Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>040281
MLPLKLIRSLVLGDTINNNHLLKQSQTSSQNNQLTSSEKTPFLLFLPTKELVTDTYRLAT
IARDMGMDLYPTPSLSHIIFSYPSPSSSSSSSSSTSPSWHSSMSLSSSLILPHDAVPLTF
PSLSTSSLSHLRSFVSLSKGLFKLVFVTGNSESKVDNSSSSHWDCCSFSLFSRLNGDRID
SMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSGRVRANGCRIRELRLPALDFKNAP
LRILQYVVLMTDDVFYLA

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040281
        (258 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956336 - symbol:AT5G08770 "AT5G08770" speci...   307  1.6e-32   2


>TAIR|locus:504956336 [details] [associations]
            symbol:AT5G08770 "AT5G08770" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 UniGene:At.45650 IPI:IPI00548591
            RefSeq:NP_680159.1 PRIDE:F4KCH4 EnsemblPlants:AT5G08770.1
            GeneID:830777 KEGG:ath:AT5G08770 OMA:LMTDDIF PhylomeDB:F4KCH4
            Uniprot:F4KCH4
        Length = 297

 Score = 307 (113.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 76/194 (39%), Positives = 92/194 (47%)

Query:    39 KTPFLLFLPTKELVTDTYRLATIARDMGMDLYPTPSLSHIIFX-----XXXXXXXXXXXX 93
             KTP L F+PT+EL++DTYRLATI RD+GMD+YPTPSLSHIIF                  
Sbjct:    61 KTPLLYFVPTRELISDTYRLATIGRDLGMDMYPTPSLSHIIFSFPSPESKSPSPFSSSSH 120

Query:    94 XXXXXXXXXXXXXXXLILPHDAXXXXXXXXXXXXXXXXXXXXXXXKGLFKLVF-VTGNXX 152
                              LP+DA                        GLFKLVF  T    
Sbjct:   121 PSTWSSSASLSSSLSWSLPNDAVMLSFPSLSASSLSHLRSFVSLSNGLFKLVFSATTVET 180

Query:   153 XXXXXXXXXXXXXXXXXLFSRLNGDRIDSMEAFSRALAGIGWTLFKTKKN------SNS- 205
                              LFS++   RI SME+FS ALA  GWT++KTK+N      +N  
Sbjct:   181 SPSSSGSVSNWDCCSVSLFSKIANKRIGSMESFSNALASKGWTIYKTKENPTPESTTNGV 240

Query:   206 RSVYLFRKVDSGRV 219
              SVYLFRKV +GR+
Sbjct:   241 SSVYLFRKVYTGRI 254

 Score = 303 (111.7 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 73/160 (45%), Positives = 89/160 (55%)

Query:   111 LPHDAXXXXXXXXXXXXXXXXXXXXXXXKGLFKLVF-VTGNXXXXXXXXXXXXXXXXXXX 169
             LP+DA                        GLFKLVF  T                     
Sbjct:   138 LPNDAVMLSFPSLSASSLSHLRSFVSLSNGLFKLVFSATTVETSPSSSGSVSNWDCCSVS 197

Query:   170 LFSRLNGDRIDSMEAFSRALAGIGWTLFKTKKN------SNS-RSVYLFRKVDSGRV--- 219
             LFS++   RI SME+FS ALA  GWT++KTK+N      +N   SVYLFRKV +GR+   
Sbjct:   198 LFSKIANKRIGSMESFSNALASKGWTIYKTKENPTPESTTNGVSSVYLFRKVYTGRIMTR 257

Query:   220 RANG-CRIRELRLPALDFKNAPLRILQYVVLMTDDVFYLA 258
               NG CR+RELRLP LDF+NAPLRILQY++LMTDD+F+LA
Sbjct:   258 EGNGSCRVRELRLPQLDFRNAPLRILQYLMLMTDDIFFLA 297

 Score = 64 (27.6 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query:     1 MLPLKLIRSLVLGDTINNNH 20
             MLPLKL RSL+L +T+N  H
Sbjct:     1 MLPLKLARSLLLHETLNLTH 20


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.143   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       174   0.00075  109 3  11 22  0.47    31
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  129 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.24u 0.10s 12.34t   Elapsed:  00:00:00
  Total cpu time:  12.24u 0.10s 12.34t   Elapsed:  00:00:00
  Start:  Fri May 10 11:30:50 2013   End:  Fri May 10 11:30:50 2013

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