 2z80_A TOLL-like receptor 2, v 99.9 2.9E-24 9.9E-29 185.0 13.2 201 60-261 74-318 (353)
49 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-24 1.4E-28 194.1 14.7 148 62-210 26-210 (549)
50 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.7E-28 172.5 18.1 191 66-261 23-222 (272)
51 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-23 6.2E-28 199.1 18.9 79 192-270 286-364 (844)
52 2ft3_A Biglycan; proteoglycan, 99.9 4.6E-23 1.6E-27 176.0 17.8 207 60-271 76-323 (332)
53 2z62_A TOLL-like receptor 4, v 99.9 2.7E-23 9.4E-28 172.8 15.5 184 87-271 28-227 (276)
54 1wwl_A Monocyte differentiatio 99.9 2.7E-24 9.1E-29 182.2 9.4 191 61-258 94-310 (312)
55 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-23 5.6E-28 192.3 15.4 202 63-271 308-524 (606)
56 2z63_A TOLL-like receptor 4, v 99.9 4.3E-23 1.5E-27 188.0 16.3 197 63-262 326-536 (570)
57 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-22 4.8E-27 182.9 19.1 89 145-233 321-412 (520)
58 3m19_A Variable lymphocyte rec 99.9 8.7E-23 3E-27 167.6 15.4 160 62-235 35-194 (251)
59 4ecn_A Leucine-rich repeat pro 99.9 6E-23 2E-27 194.5 16.1 170 60-235 446-659 (876)
60 2o6q_A Variable lymphocyte rec 99.9 8E-22 2.7E-26 163.6 20.9 182 87-271 16-208 (270)
61 1p9a_G Platelet glycoprotein I 99.9 5.5E-22 1.9E-26 166.3 19.5 182 82-270 5-197 (290)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-23 6.3E-28 177.4 9.9 198 60-269 56-263 (317)
63 4fmz_A Internalin; leucine ric 99.9 1.3E-21 4.5E-26 167.7 21.3 198 61-270 109-335 (347)
64 3oja_A Leucine-rich immune mol 99.9 2E-23 6.8E-28 187.2 10.3 197 60-268 56-262 (487)
65 1h6u_A Internalin H; cell adhe 99.9 6.7E-22 2.3E-26 167.2 19.1 186 61-262 40-234 (308)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4E-22 1.4E-26 181.7 18.8 125 145-270 350-499 (562)
67 2z63_A TOLL-like receptor 4, v 99.9 1.9E-22 6.5E-27 183.7 15.9 152 62-214 28-195 (570)
68 2z81_A CD282 antigen, TOLL-lik 99.9 2E-22 6.7E-27 183.0 15.7 108 61-169 49-169 (549)
69 1o6v_A Internalin A; bacterial 99.9 3.7E-21 1.3E-25 171.6 21.7 193 61-270 176-377 (466)
70 4fmz_A Internalin; leucine ric 99.9 6.2E-21 2.1E-25 163.5 20.9 200 59-271 85-314 (347)
71 2v9t_B SLIT homolog 2 protein 99.9 4.8E-21 1.7E-25 154.2 15.8 163 43-233 3-165 (220)
72 3cvr_A Invasion plasmid antige 99.9 9.1E-22 3.1E-26 178.7 12.9 191 52-268 49-254 (571)
73 4glp_A Monocyte differentiatio 99.9 9.4E-22 3.2E-26 166.3 11.8 192 63-258 65-286 (310)
74 1o6v_A Internalin A; bacterial 99.9 1.7E-20 5.7E-25 167.3 20.1 183 61-258 198-389 (466)
75 4ay9_X Follicle-stimulating ho 99.9 9.8E-22 3.4E-26 169.0 11.7 219 45-270 2-248 (350)
76 2xot_A Amphoterin-induced prot 99.9 3.8E-21 1.3E-25 166.1 15.1 187 43-257 10-202 (361)
77 2ca6_A RAN GTPase-activating p 99.9 4E-22 1.4E-26 173.6 7.8 201 61-261 59-320 (386)
78 3bz5_A Internalin-J, INLJ; leu 99.9 4.8E-20 1.7E-24 163.9 21.0 183 61-264 63-253 (457)
79 2ast_B S-phase kinase-associat 99.9 2.6E-22 8.8E-27 171.3 5.8 194 62-258 70-285 (336)
80 2ast_B S-phase kinase-associat 99.9 8.6E-22 2.9E-26 168.1 8.9 201 62-266 93-315 (336)
81 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-20 1.1E-24 165.1 19.1 163 53-233 76-246 (457)
82 1h6u_A Internalin H; cell adhe 99.9 4E-20 1.4E-24 156.2 18.3 187 68-271 25-220 (308)
83 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-20 5.4E-25 151.2 14.3 165 43-235 3-168 (220)
84 3e6j_A Variable lymphocyte rec 99.8 4.7E-20 1.6E-24 149.3 17.0 159 49-236 17-175 (229)
85 2ca6_A RAN GTPase-activating p 99.8 3.1E-22 1.1E-26 174.3 4.0 211 61-271 31-306 (386)
86 2o6s_A Variable lymphocyte rec 99.8 2.3E-20 8E-25 148.7 14.4 179 61-264 27-205 (208)
87 2v70_A SLIT-2, SLIT homolog 2 99.8 4.1E-20 1.4E-24 148.7 15.8 155 90-260 14-169 (220)
88 2v9t_B SLIT homolog 2 protein 99.8 5.3E-20 1.8E-24 148.1 16.1 153 90-258 14-166 (220)
89 4g8a_A TOLL-like receptor 4; l 99.8 3.4E-20 1.2E-24 170.5 16.0 181 63-258 53-238 (635)
90 3e6j_A Variable lymphocyte rec 99.8 2.6E-19 8.8E-24 144.9 17.1 156 89-261 21-176 (229)
91 4g8a_A TOLL-like receptor 4; l 99.8 2.2E-19 7.6E-24 165.1 18.2 136 122-257 443-580 (635)
92 1h6t_A Internalin B; cell adhe 99.8 2E-19 6.8E-24 150.8 16.3 170 61-258 45-214 (291)
93 1jl5_A Outer protein YOPM; leu 99.8 1.5E-20 5.1E-25 167.1 8.9 192 62-270 11-239 (454)
94 2xwt_C Thyrotropin receptor; s 99.8 6.9E-20 2.3E-24 149.1 12.1 169 87-271 31-208 (239)
95 4glp_A Monocyte differentiatio 99.8 2.7E-20 9.4E-25 157.3 9.3 190 62-258 91-308 (310)
96 3g06_A SSPH2 (leucine-rich rep 99.8 4.7E-19 1.6E-23 162.6 17.4 84 173-265 222-305 (622)
97 3goz_A Leucine-rich repeat-con 99.8 2.5E-20 8.7E-25 160.9 8.0 195 62-257 22-266 (362)
98 1m9s_A Internalin B; cell inva 99.8 5.2E-19 1.8E-23 162.0 16.9 170 61-258 42-211 (605)
99 4ezg_A Putative uncharacterize 99.8 4.9E-19 1.7E-23 139.9 13.6 155 83-258 40-195 (197)
100 3goz_A Leucine-rich repeat-con 99.8 1.2E-20 4.3E-25 162.8 4.1 200 63-263 52-303 (362)
101 3g06_A SSPH2 (leucine-rich rep 99.8 7.9E-18 2.7E-22 154.5 22.2 67 196-271 221-287 (622)
102 2xot_A Amphoterin-induced prot 99.8 8E-19 2.7E-23 151.5 14.8 163 90-268 21-187 (361)
103 1jl5_A Outer protein YOPM; leu 99.8 4.4E-18 1.5E-22 151.1 19.3 171 64-257 73-250 (454)
104 4b8c_D Glucose-repressible alc 99.8 7.7E-21 2.7E-25 177.8 1.4 225 5-267 130-364 (727)
105 1h6t_A Internalin B; cell adhe 99.8 2.8E-18 9.7E-23 143.7 16.8 176 66-271 28-203 (291)
106 1z7x_W Ribonuclease inhibitor; 99.8 8.7E-21 3E-25 168.5 0.7 173 87-259 199-413 (461)
107 1dce_A Protein (RAB geranylger 99.8 1.7E-22 5.8E-27 183.9 -10.6 185 64-261 351-550 (567)
108 1z7x_W Ribonuclease inhibitor; 99.8 8.9E-21 3.1E-25 168.5 0.0 210 61-270 112-400 (461)
109 2ell_A Acidic leucine-rich nuc 99.8 3.7E-18 1.3E-22 131.3 12.4 138 124-264 24-166 (168)
110 4ezg_A Putative uncharacterize 99.8 3.4E-18 1.2E-22 135.0 12.1 152 61-234 43-195 (197)
111 1w8a_A SLIT protein; signaling 99.8 5.3E-18 1.8E-22 133.4 12.9 141 45-213 2-143 (192)
112 3cvr_A Invasion plasmid antige 99.8 1.8E-17 6.2E-22 150.5 17.6 160 88-271 60-233 (571)
113 1w8a_A SLIT protein; signaling 99.8 8.8E-18 3E-22 132.2 13.2 132 90-237 11-143 (192)
114 1xeu_A Internalin C; cellular 99.8 7.5E-18 2.6E-22 139.1 12.9 167 64-259 21-187 (263)
115 1m9s_A Internalin B; cell inva 99.7 3.5E-17 1.2E-21 149.9 16.3 178 64-271 23-200 (605)
116 2o6r_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 125.7 13.9 139 45-211 1-139 (177)
117 2je0_A Acidic leucine-rich nuc 99.7 1.6E-17 5.5E-22 125.2 9.7 128 124-253 17-149 (149)
118 2wfh_A SLIT homolog 2 protein 99.7 1.1E-16 3.6E-21 126.1 14.1 127 90-233 13-139 (193)
119 2o6r_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 123.0 14.1 133 89-237 9-141 (177)
120 2ell_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 123.0 12.0 135 85-234 22-161 (168)
121 2wfh_A SLIT homolog 2 protein 99.7 4.2E-16 1.4E-20 122.7 13.7 139 43-210 2-140 (193)
122 1xeu_A Internalin C; cellular 99.7 8.8E-17 3E-21 132.7 9.8 158 86-271 18-175 (263)
123 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 5.7E-21 119.5 9.5 123 147-271 16-143 (149)
124 4ay9_X Follicle-stimulating ho 99.7 8.7E-16 3E-20 131.8 13.7 190 60-254 52-256 (350)
125 4b8c_D Glucose-repressible alc 99.7 8.2E-17 2.8E-21 150.6 7.6 166 87-266 173-338 (727)
126 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-15 3.6E-20 118.4 9.4 132 83-232 15-152 (176)
127 3ogk_B Coronatine-insensitive 99.6 7.6E-17 2.6E-21 147.4 1.1 197 63-259 294-528 (592)
128 1ds9_A Outer arm dynein; leuci 99.6 1.2E-17 4E-22 132.1 -5.7 156 83-258 14-186 (198)
129 3sb4_A Hypothetical leucine ri 99.6 6.4E-15 2.2E-19 125.4 10.0 99 171-271 225-324 (329)
130 1ds9_A Outer arm dynein; leuci 99.6 1.7E-17 5.9E-22 131.1 -5.8 141 126-271 20-177 (198)
131 1a9n_A U2A', U2A'; complex (nu 99.6 1E-14 3.4E-19 112.9 9.6 129 123-257 18-153 (176)
132 3g39_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 109.4 12.1 107 126-235 11-117 (170)
133 3ogk_B Coronatine-insensitive 99.6 1.7E-15 5.6E-20 138.6 4.9 34 219-252 377-411 (592)
134 1dce_A Protein (RAB geranylger 99.5 3.7E-14 1.3E-18 129.1 12.2 171 63-251 373-567 (567)
135 2r9u_A Variable lymphocyte rec 99.5 6.2E-14 2.1E-18 108.3 11.6 106 127-235 15-120 (174)
136 3sb4_A Hypothetical leucine ri 99.5 2.8E-14 9.7E-19 121.3 9.8 186 61-251 100-328 (329)
137 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 106.3 12.0 107 89-211 11-117 (170)
138 2p1m_B Transport inhibitor res 99.5 6.1E-16 2.1E-20 141.4 -2.6 199 62-262 289-524 (594)
139 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 105.0 12.0 106 90-211 15-120 (174)
140 4fdw_A Leucine rich hypothetic 99.4 3.8E-12 1.3E-16 111.0 17.2 197 63-268 158-369 (401)
141 2p1m_B Transport inhibitor res 99.4 5.4E-14 1.9E-18 128.5 4.1 171 84-254 102-324 (594)
142 3un9_A NLR family member X1; l 99.4 9.5E-15 3.3E-19 126.3 -2.2 183 63-257 73-283 (372)
143 2ifg_A High affinity nerve gro 99.4 2.8E-12 9.7E-17 109.6 12.2 113 45-185 1-116 (347)
144 3un9_A NLR family member X1; l 99.4 1.2E-14 4.2E-19 125.6 -3.2 173 86-266 71-261 (372)
145 2ifg_A High affinity nerve gro 99.3 3.6E-12 1.2E-16 108.9 10.4 104 128-234 12-117 (347)
146 4fdw_A Leucine rich hypothetic 99.3 7.2E-11 2.5E-15 103.0 16.5 189 61-257 179-383 (401)
147 2ra8_A Uncharacterized protein 99.1 3.4E-11 1.1E-15 103.5 3.6 180 62-258 107-321 (362)
148 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.1E-14 93.8 6.3 166 87-259 107-294 (362)
149 4fs7_A Uncharacterized protein 98.8 2E-07 6.7E-12 80.9 16.5 100 167-271 292-391 (394)
150 1io0_A Tropomodulin; LRR prote 98.8 2.5E-09 8.6E-14 83.1 2.9 115 143-257 31-164 (185)
151 4fs7_A Uncharacterized protein 98.7 2.7E-07 9.3E-12 80.0 13.2 200 61-271 161-369 (394)
152 4gt6_A Cell surface protein; l 98.7 7.7E-07 2.6E-11 77.2 16.0 51 64-116 66-119 (394)
153 1io0_A Tropomodulin; LRR prote 98.6 1.2E-08 4.2E-13 79.2 1.9 63 171-233 92-164 (185)
154 4gt6_A Cell surface protein; l 98.5 1.9E-06 6.5E-11 74.7 14.9 109 144-256 261-369 (394)
155 4h09_A Hypothetical leucine ri 98.5 4E-06 1.4E-10 72.1 16.0 85 167-253 258-342 (379)
156 3rw6_A Nuclear RNA export fact 98.3 5.7E-07 1.9E-11 73.6 5.8 80 170-250 168-257 (267)
157 3e4g_A ATP synthase subunit S, 98.3 4.9E-07 1.7E-11 69.0 4.0 83 148-230 61-149 (176)
158 3rw6_A Nuclear RNA export fact 98.3 7.5E-07 2.6E-11 72.9 5.4 76 193-270 167-253 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.7E-06 5.8E-11 66.0 3.9 82 173-254 62-149 (176)
160 4h09_A Hypothetical leucine ri 98.1 8.3E-05 2.8E-09 63.8 14.4 137 106-246 212-358 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.6E-05 8.9E-10 60.6 3.3 90 167-256 65-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 5.7E-05 2E-09 58.7 2.0 62 171-232 97-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00077 2.6E-08 48.7 6.5 56 176-233 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0047 1.6E-07 44.5 6.9 56 45-114 2-58 (130)
165 2lz0_A Uncharacterized protein 61.2 27 0.00092 23.2 6.1 38 142-180 14-51 (100)
166 2lz0_A Uncharacterized protein 54.0 21 0.00073 23.7 4.6 45 160-205 8-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.2e-38 Score=266.81 Aligned_cols=250 Identities=31% Similarity=0.493 Sum_probs=194.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCcc
Q 040280 2 ASDSSKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCA--WVGISCNQV---GRVISIDLSSMGLNG 76 (271)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~--~~~v~~~~~---~~l~~L~L~~~~~~~ 76 (271)
+.|.+.|+.||++||+++.+ + ..+++|. . .. ++|. |.||.|+.. ++|+.|+++++++.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~-~-~~l~~W~-----~-----~~----~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~ 64 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGN-P-TTLSSWL-----P-----TT----DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTC-C-GGGTTCC-----T-----TS----CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSS
T ss_pred CCCCHHHHHHHHHHHHhcCC-c-ccccCCC-----C-----CC----CCCcCCCcceEeCCCCCCceEEEEECCCCCccC
Confidence 46889999999999999965 3 3788997 3 44 6777 999999864 799999999999998
Q ss_pred --ccChhhhCCCCCCcEEECCC-CCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEccCCcCCCcccc
Q 040280 77 --ALQKFAFSSFPHLMHFNLSF-NLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDLSQNQLSGSISF 142 (271)
Q Consensus 77 --~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~~ 142 (271)
.+|. .+..+++|++|++++ |.+.+.+|..+..+++|++|+++. ..+++|++|++++|.+.+.+|.
T Consensus 65 ~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 65 PYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp CEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 8888 999999999999995 899989999999999999999954 4567899999999999888888
Q ss_pred ccCCCCCCCEEEcccCcCCCccCccccCCC-CCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCC
Q 040280 143 SLGKLSSLDLLYLYSNSFSGSIPSIIGNFK-SLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221 (271)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 221 (271)
.+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+++..|..+..+++
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 899999999999999998888888888887 888888888888766676666665 667777666666555555666666
Q ss_pred CCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 222 LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 222 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
|+.|++++|.+.+.++. +..+++|++|++++|++++.+|..+..++.|
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 66666666655544333 4455555555555555555555555555544
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=6.1e-35 Score=249.46 Aligned_cols=254 Identities=19% Similarity=0.204 Sum_probs=224.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcccceeeC---------CCCCEEEEEcCCCC
Q 040280 3 SDSSKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCN---------QVGRVISIDLSSMG 73 (271)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~~~~v~~~---------~~~~l~~L~L~~~~ 73 (271)
++...|+.||++||..+..++....+.|. . ..-...+.|.|.|+.|. ...+++.|++++++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~-----~-----~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~ 92 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWR-----Q-----ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP 92 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHH-----H-----HTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhc-----c-----cccccccccccCCcchhhhHHHHhcccccceeEEEccCCC
Confidence 34567899999999998776667778884 1 00012278999999985 24689999999999
Q ss_pred CccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC----------CCCCCCcEEEccCCcCCCccccc
Q 040280 74 LNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL----------ENLKYLSTLDLSQNQLSGSISFS 143 (271)
Q Consensus 74 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------~~l~~L~~L~l~~n~~~~~~~~~ 143 (271)
+. .+|. .+..+++|++|++++|.+. .+|..+..+++|++|+++. ..+++|++|++++|.+.+.+|..
T Consensus 93 l~-~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 93 LP-QFPD-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp CS-SCCS-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred ch-hcCh-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 98 7888 7888999999999999998 7899999999999999966 45678999999999888888877
Q ss_pred cCC---------CCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcc
Q 040280 144 LGK---------LSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPP 214 (271)
Q Consensus 144 l~~---------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 214 (271)
+.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|.
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred HhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHH
Confidence 654 999999999999998 88999999999999999999999 5677799999999999999999999999
Q ss_pred cccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 215 NLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 215 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
.+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+++++.|+
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 999999999999999999999999999999999999999999999999999999874
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-33 Score=266.86 Aligned_cols=248 Identities=32% Similarity=0.517 Sum_probs=177.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccc---cC
Q 040280 3 SDSSKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCNQVGRVISIDLSSMGLNGA---LQ 79 (271)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~---~~ 79 (271)
++.++|+.||++||+++.+ +. .+++|. . .+ ++|.|.||.|+ .++|+.|+|+++.+.|. ++
T Consensus 8 ~~~~~~~~all~~k~~~~~-~~-~l~~W~-----~-----~~----~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~ 70 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPD-KN-LLPDWS-----S-----NK----NPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVS 70 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSC-TT-SSTTCC-----T-----TS----CGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHH
T ss_pred cCCHHHHHHHHHHHhhCCC-cc-cccCCC-----C-----CC----CCcCCcceEEC-CCcEEEEECCCCCcCCccCccC
Confidence 4567899999999999984 45 889997 3 55 89999999998 68999999999998876 44
Q ss_pred h----------------------hhhCCCCCCcEEECCCCCCcccCch--hhccCCCCCEEecCC------------CCC
Q 040280 80 K----------------------FAFSSFPHLMHFNLSFNLFFGIIPP--QVGNLSELLHLDLVL------------ENL 123 (271)
Q Consensus 80 ~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~------------~~l 123 (271)
+ ..|..+++|++|++++|.+.+.+|. .+.++++|++|+++. ..+
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 3 2677889999999999999988888 899999999999965 356
Q ss_pred CCCcEEEccCCcCCCccccc---c----------------------CCCCCCCEEEcccCcCCCccCccccCCCCCCEEE
Q 040280 124 KYLSTLDLSQNQLSGSISFS---L----------------------GKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLD 178 (271)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~---l----------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 178 (271)
++|++|++++|.+++..+.. + ..+++|++|++++|.+.+.+|. ++.+++|++|+
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence 67888888888776554433 3 3455666666666666655554 67777777777
Q ss_pred ccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCC-CCCCEEeCccCccc
Q 040280 179 LSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANL-SSLRTLFLYNNGLY 257 (271)
Q Consensus 179 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~ 257 (271)
+++|.+++.+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|+++
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 7777777677777777777777777777666544432 44455555555555555555544443 55566666666555
Q ss_pred ccCccccccCCCC
Q 040280 258 GFVPEEIGCCLFP 270 (271)
Q Consensus 258 ~~~p~~~~~l~~l 270 (271)
+.+|..|++++.|
T Consensus 308 ~~~p~~~~~l~~L 320 (768)
T 3rgz_A 308 GAVPPFFGSCSLL 320 (768)
T ss_dssp ECCCGGGGGCTTC
T ss_pred CccchHHhcCCCc
Confidence 5555555555544
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-34 Score=265.45 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=188.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCCCCCCCC-------CCcccccCCCCCCCCCCCCCCCCcc---cceeeCCCCCEEEEEcCC
Q 040280 2 ASDSSKEAFALLKWKRSLQNKNISLLS-------SWTLHFDNASNVPSHSKPKISPCAW---VGISCNQVGRVISIDLSS 71 (271)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~~~~~~~~~~~~~~~c~~---~~v~~~~~~~l~~L~L~~ 71 (271)
++++.+|++||.++++++.+.+|.... +|. . .. ++|.| .||.|+..++|+.|+|++
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-----~-----~~----~~c~w~~~~GV~C~~~~~V~~L~L~~ 90 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-----F-----NK----ELDMWGAQPGVSLNSNGRVTGLSLEG 90 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC-----C-----SS----CGGGTTCCTTEEECTTCCEEEEECTT
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-----C-----CC----CcccccCCCCeEEcCCCCEEEEEecC
Confidence 355668999999999999986665333 787 3 45 88999 999998889999999999
Q ss_pred CCCccccChhhhCCCCCCcEEECCCCCC----------------------------------------------------
Q 040280 72 MGLNGALQKFAFSSFPHLMHFNLSFNLF---------------------------------------------------- 99 (271)
Q Consensus 72 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l---------------------------------------------------- 99 (271)
+++.|.+|+ .++++++|++|++++|.+
T Consensus 91 ~~l~g~lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 91 FGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp SCCEEEECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred cccCCcCCh-HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 999999998 999999999999998843
Q ss_pred --------------------------cccCchhhccCCCCCEEecCCC------------------------------CC
Q 040280 100 --------------------------FGIIPPQVGNLSELLHLDLVLE------------------------------NL 123 (271)
Q Consensus 100 --------------------------~~~~~~~~~~l~~L~~L~l~~~------------------------------~l 123 (271)
++ +|..+.++++|++|+++.+ .+
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 34 6777888888888887532 56
Q ss_pred CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCc-CCC-ccCccccCC------CCCCEEEccCCcCCCccch--hcc
Q 040280 124 KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNS-FSG-SIPSIIGNF------KSLLRLDLSENQLNGSIPL--SFG 193 (271)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~p~--~~~ 193 (271)
++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 678888888888887888888888888888888887 776 677766665 77788888887777 6666 777
Q ss_pred CCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCC-CCEEeCccCcccccCccccccC
Q 040280 194 NLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSS-LRTLFLYNNGLYGFVPEEIGCC 267 (271)
Q Consensus 194 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l 267 (271)
.+++|+.|++++|.++|.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|+++ .+|..++.+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~ 399 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTT
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhc
Confidence 77778888887777776666 5666666666666666666 55555666666 666666666666 566655543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-32 Score=260.23 Aligned_cols=246 Identities=19% Similarity=0.292 Sum_probs=189.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCC--CCCCCCCcc------------cceeeCCCCCEEEE
Q 040280 2 ASDSSKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHS--KPKISPCAW------------VGISCNQVGRVISI 67 (271)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~~c~~------------~~v~~~~~~~l~~L 67 (271)
+++..+|+.||++||+++.+ ++|. . +.. ...++.|.| .||.|+..++|+.|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~------~~W~-----~----~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L 328 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDG------KNWR-----Y----YSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTG------GGCC-----C----CCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEE
T ss_pred cccchHHHHHHHHHHHHcCC------CCCC-----c----CCCcccccCCccccccccccccccCcCceEecCCCCEEEE
Confidence 45567899999999999976 2787 3 110 122244999 99999988899999
Q ss_pred EcCCCCCccccChhhhCCCCCCcEEEC-CCCCCccc--------------------------------------------
Q 040280 68 DLSSMGLNGALQKFAFSSFPHLMHFNL-SFNLFFGI-------------------------------------------- 102 (271)
Q Consensus 68 ~L~~~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~-------------------------------------------- 102 (271)
+|+++++.|.+|+ .++++++|++|+| ++|.+.|.
T Consensus 329 ~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 329 SLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp ECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred ECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 9999999999998 9999999999999 67654433
Q ss_pred --------------------------------CchhhccCCCCCEEecCCC-----------------------------
Q 040280 103 --------------------------------IPPQVGNLSELLHLDLVLE----------------------------- 121 (271)
Q Consensus 103 --------------------------------~~~~~~~l~~L~~L~l~~~----------------------------- 121 (271)
+|..+.++++|++|+++.+
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 6777888888888887542
Q ss_pred -CCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCc-CCC-ccCccccCC-------CCCCEEEccCCcCCCccch-
Q 040280 122 -NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNS-FSG-SIPSIIGNF-------KSLLRLDLSENQLNGSIPL- 190 (271)
Q Consensus 122 -~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l-------~~L~~L~l~~n~~~~~~p~- 190 (271)
.+++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|+.|++++|.++ .+|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 45668888888888777788888888888888888887 776 566655444 37888888888877 6776
Q ss_pred -hccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCC-CCEEeCccCcccccCccccccCC
Q 040280 191 -SFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSS-LRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 191 -~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
.+.++++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|+++ .+|..++.++
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 7778888888888888877 666 6777778888888888877 66777777777 888888888877 6777665543
No 6
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=8.8e-30 Score=215.20 Aligned_cols=225 Identities=23% Similarity=0.234 Sum_probs=194.3
Q ss_pred CCCCCCCcccceeeCCCC----------CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCccc--CchhhccCCC
Q 040280 45 KPKISPCAWVGISCNQVG----------RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGI--IPPQVGNLSE 112 (271)
Q Consensus 45 ~~~~~~c~~~~v~~~~~~----------~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~ 112 (271)
||..|.|.|.++.|...+ +++.|++++|++. .++...|..+++|++|++++|.+... .+..+..+++
T Consensus 1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 888899999999997532 7899999999998 56664689999999999999998743 3678888999
Q ss_pred CCEEecCC----------CCCCCCcEEEccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccC
Q 040280 113 LLHLDLVL----------ENLKYLSTLDLSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSE 181 (271)
Q Consensus 113 L~~L~l~~----------~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 181 (271)
|++|+++. ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 99999976 456889999999999986544 5788999999999999999877888888999999999999
Q ss_pred CcCCC-ccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccC
Q 040280 182 NQLNG-SIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFV 260 (271)
Q Consensus 182 n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 260 (271)
|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 99875 57888889999999999999998777888888999999999999998877778888999999999999999888
Q ss_pred ccccccCC-CC
Q 040280 261 PEEIGCCL-FP 270 (271)
Q Consensus 261 p~~~~~l~-~l 270 (271)
|..+..++ .|
T Consensus 240 ~~~~~~~~~~L 250 (306)
T 2z66_A 240 KQELQHFPSSL 250 (306)
T ss_dssp SSSCCCCCTTC
T ss_pred HHHHHhhhccC
Confidence 88887774 44
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4.2e-29 Score=235.57 Aligned_cols=209 Identities=32% Similarity=0.510 Sum_probs=149.4
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC-----------CCCCCcEEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE-----------NLKYLSTLD 130 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~-----------~l~~L~~L~ 130 (271)
.+++.|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+..+++|++|+++.+ .+++|++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp TTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECcCCcccCcccH-HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 4566777777777666666 6667777777777777777667777777777777777542 345677777
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhc------------------
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSF------------------ 192 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~------------------ 192 (271)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 77777777777777777777777777777777777777777777777777777665555432
Q ss_pred ----------------------------------------------------cCCCCCCEEEeecCcCCCCCcccccCCC
Q 040280 193 ----------------------------------------------------GNLNNLTMMSLFSDSLSGSIPPNLGNLK 220 (271)
Q Consensus 193 ----------------------------------------------------~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 220 (271)
..+++|+.|++++|.++|.+|..++.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 2235567777777777777777777777
Q ss_pred CCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
.|+.|++++|.+++.+|..++.+++|+.|||++|+++|.+|..++.++.|+
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 777777777777777777777777777777777777777777777777663
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2e-28 Score=204.95 Aligned_cols=214 Identities=24% Similarity=0.241 Sum_probs=186.3
Q ss_pred CCCCCCCccc---ceeeCC----------CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCC
Q 040280 45 KPKISPCAWV---GISCNQ----------VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLS 111 (271)
Q Consensus 45 ~~~~~~c~~~---~v~~~~----------~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 111 (271)
||..|.|... .+.|.. ...++.|+++++++.+..+. .|..+++|++|++++|.+.+..|..+..++
T Consensus 2 CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred cCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 7888888543 366653 23789999999999865444 899999999999999999988899999999
Q ss_pred CCCEEecCCC------------CCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEc
Q 040280 112 ELLHLDLVLE------------NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDL 179 (271)
Q Consensus 112 ~L~~L~l~~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 179 (271)
+|++|+++.+ .+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 9999999764 3568999999999999877888999999999999999998666667899999999999
Q ss_pred cCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccccc
Q 040280 180 SENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 180 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 99999866666788999999999999999987788899999999999999999988778899999999999999998753
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.1e-29 Score=215.51 Aligned_cols=206 Identities=25% Similarity=0.375 Sum_probs=189.9
Q ss_pred CCCEEEEEcCC-CCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcE
Q 040280 61 VGRVISIDLSS-MGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLST 128 (271)
Q Consensus 61 ~~~l~~L~L~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~ 128 (271)
..+++.|++++ |++.+.+|. .|..+++|++|++++|.+.+.+|..+..+++|++|+++. ..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 45899999995 999999998 899999999999999999999999999999999999965 45679999
Q ss_pred EEccCCcCCCccccccCCCC-CCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCc
Q 040280 129 LDLSQNQLSGSISFSLGKLS-SLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDS 207 (271)
Q Consensus 129 L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 207 (271)
|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..+. |++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 99999999989999999998 999999999999989999999887 9999999999998899999999999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 208 LSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 208 l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|.. +.++.|
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc
Confidence 9976665 788899999999999999999999999999999999999999999986 555544
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.9e-28 Score=206.13 Aligned_cols=223 Identities=22% Similarity=0.282 Sum_probs=158.7
Q ss_pred CCCCCCCCCcccceeeCCC----------CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCC
Q 040280 43 HSKPKISPCAWVGISCNQV----------GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSE 112 (271)
Q Consensus 43 ~~~~~~~~c~~~~v~~~~~----------~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 112 (271)
..||..+.|.+..+.|... ..++.|++++|++.+..+. .|..+++|++|++++|.+.+..|..+..+++
T Consensus 23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVK 101 (330)
T ss_dssp CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence 6789999999999998742 3689999999999865554 8999999999999999999888999999999
Q ss_pred CCEEecCCCCC--------CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCC--ccCccccCCCCCCEEEccCC
Q 040280 113 LLHLDLVLENL--------KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSG--SIPSIIGNFKSLLRLDLSEN 182 (271)
Q Consensus 113 L~~L~l~~~~l--------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n 182 (271)
|++|+++.+.+ ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|
T Consensus 102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 99999987544 478899999998886666677888888888888887752 45566677777777777766
Q ss_pred cCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcc
Q 040280 183 QLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262 (271)
Q Consensus 183 ~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 262 (271)
.++ .+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|.
T Consensus 182 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 182 NIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred ccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 665 3333322 45555555555555444455555555555555555555544445555555555555555555 4555
Q ss_pred ccccCCCC
Q 040280 263 EIGCCLFP 270 (271)
Q Consensus 263 ~~~~l~~l 270 (271)
.+..++.|
T Consensus 258 ~l~~l~~L 265 (330)
T 1xku_A 258 GLADHKYI 265 (330)
T ss_dssp TTTTCSSC
T ss_pred hhccCCCc
Confidence 55555444
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1e-27 Score=213.17 Aligned_cols=226 Identities=20% Similarity=0.231 Sum_probs=194.2
Q ss_pred CCCCCCCCCc--ccceeeCCC----------CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccC
Q 040280 43 HSKPKISPCA--WVGISCNQV----------GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNL 110 (271)
Q Consensus 43 ~~~~~~~~c~--~~~v~~~~~----------~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 110 (271)
..||..|.|. +..+.|... .+++.|+|++|++.+..+. .|..+++|++|++++|.+.+..+..|.++
T Consensus 44 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 44 QNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCc
Confidence 6799989885 567888643 2789999999999876666 89999999999999999999888999999
Q ss_pred CCCCEEecCC-----------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccC-ccccCCCCCCEEE
Q 040280 111 SELLHLDLVL-----------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIP-SIIGNFKSLLRLD 178 (271)
Q Consensus 111 ~~L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~ 178 (271)
++|++|+++. ..+++|++|++++|.+....+..|.++++|++|++++|...+.++ ..|..+++|++|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 9999999965 356789999999999996666689999999999999955433444 4688999999999
Q ss_pred ccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 179 LSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 179 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
+++|.+++ +| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++
T Consensus 203 L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 203 LGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 99999984 45 47788999999999999998888889999999999999999998888889999999999999999996
Q ss_pred cCccccccCCCCC
Q 040280 259 FVPEEIGCCLFPN 271 (271)
Q Consensus 259 ~~p~~~~~l~~l~ 271 (271)
..+..+..++.|+
T Consensus 281 ~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 281 LPHDLFTPLRYLV 293 (452)
T ss_dssp CCTTSSTTCTTCC
T ss_pred cChHHhccccCCC
Confidence 6666777777663
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=211.39 Aligned_cols=226 Identities=22% Similarity=0.228 Sum_probs=193.4
Q ss_pred CCCCCCCCCc--ccceeeCCC----------CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccC
Q 040280 43 HSKPKISPCA--WVGISCNQV----------GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNL 110 (271)
Q Consensus 43 ~~~~~~~~c~--~~~v~~~~~----------~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 110 (271)
..||..|.|. +..+.|... ..++.|+|++|++.+..+. .|..+++|++|+|++|.+.+..+..|.++
T Consensus 33 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 33 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred ccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCC
Confidence 6799999995 567888642 3689999999999866555 89999999999999999998888999999
Q ss_pred CCCCEEecCC-----------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccC-ccccCCCCCCEEE
Q 040280 111 SELLHLDLVL-----------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIP-SIIGNFKSLLRLD 178 (271)
Q Consensus 111 ~~L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~ 178 (271)
++|++|+++. ..+++|++|++++|.+....+..|.++++|++|++++|...+.++ ..|..+++|++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 9999999965 456789999999999996666789999999999999955433444 4788999999999
Q ss_pred ccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 179 LSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 179 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
+++|.++ .+|. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++++
T Consensus 192 L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 192 LAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 9999998 5553 7788999999999999998778889999999999999999998888889999999999999999997
Q ss_pred cCccccccCCCCC
Q 040280 259 FVPEEIGCCLFPN 271 (271)
Q Consensus 259 ~~p~~~~~l~~l~ 271 (271)
..+..|..++.|+
T Consensus 270 ~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 270 LPHDLFTPLHHLE 282 (440)
T ss_dssp CCTTTTSSCTTCC
T ss_pred cChhHhccccCCC
Confidence 6666777777663
No 13
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.1e-27 Score=204.58 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=163.1
Q ss_pred CCCCCCCCCcccceeeCCC----------CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCC
Q 040280 43 HSKPKISPCAWVGISCNQV----------GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSE 112 (271)
Q Consensus 43 ~~~~~~~~c~~~~v~~~~~----------~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 112 (271)
..||..+.|.|..+.|... ..++.|++++|++.+..+. .|..+++|++|++++|.+.+..|..+..+++
T Consensus 25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 6789889999999988742 3789999999999865555 8999999999999999999888999999999
Q ss_pred CCEEecCCCCC--------CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCC--CccCccccCC-----------
Q 040280 113 LLHLDLVLENL--------KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFS--GSIPSIIGNF----------- 171 (271)
Q Consensus 113 L~~L~l~~~~l--------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l----------- 171 (271)
|++|+++.+.+ ++|++|++++|.+....+..+.++++|++|++++|.++ +..+..+..+
T Consensus 104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~ 183 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183 (332)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSB
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCC
Confidence 99999987544 47999999999999766667999999999999999885 2445555544
Q ss_pred ---------CCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcC
Q 040280 172 ---------KSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIAN 242 (271)
Q Consensus 172 ---------~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 242 (271)
++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..
T Consensus 184 l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 24555555555555444455556666666666666666554555666666666666666665 45555666
Q ss_pred CCCCCEEeCccCcccccCcccccc
Q 040280 243 LSSLRTLFLYNNGLYGFVPEEIGC 266 (271)
Q Consensus 243 l~~L~~L~l~~n~l~~~~p~~~~~ 266 (271)
+++|+.|++++|++++..+..|+.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSC
T ss_pred CccCCEEECCCCCCCccChhHccc
Confidence 666666666666666444444443
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=3.1e-27 Score=196.23 Aligned_cols=207 Identities=25% Similarity=0.261 Sum_probs=180.9
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC--------
Q 040280 49 SPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-------- 120 (271)
Q Consensus 49 ~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-------- 120 (271)
+.|.|.|+.|...+..+.+++++++++ .+|. .+. +++++|++++|.+.+..+..|..+++|++|+++.
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCS-SCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCC-ccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 789999999987667889999999988 4665 343 6899999999999987777899999999999965
Q ss_pred ---CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCC
Q 040280 121 ---ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNN 197 (271)
Q Consensus 121 ---~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 197 (271)
..+++|++|++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 45678999999999999766677899999999999999999777778899999999999999999766667889999
Q ss_pred CCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccccc
Q 040280 198 LTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 198 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999999999976666788999999999999999977777788999999999999998643
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.6e-27 Score=211.76 Aligned_cols=226 Identities=21% Similarity=0.257 Sum_probs=166.1
Q ss_pred CCCCCCCC--cccceeeCCC----------CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCC
Q 040280 44 SKPKISPC--AWVGISCNQV----------GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLS 111 (271)
Q Consensus 44 ~~~~~~~c--~~~~v~~~~~----------~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 111 (271)
.||..|.| .|..+.|... ..++.|+|++|++.+..+. .|..+++|++|++++|.+.+..|..|.+++
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 48888999 4568888642 2688999999999876566 899999999999999999988899999999
Q ss_pred CCCEEecCC-----------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEcc
Q 040280 112 ELLHLDLVL-----------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLS 180 (271)
Q Consensus 112 ~L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 180 (271)
+|++|+++. ..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 999999965 456789999999999987777888888999999999888887777778888888888888
Q ss_pred CCcCCCccchhccCCCCCCEEEeecCcCCCCCcc----------------------------------------------
Q 040280 181 ENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPP---------------------------------------------- 214 (271)
Q Consensus 181 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~---------------------------------------------- 214 (271)
+|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 8888765555566666666666655554432222
Q ss_pred --cccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 215 --NLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 215 --~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..|..++.|
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 23444555555555555554444555555666666666666665555566555554
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.1e-27 Score=209.15 Aligned_cols=82 Identities=20% Similarity=0.145 Sum_probs=53.4
Q ss_pred chhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCC
Q 040280 189 PLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 189 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|..|+.++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 44455556666666666666655555666666677777777766666666666677777777777777666666666666
Q ss_pred CC
Q 040280 269 FP 270 (271)
Q Consensus 269 ~l 270 (271)
.|
T Consensus 372 ~L 373 (455)
T 3v47_A 372 NL 373 (455)
T ss_dssp TC
T ss_pred cc
Confidence 55
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.2e-26 Score=204.42 Aligned_cols=107 Identities=23% Similarity=0.245 Sum_probs=74.0
Q ss_pred CccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCC
Q 040280 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS 244 (271)
Q Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 244 (271)
|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..|..+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 33455566777777777777766666777777777777777777666566677777777777777777766677777777
Q ss_pred CCCEEeCccCcccccCccccccCCCCC
Q 040280 245 SLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 245 ~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
+|++|++++|++++..+..+..++.|+
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cccEEECCCCccccCCHhHhccCCccc
Confidence 777777777777754444556666553
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=199.48 Aligned_cols=223 Identities=21% Similarity=0.210 Sum_probs=174.2
Q ss_pred CCCCCCCcccceeeCC------------CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCC
Q 040280 45 KPKISPCAWVGISCNQ------------VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSE 112 (271)
Q Consensus 45 ~~~~~~c~~~~v~~~~------------~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 112 (271)
++..+.|.|.++ |+. ..+++.|++++|++.+..+. .|..+++|++|++++|.+.+..+..|.++++
T Consensus 24 ~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 24 NQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ---CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 334466777765 431 23789999999999864444 7999999999999999999888889999999
Q ss_pred CCEEecCC-----------CCCCCCcEEEccCCcCCCccc-cccCCCCCCCEEEcccCc-CCCccCccccCCCCCCEEEc
Q 040280 113 LLHLDLVL-----------ENLKYLSTLDLSQNQLSGSIS-FSLGKLSSLDLLYLYSNS-FSGSIPSIIGNFKSLLRLDL 179 (271)
Q Consensus 113 L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l 179 (271)
|++|+++. ..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 99999976 456789999999999984433 478899999999999994 66555678899999999999
Q ss_pred cCCcCCCccchhccCCCCCCEEEeecCcCCCCCcc-cccCCCCCCEEEcccCcCCcc-----------------------
Q 040280 180 SENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPP-NLGNLKSLSTLRLHINQLNGV----------------------- 235 (271)
Q Consensus 180 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~i~~~----------------------- 235 (271)
++|.+++..|..+..+++|++|++++|.+.. +|. .+..+++|+.|++++|.+++.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 9999987778888888899999998888763 443 344567788888888877653
Q ss_pred --------ChhhhcCCCCCCEEeCccCcccccCccc-cccCCCCC
Q 040280 236 --------ISPSIANLSSLRTLFLYNNGLYGFVPEE-IGCCLFPN 271 (271)
Q Consensus 236 --------~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~l~ 271 (271)
+|..+..+++|++|++++|+++ .+|.. |+.++.|+
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQ 304 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCC
Confidence 3445667788888888888887 56665 46776653
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3e-26 Score=195.56 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=178.9
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC-------------------
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE------------------- 121 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~------------------- 121 (271)
..+++.|+|++|.+. .+|. .+..+++|++|++++|.+. .+|..+..+++|++|+++.+
T Consensus 103 l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCcc-chhH-HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 458999999999998 8888 8999999999999999998 68999999999999999652
Q ss_pred -CCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCE
Q 040280 122 -NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTM 200 (271)
Q Consensus 122 -~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 200 (271)
.+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 2889999999999999 88889999999999999999999 57778999999999999999999899999999999999
Q ss_pred EEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 201 MSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 201 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++++.+++..+.+.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999899999999999999999999999999999999999999999988765
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.3e-25 Score=186.27 Aligned_cols=212 Identities=24% Similarity=0.237 Sum_probs=183.2
Q ss_pred ceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCC
Q 040280 55 GISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENL 123 (271)
Q Consensus 55 ~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l 123 (271)
+..|... ..+.++.+++++. .+|. . ..++|++|++++|.+.+..+..|..+++|++|+++. ..+
T Consensus 5 ~C~C~~~-~~~~~~c~~~~l~-~ip~-~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 5 ACVCYNE-PKVTTSCPQQGLQ-AVPV-G--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp TCEEECS-SSCEEECCSSCCS-SCCT-T--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CceECCC-CCeEEEcCcCCcc-cCCc-C--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 3455432 2378899998887 4555 3 347999999999999988888899999999999965 456
Q ss_pred CCCcEEEccCCc-CCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 124 KYLSTLDLSQNQ-LSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 124 ~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 789999999997 7766688899999999999999999977788899999999999999999977777788999999999
Q ss_pred eecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 203 LFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 203 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
+++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..+..+..++.|+
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 999999866566789999999999999999998899999999999999999999976667788888764
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=4e-25 Score=203.09 Aligned_cols=146 Identities=21% Similarity=0.144 Sum_probs=111.2
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDL 131 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l 131 (271)
.++.|++++|.+++..+. .|..+++|++|++++|.+.+..|.+|.++++|++|++++ ..+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 688999999999866555 888999999999999988888888899999999999865 35578888888
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCC--EEEeecCcCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLT--MMSLFSDSLS 209 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~--~L~l~~n~l~ 209 (271)
++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88888866677788888888888888888753333444577788888887777755566666666665 5555555444
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.7e-25 Score=184.16 Aligned_cols=197 Identities=26% Similarity=0.270 Sum_probs=169.7
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDL 131 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l 131 (271)
.++.|++++|++.+..+. .|..+++|++|++++|.+.+..+..+..+++|++|+++. ..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 689999999999865554 899999999999999999988888999999999999965 45678999999
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCc-cCccccCCCCCCEEEccCCcCCCccchhccCCCCCC----EEEeecC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGS-IPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLT----MMSLFSD 206 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~----~L~l~~n 206 (271)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+.+|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999977666899999999999999999853 688999999999999999999976677777666666 8999999
Q ss_pred cCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCc
Q 040280 207 SLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261 (271)
Q Consensus 207 ~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 261 (271)
.+++..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99865444443 4589999999999997777778899999999999999987554
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=9.3e-25 Score=203.26 Aligned_cols=208 Identities=22% Similarity=0.230 Sum_probs=158.8
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLD 130 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~ 130 (271)
.+++.|++++|++.+..+. .|..+++|++|++++|.+.+..|..+.++++|++|+++. ..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4788999999998865444 788899999999999999888888899999999999864 4567889999
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhcc--CCCCCCEEEeecCcC
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFG--NLNNLTMMSLFSDSL 208 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~l~~n~l 208 (271)
+++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999988876667888899999999999988877777888888888888888888766555443 446777777777766
Q ss_pred CCCCcc---------------------------------------------------cccCCC--CCCEEEcccCcCCcc
Q 040280 209 SGSIPP---------------------------------------------------NLGNLK--SLSTLRLHINQLNGV 235 (271)
Q Consensus 209 ~~~~p~---------------------------------------------------~~~~l~--~L~~L~l~~n~i~~~ 235 (271)
++..|. .+..++ +|+.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 554433 232232 377777777777766
Q ss_pred ChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 236 ISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 236 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
.+..+..+++|++|++++|++++..|..|+.++.|
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 66777777777788887777777777677666655
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=8.9e-25 Score=195.35 Aligned_cols=210 Identities=20% Similarity=0.151 Sum_probs=152.9
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEE
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTL 129 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L 129 (271)
..+++.|+|++|.+.+ ++...|..+++|++|++++|.+.+..+..|..+++|++|+++. ..+++|++|
T Consensus 79 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 4577888888887763 4443677788888888888887777777777777788777754 344567777
Q ss_pred EccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCC------------------------CCCCEEEccCCcCC
Q 040280 130 DLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNF------------------------KSLLRLDLSENQLN 185 (271)
Q Consensus 130 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l------------------------~~L~~L~l~~n~~~ 185 (271)
++++|.+++..+..+..+++|++|++++|.+.+..+..|..+ .+|+.|++++|.++
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 777777665444455566666666666665554333344433 35666666667776
Q ss_pred CccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccc
Q 040280 186 GSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265 (271)
Q Consensus 186 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 265 (271)
...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..|.
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 44446778889999999999999877677788899999999999999988888999999999999999999866566677
Q ss_pred cCCCCC
Q 040280 266 CCLFPN 271 (271)
Q Consensus 266 ~l~~l~ 271 (271)
.++.|+
T Consensus 318 ~l~~L~ 323 (477)
T 2id5_A 318 SVGNLE 323 (477)
T ss_dssp CGGGCC
T ss_pred CCcccC
Confidence 766553
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.1e-24 Score=179.01 Aligned_cols=191 Identities=23% Similarity=0.266 Sum_probs=152.5
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEE
Q 040280 50 PCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTL 129 (271)
Q Consensus 50 ~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L 129 (271)
++.|.|..|.. ..+.++++++++. .+|. .+. +++++|++++|.+.+..+..+..+++ |++|
T Consensus 4 Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~-------------L~~L 64 (251)
T 3m19_A 4 CETVTGCTCNE--GKKEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTK-------------LTWL 64 (251)
T ss_dssp CHHHHSSEEEG--GGTEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTT-------------CCEE
T ss_pred CCCCCceEcCC--CCeEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCccc-------------CCEE
Confidence 44777777842 4467888888887 5665 443 58999999999999877777766554 5577
Q ss_pred EccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCC
Q 040280 130 DLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLS 209 (271)
Q Consensus 130 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 209 (271)
++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 65 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 77888888767777888889999999999888666677888888999999999888666666788888999999999888
Q ss_pred CCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccccc
Q 040280 210 GSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 210 ~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66666788888899999999988877777888888899999999988765
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.7e-24 Score=198.96 Aligned_cols=146 Identities=21% Similarity=0.173 Sum_probs=74.9
Q ss_pred CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCc-cccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 124 KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPS-IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 3444444444444434444444445555555555544433222 244555555555555555544455555555555555
Q ss_pred eecCcCCCC---CcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCC
Q 040280 203 LFSDSLSGS---IPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLF 269 (271)
Q Consensus 203 l~~n~l~~~---~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 269 (271)
+++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+.+++.
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 555555431 1133455555555555555555555555555666666666666666555555555543
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-24 Score=199.81 Aligned_cols=205 Identities=19% Similarity=0.116 Sum_probs=120.4
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDL 131 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l 131 (271)
+++.++++++.+. .+|...|..+++|++|++++|.+.+..|..|..+++|++|+++. ..+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 4566666666654 34443566666677777776666666666666666677666643 34456666666
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccc----------------------
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIP---------------------- 189 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p---------------------- 189 (271)
++|.+....+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++...
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 6666664433445666666666666666665555566666666666666666553211
Q ss_pred -------------------------------------hhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcC
Q 040280 190 -------------------------------------LSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQL 232 (271)
Q Consensus 190 -------------------------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i 232 (271)
..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 2234445555555555555555555555556666666666665
Q ss_pred CccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 233 NGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 233 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
++ +|..+..+++|+.|++++|+++ .+|..++.++.|
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 53 2444445566666666666665 455555554444
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=9.4e-25 Score=190.42 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=55.6
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDL 131 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l 131 (271)
+++.++++++.+. .+|...|..+++|++|++++|.+.+..+..+..+++|++|+++. ..+++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3444555554443 23332344455555555555555444444455555555555432 23344455555
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLN 185 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (271)
++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 555444222222344445555555554444333344444444444444444443
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=5.7e-24 Score=178.40 Aligned_cols=194 Identities=25% Similarity=0.256 Sum_probs=162.7
Q ss_pred CCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------CCCCCCcEE
Q 040280 59 NQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------ENLKYLSTL 129 (271)
Q Consensus 59 ~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~l~~L~~L 129 (271)
.....++.+++++++++ .+|. .+. +++++|++++|.+.+..+..|..+++|++|+++. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred cccCCccEEECCCCCCC-cCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 34456788888888876 4555 333 5788888888888877778888888888888865 355789999
Q ss_pred EccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCC
Q 040280 130 DLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLS 209 (271)
Q Consensus 130 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 209 (271)
++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999998 67888899999999999999999666678999999999999999999777777888999999999999999
Q ss_pred CCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 210 GSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 210 ~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
...+..+..+++|+.|++++|.++ .+|..+...++|+.+++++|++..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 655566788999999999999998 667777788899999999998753
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=7.9e-25 Score=184.78 Aligned_cols=198 Identities=26% Similarity=0.310 Sum_probs=175.9
Q ss_pred CCCCEEEEEcCCCCCcc--ccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC------------CCCCC
Q 040280 60 QVGRVISIDLSSMGLNG--ALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL------------ENLKY 125 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------~~l~~ 125 (271)
...+++.|++++|.+.. ..+. .+..+++|++|++++|.+.. +|..+..+++|++|+++. ..+++
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred ccccCCEEECCCCccCcccCccc-ccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 35689999999999873 3355 67779999999999999984 677799999999999964 45678
Q ss_pred CcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCC-ccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEee
Q 040280 126 LSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSG-SIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLF 204 (271)
Q Consensus 126 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 204 (271)
|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 9999999999998888889999999999999999985 578899999999999999999997778899999999999999
Q ss_pred cCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCC-CCCEEeCccCccccc
Q 040280 205 SDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS-SLRTLFLYNNGLYGF 259 (271)
Q Consensus 205 ~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~ 259 (271)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|++++.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9999976666788999999999999999998888898884 999999999999864
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.4e-24 Score=180.46 Aligned_cols=195 Identities=25% Similarity=0.278 Sum_probs=138.6
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLD 130 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~ 130 (271)
..++.|++.++.+. .++ .+..+++|++|++++|.+.+. ..+..+++|++|+++. ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~-~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIK-SVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCC-CCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcc-ccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 46777888877765 233 367778888888888877652 3566676666666643 3445677777
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCC
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSG 210 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 210 (271)
+++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 77777776555667777778888888777775555566777778888888877776666666777778888888877776
Q ss_pred CCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCC
Q 040280 211 SIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 211 ~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
..+..+..+++|+.|++++|.+.+. +++++.++++.|.++|.+|.+++.++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 6666667777788888877776533 45677777777888888888877664
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=4.8e-25 Score=179.73 Aligned_cols=211 Identities=16% Similarity=0.220 Sum_probs=162.3
Q ss_pred CCCCCCCCCcc-cc--eeeCC-------CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCC-CcccCchhhccCC
Q 040280 43 HSKPKISPCAW-VG--ISCNQ-------VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNL-FFGIIPPQVGNLS 111 (271)
Q Consensus 43 ~~~~~~~~c~~-~~--v~~~~-------~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 111 (271)
..||..|.|.. .. |.|.. ...++.|++++|++.+..+. .|..+++|++|++++|. +....+..|..++
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~ 80 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCT
T ss_pred CCCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCc
Confidence 35888888955 54 44853 23688999999998854444 78899999999999996 8766666776655
Q ss_pred CCCEEecCCCCCCCCcEEEccC-CcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCC---EEEccCC-cCCC
Q 040280 112 ELLHLDLVLENLKYLSTLDLSQ-NQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLL---RLDLSEN-QLNG 186 (271)
Q Consensus 112 ~L~~L~l~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~ 186 (271)
+ |++|++++ |.++...+..|.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++
T Consensus 81 ~-------------L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 81 K-------------VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp T-------------CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred C-------------CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhh
Confidence 4 55788887 88886556778899999999999999884 665 88888888 9999999 8886
Q ss_pred ccchhccCCCCCC-EEEeecCcCCCCCcccccCCCCCCEEEcccCc-CCccChhhhcCC-CCCCEEeCccCcccccCccc
Q 040280 187 SIPLSFGNLNNLT-MMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQ-LNGVISPSIANL-SSLRTLFLYNNGLYGFVPEE 263 (271)
Q Consensus 187 ~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~ 263 (271)
..+..|..+++|+ .|++++|.++ .+|......++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++..+..
T Consensus 146 i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~ 224 (239)
T 2xwt_C 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224 (239)
T ss_dssp ECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT
T ss_pred cCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH
Confidence 6666788899999 9999999988 455433333789999999995 887777788888 99999999999998433344
Q ss_pred cccCCCC
Q 040280 264 IGCCLFP 270 (271)
Q Consensus 264 ~~~l~~l 270 (271)
+.+++.|
T Consensus 225 ~~~L~~L 231 (239)
T 2xwt_C 225 LEHLKEL 231 (239)
T ss_dssp CTTCSEE
T ss_pred hccCcee
Confidence 6555543
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-24 Score=173.91 Aligned_cols=189 Identities=22% Similarity=0.265 Sum_probs=138.5
Q ss_pred CCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC
Q 040280 45 KPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK 124 (271)
Q Consensus 45 ~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 124 (271)
||..|.|.|.++.|... ++. .+|. ...++|++|++++|.+.+..+..+..++
T Consensus 1 Cp~~C~C~~~~v~c~~~-----------~l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~------------- 52 (208)
T 2o6s_A 1 CPSRCSCSGTTVECYSQ-----------GRT-SVPT---GIPAQTTYLDLETNSLKSLPNGVFDELT------------- 52 (208)
T ss_dssp CCTTCEEETTEEECCSS-----------CCS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCT-------------
T ss_pred CcCCCEECCCEEEecCC-----------Ccc-CCCC---CCCCCCcEEEcCCCccCcCChhhhcccc-------------
Confidence 78889999999999753 222 2333 2235788888888888765555555544
Q ss_pred CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEee
Q 040280 125 YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLF 204 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 204 (271)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 45567777777775555567788888888888888875555567788888888888888886666667778888888888
Q ss_pred cCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCC
Q 040280 205 SDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 205 ~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
+|.+++..+..+..+++|+.|++++|.+.+ .+++|++|+++.|+++|.+|.+++.++
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 888876555557778888888888887653 345778888888888888888877765
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=4.5e-24 Score=189.08 Aligned_cols=194 Identities=25% Similarity=0.221 Sum_probs=172.8
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEE
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTL 129 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L 129 (271)
..+++.|+|++|.+.+..+. .|..+++|++|++++|.+....+..|..+++|++|+++. ..+++|++|
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChh-hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 46899999999999865445 899999999999999999987777899999999999975 456899999
Q ss_pred EccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcC
Q 040280 130 DLSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSL 208 (271)
Q Consensus 130 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 208 (271)
++++|.....++ ..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 999955444444 47899999999999999998 566 488999999999999999988899999999999999999999
Q ss_pred CCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 209 SGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 209 ~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9888888999999999999999999888888899999999999999874
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=6.5e-24 Score=188.65 Aligned_cols=195 Identities=23% Similarity=0.198 Sum_probs=173.3
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcE
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLST 128 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~ 128 (271)
...+++.|+|++|.+.+..+. .|..+++|++|+|++|.+.+..+..|..+++|++|+++. ..+++|++
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 346899999999999866555 899999999999999999987778899999999999975 46689999
Q ss_pred EEccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCc
Q 040280 129 LDLSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDS 207 (271)
Q Consensus 129 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 207 (271)
|++++|...+.++ ..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 9999854443444 46899999999999999998 455 58899999999999999998889999999999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 208 LSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 208 l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99888888999999999999999999877788899999999999999875
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-24 Score=194.53 Aligned_cols=198 Identities=21% Similarity=0.187 Sum_probs=151.2
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCC------CCCcEEEccCCcC
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENL------KYLSTLDLSQNQL 136 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l------~~L~~L~l~~n~~ 136 (271)
+++.|+|++|.+.+..|. .|..+++|++|+|++|.+.+..| +..+++|++|+++.+.+ ++|++|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 789999999999876555 89999999999999999987665 88999999999987544 6788888888888
Q ss_pred CCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhcc-CCCCCCEEEeecCcCCCCCccc
Q 040280 137 SGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFG-NLNNLTMMSLFSDSLSGSIPPN 215 (271)
Q Consensus 137 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~ 215 (271)
.+..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++. +.
T Consensus 112 ~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~- 186 (487)
T 3oja_A 112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG- 186 (487)
T ss_dssp CCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-
T ss_pred CCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-
Confidence 755443 356788888888888766677777778888888888888776666665 677888888888877754 32
Q ss_pred ccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 216 LGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 216 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
...+++|+.|++++|.+++..+ .+..+++|+.|++++|.++ .+|..++.++.|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L 239 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCC
Confidence 3346778888888888776544 3677778888888888877 467777666655
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.6e-25 Score=203.91 Aligned_cols=196 Identities=17% Similarity=0.290 Sum_probs=154.9
Q ss_pred CCCEEEEEcCCCCCccc-----------------cChhhhC--CCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC
Q 040280 61 VGRVISIDLSSMGLNGA-----------------LQKFAFS--SFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE 121 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~ 121 (271)
..+++.|+|++|.+.+. +|. .++ ++++|++|++++|.+.+.+|..+.++++|++|+++.+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 56899999999999985 888 788 9999999999999999999999999999999999887
Q ss_pred C-C------------------CCCcEEEccCCcCCCcccc--ccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEcc
Q 040280 122 N-L------------------KYLSTLDLSQNQLSGSISF--SLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLS 180 (271)
Q Consensus 122 ~-l------------------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 180 (271)
. + ++|++|++++|.++ .+|. .+.++++|++|++++|.+.|.+| .+..+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 6 3 68999999999999 7888 89999999999999999987787 77777778888888
Q ss_pred CCcCCCccchhccCCCC-CCEEEeecCcCCCCCcccccCCC--CCCEEEcccCcCCccChhhhc-------CCCCCCEEe
Q 040280 181 ENQLNGSIPLSFGNLNN-LTMMSLFSDSLSGSIPPNLGNLK--SLSTLRLHINQLNGVISPSIA-------NLSSLRTLF 250 (271)
Q Consensus 181 ~n~~~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~ 250 (271)
+|.++ .+|..+..+++ |+.|++++|.++ .+|..+.... +|+.|++++|.+.+.+|..+. .+++|++|+
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 87777 66777777777 777777777777 5666555433 666677776666666665555 555666666
Q ss_pred CccCcccccCcc
Q 040280 251 LYNNGLYGFVPE 262 (271)
Q Consensus 251 l~~n~l~~~~p~ 262 (271)
+++|+++ .+|.
T Consensus 440 Ls~N~l~-~lp~ 450 (636)
T 4eco_A 440 LSNNQIS-KFPK 450 (636)
T ss_dssp CCSSCCC-SCCT
T ss_pred CcCCccC-cCCH
Confidence 6666665 4444
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=4.4e-24 Score=192.75 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC--------CCCCCcEEEccC
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE--------NLKYLSTLDLSQ 133 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~--------~l~~L~~L~l~~ 133 (271)
.+++.|++++|.+.+..+. .|..+++|++|++++|.+.+..|..|.++++|++|+++.+ .+++|++|++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccC
Confidence 5899999999999865555 8999999999999999999888999999999999999775 457899999999
Q ss_pred CcCCC-ccccccCCCCCCCEEEcccCcCC
Q 040280 134 NQLSG-SISFSLGKLSSLDLLYLYSNSFS 161 (271)
Q Consensus 134 n~~~~-~~~~~l~~l~~L~~L~l~~n~~~ 161 (271)
|.+.+ .+|..++++++|++|++++|.+.
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CccccccchhhhccCCcceEEEecCcccc
Confidence 99986 46788999999999999888775
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1e-23 Score=183.92 Aligned_cols=101 Identities=24% Similarity=0.224 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEE
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTL 129 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L 129 (271)
..+++.|++++|.+.+..+. .|..+++|++|++++|.+.+..|..+..+++|++|+++. ..+++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 35789999999998755444 788999999999999999887788888999999999864 456788999
Q ss_pred EccCCcCCCccccccCCCCCCCEEEcccCcCCC
Q 040280 130 DLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSG 162 (271)
Q Consensus 130 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 162 (271)
++++|.+.+..+..+.++++|++|++++|.+++
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 999999887777778888888888888888763
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.9e-24 Score=194.76 Aligned_cols=196 Identities=22% Similarity=0.246 Sum_probs=170.1
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLD 130 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~ 130 (271)
.+++.|+|++|.+.+..+. .|..+++|++|++++|.+.+..|..|..+++|++|+++. ..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 5789999999999876665 899999999999999999988888899999999999965 4567899999
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcccCcCCCcc----------------------------------------------
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSI---------------------------------------------- 164 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~---------------------------------------------- 164 (271)
+++|.+.+..+..|.++++|++|++++|.+++..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 9999999888888999999999999888776321
Q ss_pred -------------CccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCc
Q 040280 165 -------------PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQ 231 (271)
Q Consensus 165 -------------~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 231 (271)
+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.
T Consensus 234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence 1235667889999999999998889999999999999999999985 67777889999999999999
Q ss_pred CCccChhhhcCCCCCCEEeCccCcccccC
Q 040280 232 LNGVISPSIANLSSLRTLFLYNNGLYGFV 260 (271)
Q Consensus 232 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 260 (271)
+. .+|..+..+++|+.|++++|++++..
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 98 67778888999999999999998543
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=5.1e-24 Score=202.81 Aligned_cols=105 Identities=30% Similarity=0.341 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-------------CCCCCCc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-------------ENLKYLS 127 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-------------~~l~~L~ 127 (271)
..+++.|+|++|...+.+++..|.++++|++|+|++|.+.+..|..|.++++|++|+++. ..+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 345666666666555566444677777777777777777776777777777777777743 3455677
Q ss_pred EEEccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccC
Q 040280 128 TLDLSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIP 165 (271)
Q Consensus 128 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 165 (271)
+|++++|.+.+..+ ..|+++++|++|++++|.+.+..+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 77777777765543 467777777777777776654333
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=8.1e-24 Score=192.93 Aligned_cols=101 Identities=23% Similarity=0.199 Sum_probs=88.6
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC--------CCCCCcEEEcc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE--------NLKYLSTLDLS 132 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~--------~l~~L~~L~l~ 132 (271)
..+++.|++++|.+.+..+. .|..+++|++|++++|.+.+..|..|.++++|++|+++.+ .+++|++|+++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls 129 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLS 129 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECC
T ss_pred CCCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECC
Confidence 35899999999999865555 8999999999999999999988999999999999999774 45789999999
Q ss_pred CCcCCC-ccccccCCCCCCCEEEcccCcCCC
Q 040280 133 QNQLSG-SISFSLGKLSSLDLLYLYSNSFSG 162 (271)
Q Consensus 133 ~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~ 162 (271)
+|.+.+ ..|..|.++++|++|++++|.+.+
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc
Confidence 999986 345789999999999999998763
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=3.8e-24 Score=196.56 Aligned_cols=202 Identities=22% Similarity=0.134 Sum_probs=144.2
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCccc--CchhhccCCCCCEEecCC----------CCCCCCcEEE
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGI--IPPQVGNLSELLHLDLVL----------ENLKYLSTLD 130 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~----------~~l~~L~~L~ 130 (271)
+++.|++++|...+.+ .+..+++|++|++++|.+.+. .+..+..+++|++|+++. ..+++|++|+
T Consensus 329 ~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp SCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred ccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 3444444444332222 355667777777777777654 366777777777777754 3556777888
Q ss_pred ccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC-ccchhccCCCCCCEEEeecCcC
Q 040280 131 LSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG-SIPLSFGNLNNLTMMSLFSDSL 208 (271)
Q Consensus 131 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l 208 (271)
+++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 88877776655 567777888888888887776677777777888888888887775 3577777778888888888877
Q ss_pred CCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCC
Q 040280 209 SGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 209 ~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..+..++
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 7766777777778888888888877777777777788888888888877 6776666664
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.8e-23 Score=177.13 Aligned_cols=191 Identities=21% Similarity=0.280 Sum_probs=118.0
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcE
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLST 128 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~ 128 (271)
...+++.|++++|.+.+..|. .|..+++|++|++++|.+.. +|..+. ++|++|+++. ..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence 346889999999999876666 88999999999999988873 444433 5677777754 34556777
Q ss_pred EEccCCcCCC--ccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecC
Q 040280 129 LDLSQNQLSG--SISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSD 206 (271)
Q Consensus 129 L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 206 (271)
|++++|.+.. ..+..+.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 7777776653 34455666666666666666655 3343332 45555555555555444555555555555555555
Q ss_pred cCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 207 SLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 207 ~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 555444444555555555555555555 444445555555555555555553
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.1e-24 Score=182.20 Aligned_cols=199 Identities=21% Similarity=0.179 Sum_probs=123.5
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCC------CCCcEEEccCCc
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENL------KYLSTLDLSQNQ 135 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l------~~L~~L~l~~n~ 135 (271)
.+++.|++++|++.+..+. .|..+++|++|++++|.+.+..+ +..+++|++|+++.+.+ ++|++|++++|.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (317)
T ss_dssp GGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCc
Confidence 3688888888888765545 78888888888888888876544 78888888888876433 466666666666
Q ss_pred CCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhcc-CCCCCCEEEeecCcCCCCCcc
Q 040280 136 LSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFG-NLNNLTMMSLFSDSLSGSIPP 214 (271)
Q Consensus 136 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~ 214 (271)
+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. +.
T Consensus 111 l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~ 186 (317)
T 3o53_A 111 ISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (317)
T ss_dssp CSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred cCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc
Confidence 6643332 245566666666666654444555666666666666666644444442 456666666666665532 22
Q ss_pred cccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 215 NLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 215 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
...+++|++|++++|.+++..+ .+..+++|+.|++++|+++ .+|..+..++.|
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 187 -QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp -CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred -ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 2235566666666666654322 3555566666666666665 455555555444
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.2e-23 Score=194.02 Aligned_cols=202 Identities=21% Similarity=0.243 Sum_probs=151.8
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCc-hhhccCCCCCEEecCCC-----------CCCCCcEEE
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIP-PQVGNLSELLHLDLVLE-----------NLKYLSTLD 130 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~-----------~l~~L~~L~ 130 (271)
.++.|++++|++.+..+. .|..+++|++|++++|.+.+.+| ..+..+++|++|+++.+ .+++|++|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 567777777777766665 78888888888888888876555 67788888888888653 357788888
Q ss_pred ccCCcCC--CccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccc--------hhccCCCCCCE
Q 040280 131 LSQNQLS--GSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIP--------LSFGNLNNLTM 200 (271)
Q Consensus 131 l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--------~~~~~l~~L~~ 200 (271)
+++|.+. +..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 8888775 4567778888888888888888886666677888888888888888764321 22567788888
Q ss_pred EEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccc
Q 040280 201 MSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIG 265 (271)
Q Consensus 201 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 265 (271)
|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+.
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 88888888743334577888888888888888866666677888888888888888866555444
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.8e-25 Score=187.41 Aligned_cols=201 Identities=19% Similarity=0.173 Sum_probs=158.3
Q ss_pred EEEEEcCCCCC-ccccChhhhC-------CCCCCcEEECCCCCCcccCchhh--ccCCCCCEEecCCCCC----------
Q 040280 64 VISIDLSSMGL-NGALQKFAFS-------SFPHLMHFNLSFNLFFGIIPPQV--GNLSELLHLDLVLENL---------- 123 (271)
Q Consensus 64 l~~L~L~~~~~-~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~~~l---------- 123 (271)
++.|++++|.+ ...++. .+. .+++|++|++++|.+.+.+|..+ ..+++|++|+++.+.+
T Consensus 65 L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCH-HHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 34556666666 234444 333 68899999999999988888876 8899999999977544
Q ss_pred -----CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCc--cCccc--cCCCCCCEEEccCCcCCCc--c-chh
Q 040280 124 -----KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGS--IPSII--GNFKSLLRLDLSENQLNGS--I-PLS 191 (271)
Q Consensus 124 -----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~~--~-p~~ 191 (271)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. + ...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 6899999999999987778999999999999999997754 33344 7889999999999999831 2 234
Q ss_pred ccCCCCCCEEEeecCcCCCCCc-ccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 192 FGNLNNLTMMSLFSDSLSGSIP-PNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 192 ~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..++.|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 4578899999999999987664 34666789999999999998 6676665 8899999999999854 66 7777654
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=2.9e-24 Score=184.96 Aligned_cols=201 Identities=21% Similarity=0.243 Sum_probs=169.6
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC------------CCCCCCc
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL------------ENLKYLS 127 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------~~l~~L~ 127 (271)
...+++.|++++|.+.+..+. .|..+++|++|++++|.+.+..+..+..+++|++|+++. ..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 346899999999999876555 899999999999999999976666699999999999965 3567899
Q ss_pred EEEccCCc-CCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecC
Q 040280 128 TLDLSQNQ-LSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSD 206 (271)
Q Consensus 128 ~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 206 (271)
+|++++|. +....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|+.|++++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 99999994 66556678999999999999999999888899999999999999999997443344456899999999999
Q ss_pred cCCCC-------------------------------CcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCc
Q 040280 207 SLSGS-------------------------------IPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNG 255 (271)
Q Consensus 207 ~l~~~-------------------------------~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 255 (271)
.+++. +|..+..+++|+.|++++|.++...+..+..+++|++|++++|+
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 98763 23456778999999999999995444446899999999999999
Q ss_pred ccccCc
Q 040280 256 LYGFVP 261 (271)
Q Consensus 256 l~~~~p 261 (271)
+++..|
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 987654
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=4.1e-24 Score=194.06 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=117.0
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLD 130 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~ 130 (271)
..+++|++++|++.+..+. .|..+++|++|++++|.+.+..|.+|..+++|++|+++. ..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 4789999999998866666 889999999999999999888888899999999999965 4567889999
Q ss_pred ccCCcCCC-ccccccCCCCCCCEEEcccCcCCCccC-ccccCCCCCCEEEccCCcCCCccchhccC--------------
Q 040280 131 LSQNQLSG-SISFSLGKLSSLDLLYLYSNSFSGSIP-SIIGNFKSLLRLDLSENQLNGSIPLSFGN-------------- 194 (271)
Q Consensus 131 l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~-------------- 194 (271)
+++|.+.+ ..+..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99998885 356678888999999999888444554 57888888888888888887666665544
Q ss_pred ----------CCCCCEEEeecCcCCC
Q 040280 195 ----------LNNLTMMSLFSDSLSG 210 (271)
Q Consensus 195 ----------l~~L~~L~l~~n~l~~ 210 (271)
+++|+.|++++|.+++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccchhhHhhcccccEEEccCCcccc
Confidence 4566666666666554
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.8e-23 Score=172.53 Aligned_cols=191 Identities=24% Similarity=0.238 Sum_probs=164.4
Q ss_pred EEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------CCCCCCcEEEccCCcC
Q 040280 66 SIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------ENLKYLSTLDLSQNQL 136 (271)
Q Consensus 66 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~l~~L~~L~l~~n~~ 136 (271)
.+++..+.+.... ....+++|+.|++++|.+.. ...+..+++|++|+++. ..+++|++|++++|.+
T Consensus 23 ~l~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 23 KANLKKKSVTDAV---TQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHTCSCTTSEE---CHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC
T ss_pred HHHhcCccccccc---ccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc
Confidence 3445555555433 35667899999999999874 34588999999999976 4567899999999999
Q ss_pred CCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccc
Q 040280 137 SGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL 216 (271)
Q Consensus 137 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 216 (271)
++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh
Confidence 97777778999999999999999997777778999999999999999997777778899999999999999997777778
Q ss_pred cCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCc
Q 040280 217 GNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVP 261 (271)
Q Consensus 217 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 261 (271)
..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 899999999999999998888888999999999999999987766
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=199.05 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=35.5
Q ss_pred ccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 192 FGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 192 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..|..++.|
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 3334444444444444443334444444444444444444444444444444444455555444443333344444433
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=4.6e-23 Score=176.00 Aligned_cols=207 Identities=23% Similarity=0.286 Sum_probs=161.2
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcE
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLST 128 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~ 128 (271)
...+++.|++++|.+.+..+. .|..+++|++|++++|.+.. +|..+. ++|++|+++. ..+++|++
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred CCCCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 345788999999998866566 78888889999888888773 444333 5666666643 34456666
Q ss_pred EEccCCcCCC--ccccccCCC--------------------CCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC
Q 040280 129 LDLSQNQLSG--SISFSLGKL--------------------SSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG 186 (271)
Q Consensus 129 L~l~~n~~~~--~~~~~l~~l--------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (271)
|++++|.+.. ..+..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 6666666542 223333222 578888888888887777889999999999999999998
Q ss_pred ccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcC------CCCCCEEeCccCccc--c
Q 040280 187 SIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIAN------LSSLRTLFLYNNGLY--G 258 (271)
Q Consensus 187 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~------l~~L~~L~l~~n~l~--~ 258 (271)
..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+.. .+.|+.+++++|++. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 77878999999999999999998 68888999999999999999999776666654 367899999999987 5
Q ss_pred cCccccccCCCCC
Q 040280 259 FVPEEIGCCLFPN 271 (271)
Q Consensus 259 ~~p~~~~~l~~l~ 271 (271)
..|..|.+++.|+
T Consensus 311 ~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 311 VQPATFRCVTDRL 323 (332)
T ss_dssp SCGGGGTTBCCST
T ss_pred cCcccccccchhh
Confidence 6778888888764
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.7e-23 Score=172.84 Aligned_cols=184 Identities=25% Similarity=0.246 Sum_probs=158.0
Q ss_pred CCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEc
Q 040280 87 PHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYL 155 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 155 (271)
++|++|++++|.+.+..+..+.++++|++|+++. ..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 5799999999999988788999999999999965 45678999999999999777788999999999999
Q ss_pred ccCcCCCccCccccCCCCCCEEEccCCcCCCc-cchhccCCCCCCEEEeecCcCCCCCcccccCCCCCC----EEEcccC
Q 040280 156 YSNSFSGSIPSIIGNFKSLLRLDLSENQLNGS-IPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLS----TLRLHIN 230 (271)
Q Consensus 156 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l~~n 230 (271)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999866666799999999999999999863 588999999999999999999876666676666666 8999999
Q ss_pred cCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 231 QLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 231 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
.+.+..+..+. ..+|++|++++|++++..+..+..++.|+
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhccccccc
Confidence 99976655554 45899999999999965555678777764
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2.7e-24 Score=182.22 Aligned_cols=191 Identities=24% Similarity=0.275 Sum_probs=162.7
Q ss_pred CCCEEEEEcCCCCCccccChhhh--CCCCCCcEEECCCCCCcccCchhhccC-----CCCCEEecCC-----------CC
Q 040280 61 VGRVISIDLSSMGLNGALQKFAF--SSFPHLMHFNLSFNLFFGIIPPQVGNL-----SELLHLDLVL-----------EN 122 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~-----------~~ 122 (271)
..+++.|++++|++.+.+|. .+ ..+++|++|++++|.+.+. |..+..+ ++|++|+++. ..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPP-PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCC-CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHH-HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56899999999999998888 54 8999999999999999987 8888877 9999999965 46
Q ss_pred CCCCcEEEccCCcCCCc--ccccc--CCCCCCCEEEcccCcCCC--ccC-ccccCCCCCCEEEccCCcCCCccc-hhccC
Q 040280 123 LKYLSTLDLSQNQLSGS--ISFSL--GKLSSLDLLYLYSNSFSG--SIP-SIIGNFKSLLRLDLSENQLNGSIP-LSFGN 194 (271)
Q Consensus 123 l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~ 194 (271)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 78999999999998765 33444 889999999999999983 222 344678999999999999997664 45567
Q ss_pred CCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 195 LNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 195 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
+++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 899999999999998 6787666 8999999999999976 55 8899999999999999985
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.6e-23 Score=192.34 Aligned_cols=202 Identities=21% Similarity=0.182 Sum_probs=162.8
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC-------------CCCCCcEE
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE-------------NLKYLSTL 129 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~-------------~l~~L~~L 129 (271)
+++.|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|++|+++.+ .+++|++|
T Consensus 308 ~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred cCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 566666666666 45553 3 6666777777666443322 4567777777777653 44678888
Q ss_pred EccCCcCCCccccccCCCCCCCEEEcccCcCCCccC-ccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcC
Q 040280 130 DLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIP-SIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSL 208 (271)
Q Consensus 130 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 208 (271)
++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 382 ~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 88888877 456788888999999999999886666 5788899999999999999888888899999999999999999
Q ss_pred CC-CCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 209 SG-SIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 209 ~~-~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
++ .+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.+|..++.++.|+
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 87 3677889999999999999999988888999999999999999999988899999888774
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=188.04 Aligned_cols=197 Identities=24% Similarity=0.245 Sum_probs=160.8
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccC--chhhccCCCCCEEecCC----------CCCCCCcEEE
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGII--PPQVGNLSELLHLDLVL----------ENLKYLSTLD 130 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~----------~~l~~L~~L~ 130 (271)
.++.|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|+++. ..+++|++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEE
Confidence 455555555554433322 56788899999988887654 67788899999999875 3567899999
Q ss_pred ccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCC-CccchhccCCCCCCEEEeecCcC
Q 040280 131 LSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLN-GSIPLSFGNLNNLTMMSLFSDSL 208 (271)
Q Consensus 131 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l 208 (271)
+++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 99998886655 46788899999999999988778888888999999999999887 46788888899999999999999
Q ss_pred CCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcc
Q 040280 209 SGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262 (271)
Q Consensus 209 ~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 262 (271)
++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|.
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 877788888899999999999999888778888899999999999999887764
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=182.92 Aligned_cols=89 Identities=24% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC--ccchhccCCCCCCEEEeecCcCCCCCccc-ccCCCC
Q 040280 145 GKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG--SIPLSFGNLNNLTMMSLFSDSLSGSIPPN-LGNLKS 221 (271)
Q Consensus 145 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~ 221 (271)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345566666666666665556666666666666666666664 33455566666666666666665534432 444444
Q ss_pred CCEEEcccCcCC
Q 040280 222 LSTLRLHINQLN 233 (271)
Q Consensus 222 L~~L~l~~n~i~ 233 (271)
|++|++++|.++
T Consensus 401 L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 401 LLSLNMSSNILT 412 (520)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECcCCCCC
Confidence 444444444443
No 58
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.7e-23 Score=167.60 Aligned_cols=160 Identities=28% Similarity=0.348 Sum_probs=139.8
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccc
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSIS 141 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~ 141 (271)
..++.|+|++|++.+..+. .|..+++|++|++++|.+.+..+..+..++ +|++|++++|.++...+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------------ELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------------TCCEEECTTSCCCCCCT
T ss_pred CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCC-------------cCCEEECCCCcccccCh
Confidence 3689999999999876665 899999999999999999987777776655 45578888888887667
Q ss_pred cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCC
Q 040280 142 FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221 (271)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 221 (271)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 78899999999999999999666667889999999999999999777778899999999999999999777778899999
Q ss_pred CCEEEcccCcCCcc
Q 040280 222 LSTLRLHINQLNGV 235 (271)
Q Consensus 222 L~~L~l~~n~i~~~ 235 (271)
|+.|++++|.+...
T Consensus 181 L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 181 LQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSCCBCTT
T ss_pred CCEEEeeCCceeCC
Confidence 99999999999765
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=6e-23 Score=194.45 Aligned_cols=170 Identities=18% Similarity=0.257 Sum_probs=143.2
Q ss_pred CCCCEEEEEcCCCCCcc-----------------ccChhhhC--CCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC
Q 040280 60 QVGRVISIDLSSMGLNG-----------------ALQKFAFS--SFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL 120 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~-----------------~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 120 (271)
...+++.|+|++|.+.+ .+|. .++ ++++|++|++++|.+.+.+|..+.++++|++|+++.
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 35689999999999998 3887 766 999999999999999999999999999999999988
Q ss_pred CC-CC-------------------CCcEEEccCCcCCCcccc--ccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEE
Q 040280 121 EN-LK-------------------YLSTLDLSQNQLSGSISF--SLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLD 178 (271)
Q Consensus 121 ~~-l~-------------------~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 178 (271)
+. +. +|++|++++|.+. .+|. .+.++++|++|++++|.+. .+| .+..+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 76 33 7999999999999 8888 8999999999999999998 777 888999999999
Q ss_pred ccCCcCCCccchhccCCCC-CCEEEeecCcCCCCCcccccCCCC--CCEEEcccCcCCcc
Q 040280 179 LSENQLNGSIPLSFGNLNN-LTMMSLFSDSLSGSIPPNLGNLKS--LSTLRLHINQLNGV 235 (271)
Q Consensus 179 l~~n~~~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l~~--L~~L~l~~n~i~~~ 235 (271)
+++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..... |+.|++++|.+.+.
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence 9999988 78888888888 999999888887 56665554432 66666666665543
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=8e-22 Score=163.55 Aligned_cols=182 Identities=26% Similarity=0.268 Sum_probs=157.2
Q ss_pred CCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEccCCcCCCccccccCCCCCCCEEEc
Q 040280 87 PHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYL 155 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 155 (271)
...++++++++.++. +|..+. +++++|+++. ..+++|++|++++|.++...+..|.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 467899999999984 666554 6799999965 45678999999999999665566789999999999
Q ss_pred ccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCcc
Q 040280 156 YSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGV 235 (271)
Q Consensus 156 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~ 235 (271)
++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99999966667789999999999999999987788889999999999999999976666688999999999999999987
Q ss_pred ChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 236 ISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 236 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
.+..+..+++|++|++++|++++..+..+..++.|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 777899999999999999999965555687777764
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.5e-22 Score=166.28 Aligned_cols=182 Identities=24% Similarity=0.278 Sum_probs=158.7
Q ss_pred hhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEEccCCcCCCccccccCCCCCC
Q 040280 82 AFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLDLSQNQLSGSISFSLGKLSSL 150 (271)
Q Consensus 82 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 150 (271)
.+.+++++++++++++.++. +|..+. +.+++|+++. ..+++|++|++++|.+++. +.. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence 46788999999999999984 565554 6899999965 4567899999999999854 333 789999
Q ss_pred CEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccC
Q 040280 151 DLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHIN 230 (271)
Q Consensus 151 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 230 (271)
++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 78888999999999999999999777788999999999999999999776677889999999999999
Q ss_pred cCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 231 QLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 231 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
++++..+..+..+++|+.|++++|+++ .+|..+..++.|
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence 999777777889999999999999998 789888776655
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-23 Score=177.43 Aligned_cols=198 Identities=18% Similarity=0.144 Sum_probs=168.1
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC--------CCCCCcEEEc
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE--------NLKYLSTLDL 131 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~--------~l~~L~~L~l 131 (271)
...+++.|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|+++.+ .+++|++|++
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 127 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYL 127 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEEC
T ss_pred CCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEEC
Confidence 45689999999999986542 889999999999999988532 4489999999774 4568999999
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccc-cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSII-GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSG 210 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 210 (271)
++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.+++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 9999998778889999999999999999997666666 4789999999999999844 43 3358999999999999995
Q ss_pred CCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc-ccCccccccCCC
Q 040280 211 SIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY-GFVPEEIGCCLF 269 (271)
Q Consensus 211 ~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~ 269 (271)
+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ +.+|..+..++.
T Consensus 206 -l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 206 -MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp -ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred -chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 4555888999999999999999 46777889999999999999998 677777776653
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.3e-21 Score=167.73 Aligned_cols=198 Identities=23% Similarity=0.332 Sum_probs=131.5
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------CCCCCCcEEEc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------ENLKYLSTLDL 131 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~l~~L~~L~l 131 (271)
..+++.|++++|.+.+ ++. +..+++|++|++++|......+ .+..+++|++|+++. ..+++|++|++
T Consensus 109 l~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccC-chh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEc
Confidence 4567777777777763 222 5666666666666664433222 355555566555543 22344555555
Q ss_pred cCCcCCCccc--------------------cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchh
Q 040280 132 SQNQLSGSIS--------------------FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLS 191 (271)
Q Consensus 132 ~~n~~~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 191 (271)
++|.+.+..+ ..+..+++|++|++++|.+++ .+. +..+++|++|++++|.+++ + ..
T Consensus 185 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~ 260 (347)
T 4fmz_A 185 NYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NA 260 (347)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GG
T ss_pred cCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hh
Confidence 5554442211 115566777777777777763 333 7777888888888888774 3 35
Q ss_pred ccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 192 FGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 192 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..| +..++.|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred HhcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 67788888888888888753 3 47778888888888888888878888888889999999998886545 6666655
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2e-23 Score=187.19 Aligned_cols=197 Identities=18% Similarity=0.139 Sum_probs=169.7
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCC--------CCCCcEEEc
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLEN--------LKYLSTLDL 131 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~--------l~~L~~L~l 131 (271)
...+++.|+|++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|+++.+. +++|++|++
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L 127 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYL 127 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEECCCSSCEEEEC
T ss_pred CCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCccccCCCCEEEC
Confidence 45689999999999987553 889999999999999998643 33899999998754 578999999
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCcccc-CCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIG-NFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSG 210 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 210 (271)
++|.+++..|..+.++++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |. ...+++|+.|++++|.+++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC
Confidence 99999988888999999999999999999987887776 789999999999999855 33 3468999999999999996
Q ss_pred CCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc-ccCccccccCC
Q 040280 211 SIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY-GFVPEEIGCCL 268 (271)
Q Consensus 211 ~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~ 268 (271)
. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..++.++
T Consensus 206 ~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 206 M-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp E-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred C-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 4 4458889999999999999995 6777889999999999999998 66777776654
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=6.7e-22 Score=167.18 Aligned_cols=186 Identities=25% Similarity=0.391 Sum_probs=156.4
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC---------CCCCCcEEEc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE---------NLKYLSTLDL 131 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~---------~l~~L~~L~l 131 (271)
..+++.|+++++++.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|+++.+ .+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccC-ch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 4578999999998874 44 48889999999999999986444 889999999999763 5678999999
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGS 211 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 211 (271)
++|.+.+. + .+..+++|++|++++|.+++. +. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 99999854 3 389999999999999999844 33 88999999999999999854 43 88999999999999999854
Q ss_pred CcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcc
Q 040280 212 IPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPE 262 (271)
Q Consensus 212 ~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 262 (271)
+. +..+++|++|++++|.+.+.. .+..+++|+.|++++|++++ .|.
T Consensus 189 -~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 189 -SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp -GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC-CCE
T ss_pred -hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec-CCe
Confidence 33 788999999999999998664 37889999999999999984 443
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=4e-22 Score=181.74 Aligned_cols=125 Identities=25% Similarity=0.270 Sum_probs=70.6
Q ss_pred CCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC--ccchhccCCCCCCEEEeecCcCCCCCcc-cccCCCC
Q 040280 145 GKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG--SIPLSFGNLNNLTMMSLFSDSLSGSIPP-NLGNLKS 221 (271)
Q Consensus 145 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~ 221 (271)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 455667777777777766666666777777777777777664 2244566667777777777766653443 2344444
Q ss_pred CCEEEcccCcCCc---------------------cChhhhcCCCCCCEEeCccCcccccCccc-cccCCCC
Q 040280 222 LSTLRLHINQLNG---------------------VISPSIANLSSLRTLFLYNNGLYGFVPEE-IGCCLFP 270 (271)
Q Consensus 222 L~~L~l~~n~i~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~l 270 (271)
|++|++++|.+++ .+|..+..+++|++|++++|+++ .+|.. +..++.|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 4444444443332 23333345555666666666655 44444 5554444
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=183.75 Aligned_cols=152 Identities=25% Similarity=0.251 Sum_probs=114.7
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC-----------CCCCCCcEEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL-----------ENLKYLSTLD 130 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L~ 130 (271)
..++.|++++|++.+..+. .|..+++|++|++++|.+.+..+..|.++++|++|+++. ..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 3678888888888755544 788888888888888888877777888888888888865 3556788888
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcccCcCCC-ccCccccCCCCCCEEEccCCcCCCccchhccCCCCC----CEEEeec
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLYSNSFSG-SIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNL----TMMSLFS 205 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L----~~L~l~~ 205 (271)
+++|.+....+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++| +.+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 88888885555568888888888888888775 367788888888888888888876666666666666 6667666
Q ss_pred CcCCCCCcc
Q 040280 206 DSLSGSIPP 214 (271)
Q Consensus 206 n~l~~~~p~ 214 (271)
|.+.+..+.
T Consensus 187 n~l~~~~~~ 195 (570)
T 2z63_A 187 NPMNFIQPG 195 (570)
T ss_dssp CCCCEECTT
T ss_pred CCceecCHH
Confidence 666544333
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2e-22 Score=183.02 Aligned_cols=108 Identities=26% Similarity=0.262 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC------------CCCCCcE
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE------------NLKYLST 128 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~------------~l~~L~~ 128 (271)
..++++|++++|++.+..+. .|..+++|++|++++|.+.+..+..+.++++|++|+++.+ .+++|++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 45788888888888765555 7888888888888888888777777888888888888653 3456788
Q ss_pred EEccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccCcccc
Q 040280 129 LDLSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIPSIIG 169 (271)
Q Consensus 129 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 169 (271)
|++++|.+.+.++ ..+.++++|++|++++|.+++..|..+.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 8888877443444 4677777777777777777655554443
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.7e-21 Score=171.57 Aligned_cols=193 Identities=28% Similarity=0.392 Sum_probs=115.9
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC---------CCCCCcEEEc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE---------NLKYLSTLDL 131 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~---------~l~~L~~L~l 131 (271)
..+++.|++++|.+.+ ++ .+..+++|++|++++|.+.+..| +..+++|++|+++.+ .+++|++|++
T Consensus 176 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 176 LTTLERLDISSNKVSD-IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 250 (466)
T ss_dssp CTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred CCCCCEEECcCCcCCC-Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEEC
Confidence 3467777777777653 22 36667777777777777765443 556677777777553 3456677777
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGS 211 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 211 (271)
++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 7776664433 56666666666666666633 22 5566666666666666664333 45566666666666666544
Q ss_pred CcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCC
Q 040280 212 IPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFP 270 (271)
Q Consensus 212 ~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l 270 (271)
.| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|++++..| +..++.|
T Consensus 325 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 33 45556666666666665543 345556666666666666655444 4444444
No 70
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=6.2e-21 Score=163.52 Aligned_cols=200 Identities=24% Similarity=0.359 Sum_probs=150.4
Q ss_pred CCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC----------CCCCCcE
Q 040280 59 NQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE----------NLKYLST 128 (271)
Q Consensus 59 ~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~----------~l~~L~~ 128 (271)
....+++.|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|+++.+ .+++|++
T Consensus 85 ~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hcCCcCCEEEccCCcccC-ch--HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 345689999999999875 43 599999999999999999864 33 889999999999764 6789999
Q ss_pred EEccCCcCCCccccccCCCCCCCEEEcccCcCCCccC--------------------ccccCCCCCCEEEccCCcCCCcc
Q 040280 129 LDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIP--------------------SIIGNFKSLLRLDLSENQLNGSI 188 (271)
Q Consensus 129 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~~ 188 (271)
|++++|.+.+..+ +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc
Confidence 9999999985443 7788999999999988763221 01444556666666666666332
Q ss_pred chhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCC
Q 040280 189 PLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 189 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
+ +..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++++..|..++.++
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred c--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 2 5667777777777777664 2 3466777788888888877754 4577788888888888888877777787777
Q ss_pred CCC
Q 040280 269 FPN 271 (271)
Q Consensus 269 ~l~ 271 (271)
.|+
T Consensus 312 ~L~ 314 (347)
T 4fmz_A 312 NLT 314 (347)
T ss_dssp TCS
T ss_pred cCC
Confidence 663
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=4.8e-21 Score=154.17 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=127.7
Q ss_pred CCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCC
Q 040280 43 HSKPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLEN 122 (271)
Q Consensus 43 ~~~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 122 (271)
..||..|.|.|..+.|. +++++ .+|. .+. +++++|++++|.+.+..+..|..++
T Consensus 3 ~~CP~~C~C~~~~v~c~-----------~~~l~-~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~----------- 56 (220)
T 2v9t_B 3 LHCPAACTCSNNIVDCR-----------GKGLT-EIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYK----------- 56 (220)
T ss_dssp CCSCTTSEEETTEEECT-----------TSCCS-SCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCT-----------
T ss_pred CCCCCCCEECCCEEEcC-----------CCCcC-cCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCC-----------
Confidence 57999999988776665 34444 4554 333 5789999999988876666666554
Q ss_pred CCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 123 LKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 123 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
+|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..|..|..+++|+.|+
T Consensus 57 --~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 57 --KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp --TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 455777888888877788888899999999999988855555678888999999999998877788888888999999
Q ss_pred eecCcCCCCCcccccCCCCCCEEEcccCcCC
Q 040280 203 LFSDSLSGSIPPNLGNLKSLSTLRLHINQLN 233 (271)
Q Consensus 203 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~ 233 (271)
+++|.+++..+..+..+++|+.|++++|.+.
T Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999888766667888888999999988875
No 72
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=9.1e-22 Score=178.69 Aligned_cols=191 Identities=22% Similarity=0.283 Sum_probs=160.4
Q ss_pred cccce-eeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC------
Q 040280 52 AWVGI-SCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK------ 124 (271)
Q Consensus 52 ~~~~v-~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~------ 124 (271)
.|.++ .|. .++++.|++++|++.+ +|. .+ +++|++|++++|.+. .+| ..+++|++|+++.+.+.
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~l~ 119 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPELP 119 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCC
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcchhh
Confidence 68888 565 3589999999999986 776 44 378999999999998 566 45799999999886654
Q ss_pred -CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEe
Q 040280 125 -YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSL 203 (271)
Q Consensus 125 -~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 203 (271)
+|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++
T Consensus 120 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred cCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 89999999999996 665 68999999999999984 665 57899999999999995 666 65 89999999
Q ss_pred ecCcCCCCCcccccCCCCC-------CEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCC
Q 040280 204 FSDSLSGSIPPNLGNLKSL-------STLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 204 ~~n~l~~~~p~~~~~l~~L-------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..++.++
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 999998 6676 554 67 99999999999 5788788899999999999999999998887653
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=9.4e-22 Score=166.35 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=122.7
Q ss_pred CEEEEEcCCCCCccccCh--hhhCCCCCCcEEECCCCCCcccCchhh--ccCCCCCEEecCCCC---------------C
Q 040280 63 RVISIDLSSMGLNGALQK--FAFSSFPHLMHFNLSFNLFFGIIPPQV--GNLSELLHLDLVLEN---------------L 123 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~~~---------------l 123 (271)
+++.+.+.++.+....-. ..+..+++|++|++++|.+.+..|..+ ..+++|++|+++.+. +
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455666666655321000 012223456677777666666666665 666666666665422 5
Q ss_pred CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCc--c--CccccCCCCCCEEEccCCcCCCccch----hccCC
Q 040280 124 KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGS--I--PSIIGNFKSLLRLDLSENQLNGSIPL----SFGNL 195 (271)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~p~----~~~~l 195 (271)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 5777788888887766667777778888888888776532 1 122356777778888887776 3333 24566
Q ss_pred CCCCEEEeecCcCCCCCcccccCC---CCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 196 NNLTMMSLFSDSLSGSIPPNLGNL---KSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 196 ~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 778888888887776656555554 57788888888777 4555543 677788888887774
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.7e-20 Score=167.32 Aligned_cols=183 Identities=25% Similarity=0.334 Sum_probs=159.7
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------CCCCCCcEEEc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------ENLKYLSTLDL 131 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~l~~L~~L~l 131 (271)
..+++.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+++. ..+++|++|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred CCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEEC
Confidence 4689999999999986543 67799999999999999863 4688999999999976 45678999999
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGS 211 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 211 (271)
++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|.+++.
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 9999996544 8899999999999999985433 8899999999999999997665 67899999999999999864
Q ss_pred CcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 212 IPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 212 ~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
..+..+++|+.|++++|.+.+..| +..+++|+.|++++|++++
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred --hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 458899999999999999998776 8899999999999999986
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=9.8e-22 Score=169.04 Aligned_cols=219 Identities=19% Similarity=0.166 Sum_probs=144.0
Q ss_pred CCC-CCCCcccceeeCCC----------CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCc-hhhccCCC
Q 040280 45 KPK-ISPCAWVGISCNQV----------GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIP-PQVGNLSE 112 (271)
Q Consensus 45 ~~~-~~~c~~~~v~~~~~----------~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 112 (271)
||+ .|.|.+..|.|... .+++.|+|++|+++ .+|...|.++++|++|+|++|.+.+.+| .+|.++++
T Consensus 2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 775 48899999999642 36889999999997 5666579999999999999999866554 56788887
Q ss_pred CCEEec------------CCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEccc-CcCCCccCccccCCC-CCCEEE
Q 040280 113 LLHLDL------------VLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYS-NSFSGSIPSIIGNFK-SLLRLD 178 (271)
Q Consensus 113 L~~L~l------------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~ 178 (271)
++++.. .+..+++|++|++++|.+....+..+....++.++++.+ +.+....+..|..+. .++.|+
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 765432 124567777777777777755555555666677777765 344433333455543 467777
Q ss_pred ccCCcCCCccchhccCCCCCCEEEeec-CcCCCCCc-ccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcc
Q 040280 179 LSENQLNGSIPLSFGNLNNLTMMSLFS-DSLSGSIP-PNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256 (271)
Q Consensus 179 l~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 256 (271)
+++|.++ .++.......+|+.+++.+ |.++ .+| +.|..+++|++|++++|+++...+.. +.+|+.|.+.++.-
T Consensus 161 L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYN 235 (350)
T ss_dssp CCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTT
T ss_pred ccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCC
Confidence 8887777 4444444556777777764 4455 444 45677777888888888777443333 34555555555433
Q ss_pred cccCccccccCCCC
Q 040280 257 YGFVPEEIGCCLFP 270 (271)
Q Consensus 257 ~~~~p~~~~~l~~l 270 (271)
-..+|. +..++.|
T Consensus 236 l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 236 LKKLPT-LEKLVAL 248 (350)
T ss_dssp CCCCCC-TTTCCSC
T ss_pred cCcCCC-chhCcCh
Confidence 335663 4444444
No 76
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=3.8e-21 Score=166.06 Aligned_cols=187 Identities=22% Similarity=0.183 Sum_probs=142.1
Q ss_pred CCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhc-cCCCCCEEecCCC
Q 040280 43 HSKPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVG-NLSELLHLDLVLE 121 (271)
Q Consensus 43 ~~~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~~ 121 (271)
..||..|.|.+..+ +++++++. .+|. .+. +.++.|+|++|.+.+..+..+. .+
T Consensus 10 ~~Cp~~C~C~~~~l-----------~c~~~~l~-~iP~-~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l----------- 63 (361)
T 2xot_A 10 VSCPANCLCASNIL-----------SCSKQQLP-NVPQ-SLP--SYTALLDLSHNNLSRLRAEWTPTRL----------- 63 (361)
T ss_dssp TTCCTTCEEETTEE-----------ECCSSCCS-SCCS-SCC--TTCSEEECCSSCCCEECTTSSSSCC-----------
T ss_pred CCCCCCCEECCCEE-----------EeCCCCcC-ccCc-cCC--CCCCEEECCCCCCCccChhhhhhcc-----------
Confidence 67999888876544 44555555 4555 332 4688899999988876666554 44
Q ss_pred CCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEE
Q 040280 122 NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMM 201 (271)
Q Consensus 122 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 201 (271)
++|++|++++|.++...+..|.++++|++|++++|.++...+..|..+++|++|++++|.++...|..|..+++|+.|
T Consensus 64 --~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 64 --TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp --TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred --cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 456678888888886666778888999999999999886666678888999999999999887778888888999999
Q ss_pred EeecCcCCCCCcccc---cCCCCCCEEEcccCcCCccChhhhcCCCC--CCEEeCccCccc
Q 040280 202 SLFSDSLSGSIPPNL---GNLKSLSTLRLHINQLNGVISPSIANLSS--LRTLFLYNNGLY 257 (271)
Q Consensus 202 ~l~~n~l~~~~p~~~---~~l~~L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l~ 257 (271)
++++|.++...+..+ ..+++|+.|++++|.+++..+..+..++. ++.|++++|++.
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 999998885433444 56888999999999988766677777776 478899998875
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4e-22 Score=173.55 Aligned_cols=201 Identities=20% Similarity=0.199 Sum_probs=159.9
Q ss_pred CCCEEEEEcCCCC---CccccChh------hhCCCCCCcEEECCCCCCcc----cCchhhccCCCCCEEecCCCCC----
Q 040280 61 VGRVISIDLSSMG---LNGALQKF------AFSSFPHLMHFNLSFNLFFG----IIPPQVGNLSELLHLDLVLENL---- 123 (271)
Q Consensus 61 ~~~l~~L~L~~~~---~~~~~~~~------~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~~~l---- 123 (271)
..+++.|+|+++. +.+.+|.. .+..+++|++|++++|.+.+ .+|..+..+++|++|+++.+.+
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 4588999998863 44555541 13788999999999999886 4677888899999999988655
Q ss_pred --------------------CCCcEEEccCCcCC-Cccc---cccCCCCCCCEEEcccCcCCC-----ccCccccCCCCC
Q 040280 124 --------------------KYLSTLDLSQNQLS-GSIS---FSLGKLSSLDLLYLYSNSFSG-----SIPSIIGNFKSL 174 (271)
Q Consensus 124 --------------------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L 174 (271)
++|++|++++|.++ ..++ ..+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 79999999999987 3344 466778899999999998872 234477888999
Q ss_pred CEEEccCCcCC----CccchhccCCCCCCEEEeecCcCCCC----Ccccc--cCCCCCCEEEcccCcCCc----cChhhh
Q 040280 175 LRLDLSENQLN----GSIPLSFGNLNNLTMMSLFSDSLSGS----IPPNL--GNLKSLSTLRLHINQLNG----VISPSI 240 (271)
Q Consensus 175 ~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~--~~l~~L~~L~l~~n~i~~----~~~~~~ 240 (271)
+.|++++|.++ ..+|..+..+++|+.|++++|.+++. ++..+ +.+++|+.|++++|.+++ .+|..+
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 99999999985 46788888899999999999998764 45555 348899999999999987 467766
Q ss_pred -cCCCCCCEEeCccCcccccCc
Q 040280 241 -ANLSSLRTLFLYNNGLYGFVP 261 (271)
Q Consensus 241 -~~l~~L~~L~l~~n~l~~~~p 261 (271)
.++++|++|++++|++++..|
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSH
T ss_pred HhcCCCceEEEccCCcCCcchh
Confidence 568999999999999987654
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=4.8e-20 Score=163.89 Aligned_cols=183 Identities=17% Similarity=0.132 Sum_probs=117.3
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC--------CCCCCcEEEcc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE--------NLKYLSTLDLS 132 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~--------~l~~L~~L~l~ 132 (271)
..+++.|++++|++.+. .++.+++|++|++++|.+.+. + +..+++|++|+++.+ .+++|++|+++
T Consensus 63 l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred cCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECC
Confidence 35777888888877652 267777888888888877763 2 677777888877653 44567777777
Q ss_pred CCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCC
Q 040280 133 QNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSI 212 (271)
Q Consensus 133 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 212 (271)
+|.+++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++.
T Consensus 136 ~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 136 RNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp TSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-
T ss_pred CCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-
Confidence 7777753 2666677777777776544343 35566667777777666664 33 55666666666666666643
Q ss_pred cccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcccc
Q 040280 213 PPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264 (271)
Q Consensus 213 p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 264 (271)
.++.+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+
T Consensus 207 --~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred --ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 25556666666666666665 33 5556666666666666665433333
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.6e-22 Score=171.32 Aligned_cols=194 Identities=20% Similarity=0.174 Sum_probs=145.3
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCccc-CchhhccCCCCCEEecCC-----------CCCCCCcEE
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGI-IPPQVGNLSELLHLDLVL-----------ENLKYLSTL 129 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-----------~~l~~L~~L 129 (271)
..++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+++. ..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4678888888888766554 55688899999988887755 777788888888888865 346788888
Q ss_pred EccCC-cCCCc-cccccCCCCCCCEEEcccC-cCCCc-cCccccCCC-CCCEEEccCC--cCC-CccchhccCCCCCCEE
Q 040280 130 DLSQN-QLSGS-ISFSLGKLSSLDLLYLYSN-SFSGS-IPSIIGNFK-SLLRLDLSEN--QLN-GSIPLSFGNLNNLTMM 201 (271)
Q Consensus 130 ~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~~~-~~~p~~~~~l~~L~~L 201 (271)
++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++| .++ ..++..+..+++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 88888 56643 5556777888888888888 77643 556677788 8888888888 444 3456677778888888
Q ss_pred EeecCc-CCCCCcccccCCCCCCEEEcccCc-CCccChhhhcCCCCCCEEeCccCcccc
Q 040280 202 SLFSDS-LSGSIPPNLGNLKSLSTLRLHINQ-LNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 202 ~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 888888 665666677888888888888884 33332235777888888888888 543
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=8.6e-22 Score=168.08 Aligned_cols=201 Identities=21% Similarity=0.225 Sum_probs=139.8
Q ss_pred CCEEEEEcCCCCCccc-cChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC-------------CCCCCc
Q 040280 62 GRVISIDLSSMGLNGA-LQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE-------------NLKYLS 127 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~-------------~l~~L~ 127 (271)
.+++.|++++|.+.+. ++. .+..+++|++|++++|.+.+..+..+..+++|++|+++.+ .+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 5778888888877654 555 6777888888888888877777777878888888888664 346788
Q ss_pred EEEccCC-cCCCc-cccccCCCC-CCCEEEcccC--cCC-CccCccccCCCCCCEEEccCCc-CCCccchhccCCCCCCE
Q 040280 128 TLDLSQN-QLSGS-ISFSLGKLS-SLDLLYLYSN--SFS-GSIPSIIGNFKSLLRLDLSENQ-LNGSIPLSFGNLNNLTM 200 (271)
Q Consensus 128 ~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~ 200 (271)
+|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 8888888 77753 455667777 8888888887 444 3455666677888888888887 56566667777888888
Q ss_pred EEeecCc-CCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcccccc
Q 040280 201 MSLFSDS-LSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGC 266 (271)
Q Consensus 201 L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 266 (271)
|++++|. +.......+..+++|+.|++++| +.+..-..+. ..++.|++++|++++..|..+++
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 8888874 22221224667788888888888 5433323332 23455557888888877776664
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=3.2e-20 Score=165.07 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=80.4
Q ss_pred ccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCC--------CCC
Q 040280 53 WVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLE--------NLK 124 (271)
Q Consensus 53 ~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~--------~l~ 124 (271)
..++......+++.|++++|.+.+. .++.+++|++|++++|.+.+. + +..+++|++|+++.+ .++
T Consensus 76 l~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~ 148 (457)
T 3bz5_A 76 ITTLDLSQNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNT 148 (457)
T ss_dssp CSCCCCTTCTTCSEEECCSSCCSCC----CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCT
T ss_pred CCeEccccCCCCCEEECcCCCCcee----ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCC
Confidence 3333333445677777777777652 266677777777777766652 3 566666666666542 234
Q ss_pred CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEee
Q 040280 125 YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLF 204 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 204 (271)
+|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|+.|+++
T Consensus 149 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 149 QLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCS 220 (457)
T ss_dssp TCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECC
T ss_pred cCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECc
Confidence 4555555555333222 24444455555555554442 22 34444444444444444422 13334444444444
Q ss_pred cCcCCCCCcccccCCCCCCEEEcccCcCC
Q 040280 205 SDSLSGSIPPNLGNLKSLSTLRLHINQLN 233 (271)
Q Consensus 205 ~n~l~~~~p~~~~~l~~L~~L~l~~n~i~ 233 (271)
+|.+++ +| +..+++|+.|++++|.++
T Consensus 221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 221 SNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp SSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred CCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 444443 22 333344444444444443
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=4e-20 Score=156.22 Aligned_cols=187 Identities=23% Similarity=0.294 Sum_probs=154.0
Q ss_pred EcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------CCCCCCcEEEccCCcCCC
Q 040280 68 DLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------ENLKYLSTLDLSQNQLSG 138 (271)
Q Consensus 68 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~l~~L~~L~l~~n~~~~ 138 (271)
.+....+...+ .+..+++|++|++++|.+.. ++ .+..+++|++|+++. ..+++|++|++++|.+.+
T Consensus 25 ~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV---TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEE---CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCcee---cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC
Confidence 34455555433 24567799999999999975 44 688999999999976 455789999999999985
Q ss_pred ccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccC
Q 040280 139 SISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGN 218 (271)
Q Consensus 139 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 218 (271)
. +.+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++. +..
T Consensus 100 ~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~ 171 (308)
T 1h6u_A 100 V--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LAN 171 (308)
T ss_dssp C--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred c--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcC
Confidence 3 378999999999999999984 44 38999999999999999985444 7889999999999999985 444 889
Q ss_pred CCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 219 LKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 219 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
+++|+.|++++|.+++..+ +..+++|++|++++|++++. + .+..++.|+
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~ 220 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV-S-PLANTSNLF 220 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc-c-cccCCCCCC
Confidence 9999999999999986543 88899999999999999854 4 377777764
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=151.17 Aligned_cols=165 Identities=22% Similarity=0.267 Sum_probs=130.9
Q ss_pred CCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCc-hhhccCCCCCEEecCCC
Q 040280 43 HSKPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIP-PQVGNLSELLHLDLVLE 121 (271)
Q Consensus 43 ~~~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~ 121 (271)
..||..|.|.|.. ++++++.++ .+|. .+ .+.+++|++++|.+.+..+ ..|..+
T Consensus 3 ~~CP~~C~C~~~~-----------l~~s~n~l~-~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l----------- 56 (220)
T 2v70_A 3 LACPEKCRCEGTT-----------VDCSNQKLN-KIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKL----------- 56 (220)
T ss_dssp -CCCTTCEEETTE-----------EECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGC-----------
T ss_pred CCCCCCCEECCCE-----------eEeCCCCcc-cCcc-CC--CCCCCEEEcCCCcCCccCchhhhccC-----------
Confidence 5699889888754 555566665 4565 33 2457899999999987644 345554
Q ss_pred CCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEE
Q 040280 122 NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMM 201 (271)
Q Consensus 122 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 201 (271)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|
T Consensus 57 --~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 57 --PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp --TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred --CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 455678888888886666788899999999999999987777778899999999999999997778888899999999
Q ss_pred EeecCcCCCCCcccccCCCCCCEEEcccCcCCcc
Q 040280 202 SLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGV 235 (271)
Q Consensus 202 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~ 235 (271)
++++|.+++..|..+..+++|+.|++++|.+...
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999999877788888899999999999988743
No 84
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=4.7e-20 Score=149.25 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=128.0
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcE
Q 040280 49 SPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLST 128 (271)
Q Consensus 49 ~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~ 128 (271)
+.|.|.++.|... ++. .+|. .+ .++|++|++++|.+.+..|..|..+++ |++
T Consensus 17 ~~Cs~~~v~c~~~-----------~l~-~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~-------------L~~ 68 (229)
T 3e6j_A 17 CSCSGTTVDCRSK-----------RHA-SVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLIN-------------LKE 68 (229)
T ss_dssp CEEETTEEECTTS-----------CCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTT-------------CCE
T ss_pred CEEeCCEeEccCC-----------CcC-ccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccC-------------CcE
Confidence 7899999888642 332 4554 33 278999999999999877877766554 557
Q ss_pred EEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcC
Q 040280 129 LDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSL 208 (271)
Q Consensus 129 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 208 (271)
|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 778888887555566788999999999999998666667888999999999999998 7788888899999999999999
Q ss_pred CCCCcccccCCCCCCEEEcccCcCCccC
Q 040280 209 SGSIPPNLGNLKSLSTLRLHINQLNGVI 236 (271)
Q Consensus 209 ~~~~p~~~~~l~~L~~L~l~~n~i~~~~ 236 (271)
++..+..+..+++|+.|++++|.+....
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 8665667888899999999999887543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.1e-22 Score=174.27 Aligned_cols=211 Identities=18% Similarity=0.123 Sum_probs=166.6
Q ss_pred CCCEEEEEcCCCCCccccChh---hhCCCCCCcEEECCCC---CCcccCchhh-------ccCCCCCEEecCCCC-----
Q 040280 61 VGRVISIDLSSMGLNGALQKF---AFSSFPHLMHFNLSFN---LFFGIIPPQV-------GNLSELLHLDLVLEN----- 122 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~---~~~~l~~L~~L~l~~n---~l~~~~~~~~-------~~l~~L~~L~l~~~~----- 122 (271)
..+++.|+|++|++....+.. .+..+++|++|++++| .+.+.+|..+ ..+++|++|+++.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 357999999999987653321 4778999999999996 4445566555 789999999997743
Q ss_pred ----------CCCCcEEEccCCcCCCccccc----cCCC---------CCCCEEEcccCcCC-CccC---ccccCCCCCC
Q 040280 123 ----------LKYLSTLDLSQNQLSGSISFS----LGKL---------SSLDLLYLYSNSFS-GSIP---SIIGNFKSLL 175 (271)
Q Consensus 123 ----------l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~ 175 (271)
+++|++|++++|.+....+.. +..+ ++|++|++++|.+. +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 467999999999997443333 3334 89999999999987 3444 4677889999
Q ss_pred EEEccCCcCCC-----ccchhccCCCCCCEEEeecCcCC----CCCcccccCCCCCCEEEcccCcCCcc----Chhhhc-
Q 040280 176 RLDLSENQLNG-----SIPLSFGNLNNLTMMSLFSDSLS----GSIPPNLGNLKSLSTLRLHINQLNGV----ISPSIA- 241 (271)
Q Consensus 176 ~L~l~~n~~~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~i~~~----~~~~~~- 241 (271)
+|++++|.++. ..+..+..+++|+.|++++|.++ ..+|..+..+++|+.|++++|.+.+. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999999873 23447788999999999999985 46777888999999999999999865 456664
Q ss_pred -CCCCCCEEeCccCcccc----cCcccc-ccCCCCC
Q 040280 242 -NLSSLRTLFLYNNGLYG----FVPEEI-GCCLFPN 271 (271)
Q Consensus 242 -~l~~L~~L~l~~n~l~~----~~p~~~-~~l~~l~ 271 (271)
.+++|+.|++++|++++ .+|..+ .+++.|+
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 38999999999999997 488777 5566653
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.3e-20 Score=148.70 Aligned_cols=179 Identities=22% Similarity=0.222 Sum_probs=146.2
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSI 140 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~ 140 (271)
..+++.|++++|++.+..+. .|..+++|++|++++|.+.+..+..|..++ +|++|++++|.+++..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLT-------------SLTYLNLSTNQLQSLP 92 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCT-------------TCCEEECCSSCCCCCC
T ss_pred CCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCC-------------CcCEEECCCCcCCccC
Confidence 35799999999999854444 789999999999999999876665566554 5667888888888666
Q ss_pred ccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCC
Q 040280 141 SFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLK 220 (271)
Q Consensus 141 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 220 (271)
+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .++
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~ 165 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCP 165 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTT
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCC
Confidence 6678999999999999999996666678999999999999999997667678899999999999997664 356
Q ss_pred CCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcccc
Q 040280 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264 (271)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 264 (271)
+|+.|+++.|.+++.+|..++.++. ++..|...+..+..+
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~~ 205 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRSI 205 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGGC
T ss_pred CHHHHHHHHHhCCceeeccCccccC----CccccccCCCcceee
Confidence 8999999999999999998887655 455555555555555
No 87
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=4.1e-20 Score=148.73 Aligned_cols=155 Identities=21% Similarity=0.202 Sum_probs=136.9
Q ss_pred cEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccc-cccCCCCCCCEEEcccCcCCCccCccc
Q 040280 90 MHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSIS-FSLGKLSSLDLLYLYSNSFSGSIPSII 168 (271)
Q Consensus 90 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l 168 (271)
+++++++|.++. +|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|
T Consensus 14 ~~l~~s~n~l~~-iP~~~~---------------~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 77 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP---------------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC---------------TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred CEeEeCCCCccc-CccCCC---------------CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh
Confidence 589999999874 565443 245689999999986644 458899999999999999997777789
Q ss_pred cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCE
Q 040280 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRT 248 (271)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 248 (271)
..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 99999999999999999888888999999999999999999888888999999999999999999988999999999999
Q ss_pred EeCccCcccccC
Q 040280 249 LFLYNNGLYGFV 260 (271)
Q Consensus 249 L~l~~n~l~~~~ 260 (271)
|++++|++++..
T Consensus 158 L~L~~N~l~c~c 169 (220)
T 2v70_A 158 LNLLANPFNCNC 169 (220)
T ss_dssp EECCSCCEECSG
T ss_pred EEecCcCCcCCC
Confidence 999999987543
No 88
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=5.3e-20 Score=148.08 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=135.1
Q ss_pred cEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCcccc
Q 040280 90 MHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIG 169 (271)
Q Consensus 90 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 169 (271)
+.++++++.++. +|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..|..|.
T Consensus 14 ~~v~c~~~~l~~-iP~~l~---------------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP---------------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC---------------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEEEcCCCCcCc-CCCccC---------------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence 578888888874 555432 4677899999999976677899999999999999999977789999
Q ss_pred CCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEE
Q 040280 170 NFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTL 249 (271)
Q Consensus 170 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 249 (271)
.+++|++|++++|.++...+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 99999999999999996666677899999999999999998888889999999999999999998888889999999999
Q ss_pred eCccCcccc
Q 040280 250 FLYNNGLYG 258 (271)
Q Consensus 250 ~l~~n~l~~ 258 (271)
++++|++..
T Consensus 158 ~L~~N~~~c 166 (220)
T 2v9t_B 158 HLAQNPFIC 166 (220)
T ss_dssp ECCSSCEEC
T ss_pred EeCCCCcCC
Confidence 999999864
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=3.4e-20 Score=170.47 Aligned_cols=181 Identities=28% Similarity=0.280 Sum_probs=128.4
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcccc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISF 142 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~ 142 (271)
.+++|+|++|++++ +++..|..+++|++|+|++|.+.++.+.+|.++++ |++|++++|.+++..+.
T Consensus 53 ~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~-------------L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 53 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-------------LSTLILTGNPIQSLALG 118 (635)
T ss_dssp TCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT-------------CCEEECTTCCCCEECGG
T ss_pred CCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC-------------CCEEEccCCcCCCCCHH
Confidence 57788888888874 44437888888888888888887766666765544 44677777777755556
Q ss_pred ccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCC-ccchhccCCCCCCEEEeecCcCCCCCcccccCCCC
Q 040280 143 SLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNG-SIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKS 221 (271)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 221 (271)
.|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 78888888888888888876555668888888888888888765 35677778888888888888887666665543332
Q ss_pred ----CCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 222 ----LSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 222 ----L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
...++++.|.+....+..+. ...+..+++.+|....
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSH
T ss_pred hhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccc
Confidence 34677888887755444333 3455677777775543
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=2.6e-19 Score=144.92 Aligned_cols=156 Identities=24% Similarity=0.267 Sum_probs=135.3
Q ss_pred CcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccc
Q 040280 89 LMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSII 168 (271)
Q Consensus 89 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 168 (271)
-+.++.+++.+. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---------------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCEeEccCCCcC-ccCCCCC---------------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc
Confidence 456888888776 4554332 567899999999998888899999999999999999985555678
Q ss_pred cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCE
Q 040280 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRT 248 (271)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 248 (271)
..+++|+.|++++|.+++..+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 99999999999999999777777889999999999999999 67888899999999999999999777778999999999
Q ss_pred EeCccCcccccCc
Q 040280 249 LFLYNNGLYGFVP 261 (271)
Q Consensus 249 L~l~~n~l~~~~p 261 (271)
|++++|++....+
T Consensus 164 L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 164 AYLFGNPWDCECR 176 (229)
T ss_dssp EECTTSCBCTTBG
T ss_pred EEeeCCCccCCcc
Confidence 9999999986543
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=2.2e-19 Score=165.07 Aligned_cols=136 Identities=27% Similarity=0.350 Sum_probs=79.6
Q ss_pred CCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCC-CccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCE
Q 040280 122 NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFS-GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTM 200 (271)
Q Consensus 122 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 200 (271)
.+++++.++++.|.+....+..+..++.+++|++++|.+. +..|..|..+++|++|++++|++++..|..|.++++|+.
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 3445555555555555555555555666666666665532 234555566666666666666666555555666666666
Q ss_pred EEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCC-CCCCEEeCccCccc
Q 040280 201 MSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANL-SSLRTLFLYNNGLY 257 (271)
Q Consensus 201 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~ 257 (271)
|++++|.+++..+..+..+++|++|++++|++++..|..+..+ ++|++|++++|+++
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 6666666665555555666666666666666665555555555 45666666666554
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2e-19 Score=150.77 Aligned_cols=170 Identities=25% Similarity=0.350 Sum_probs=133.0
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSI 140 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~ 140 (271)
..+++.|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..++ +|++|++++|.+.+ +
T Consensus 45 l~~L~~L~l~~~~i~~-~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~-------------~L~~L~l~~n~l~~-~ 105 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLK-------------NLGWLFLDENKVKD-L 105 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCT-------------TCCEEECCSSCCCC-G
T ss_pred cCcccEEEccCCCccc-Ch--hHhcCCCCCEEEccCCccCCCcc--cccCC-------------CCCEEECCCCcCCC-C
Confidence 3478899999998874 43 47889999999999999986443 65554 45567777777764 2
Q ss_pred ccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCC
Q 040280 141 SFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLK 220 (271)
Q Consensus 141 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 220 (271)
+.+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..++
T Consensus 106 -~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 106 -SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178 (291)
T ss_dssp -GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC
Confidence 348888899999999998874 3 4678888999999999988854 567788899999999998886444 78888
Q ss_pred CCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
+|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 179 ~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 999999999988854 3 47888899999999998874
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.5e-20 Score=167.06 Aligned_cols=192 Identities=22% Similarity=0.211 Sum_probs=102.8
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCC-------------CEEecCCCCCC----
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSEL-------------LHLDLVLENLK---- 124 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~l~~~~l~---- 124 (271)
.++++|+++++++ +.+|. .++++++|++|++++|.+.+.+|..++.+.+| ++|+++.+.+.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 3667777777777 67777 67777777777777777777777776665543 66666554332
Q ss_pred ---CCcEEEccCCcCCCccccccC----------------CC-CCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcC
Q 040280 125 ---YLSTLDLSQNQLSGSISFSLG----------------KL-SSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQL 184 (271)
Q Consensus 125 ---~L~~L~l~~n~~~~~~~~~l~----------------~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 184 (271)
+|++|++++|.+++ +|..+. .. ++|++|++++|.+++ +| .++.+++|++|++++|.+
T Consensus 89 ~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcC
Confidence 35666666666553 332210 11 456666666666663 55 466666677777776666
Q ss_pred CCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCcccc
Q 040280 185 NGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEI 264 (271)
Q Consensus 185 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 264 (271)
++ +|.. ..+|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|.. .++|++|++++|+++ .+|. +
T Consensus 166 ~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~ 233 (454)
T 1jl5_A 166 KK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-L 233 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-C
T ss_pred cc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-c
Confidence 63 4432 2466777777776664 44 36667777777777777664 3322 246777777777776 6664 6
Q ss_pred ccCCCC
Q 040280 265 GCCLFP 270 (271)
Q Consensus 265 ~~l~~l 270 (271)
+.++.|
T Consensus 234 ~~l~~L 239 (454)
T 1jl5_A 234 QNLPFL 239 (454)
T ss_dssp TTCTTC
T ss_pred CCCCCC
Confidence 666655
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6.9e-20 Score=149.10 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=140.1
Q ss_pred CCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCc-CCCccccccCCCCCCCEEEccc-CcCCCcc
Q 040280 87 PHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQ-LSGSISFSLGKLSSLDLLYLYS-NSFSGSI 164 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~ 164 (271)
++|++|++++|.+.+..+..|..++ +|++|++++|. ++...+..|.++++|++|++++ |.+++..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~-------------~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLP-------------NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCT-------------TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CcccEEEEeCCcceEECHHHccCCC-------------CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3899999999999987776776655 46688888886 7755566899999999999999 9998666
Q ss_pred CccccCCCCCCEEEccCCcCCCccchhccCCCCCC---EEEeecC-cCCCCCcccccCCCCCC-EEEcccCcCCccChhh
Q 040280 165 PSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLT---MMSLFSD-SLSGSIPPNLGNLKSLS-TLRLHINQLNGVISPS 239 (271)
Q Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~n~i~~~~~~~ 239 (271)
+..|..+++|++|++++|.+++ +|. +..+++|+ .|++++| .+++..+..+..+++|+ +|++++|.++...+..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 6789999999999999999985 666 88888888 9999999 88866666789999999 9999999998544444
Q ss_pred hcCCCCCCEEeCccCc-ccccCccccccC-CCCC
Q 040280 240 IANLSSLRTLFLYNNG-LYGFVPEEIGCC-LFPN 271 (271)
Q Consensus 240 ~~~l~~L~~L~l~~n~-l~~~~p~~~~~l-~~l~ 271 (271)
+.. ++|+.|++++|+ +++..+..|..+ +.|+
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 555 899999999995 986556778777 6653
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=157.33 Aligned_cols=190 Identities=21% Similarity=0.201 Sum_probs=158.7
Q ss_pred CCEEEEEcCCCCCccccChhhh--CCCCCCcEEECCCCCCcccCc----hhhccCCCCCEEecCC-----------CCCC
Q 040280 62 GRVISIDLSSMGLNGALQKFAF--SSFPHLMHFNLSFNLFFGIIP----PQVGNLSELLHLDLVL-----------ENLK 124 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~-----------~~l~ 124 (271)
.+++.|++++|.+.+..|. .+ ..+++|++|++++|.+.+..+ ..+..+++|++|+++. ..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3699999999999988888 66 889999999999999987555 4456799999999965 3667
Q ss_pred CCcEEEccCCcCCCc--cc--cccCCCCCCCEEEcccCcCCCccCc----cccCCCCCCEEEccCCcCCCccchhccCC-
Q 040280 125 YLSTLDLSQNQLSGS--IS--FSLGKLSSLDLLYLYSNSFSGSIPS----IIGNFKSLLRLDLSENQLNGSIPLSFGNL- 195 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~--~~--~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~p~~~~~l- 195 (271)
+|++|++++|.+.+. ++ ..+..+++|++|++++|.++ .++. .+..+++|++|++++|.+++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 899999999998742 22 33478999999999999997 4443 25678999999999999998778777766
Q ss_pred --CCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 196 --NNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 196 --~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|+.|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 6777664 7999999999999964 32 6788999999999999974
No 96
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=4.7e-19 Score=162.60 Aligned_cols=84 Identities=27% Similarity=0.267 Sum_probs=43.2
Q ss_pred CCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCc
Q 040280 173 SLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLY 252 (271)
Q Consensus 173 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 252 (271)
+|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 34444444444442 22 23345555555555554 2333 3345666666666655 445556666666666666
Q ss_pred cCcccccCccccc
Q 040280 253 NNGLYGFVPEEIG 265 (271)
Q Consensus 253 ~n~l~~~~p~~~~ 265 (271)
+|++++.+|..+.
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 6666655555443
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=2.5e-20 Score=160.90 Aligned_cols=195 Identities=22% Similarity=0.228 Sum_probs=148.0
Q ss_pred CCEEEEEcCCCCCccccC----hhhhCCCC-CCcEEECCCCCCcccCchhhccC-----CCCCEEecCCCCC--------
Q 040280 62 GRVISIDLSSMGLNGALQ----KFAFSSFP-HLMHFNLSFNLFFGIIPPQVGNL-----SELLHLDLVLENL-------- 123 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~----~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~~~l-------- 123 (271)
..++.|+|++|.+.+.-+ . .+..++ +|++|++++|.+.+..+..+..+ ++|++|+++.+.+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 359999999999875443 3 677888 89999999999988777777775 8999999977433
Q ss_pred --------CCCcEEEccCCcCCCccccc----cCC-CCCCCEEEcccCcCCCc----cCccccCCC-CCCEEEccCCcCC
Q 040280 124 --------KYLSTLDLSQNQLSGSISFS----LGK-LSSLDLLYLYSNSFSGS----IPSIIGNFK-SLLRLDLSENQLN 185 (271)
Q Consensus 124 --------~~L~~L~l~~n~~~~~~~~~----l~~-l~~L~~L~l~~n~~~~~----~~~~l~~l~-~L~~L~l~~n~~~ 185 (271)
++|++|++++|.+++..+.. +.. .++|++|++++|.+... ++..+...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 68999999999988655543 344 36899999999988743 334445555 8999999999988
Q ss_pred Cccchhc----cCC-CCCCEEEeecCcCCCC----CcccccC-CCCCCEEEcccCcCCccChh----hhcCCCCCCEEeC
Q 040280 186 GSIPLSF----GNL-NNLTMMSLFSDSLSGS----IPPNLGN-LKSLSTLRLHINQLNGVISP----SIANLSSLRTLFL 251 (271)
Q Consensus 186 ~~~p~~~----~~l-~~L~~L~l~~n~l~~~----~p~~~~~-l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l 251 (271)
+..+..+ ... ++|+.|++++|.+++. ++..+.. .++|++|++++|.+.+..+. .+..+++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 6655433 344 5899999999998753 3444444 45899999999999876553 3466789999999
Q ss_pred ccCccc
Q 040280 252 YNNGLY 257 (271)
Q Consensus 252 ~~n~l~ 257 (271)
++|.+.
T Consensus 261 ~~n~l~ 266 (362)
T 3goz_A 261 DYDIVK 266 (362)
T ss_dssp EHHHHT
T ss_pred ccCCcc
Confidence 999854
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=5.2e-19 Score=162.01 Aligned_cols=170 Identities=25% Similarity=0.343 Sum_probs=115.6
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSI 140 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~ 140 (271)
...++.|+++++.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+ .|++++|.+.+ +
T Consensus 42 L~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~-------------~L~Ls~N~l~~-l 102 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLG-------------WLFLDENKIKD-L 102 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCC-------------EEECCSSCCCC-C
T ss_pred CCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEeeCCCCCCChh--hccCCCCC-------------EEECcCCCCCC-C
Confidence 4477888898888863 44 47888999999999998886544 66665555 55555555553 2
Q ss_pred ccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCC
Q 040280 141 SFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLK 220 (271)
Q Consensus 141 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 220 (271)
+.+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..++
T Consensus 103 -~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~ 175 (605)
T 1m9s_A 103 -SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT 175 (605)
T ss_dssp -TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC
Confidence 256667777777777777663 2 3466677777777777777643 456667777777777777765444 66677
Q ss_pred CCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccc
Q 040280 221 SLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
+|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+
T Consensus 176 ~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 176 KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 777777777777653 346667777777777777664
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.9e-19 Score=139.91 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=125.0
Q ss_pred hCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCC
Q 040280 83 FSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSG 162 (271)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 162 (271)
...+++|++|++++|.+. .+| .+..++ +|++|++++|.+. .+..+..+++|++|++++|.+++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~-------------~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~ 102 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAH-------------NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTS 102 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCT-------------TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBG
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCC-------------CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCc
Confidence 355678999999999887 344 455544 4567778877665 33478889999999999999987
Q ss_pred ccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCc-CCCCCcccccCCCCCCEEEcccCcCCccChhhhc
Q 040280 163 SIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDS-LSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIA 241 (271)
Q Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 241 (271)
..+..++.+++|++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++. + .+.
T Consensus 103 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~ 178 (197)
T 4ezg_A 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIE 178 (197)
T ss_dssp GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGG
T ss_pred ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-Hhc
Confidence 778889999999999999999987778889999999999999998 65 555 588899999999999999864 3 788
Q ss_pred CCCCCCEEeCccCcccc
Q 040280 242 NLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 242 ~l~~L~~L~l~~n~l~~ 258 (271)
.+++|+.|++++|++.+
T Consensus 179 ~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEEECBC----
T ss_pred cCCCCCEEEeeCcccCC
Confidence 89999999999999864
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=1.2e-20 Score=162.84 Aligned_cols=200 Identities=19% Similarity=0.193 Sum_probs=153.0
Q ss_pred CEEEEEcCCCCCccccChhhhCCC-----CCCcEEECCCCCCcccCchhhcc----C-CCCCEEecCCCC----------
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSF-----PHLMHFNLSFNLFFGIIPPQVGN----L-SELLHLDLVLEN---------- 122 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~l~~~~---------- 122 (271)
+++.|+|++|.+.+..+. .+..+ ++|++|++++|.+.+..+..+.. + ++|++|+++.+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 799999999999866554 55553 89999999999998777765444 4 899999997732
Q ss_pred ------CCCCcEEEccCCcCCCcc----ccccCCCC-CCCEEEcccCcCCCccCcc----ccCC-CCCCEEEccCCcCCC
Q 040280 123 ------LKYLSTLDLSQNQLSGSI----SFSLGKLS-SLDLLYLYSNSFSGSIPSI----IGNF-KSLLRLDLSENQLNG 186 (271)
Q Consensus 123 ------l~~L~~L~l~~n~~~~~~----~~~l~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~ 186 (271)
.++|++|++++|.+.+.. +..+..++ +|++|++++|.+++..+.. +... ++|++|++++|.++.
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 258999999999998533 34445565 9999999999997555543 3445 599999999999885
Q ss_pred c----cchhccC-CCCCCEEEeecCcCCCCCc----ccccCCCCCCEEEcccCcCCccC-------hhhhcCCCCCCEEe
Q 040280 187 S----IPLSFGN-LNNLTMMSLFSDSLSGSIP----PNLGNLKSLSTLRLHINQLNGVI-------SPSIANLSSLRTLF 250 (271)
Q Consensus 187 ~----~p~~~~~-l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~i~~~~-------~~~~~~l~~L~~L~ 250 (271)
. ++..+.. .++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|+
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 2 4555555 4699999999999986544 33567889999999999855433 33566788899999
Q ss_pred CccCcccccCccc
Q 040280 251 LYNNGLYGFVPEE 263 (271)
Q Consensus 251 l~~n~l~~~~p~~ 263 (271)
+++|++....+..
T Consensus 291 L~~N~l~~~~~~~ 303 (362)
T 3goz_A 291 KNGKEIHPSHSIP 303 (362)
T ss_dssp TTSCBCCGGGCHH
T ss_pred cCCCcCCCcchHH
Confidence 9999998764433
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=7.9e-18 Score=154.48 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=51.6
Q ss_pred CCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 196 NNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 196 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
++|+.|++++|.+++ +| ..+++|+.|++++|.++. +|. .+++|+.|++++|+++ .+|..+.+++.|+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 567777777777764 44 345678888888888873 444 5688999999999998 8899999988774
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=8e-19 Score=151.47 Aligned_cols=163 Identities=23% Similarity=0.218 Sum_probs=136.7
Q ss_pred cEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccC-CCCCCCEEEcccCcCCCccCccc
Q 040280 90 MHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLG-KLSSLDLLYLYSNSFSGSIPSII 168 (271)
Q Consensus 90 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l 168 (271)
+.++++++.+.. +|..+. +.++.|++++|.+++..+..+. ++++|++|++++|.+++..+..|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~---------------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP---------------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC---------------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CEEEeCCCCcCc-cCccCC---------------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 578999988874 565443 3467899999999976677777 99999999999999997777789
Q ss_pred cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhh---cCCCC
Q 040280 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSI---ANLSS 245 (271)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~---~~l~~ 245 (271)
..+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 999999999999999997767788999999999999999997778889999999999999999997655555 56899
Q ss_pred CCEEeCccCcccccCccccccCC
Q 040280 246 LRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 246 L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
|+.|+|++|++++..+..+..++
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSC
T ss_pred CCEEECCCCCCCccCHHHhhhcc
Confidence 99999999999954445555554
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=4.4e-18 Score=151.12 Aligned_cols=171 Identities=29% Similarity=0.347 Sum_probs=86.2
Q ss_pred EEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCC-------CCCcEEEccCCcC
Q 040280 64 VISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENL-------KYLSTLDLSQNQL 136 (271)
Q Consensus 64 l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l-------~~L~~L~l~~n~~ 136 (271)
++.|+++++++++ +|. . .++|++|++++|.+.+ +|.. .++|++|+++.+.+ ++|++|++++|.+
T Consensus 73 l~~L~l~~~~l~~-lp~-~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPE-L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 143 (454)
T ss_dssp CSEEECTTSCCSC-CCS-C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC
T ss_pred CCEEEecCCcccc-CCC-C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCC
Confidence 4566666666553 332 1 2456666666666654 4432 25566666655332 3566666666666
Q ss_pred CCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccc
Q 040280 137 SGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNL 216 (271)
Q Consensus 137 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 216 (271)
++ +| .+.++++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|...
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~ 214 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP 214 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc
Confidence 63 44 46666666666666666552 33322 355555555555553 33 34555555555555555543 22211
Q ss_pred cCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCccc
Q 040280 217 GNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 217 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
++|++|++++|.+. .+| .+..+++|++|++++|+++
T Consensus 215 ---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 215 ---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 24444444444444 233 2444444444444444444
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=7.7e-21 Score=177.84 Aligned_cols=225 Identities=24% Similarity=0.249 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhC
Q 040280 5 SSKEAFALLKWKRSLQNKNISLLSSWTLHFDNASNVPSHSKPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFS 84 (271)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~ 84 (271)
...++.++.++..++....+..-..|. . ..+ ..+.|.++.++. ++++.|+|.++.+.. .+. .+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~----~~~----~~~~~~~~~~s~-~~~~~l~L~~n~~~~-~~~-~~- 192 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPT-----G----DST----PSGTATNSAVST-PLTPKIELFANGKDE-ANQ-AL- 192 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCc-----C----CCC----ccccCCCceecC-CccceEEeeCCCCCc-chh-hH-
Confidence 345778888888887765455555564 2 012 345677776654 578899998888764 233 22
Q ss_pred CCCCCcEEECCCCCCcc---------cCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEc
Q 040280 85 SFPHLMHFNLSFNLFFG---------IIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYL 155 (271)
Q Consensus 85 ~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 155 (271)
++.++|+.+.+.+ ..+..+.. ++.|+.|++++|.+. .+|..+..+++|++|+|
T Consensus 193 ----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~-------------l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~L 254 (727)
T 4b8c_D 193 ----LQHKKLSQYSIDEDDDIENRMVMPKDSKYD-------------DQLWHALDLSNLQIF-NISANIFKYDFLTRLYL 254 (727)
T ss_dssp ---------------------------------C-------------CCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBC
T ss_pred ----hhcCccCcccccCccccccceecChhhhcc-------------CCCCcEEECCCCCCC-CCChhhcCCCCCCEEEe
Confidence 3333444443332 23444443 445667777777777 56666678888888888
Q ss_pred ccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCcc
Q 040280 156 YSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGV 235 (271)
Q Consensus 156 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~ 235 (271)
++|.++ .+|..|..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|+.|+|++|.+++.
T Consensus 255 s~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 255 NGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred eCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence 888887 77777888888888888888888 67877888888888888888886 6677788888888888888888877
Q ss_pred ChhhhcCCCC-CCEEeCccCcccccCccccccC
Q 040280 236 ISPSIANLSS-LRTLFLYNNGLYGFVPEEIGCC 267 (271)
Q Consensus 236 ~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l 267 (271)
+|..+..+.. ...+++++|.+++.+|..+..+
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l 364 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI 364 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred ChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence 7766543211 1235666666666666655443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.8e-18 Score=143.72 Aligned_cols=176 Identities=20% Similarity=0.287 Sum_probs=140.9
Q ss_pred EEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccC
Q 040280 66 SIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLG 145 (271)
Q Consensus 66 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~ 145 (271)
.+.+....+.+.. .+..+++|++|++++|.+... + .+..+ ++|++|++++|.+.+..+ +.
T Consensus 28 ~~~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~-~-~~~~l-------------~~L~~L~L~~n~l~~~~~--l~ 87 (291)
T 1h6t_A 28 KDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSV-Q-GIQYL-------------PNVTKLFLNGNKLTDIKP--LA 87 (291)
T ss_dssp HHHTTCSCTTSEE---CHHHHHTCCEEECTTSCCCCC-T-TGGGC-------------TTCCEEECCSSCCCCCGG--GT
T ss_pred HHHhcCCCccccc---chhhcCcccEEEccCCCcccC-h-hHhcC-------------CCCCEEEccCCccCCCcc--cc
Confidence 3445555555433 245678999999999988753 3 35544 456688888888885444 89
Q ss_pred CCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEE
Q 040280 146 KLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTL 225 (271)
Q Consensus 146 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 225 (271)
.+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|++|
T Consensus 88 ~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 99999999999999984 44 48999999999999999985 3 4578899999999999999864 568899999999
Q ss_pred EcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 226 RLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
++++|.+.+..+ +..+++|+.|++++|++++ +|. +..++.|+
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~ 203 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLD 203 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCS
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCC
Confidence 999999997654 8899999999999999984 554 77777764
No 106
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=8.7e-21 Score=168.51 Aligned_cols=173 Identities=18% Similarity=0.067 Sum_probs=97.5
Q ss_pred CCCcEEECCCCCCccc----CchhhccCCCCCEEecCCC----------------CCCCCcEEEccCCcCCCc----ccc
Q 040280 87 PHLMHFNLSFNLFFGI----IPPQVGNLSELLHLDLVLE----------------NLKYLSTLDLSQNQLSGS----ISF 142 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~~----------------~l~~L~~L~l~~n~~~~~----~~~ 142 (271)
++|++|++++|.+.+. ++..+..+++|++|+++.+ .+++|++|++++|.++.. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3445555555444432 2444445556666665442 245566666666665532 344
Q ss_pred ccCCCCCCCEEEcccCcCCCccCcccc-----CCCCCCEEEccCCcCCCc----cchhccCCCCCCEEEeecCcCCCCCc
Q 040280 143 SLGKLSSLDLLYLYSNSFSGSIPSIIG-----NFKSLLRLDLSENQLNGS----IPLSFGNLNNLTMMSLFSDSLSGSIP 213 (271)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p 213 (271)
.+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 455566666666666665432222222 124666666666666543 34455566777777777776654333
Q ss_pred cccc-----CCCCCCEEEcccCcCCc----cChhhhcCCCCCCEEeCccCccccc
Q 040280 214 PNLG-----NLKSLSTLRLHINQLNG----VISPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 214 ~~~~-----~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
..+. ..++|++|++++|.+++ .++..+..+++|++|++++|++++.
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3222 14577777777777765 5566666677777777777777654
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.7e-22 Score=183.94 Aligned_cols=185 Identities=20% Similarity=0.227 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCccccChhhhCCCCCCcEEECCCCC-------------CcccCchhhccCCCCCEEe-cCCCCCCCCcEE
Q 040280 64 VISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNL-------------FFGIIPPQVGNLSELLHLD-LVLENLKYLSTL 129 (271)
Q Consensus 64 l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~~~l~~L~~L 129 (271)
++.|+|++|.+. .+|. .++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+..|+.+
T Consensus 351 L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 351 LFRCELSVEKST-VLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp SSSCCCCHHHHH-HHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ceeccCChhhHH-hhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 334455555543 4554 55555555555554442 3334445555555555555 344444444444
Q ss_pred EccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCC
Q 040280 130 DLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLS 209 (271)
Q Consensus 130 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 209 (271)
.+.+|.+.. ++. ..|++|++++|.++ .+|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 429 ~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 429 FLLENSVLK-MEY-----ADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHH-HHH-----TTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhcccccc-cCc-----cCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 445555442 221 24888899998888 4665 888888999999999888 77888888889999999999888
Q ss_pred CCCcccccCCCCCCEEEcccCcCCccC-hhhhcCCCCCCEEeCccCcccccCc
Q 040280 210 GSIPPNLGNLKSLSTLRLHINQLNGVI-SPSIANLSSLRTLFLYNNGLYGFVP 261 (271)
Q Consensus 210 ~~~p~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p 261 (271)
+ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5 66 6888888999999999888776 8888888999999999998886544
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=8.9e-21 Score=168.45 Aligned_cols=210 Identities=16% Similarity=0.102 Sum_probs=114.1
Q ss_pred CCCEEEEEcCCCCCccccCh----hhhCCCCCCcEEECCCCCCcccC----chhhccCCCCCEEecCCCC----------
Q 040280 61 VGRVISIDLSSMGLNGALQK----FAFSSFPHLMHFNLSFNLFFGII----PPQVGNLSELLHLDLVLEN---------- 122 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~---------- 122 (271)
..+++.|++++|.+.+..+. ..+...++|++|++++|.+.+.. +..+..+++|++|+++.+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 45777778777776543222 01223456777777777766532 4455566777777776532
Q ss_pred ------CCCCcEEEccCCcCCCc----cccccCCCCCCCEEEcccCcCCCcc-----CccccCCCCCCEEEccCCcCCCc
Q 040280 123 ------LKYLSTLDLSQNQLSGS----ISFSLGKLSSLDLLYLYSNSFSGSI-----PSIIGNFKSLLRLDLSENQLNGS 187 (271)
Q Consensus 123 ------l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~~~~~ 187 (271)
.++|++|++++|.+++. ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.++..
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence 23667777777666642 3444555566666666666554211 11112344555555555555432
Q ss_pred ----cchhccCCCCC-----------------------------CEEEeecCcCCCC----CcccccCCCCCCEEEcccC
Q 040280 188 ----IPLSFGNLNNL-----------------------------TMMSLFSDSLSGS----IPPNLGNLKSLSTLRLHIN 230 (271)
Q Consensus 188 ----~p~~~~~l~~L-----------------------------~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n 230 (271)
++..+..+++| +.|++++|.+++. ++..+..+++|++|++++|
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 33334444444 4455544444432 2333445566677777777
Q ss_pred cCCccChhhhcC-----CCCCCEEeCccCcccc----cCccccccCCCC
Q 040280 231 QLNGVISPSIAN-----LSSLRTLFLYNNGLYG----FVPEEIGCCLFP 270 (271)
Q Consensus 231 ~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~p~~~~~l~~l 270 (271)
.+.+..+..+.. .++|++|++++|++++ .+|..+..++.|
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 666543333322 4577777777777765 566666655554
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=3.7e-18 Score=131.30 Aligned_cols=138 Identities=22% Similarity=0.249 Sum_probs=104.6
Q ss_pred CCCcEEEccCCcCC-CccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 124 KYLSTLDLSQNQLS-GSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 124 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45667777777776 55666677778888888888887743 6677788888888888888766777777788888888
Q ss_pred eecCcCCCCC-cccccCCCCCCEEEcccCcCCccCh---hhhcCCCCCCEEeCccCcccccCcccc
Q 040280 203 LFSDSLSGSI-PPNLGNLKSLSTLRLHINQLNGVIS---PSIANLSSLRTLFLYNNGLYGFVPEEI 264 (271)
Q Consensus 203 l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~ 264 (271)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. ++|+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 8888887532 2567888889999999998886655 47888899999999999887 666643
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=3.4e-18 Score=135.05 Aligned_cols=152 Identities=17% Similarity=0.242 Sum_probs=126.7
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSI 140 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~ 140 (271)
..+++.|+++++.+. .++ .+..+++|++|++++|.+.. +..+.. +++|++|++++|.+++..
T Consensus 43 l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~-------------l~~L~~L~l~~n~l~~~~ 104 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATN--YNPISG-------------LSNLERLRIMGKDVTSDK 104 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSC--CGGGTT-------------CTTCCEEEEECTTCBGGG
T ss_pred cCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCc--chhhhc-------------CCCCCEEEeECCccCccc
Confidence 347899999999998 555 48889999999999997653 334544 456778999999999778
Q ss_pred ccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCc-CCCccchhccCCCCCCEEEeecCcCCCCCcccccCC
Q 040280 141 SFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQ-LNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNL 219 (271)
Q Consensus 141 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 219 (271)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l 180 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDF 180 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGC
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccC
Confidence 8899999999999999999997778889999999999999998 66 555 68899999999999999985 44 58889
Q ss_pred CCCCEEEcccCcCCc
Q 040280 220 KSLSTLRLHINQLNG 234 (271)
Q Consensus 220 ~~L~~L~l~~n~i~~ 234 (271)
++|+.|++++|++.+
T Consensus 181 ~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 181 PKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSCCEEEECBC----
T ss_pred CCCCEEEeeCcccCC
Confidence 999999999999864
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=5.3e-18 Score=133.44 Aligned_cols=141 Identities=26% Similarity=0.327 Sum_probs=112.2
Q ss_pred CCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCch-hhccCCCCCEEecCCCCC
Q 040280 45 KPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPP-QVGNLSELLHLDLVLENL 123 (271)
Q Consensus 45 ~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l 123 (271)
||..|.|.|.. ++++++++. .+|. .+. .++++|++++|.+.+..+. .+..++
T Consensus 2 CP~~C~C~~~~-----------l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~------------ 54 (192)
T 1w8a_A 2 CPAMCHCEGTT-----------VDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLP------------ 54 (192)
T ss_dssp CCTTSEEETTE-----------EECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCT------------
T ss_pred cCCCCEECCCE-----------EEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCC------------
Confidence 88888888744 455666664 5666 443 3899999999999876554 365554
Q ss_pred CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEe
Q 040280 124 KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSL 203 (271)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 203 (271)
+|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++
T Consensus 55 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 55 -HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp -TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred -CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 5667888888888777888999999999999999998777777888999999999999998777888888899999999
Q ss_pred ecCcCCCCCc
Q 040280 204 FSDSLSGSIP 213 (271)
Q Consensus 204 ~~n~l~~~~p 213 (271)
++|.+.+..+
T Consensus 134 ~~N~l~c~c~ 143 (192)
T 1w8a_A 134 ASNPFNCNCH 143 (192)
T ss_dssp TTCCBCCSGG
T ss_pred CCCCccCcCc
Confidence 9998876543
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.8e-17 Score=150.50 Aligned_cols=160 Identities=22% Similarity=0.244 Sum_probs=134.7
Q ss_pred CCcEEECCCCCCcccCchhhccCCCCCEEecCCCCC-------CCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcC
Q 040280 88 HLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENL-------KYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSF 160 (271)
Q Consensus 88 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l-------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 160 (271)
+|+.|++++|.+.+ +|..+ .++|++|+++.+.+ ++|++|++++|.+++ +|. +.+ +|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC
Confidence 89999999999987 67655 37899999987654 689999999999996 666 655 999999999999
Q ss_pred CCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhh
Q 040280 161 SGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSI 240 (271)
Q Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~ 240 (271)
++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H
Confidence 85 666 67899999999999995 665 57899999999999996 776 65 89999999999998 5555 5
Q ss_pred cCCCCC-------CEEeCccCcccccCccccccCCCCC
Q 040280 241 ANLSSL-------RTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 241 ~~l~~L-------~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
.. +| +.|++++|+++ .+|..+..++.|+
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence 54 67 99999999998 7999888888763
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=8.8e-18 Score=132.17 Aligned_cols=132 Identities=24% Similarity=0.296 Sum_probs=107.0
Q ss_pred cEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcccc-ccCCCCCCCEEEcccCcCCCccCccc
Q 040280 90 MHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISF-SLGKLSSLDLLYLYSNSFSGSIPSII 168 (271)
Q Consensus 90 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l 168 (271)
++++++++.+. .+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---------------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---------------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred CEEEcCCCCcC-cCccCCC---------------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc
Confidence 78888888886 4665442 2567888888888855554 47888999999999999987778888
Q ss_pred cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccCh
Q 040280 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVIS 237 (271)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~ 237 (271)
..+++|++|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 889999999999999987777778888999999999999888778888888899999999998875543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=7.5e-18 Score=139.11 Aligned_cols=167 Identities=23% Similarity=0.293 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccc
Q 040280 64 VISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFS 143 (271)
Q Consensus 64 l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~ 143 (271)
++.++++++.+.+.. .+..+++|++|++++|.+.. ++ .+..+ ++|++|++++|.+++..+
T Consensus 21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l-------------~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFF-------------TNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGC-------------TTCCEEECCSSCCCCCGG--
T ss_pred HHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhC-------------CCCCEEECCCCccCCChh--
Confidence 445566666665322 35667777888888777763 33 34444 345566666666664333
Q ss_pred cCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCC
Q 040280 144 LGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLS 223 (271)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 223 (271)
+..+++|++|++++|.+++ ++. +.. ++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ .+..+++|+
T Consensus 81 l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~ 153 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLE 153 (263)
T ss_dssp GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCC
T ss_pred hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCC
Confidence 6777777777777777763 333 222 677777777777764 33 46677777777777777764 33 466677777
Q ss_pred EEEcccCcCCccChhhhcCCCCCCEEeCccCccccc
Q 040280 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 224 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
.|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 777777777755 5566777777777777777643
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.5e-17 Score=149.92 Aligned_cols=178 Identities=21% Similarity=0.290 Sum_probs=142.7
Q ss_pred EEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccc
Q 040280 64 VISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFS 143 (271)
Q Consensus 64 l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~ 143 (271)
+..+.+..+.+...+ .+..+++|+.|++++|.+... + .+..+ ++|+.|++++|.+.+..+
T Consensus 23 l~~l~l~~~~i~~~~---~~~~L~~L~~L~l~~n~i~~l-~-~l~~l-------------~~L~~L~Ls~N~l~~~~~-- 82 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSV-Q-GIQYL-------------PNVTKLFLNGNKLTDIKP-- 82 (605)
T ss_dssp HHHHHTTCSCTTSEE---CHHHHTTCCCCBCTTCCCCCC-T-TGGGC-------------TTCCEEECTTSCCCCCGG--
T ss_pred HHHHhccCCCccccc---chhcCCCCCEEECcCCCCCCC-h-HHccC-------------CCCCEEEeeCCCCCCChh--
Confidence 344456666665443 245678899999999988743 3 45544 456678888888885544
Q ss_pred cCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCC
Q 040280 144 LGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLS 223 (271)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 223 (271)
+..+++|++|+|++|.+.+ ++ .+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 8899999999999999984 44 78999999999999999985 3 3588999999999999999864 5688999999
Q ss_pred EEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 224 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
.|+|++|.+.+..| +..+++|+.|+|++|++++ +| .+..++.|+
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD 200 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence 99999999997665 8899999999999999985 44 577777763
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=5.6e-17 Score=125.74 Aligned_cols=139 Identities=25% Similarity=0.334 Sum_probs=85.7
Q ss_pred CCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCC
Q 040280 45 KPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLK 124 (271)
Q Consensus 45 ~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 124 (271)
||..|.|.|.++.|.. +++. .+|. .+ .++|++|++++|.+.+..+..+..++
T Consensus 1 Cp~~C~C~~~~l~~~~-----------~~l~-~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~------------- 52 (177)
T 2o6r_A 1 CPSRCSCSGTEIRCNS-----------KGLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFDKLT------------- 52 (177)
T ss_dssp CCTTCEEETTEEECCS-----------SCCS-SCCT-TC--CTTCSEEECCSSCCCCCCTTTTTTCT-------------
T ss_pred CcCCCEeCCCEEEecC-----------CCCc-cCCC-CC--CCCCcEEEeCCCcccEeCHHHhcCcc-------------
Confidence 7888999988877753 3443 3443 22 35788888888888765554454443
Q ss_pred CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEee
Q 040280 125 YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLF 204 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 204 (271)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 34466666666664444456667777777777777664444455666666666666666664444444555666666666
Q ss_pred cCcCCCC
Q 040280 205 SDSLSGS 211 (271)
Q Consensus 205 ~n~l~~~ 211 (271)
+|.+.+.
T Consensus 133 ~N~~~~~ 139 (177)
T 2o6r_A 133 TNPWDCS 139 (177)
T ss_dssp SSCBCCC
T ss_pred CCCeecc
Confidence 6655543
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=1.6e-17 Score=125.16 Aligned_cols=128 Identities=19% Similarity=0.261 Sum_probs=94.4
Q ss_pred CCCcEEEccCCcCC-CccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 124 KYLSTLDLSQNQLS-GSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 124 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45667777777776 56666677777888888888877744 5677778888888888888765777776778888888
Q ss_pred eecCcCCCC-CcccccCCCCCCEEEcccCcCCccCh---hhhcCCCCCCEEeCcc
Q 040280 203 LFSDSLSGS-IPPNLGNLKSLSTLRLHINQLNGVIS---PSIANLSSLRTLFLYN 253 (271)
Q Consensus 203 l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~ 253 (271)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888887752 23567778888888888888876655 4677788888887753
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=126.10 Aligned_cols=127 Identities=26% Similarity=0.310 Sum_probs=102.4
Q ss_pred cEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCcccc
Q 040280 90 MHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIG 169 (271)
Q Consensus 90 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 169 (271)
++++++++.+. .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---------------~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---------------RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---------------TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CEEEcCCCCCC-cCCCCCC---------------CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc
Confidence 67888888887 4554332 35678888888887 6677888888999999999998876677788
Q ss_pred CCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCC
Q 040280 170 NFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLN 233 (271)
Q Consensus 170 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~ 233 (271)
.+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8889999999999988777778888888999999998888655556788888899999888875
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.7e-16 Score=122.96 Aligned_cols=133 Identities=21% Similarity=0.216 Sum_probs=94.0
Q ss_pred CcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccc
Q 040280 89 LMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSII 168 (271)
Q Consensus 89 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 168 (271)
.+.++++++++.. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 9 ~~~l~~~~~~l~~-~p~~~---------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI---------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC---------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEecCCCCcc-CCCCC---------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence 4677777777763 44322 1356677777777775555567778888888888888875555566
Q ss_pred cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccCh
Q 040280 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVIS 237 (271)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~ 237 (271)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 778888888888888876656666777888888888888775444456777788888888887775443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1.1e-16 Score=122.99 Aligned_cols=135 Identities=21% Similarity=0.150 Sum_probs=104.7
Q ss_pred CCCCCcEEECCCCCCc-ccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCc
Q 040280 85 SFPHLMHFNLSFNLFF-GIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGS 163 (271)
Q Consensus 85 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (271)
..++|++|++++|.+. +.+|..+..++ +|++|++++|.+.+. ..+..+++|++|++++|.+.+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~-------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFV-------------NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGG-------------GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCC-------------CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH
Confidence 3467888888888887 55666665554 455777777777754 6778888999999999998866
Q ss_pred cCccccCCCCCCEEEccCCcCCCcc-chhccCCCCCCEEEeecCcCCCCCc---ccccCCCCCCEEEcccCcCCc
Q 040280 164 IPSIIGNFKSLLRLDLSENQLNGSI-PLSFGNLNNLTMMSLFSDSLSGSIP---PNLGNLKSLSTLRLHINQLNG 234 (271)
Q Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~n~i~~ 234 (271)
+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7777777889999999999888532 2678888999999999998885544 367888999999999998763
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=4.2e-16 Score=122.65 Aligned_cols=139 Identities=24% Similarity=0.312 Sum_probs=111.4
Q ss_pred CCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCC
Q 040280 43 HSKPKISPCAWVGISCNQVGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLEN 122 (271)
Q Consensus 43 ~~~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 122 (271)
..||..|.|.+.. ++++++++. .+|. .+ .++|++|++++|.+. .+|..|..+++
T Consensus 2 ~~CP~~C~C~~~~-----------l~~~~~~l~-~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~---------- 55 (193)
T 2wfh_A 2 SRCPTECTCLDTV-----------VRCSNKGLK-VLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKH---------- 55 (193)
T ss_dssp --CCTTCEEETTE-----------EECTTSCCS-SCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTT----------
T ss_pred CCCCCCCEeCCCE-----------EEcCCCCCC-cCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccC----------
Confidence 4588888887644 455556665 5665 33 258999999999997 56777766654
Q ss_pred CCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 123 LKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 123 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+.|+
T Consensus 56 ---L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 56 ---LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp ---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ---CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 55788888888877777899999999999999999977777899999999999999999966666788899999999
Q ss_pred eecCcCCC
Q 040280 203 LFSDSLSG 210 (271)
Q Consensus 203 l~~n~l~~ 210 (271)
+++|.+..
T Consensus 133 L~~N~~~C 140 (193)
T 2wfh_A 133 IGANPLYC 140 (193)
T ss_dssp CCSSCEEC
T ss_pred eCCCCeec
Confidence 99998764
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=8.8e-17 Score=132.69 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=126.5
Q ss_pred CCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccC
Q 040280 86 FPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIP 165 (271)
Q Consensus 86 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 165 (271)
+.++..++++++.+.+.. .+..++ +|++|++++|.+. .++ .+..+++|++|++++|.+++ ++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~-------------~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~ 79 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELS-------------GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LS 79 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHT-------------TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CG
T ss_pred HHHHHHHHhcCCCccccc--chhhcC-------------cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Ch
Confidence 445677788888887533 455554 4557778888777 344 68889999999999999985 44
Q ss_pred ccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCC
Q 040280 166 SIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSS 245 (271)
Q Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 245 (271)
. +..+++|++|++++|++++ +|.. .. ++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++. + .+..+++
T Consensus 80 ~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~ 151 (263)
T 1xeu_A 80 P-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSK 151 (263)
T ss_dssp G-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTT
T ss_pred h-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCC
Confidence 4 8999999999999999985 4443 23 899999999999985 44 488999999999999999865 3 6889999
Q ss_pred CCEEeCccCcccccCccccccCCCCC
Q 040280 246 LRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 246 L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
|+.|++++|++++. ..+..++.|+
T Consensus 152 L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 152 LEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp CCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred CCEEECCCCcCcch--HHhccCCCCC
Confidence 99999999999865 6677777663
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.7e-16 Score=119.51 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=108.6
Q ss_pred CCCCCEEEcccCcCC-CccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEE
Q 040280 147 LSSLDLLYLYSNSFS-GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTL 225 (271)
Q Consensus 147 l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 225 (271)
.++|++|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999998 78888889999999999999999855 778899999999999999997788888889999999
Q ss_pred EcccCcCCcc-ChhhhcCCCCCCEEeCccCcccccCc---cccccCCCCC
Q 040280 226 RLHINQLNGV-ISPSIANLSSLRTLFLYNNGLYGFVP---EEIGCCLFPN 271 (271)
Q Consensus 226 ~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~l~ 271 (271)
++++|.+++. .+..+..+++|++|++++|++++..+ ..++.++.|+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 9999999874 34788999999999999999996554 4788887764
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=8.7e-16 Score=131.84 Aligned_cols=190 Identities=21% Similarity=0.191 Sum_probs=147.1
Q ss_pred CCCCEEEEEcCCCCCccccChhhhCCCCCCcE-EECCCCCCcccCchhhccCCCCCEEecCCCCC-----------CCCc
Q 040280 60 QVGRVISIDLSSMGLNGALQKFAFSSFPHLMH-FNLSFNLFFGIIPPQVGNLSELLHLDLVLENL-----------KYLS 127 (271)
Q Consensus 60 ~~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l-----------~~L~ 127 (271)
...+++.|+|++|.+.+.++...|.+++++++ +.+.+|++....|..|..+++|++|+++.+.+ .++.
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhh
Confidence 45689999999999988888878999998876 56667899988899999999999999976433 3566
Q ss_pred EEEccC-CcCCCccccccCCCC-CCCEEEcccCcCCCccCccccCCCCCCEEEccC-CcCCCccchhccCCCCCCEEEee
Q 040280 128 TLDLSQ-NQLSGSISFSLGKLS-SLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSE-NQLNGSIPLSFGNLNNLTMMSLF 204 (271)
Q Consensus 128 ~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~ 204 (271)
.+++.+ +.+....+..|..+. .+++|++++|.++ .++.......+|+++++.+ |.++...+..|..+++|+.|+++
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred hhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 777765 566644445677764 6999999999998 5666666677899999975 66764445678899999999999
Q ss_pred cCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccC
Q 040280 205 SDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNN 254 (271)
Q Consensus 205 ~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 254 (271)
+|.++. +|.. .+.+|+.|.+.++.--..+| .+..+++|+.+++.++
T Consensus 211 ~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 211 RTRIHS-LPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCCcCc-cChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 999984 5532 24567777776665444566 4788999999999765
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=8.2e-17 Score=150.64 Aligned_cols=166 Identities=23% Similarity=0.173 Sum_probs=109.3
Q ss_pred CCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCc
Q 040280 87 PHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPS 166 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 166 (271)
+.++.|+|.+|.+.. .+..+ |+.++|+.+. +..++++.|.+. ..+..+..++.|++|+|++|.+. .+|.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~---i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYS---IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA 241 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCS-CCCG
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCccc---ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh
Confidence 567888888887775 33333 2222232222 333455556655 56778999999999999999998 7888
Q ss_pred cccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCC
Q 040280 167 IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSL 246 (271)
Q Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 246 (271)
.+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..++.+++|++|+|++|.+. .+|..|+.+++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc
Confidence 8889999999999999999 88999999999999999999999 78999999999999999999997 778889999999
Q ss_pred CEEeCccCcccccCcccccc
Q 040280 247 RTLFLYNNGLYGFVPEEIGC 266 (271)
Q Consensus 247 ~~L~l~~n~l~~~~p~~~~~ 266 (271)
+.|+|++|++++.+|..+..
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHH
T ss_pred cEEeCCCCccCCCChHHHhh
Confidence 99999999999988887754
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=1.1e-15 Score=118.45 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=67.6
Q ss_pred hCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCC
Q 040280 83 FSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSG 162 (271)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 162 (271)
+.++.+|++|++++|.+.. ++. +..+. ++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~------------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATL------------DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGT------------TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcC------------CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc
Confidence 4556666666666666653 232 22211 2344555555555532 455556666666666666653
Q ss_pred ccCccccCCCCCCEEEccCCcCCCccch--hccCCCCCCEEEeecCcCCCCCccc----ccCCCCCCEEEcccCcC
Q 040280 163 SIPSIIGNFKSLLRLDLSENQLNGSIPL--SFGNLNNLTMMSLFSDSLSGSIPPN----LGNLKSLSTLRLHINQL 232 (271)
Q Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~i 232 (271)
..+..+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|..
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 22233355556666666666554 3333 4445555555555555554 23332 44455555555555543
No 127
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=7.6e-17 Score=147.43 Aligned_cols=197 Identities=16% Similarity=0.076 Sum_probs=122.8
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecC-----------C-----------
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLV-----------L----------- 120 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----------~----------- 120 (271)
+++.|++++|.+.+......+..+++|++|+++++-..+.++..+..+++|++|+++ .
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 566666666665433322134566666666666322122233333456667777666 1
Q ss_pred -CCCCCCcEEEccCCcCCCccccccCC-CCCCCEEEcc----cCcCCCc-----cCccccCCCCCCEEEccCCc--CCCc
Q 040280 121 -ENLKYLSTLDLSQNQLSGSISFSLGK-LSSLDLLYLY----SNSFSGS-----IPSIIGNFKSLLRLDLSENQ--LNGS 187 (271)
Q Consensus 121 -~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--~~~~ 187 (271)
..+++|++|+++.+.+++.....+.. +++|++|+++ .|.+++. ++..+..+++|+.|+++.|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 12456777777666666555545544 6777777775 4445432 22235567788888886433 4443
Q ss_pred cchhcc-CCCCCCEEEeecCcCCC-CCcccccCCCCCCEEEcccCcCCcc-ChhhhcCCCCCCEEeCccCccccc
Q 040280 188 IPLSFG-NLNNLTMMSLFSDSLSG-SIPPNLGNLKSLSTLRLHINQLNGV-ISPSIANLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 188 ~p~~~~-~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 259 (271)
.+..+. .+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 333333 47889999998888765 2344557788899999999998754 344456788999999999998765
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=1.2e-17 Score=132.08 Aligned_cols=156 Identities=24% Similarity=0.265 Sum_probs=112.3
Q ss_pred hCCCCCCcEEECCCCCCcccCch------hhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcc
Q 040280 83 FSSFPHLMHFNLSFNLFFGIIPP------QVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLY 156 (271)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 156 (271)
+.....++.++++.+.+.+..|. .+..++ +|++|++++|.+.+ +| .+..+++|++|+++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-------------~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-------------ACKHLALSTNNIEK-IS-SLSGMENLRILSLG 78 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-------------TCSEEECSEEEESC-CC-CHHHHTTCCEEEEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCC-------------CCCEEECCCCCCcc-cc-ccccCCCCCEEECC
Confidence 34445566666666666655443 555544 45567777777764 45 77778888888888
Q ss_pred cCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCc-ccccCCCCCCEEEcccCcCCcc
Q 040280 157 SNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIP-PNLGNLKSLSTLRLHINQLNGV 235 (271)
Q Consensus 157 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~i~~~ 235 (271)
+|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 79 ~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 79 RNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 88887 677777777888899999888884 55 57778889999999988874322 3577888899999999988765
Q ss_pred Chh----------hhcCCCCCCEEeCccCcccc
Q 040280 236 ISP----------SIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 236 ~~~----------~~~~l~~L~~L~l~~n~l~~ 258 (271)
+|. .+..+++|+.|+ +|.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 443 367888999887 666653
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=6.4e-15 Score=125.35 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=83.2
Q ss_pred CCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCC-EEEcccCcCCccChhhhcCCCCCCEE
Q 040280 171 FKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLS-TLRLHINQLNGVISPSIANLSSLRTL 249 (271)
Q Consensus 171 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~l~~n~i~~~~~~~~~~l~~L~~L 249 (271)
+++|+.+++++|.++...+..|.++++|+.+++.+| +....+..|.++.+|+ .+++.+ .++...+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999998888666778889999999999988 6645556788999999 999988 7776777889999999999
Q ss_pred eCccCcccccCccccccCCCCC
Q 040280 250 FLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 250 ~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
++++|.++..-+..|.+|+.|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCC
T ss_pred EeCCCccCccchhhhcCCcchh
Confidence 9999999866667899988875
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1.7e-17 Score=131.05 Aligned_cols=141 Identities=20% Similarity=0.234 Sum_probs=115.3
Q ss_pred CcEEEccCCcCCCcccc------ccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCC
Q 040280 126 LSTLDLSQNQLSGSISF------SLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLT 199 (271)
Q Consensus 126 L~~L~l~~n~~~~~~~~------~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 199 (271)
++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 34444555555554444 88999999999999999984 66 8899999999999999998 6787777789999
Q ss_pred EEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccCh-hhhcCCCCCCEEeCccCcccccCccc----------cccCC
Q 040280 200 MMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVIS-PSIANLSSLRTLFLYNNGLYGFVPEE----------IGCCL 268 (271)
Q Consensus 200 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~----------~~~l~ 268 (271)
.|++++|.+++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++++.+|.. +..++
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 99999999985 55 57788999999999999986433 57889999999999999998776653 66666
Q ss_pred CCC
Q 040280 269 FPN 271 (271)
Q Consensus 269 ~l~ 271 (271)
.|+
T Consensus 175 ~L~ 177 (198)
T 1ds9_A 175 NLK 177 (198)
T ss_dssp SCS
T ss_pred CcE
Confidence 653
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1e-14 Score=112.93 Aligned_cols=129 Identities=22% Similarity=0.167 Sum_probs=98.0
Q ss_pred CCCCcEEEccCCcCCCccccccCCCC-CCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEE
Q 040280 123 LKYLSTLDLSQNQLSGSISFSLGKLS-SLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMM 201 (271)
Q Consensus 123 l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 201 (271)
+++|++|++++|.++. ++. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4566778888888873 343 44444 88999999988874 3 578888889999999998885444555788889999
Q ss_pred EeecCcCCCCCcc--cccCCCCCCEEEcccCcCCccChh----hhcCCCCCCEEeCccCccc
Q 040280 202 SLFSDSLSGSIPP--NLGNLKSLSTLRLHINQLNGVISP----SIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 202 ~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~ 257 (271)
++++|.+. .+|. .+..+++|+.|++++|.+.. +|. .+..+++|+.|++++|...
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99998886 4555 67788889999999998874 344 3778888999998888764
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=3.3e-14 Score=109.42 Aligned_cols=107 Identities=31% Similarity=0.404 Sum_probs=82.9
Q ss_pred CcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeec
Q 040280 126 LSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFS 205 (271)
Q Consensus 126 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 205 (271)
.+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467888888887 4565553 7788888888888866677788888888888888888866666677888888888888
Q ss_pred CcCCCCCcccccCCCCCCEEEcccCcCCcc
Q 040280 206 DSLSGSIPPNLGNLKSLSTLRLHINQLNGV 235 (271)
Q Consensus 206 n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~ 235 (271)
|.+++..+..+..+++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888865555677888888888888887644
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=1.7e-15 Score=138.56 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=16.5
Q ss_pred CCCCCEEEcccCcCCccChhhhcC-CCCCCEEeCc
Q 040280 219 LKSLSTLRLHINQLNGVISPSIAN-LSSLRTLFLY 252 (271)
Q Consensus 219 l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~ 252 (271)
+++|++|+++.|.+++..+..+.. +++|+.|+++
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 445555555545554443333333 5555555553
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=3.7e-14 Score=129.08 Aligned_cols=171 Identities=18% Similarity=0.196 Sum_probs=134.1
Q ss_pred CEEEEEcCCCC-------------CccccChhhhCCCCCCcEEE-CCCCCCcccCch------hhccCCCCCEEecCCCC
Q 040280 63 RVISIDLSSMG-------------LNGALQKFAFSSFPHLMHFN-LSFNLFFGIIPP------QVGNLSELLHLDLVLEN 122 (271)
Q Consensus 63 ~l~~L~L~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~------~~~~l~~L~~L~l~~~~ 122 (271)
+++.|+++++. ..+..|. .++.+++|+.|+ ++.|.+.. ++. .+..++
T Consensus 373 ~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~----------- 439 (567)
T 1dce_A 373 ELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKME----------- 439 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHH-----------
T ss_pred HHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhcccch-hhhhhhhcccccccC-----------
Confidence 46677776553 4455555 788888899888 56554331 111 111111
Q ss_pred CCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEE
Q 040280 123 LKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMS 202 (271)
Q Consensus 123 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 202 (271)
...|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus 440 ~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 440 YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 1247789999999985 565 999999999999999999 889999999999999999999995 67 789999999999
Q ss_pred eecCcCCCCC-cccccCCCCCCEEEcccCcCCccChh---hhcCCCCCCEEeC
Q 040280 203 LFSDSLSGSI-PPNLGNLKSLSTLRLHINQLNGVISP---SIANLSSLRTLFL 251 (271)
Q Consensus 203 l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l 251 (271)
+++|.+++.. |..+..+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999776 88999999999999999999876543 2445899999864
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=6.2e-14 Score=108.35 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=85.2
Q ss_pred cEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecC
Q 040280 127 STLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSD 206 (271)
Q Consensus 127 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 206 (271)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57888888886 5666554 78899999999988777788888889999999999888655566778888999999998
Q ss_pred cCCCCCcccccCCCCCCEEEcccCcCCcc
Q 040280 207 SLSGSIPPNLGNLKSLSTLRLHINQLNGV 235 (271)
Q Consensus 207 ~l~~~~p~~~~~l~~L~~L~l~~n~i~~~ 235 (271)
.+++..+..+..+++|++|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88865555588888899999998888743
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=2.8e-14 Score=121.34 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=138.9
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------------CCCCC
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------------ENLKY 125 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------~~l~~ 125 (271)
..+++.|+|.+ +++ .++..+|..+++|+.|++.+|.+..+.+.+|..+.++..+.... ..+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 45788888888 666 56666899999999999999888877778888877777666533 11222
Q ss_pred Cc-EEEcc-------------------------CCcCCCcccccc-CCCCCCCEEEcccCcCCCccCccccCCCCCCEEE
Q 040280 126 LS-TLDLS-------------------------QNQLSGSISFSL-GKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLD 178 (271)
Q Consensus 126 L~-~L~l~-------------------------~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 178 (271)
|+ .+.+. ++-.. .....+ ..+++|+++++++|.++......|..+++|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 32 12221 11000 000001 1278999999999999856666899999999999
Q ss_pred ccCCcCCCccchhccCCCCCC-EEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeC
Q 040280 179 LSENQLNGSIPLSFGNLNNLT-MMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFL 251 (271)
Q Consensus 179 l~~n~~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 251 (271)
+.+| ++...+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++.+|.+....+.+|.++++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9998 7656678899999999 999988 666555678999999999999999999888889999999999874
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=1.2e-13 Score=106.28 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=89.2
Q ss_pred CcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccc
Q 040280 89 LMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSII 168 (271)
Q Consensus 89 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 168 (271)
.+++++++|.+.. +|..+. +.|++|++++|.+++..+..|.++++|++|++++|.+++..+..|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~---------------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP---------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEeCCCCcCc-cCccCC---------------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc
Confidence 5789999998874 565432 467788899999997778889999999999999999986666677
Q ss_pred cCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCC
Q 040280 169 GNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGS 211 (271)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 211 (271)
..+++|++|++++|++++..+..|..+++|+.|++++|.+...
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8999999999999999976666788899999999999988754
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=6.1e-16 Score=141.42 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=141.7
Q ss_pred CCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCccc-CchhhccCCCCCEEecCC--------------------
Q 040280 62 GRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGI-IPPQVGNLSELLHLDLVL-------------------- 120 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-------------------- 120 (271)
.+++.|+++++.+.+......+..+++|++|++++| +... ++.....+++|++|++..
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 478999999998765433324678899999999988 4422 222333588999998821
Q ss_pred -CCCCCCcEEEccCCcCCCccccccC-CCCCCCEEEcc--c----CcCCCc-----cCccccCCCCCCEEEccCCcCCCc
Q 040280 121 -ENLKYLSTLDLSQNQLSGSISFSLG-KLSSLDLLYLY--S----NSFSGS-----IPSIIGNFKSLLRLDLSENQLNGS 187 (271)
Q Consensus 121 -~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~ 187 (271)
..+++|++|.+..+.+++.....+. .+++|++|+++ + +.++.. ++..+..+++|+.|++++ .++..
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2378899998888888865555554 57899999999 3 344411 112256778999999977 66654
Q ss_pred cchhccC-CCCCCEEEeecCcCCCCCcccc-cCCCCCCEEEcccCcCCccChh-hhcCCCCCCEEeCccCcccccCcc
Q 040280 188 IPLSFGN-LNNLTMMSLFSDSLSGSIPPNL-GNLKSLSTLRLHINQLNGVISP-SIANLSSLRTLFLYNNGLYGFVPE 262 (271)
Q Consensus 188 ~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~ 262 (271)
.+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++.....
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 524 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK 524 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH
Confidence 4455544 8899999999999865444434 5688999999999998655443 345588999999999988644333
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=2.4e-13 Score=104.98 Aligned_cols=106 Identities=23% Similarity=0.288 Sum_probs=88.9
Q ss_pred cEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCcccc
Q 040280 90 MHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIG 169 (271)
Q Consensus 90 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 169 (271)
+.+++++|.+. .+|..+. +.|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---------------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cEEEeCCCCCC-ccCCCcC---------------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence 78999999886 4665442 4677899999999977788899999999999999999865555678
Q ss_pred CCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCC
Q 040280 170 NFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGS 211 (271)
Q Consensus 170 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 211 (271)
.+++|++|++++|.+++..+..|..+++|+.|++++|.+...
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999999999999999966666688999999999999988743
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=3.8e-12 Score=111.05 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=139.2
Q ss_pred CEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecC----------CCCCCCCcEEEcc
Q 040280 63 RVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLV----------LENLKYLSTLDLS 132 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~----------~~~l~~L~~L~l~ 132 (271)
.++.+.+.. ++. .+....|..+++|+.+++.+|.+..+...+|. +.+|+.+.+. +..+++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTTCCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCchheehhhHhhCCCCCCEEecC
Confidence 466666664 443 45555788888888888888888765555665 5778888773 3567788888887
Q ss_pred CCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCC-----CccchhccCCCCCCEEEeecCc
Q 040280 133 QNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLN-----GSIPLSFGNLNNLTMMSLFSDS 207 (271)
Q Consensus 133 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L~l~~n~ 207 (271)
.+ +...-..+|.+ .+|+.+.+.+ .++.....+|.++++|+.+.+.++... ...+..|..+++|+.+.+.+ .
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence 64 44344455666 7888888844 454344568888889999998887654 34567788888999998884 4
Q ss_pred CCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCC
Q 040280 208 LSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCL 268 (271)
Q Consensus 208 l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 268 (271)
++..-...|.++.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.+....+..|.+++
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 65444566888889999998655 555666778888 899999999877754455666553
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=5.4e-14 Score=128.48 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=96.2
Q ss_pred CCCCCCcEEECCCCCCcccCchhhc-cCCCCCEEecCCC-------------CCCCCcEEEccCCcCCCccccc----cC
Q 040280 84 SSFPHLMHFNLSFNLFFGIIPPQVG-NLSELLHLDLVLE-------------NLKYLSTLDLSQNQLSGSISFS----LG 145 (271)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~~-------------~l~~L~~L~l~~n~~~~~~~~~----l~ 145 (271)
..+++|++|++++|.+.+..+..+. .+++|++|+++.+ .+++|++|++++|.+++..+.. ..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4567788888888777766565665 5778888877542 5677888888887766443332 23
Q ss_pred CCCCCCEEEcccCc--CCC-ccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCc---------------
Q 040280 146 KLSSLDLLYLYSNS--FSG-SIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDS--------------- 207 (271)
Q Consensus 146 ~l~~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~--------------- 207 (271)
.+++|++|++++|. +.. .+...+..+++|+.|++++|...+.++..+..+++|+.|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 56678888887775 221 111122345777777777762211244444455555555543321
Q ss_pred -----------CC----CCCcccccCCCCCCEEEcccCcCCccC-hhhhcCCCCCCEEeCccC
Q 040280 208 -----------LS----GSIPPNLGNLKSLSTLRLHINQLNGVI-SPSIANLSSLRTLFLYNN 254 (271)
Q Consensus 208 -----------l~----~~~p~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n 254 (271)
+. ..++..+..+++|++|++++|.+.+.. ...+..+++|+.|++++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 00 012222224456666666666655322 222445566666666655
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=9.5e-15 Score=126.31 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=97.1
Q ss_pred CEEEEEcCCCCCccccChh---hhC-CCCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCC
Q 040280 63 RVISIDLSSMGLNGALQKF---AFS-SFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSG 138 (271)
Q Consensus 63 ~l~~L~L~~~~~~~~~~~~---~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~ 138 (271)
.++.|+|++|.+...-... .+. ..++|++|+|++|.+.......+.. .+++|++|++++|.+++
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~------------~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP------------VFLRARKLGLQLNSLGP 140 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH------------HHHTEEEEECCSSCCCH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH------------HHHhccHhhcCCCCCCH
Confidence 4566666666654321110 111 2245666666666554322222211 11245677777777764
Q ss_pred cccccc-----CCCCCCCEEEcccCcCCC----ccCccccCCCCCCEEEccCCcCCCc----cchhccCCCCCCEEEeec
Q 040280 139 SISFSL-----GKLSSLDLLYLYSNSFSG----SIPSIIGNFKSLLRLDLSENQLNGS----IPLSFGNLNNLTMMSLFS 205 (271)
Q Consensus 139 ~~~~~l-----~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~ 205 (271)
.....+ ...++|++|++++|.++. .++..+...++|++|++++|.++.. ++..+...++|+.|++++
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 333332 345677777777777652 2334445667777777777776532 244555666777777777
Q ss_pred CcCCCC----CcccccCCCCCCEEEcccCcCCccChhhhcCC---C--CCCEEe--CccCccc
Q 040280 206 DSLSGS----IPPNLGNLKSLSTLRLHINQLNGVISPSIANL---S--SLRTLF--LYNNGLY 257 (271)
Q Consensus 206 n~l~~~----~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~--~L~~L~--l~~n~l~ 257 (271)
|.++.. ++..+...++|++|++++|.+.+.....+..+ . .++.+. +.+|.+.
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 777542 22334455677777777777765544444332 1 155555 5555544
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=2.8e-12 Score=109.60 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=90.3
Q ss_pred CCCCC-CCcccceeeCCCCCEEEEEcCCC-CCccccChhhhCCCCCCcEEECCC-CCCcccCchhhccCCCCCEEecCCC
Q 040280 45 KPKIS-PCAWVGISCNQVGRVISIDLSSM-GLNGALQKFAFSSFPHLMHFNLSF-NLFFGIIPPQVGNLSELLHLDLVLE 121 (271)
Q Consensus 45 ~~~~~-~c~~~~v~~~~~~~l~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~~ 121 (271)
||..| .|.|..+.|.. + ++. .+|. +..+++|++|+|++ |.+.+..+..|.++++
T Consensus 1 cp~~c~~C~~~~v~~~~-----------~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~--------- 57 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTR-----------DGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGE--------- 57 (347)
T ss_dssp CCSSSCCSSSSCEECCS-----------SCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCC---------
T ss_pred CCCcCccccCCEEEcCC-----------CCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccC---------
Confidence 78888 89887776653 3 455 4776 88889999999996 9999877777876654
Q ss_pred CCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCC
Q 040280 122 NLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLN 185 (271)
Q Consensus 122 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (271)
|++|++++|.+++..+..|.++++|++|+|++|.+++..+..+..+. |+.|++.+|.+.
T Consensus 58 ----L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 58 ----LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ----CSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ----CCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55788888998887788899999999999999999855555555555 999999999886
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.2e-14 Score=125.64 Aligned_cols=173 Identities=19% Similarity=0.157 Sum_probs=125.7
Q ss_pred CCCCcEEECCCCCCcccCchhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCcccccc-CCCCCCCEEEcccCcCCCcc
Q 040280 86 FPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSL-GKLSSLDLLYLYSNSFSGSI 164 (271)
Q Consensus 86 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~ 164 (271)
++.|+.|++++|.++......+...-. ...++|++|++++|.++......+ ..+++|++|++++|.++...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~--------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLG--------SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHS--------SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHh--------hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence 468999999999998655544443200 122467789999998875433333 24568999999999997443
Q ss_pred Cccc-----cCCCCCCEEEccCCcCCCc----cchhccCCCCCCEEEeecCcCCCC----CcccccCCCCCCEEEcccCc
Q 040280 165 PSII-----GNFKSLLRLDLSENQLNGS----IPLSFGNLNNLTMMSLFSDSLSGS----IPPNLGNLKSLSTLRLHINQ 231 (271)
Q Consensus 165 ~~~l-----~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~ 231 (271)
...+ ...++|++|++++|.++.. ++..+...++|++|++++|.+... ++..+...++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 3333 3467899999999998742 445557789999999999998743 24556777899999999999
Q ss_pred CCcc----ChhhhcCCCCCCEEeCccCcccccCcccccc
Q 040280 232 LNGV----ISPSIANLSSLRTLFLYNNGLYGFVPEEIGC 266 (271)
Q Consensus 232 i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 266 (271)
+++. ++..+...++|++|+|++|.++......+..
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 9864 3445667799999999999998655544443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=3.6e-12 Score=108.92 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=88.5
Q ss_pred EEEccCC-cCCCccccccCCCCCCCEEEccc-CcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeec
Q 040280 128 TLDLSQN-QLSGSISFSLGKLSSLDLLYLYS-NSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFS 205 (271)
Q Consensus 128 ~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 205 (271)
.++.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|++++|++++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 5688887 787 5777 99999999999996 999866667899999999999999999988888899999999999999
Q ss_pred CcCCCCCcccccCCCCCCEEEcccCcCCc
Q 040280 206 DSLSGSIPPNLGNLKSLSTLRLHINQLNG 234 (271)
Q Consensus 206 n~l~~~~p~~~~~l~~L~~L~l~~n~i~~ 234 (271)
|.+++..+..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999965555566555 9999999999873
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.31 E-value=7.2e-11 Score=102.96 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=150.9
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC----------CCCCCCcEEE
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL----------ENLKYLSTLD 130 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------~~l~~L~~L~ 130 (271)
+.+++.+++.++++. .++...|. ..+|+.+.+.. .+..+...+|.++++|+.+.+.. .. .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEE
Confidence 458999999999887 56665777 58999999985 47777788999999999999953 23 6789999
Q ss_pred ccCCcCCCccccccCCCCCCCEEEcccCcCC-----CccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeec
Q 040280 131 LSQNQLSGSISFSLGKLSSLDLLYLYSNSFS-----GSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFS 205 (271)
Q Consensus 131 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 205 (271)
+. +.+......+|.++++|+.+.+.++.+. ......|..+++|+.+.+.. .++......|.++++|+.+.+..
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 84 5566455678999999999999988764 34556889999999999984 46656678888999999999966
Q ss_pred CcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCC-CCCEEeCccCccc
Q 040280 206 DSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS-SLRTLFLYNNGLY 257 (271)
Q Consensus 206 n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~ 257 (271)
+ ++..-...|.++ +|+.+++.+|.+....+..|..++ +++.+++..+.+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5 554445678888 999999999988766667777774 7888988877543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=3.4e-11 Score=103.48 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCEEEEEcCCCCCcc-c-------cChhhhCCCCCCcEEECCCCCCc---------ccCchhhccCCCCCEEecCCCCCC
Q 040280 62 GRVISIDLSSMGLNG-A-------LQKFAFSSFPHLMHFNLSFNLFF---------GIIPPQVGNLSELLHLDLVLENLK 124 (271)
Q Consensus 62 ~~l~~L~L~~~~~~~-~-------~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~~~l~ 124 (271)
.+|+.|.+....+.+ . +.. +...+++|+.|.+...... +.+...+..+|+|+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~-s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~---------- 175 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVE-NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN---------- 175 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHT-THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCC----------
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHH-hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCc----------
Confidence 367778777655442 1 112 3456789999988654321 11333444555555
Q ss_pred CCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCcccc--CCCCCCEEEccC--CcCCCc-----cchhc--c
Q 040280 125 YLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIG--NFKSLLRLDLSE--NQLNGS-----IPLSF--G 193 (271)
Q Consensus 125 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~--n~~~~~-----~p~~~--~ 193 (271)
.|.++++.-. .++. + .+++|++|++..+.+.......+. .+++|+.|+++. +...+. +...+ .
T Consensus 176 ---~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 176 ---NLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp ---EEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred ---EEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 4555444211 1222 2 256677777766665432222232 466677766642 111100 01111 1
Q ss_pred CCCCCCEEEeecCcCCCCCcccc---cCCCCCCEEEcccCcCCccC----hhhhcCCCCCCEEeCccCcccc
Q 040280 194 NLNNLTMMSLFSDSLSGSIPPNL---GNLKSLSTLRLHINQLNGVI----SPSIANLSSLRTLFLYNNGLYG 258 (271)
Q Consensus 194 ~l~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~ 258 (271)
.+++|+.|++.+|.+....+..+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 35677777777766653222222 23566777777777666532 2223445677777777776653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.2e-09 Score=93.81 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=101.1
Q ss_pred CCCcEEECCCCCCcc-cC-------chhhccCCCCCEEecCCCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccC
Q 040280 87 PHLMHFNLSFNLFFG-II-------PPQVGNLSELLHLDLVLENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSN 158 (271)
Q Consensus 87 ~~L~~L~l~~n~l~~-~~-------~~~~~~l~~L~~L~l~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 158 (271)
..++.|.+..+...+ .. ..+...+++|+.|.+....... ..++... .+.+...+..+++|+.|++++|
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~---~~is~~~-~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEE---QEISWIE-QVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTT---CCGGGCB-CCBCHHHHHTCTTCCEEEEECC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhh---ccccccc-ccCHHHHHhcCCCCcEEEEeCC
Confidence 457788888665432 11 2234445666655543321111 0111111 1123445667899999999987
Q ss_pred cCCCccCccccCCCCCCEEEccCCcCCCccchhcc--CCCCCCEEEeec--CcCCCC-----Ccccc--cCCCCCCEEEc
Q 040280 159 SFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFG--NLNNLTMMSLFS--DSLSGS-----IPPNL--GNLKSLSTLRL 227 (271)
Q Consensus 159 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~l 227 (271)
.-. .++. +. +++|+.|++..+.+.......+. .+++|+.|+++. +...+. +...+ ..+++|+.|++
T Consensus 183 ~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 183 NNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp BTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred CCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 422 2333 33 78999999998887643333343 689999999863 221111 11122 35789999999
Q ss_pred ccCcCCccChhhhc---CCCCCCEEeCccCccccc
Q 040280 228 HINQLNGVISPSIA---NLSSLRTLFLYNNGLYGF 259 (271)
Q Consensus 228 ~~n~i~~~~~~~~~---~l~~L~~L~l~~n~l~~~ 259 (271)
++|.+.+..+..+. .+++|++|+|+.|.+.+.
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 99998765444443 468999999999999864
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=2e-07 Score=80.94 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=66.3
Q ss_pred cccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCC
Q 040280 167 IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSL 246 (271)
Q Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 246 (271)
.|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++..-...|.++.+|+.+++..+ ++.....+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4556667777777554 44344566777888888887644 44333456778888888888766 555556678888888
Q ss_pred CEEeCccCcccccCccccccCCCCC
Q 040280 247 RTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 247 ~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
+.+++..+ +. .+...|.+|+.|+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCc
Confidence 88888665 22 3456677776653
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=2.5e-09 Score=83.12 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred ccCCCCCCCEEEcccC-cCCC----ccCccccCCCCCCEEEccCCcCCCc----cchhccCCCCCCEEEeecCcCCCC--
Q 040280 143 SLGKLSSLDLLYLYSN-SFSG----SIPSIIGNFKSLLRLDLSENQLNGS----IPLSFGNLNNLTMMSLFSDSLSGS-- 211 (271)
Q Consensus 143 ~l~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~-- 211 (271)
.+...++|++|++++| .+.. .+...+...++|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555666666665 5442 1223444455666666666666532 233344456677777777776542
Q ss_pred --CcccccCCCCCCEEEc--ccCcCCcc----ChhhhcCCCCCCEEeCccCccc
Q 040280 212 --IPPNLGNLKSLSTLRL--HINQLNGV----ISPSIANLSSLRTLFLYNNGLY 257 (271)
Q Consensus 212 --~p~~~~~l~~L~~L~l--~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~ 257 (271)
+...+...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344566677888888 77887754 3345556678888888888775
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.67 E-value=2.7e-07 Score=80.04 Aligned_cols=200 Identities=13% Similarity=0.054 Sum_probs=146.4
Q ss_pred CCCEEEEEcCCCCCccccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCCEEecCC---------CCCCCCcEEEc
Q 040280 61 VGRVISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELLHLDLVL---------ENLKYLSTLDL 131 (271)
Q Consensus 61 ~~~l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~l~~L~~L~l 131 (271)
...++.+.+.++- ..++...|..+.+|+.+++..+ +..+...+|.++..|+.+.+.. .....|+.+.+
T Consensus 161 c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 161 CESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIII 237 (394)
T ss_dssp CTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEE
T ss_pred cCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEE
Confidence 3578888887653 2466668999999999999865 5555667888888888887743 23457788777
Q ss_pred cCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCC
Q 040280 132 SQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGS 211 (271)
Q Consensus 132 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 211 (271)
... +.......+.++..++.+.+..+... .....|.....++.+......+ ....|..+.+|+.+.+..+ ++..
T Consensus 238 p~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 238 PDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred CCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-ccee
Confidence 543 33234456788899999999877544 4556788888888888766543 2456778899999998765 4433
Q ss_pred CcccccCCCCCCEEEcccCcCCccChhhhcCCCCCCEEeCccCcccccCccccccCCCCC
Q 040280 212 IPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSLRTLFLYNNGLYGFVPEEIGCCLFPN 271 (271)
Q Consensus 212 ~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ 271 (271)
-...|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-...|.+|+.|+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 4456888999999999754 66556678999999999999877 6644456888888774
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=7.7e-07 Score=77.16 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=25.3
Q ss_pred EEEEEcCCCCCccccChhhhCCCCCCcEEECCCC---CCcccCchhhccCCCCCEE
Q 040280 64 VISIDLSSMGLNGALQKFAFSSFPHLMHFNLSFN---LFFGIIPPQVGNLSELLHL 116 (271)
Q Consensus 64 l~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L 116 (271)
++.+.+... ++ .+...+|.++.+|+.+.+..+ .+..+...+|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i 119 (394)
T 4gt6_A 66 LTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDI 119 (394)
T ss_dssp CCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBC
T ss_pred CEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceee
Confidence 555555432 22 444546777777777766543 2333333344444444433
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=1.2e-08 Score=79.16 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCCCEEEccCCcCCCc----cchhccCCCCCCEEEe--ecCcCCCC----CcccccCCCCCCEEEcccCcCC
Q 040280 171 FKSLLRLDLSENQLNGS----IPLSFGNLNNLTMMSL--FSDSLSGS----IPPNLGNLKSLSTLRLHINQLN 233 (271)
Q Consensus 171 l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~l~~n~i~ 233 (271)
.++|++|++++|.++.. +...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555554421 2333444455666666 55555432 2233444566777777777664
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=1.9e-06 Score=74.68 Aligned_cols=109 Identities=9% Similarity=0.118 Sum_probs=62.8
Q ss_pred cCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCC
Q 040280 144 LGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLS 223 (271)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 223 (271)
|.++..|+.+.+..+... .....|.+++.|+.+.+.. .++......|.++.+|+.+.+..+ ++..-...|.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 444455555555443322 2234455566666666642 333244456666777777777654 3323334577777777
Q ss_pred EEEcccCcCCccChhhhcCCCCCCEEeCccCcc
Q 040280 224 TLRLHINQLNGVISPSIANLSSLRTLFLYNNGL 256 (271)
Q Consensus 224 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 256 (271)
.+.+..+ ++.....+|.+|.+|+.+++.++..
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 7777544 4444456677777777777777643
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=4e-06 Score=72.10 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=46.6
Q ss_pred cccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCC
Q 040280 167 IIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSL 246 (271)
Q Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 246 (271)
.|..+.+|+.+.+..+ +.......|..+.+|+.+.+.++.++..-...|.++.+|+.+.+..+ ++.....+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 4444555555555432 22233345556666666666666555333445666666777766543 443444556666666
Q ss_pred CEEeCcc
Q 040280 247 RTLFLYN 253 (271)
Q Consensus 247 ~~L~l~~ 253 (271)
+.+.+..
T Consensus 336 ~~i~ip~ 342 (379)
T 4h09_A 336 STISYPK 342 (379)
T ss_dssp CCCCCCT
T ss_pred CEEEECC
Confidence 6666644
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=5.7e-07 Score=73.61 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=46.5
Q ss_pred CCCCCCEEEccCCcCCC--ccchhccCCCCCCEEEeecCcCCCCC-cccccCCCCCCEEEcccCcCCccCh-------hh
Q 040280 170 NFKSLLRLDLSENQLNG--SIPLSFGNLNNLTMMSLFSDSLSGSI-PPNLGNLKSLSTLRLHINQLNGVIS-------PS 239 (271)
Q Consensus 170 ~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~i~~~~~-------~~ 239 (271)
++++|+.|++++|.+++ .+|..+..+++|+.|++++|.+++.- -..+..+ +|++|++++|.+.+.+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 34556666666666654 23344455666666666666665431 0112233 77888888887776544 23
Q ss_pred hcCCCCCCEEe
Q 040280 240 IANLSSLRTLF 250 (271)
Q Consensus 240 ~~~l~~L~~L~ 250 (271)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677887775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=4.9e-07 Score=69.03 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=38.8
Q ss_pred CCCCEEEcccCcCCCccCccccCCCCCCEEEccCCc-CCCccchhccCC----CCCCEEEeecCc-CCCCCcccccCCCC
Q 040280 148 SSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLSENQ-LNGSIPLSFGNL----NNLTMMSLFSDS-LSGSIPPNLGNLKS 221 (271)
Q Consensus 148 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~ 221 (271)
.+|++|++++|.++..--..+..+++|+.|++++|. ++...-..+..+ ++|+.|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345666666665543333344555555555555553 332222223332 245555555543 33222222344555
Q ss_pred CCEEEcccC
Q 040280 222 LSTLRLHIN 230 (271)
Q Consensus 222 L~~L~l~~n 230 (271)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=7.5e-07 Score=72.90 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=60.0
Q ss_pred cCCCCCCEEEeecCcCCC--CCcccccCCCCCCEEEcccCcCCccChhhhcCCC--CCCEEeCccCcccccCcc------
Q 040280 193 GNLNNLTMMSLFSDSLSG--SIPPNLGNLKSLSTLRLHINQLNGVISPSIANLS--SLRTLFLYNNGLYGFVPE------ 262 (271)
Q Consensus 193 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~------ 262 (271)
.++++|+.|++++|.+++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++++.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 468899999999999987 3455667899999999999999865 3344444 999999999999987763
Q ss_pred -ccccCCCC
Q 040280 263 -EIGCCLFP 270 (271)
Q Consensus 263 -~~~~l~~l 270 (271)
.+..++.|
T Consensus 245 ~il~~~P~L 253 (267)
T 3rw6_A 245 AIRERFPKL 253 (267)
T ss_dssp HHHHHCTTC
T ss_pred HHHHHCccc
Confidence 35556555
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.7e-06 Score=66.04 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCCEEEccCCcCCCccchhccCCCCCCEEEeecCc-CCCCCcccccCC----CCCCEEEcccCc-CCccChhhhcCCCCC
Q 040280 173 SLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFSDS-LSGSIPPNLGNL----KSLSTLRLHINQ-LNGVISPSIANLSSL 246 (271)
Q Consensus 173 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~~L 246 (271)
.|+.|+++++.++...-..+..+++|+.|++++|. ++..--..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555443333334455555555555553 332111122222 235555555542 444333344445555
Q ss_pred CEEeCccC
Q 040280 247 RTLFLYNN 254 (271)
Q Consensus 247 ~~L~l~~n 254 (271)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555555
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.08 E-value=8.3e-05 Score=63.79 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=95.9
Q ss_pred hhccCCCCCEEecC----------CCCCCCCcEEEccCCcCCCccccccCCCCCCCEEEcccCcCCCccCccccCCCCCC
Q 040280 106 QVGNLSELLHLDLV----------LENLKYLSTLDLSQNQLSGSISFSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLL 175 (271)
Q Consensus 106 ~~~~l~~L~~L~l~----------~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 175 (271)
.+..+..|+.+.+. +..+..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ +.......|..+.+|+
T Consensus 212 ~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred ccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 34445555555552 245567777777654 44344557788889999988754 4424445788899999
Q ss_pred EEEccCCcCCCccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCCccChhhhcCCCCC
Q 040280 176 RLDLSENQLNGSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLNGVISPSIANLSSL 246 (271)
Q Consensus 176 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 246 (271)
.+.+.++.++......|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++.....+|.++..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 9999988887566788999999999999765 54334457889999999998655 554555667776443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=2.6e-05 Score=60.58 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=48.1
Q ss_pred cccCCCCCCEEEccCCcCCC----ccchhccCCCCCCEEEeecCcCCCC----CcccccCCCCCCEEEcccC---cCCc-
Q 040280 167 IIGNFKSLLRLDLSENQLNG----SIPLSFGNLNNLTMMSLFSDSLSGS----IPPNLGNLKSLSTLRLHIN---QLNG- 234 (271)
Q Consensus 167 ~l~~l~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n---~i~~- 234 (271)
.+..-+.|+.|++++|.+.. .+...+..-+.|+.|++++|.|... +...+...+.|++|+|++| .+..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 34444555555555555542 1223333445666666666666432 2233445566777777654 2332
Q ss_pred ---cChhhhcCCCCCCEEeCccCcc
Q 040280 235 ---VISPSIANLSSLRTLFLYNNGL 256 (271)
Q Consensus 235 ---~~~~~~~~l~~L~~L~l~~n~l 256 (271)
.+...+...+.|+.|+++.|.+
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2344555667777777776653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=5.7e-05 Score=58.65 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=29.5
Q ss_pred CCCCCEEEccCCcCCCc----cchhccCCCCCCEEEeecCc---CCC----CCcccccCCCCCCEEEcccCcC
Q 040280 171 FKSLLRLDLSENQLNGS----IPLSFGNLNNLTMMSLFSDS---LSG----SIPPNLGNLKSLSTLRLHINQL 232 (271)
Q Consensus 171 l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~---l~~----~~p~~~~~l~~L~~L~l~~n~i 232 (271)
-+.|++|++++|.++.. +-..+..-+.|+.|+++++. +.. .+...+...++|+.|+++.|.+
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34455555555555421 22233344456666665432 211 1223344556677777766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.23 E-value=0.00077 Score=48.69 Aligned_cols=56 Identities=27% Similarity=0.326 Sum_probs=39.0
Q ss_pred EEEccCCcCC-CccchhccCCCCCCEEEeecCcCCCCCcccccCCCCCCEEEcccCcCC
Q 040280 176 RLDLSENQLN-GSIPLSFGNLNNLTMMSLFSDSLSGSIPPNLGNLKSLSTLRLHINQLN 233 (271)
Q Consensus 176 ~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~i~ 233 (271)
.++-+++.++ ..+|..+ ..+|+.|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777765 2445432 246888888888888555556777888888888888775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0047 Score=44.45 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=33.9
Q ss_pred CCCCCCCcccceeeCCCCCEEEEEcCCCCCc-cccChhhhCCCCCCcEEECCCCCCcccCchhhccCCCCC
Q 040280 45 KPKISPCAWVGISCNQVGRVISIDLSSMGLN-GALQKFAFSSFPHLMHFNLSFNLFFGIIPPQVGNLSELL 114 (271)
Q Consensus 45 ~~~~~~c~~~~v~~~~~~~l~~L~L~~~~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 114 (271)
||..+.|.-. .++-++++++ ..+|. .+ -++|++|+|++|.|+.+.+..|..+++|+
T Consensus 2 CP~~C~C~~~-----------~v~Cs~~~L~~~~vP~-~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~ 58 (130)
T 3rfe_A 2 CPAPCSCAGT-----------LVDCGRRGLTWASLPT-AF--PVDTTELVLTGNNLTALPPGLLDALPALR 58 (130)
T ss_dssp CCTTCEEETT-----------EEECCSSCCCTTTSCS-CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCC
T ss_pred cCCCCEEcCC-----------EEEeCCCCCccccCCC-CC--CcCCCEEECCCCcCCccChhhhhhccccC
Confidence 6766777533 4555556664 24554 22 23688888888888866666666555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.17 E-value=27 Score=23.17 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=17.0
Q ss_pred cccCCCCCCCEEEcccCcCCCccCccccCCCCCCEEEcc
Q 040280 142 FSLGKLSSLDLLYLYSNSFSGSIPSIIGNFKSLLRLDLS 180 (271)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 180 (271)
.+|.++.+|+.+.+..+--. .-..+|..+.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEc
Confidence 34455555555555443211 222344455555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.03 E-value=21 Score=23.67 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=26.8
Q ss_pred CCCccCccccCCCCCCEEEccCCcCCCccchhccCCCCCCEEEeec
Q 040280 160 FSGSIPSIIGNFKSLLRLDLSENQLNGSIPLSFGNLNNLTMMSLFS 205 (271)
Q Consensus 160 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 205 (271)
++..-...|..+.+|+.+.+..+- +......|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 333334566677777777776543 224456666777777776654
Done!