BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040281
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PSZ|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
           Hydrophila (P21212 Crystal Form)
 pdb|3PSZ|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
           Hydrophila (P21212 Crystal Form)
          Length = 216

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 172 SRLNGDRIDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSGRVRANGCRIRELRL 231
             L+G+R      F  +LAG            +  S   F ++D   V   GC +R+  L
Sbjct: 136 CELSGNRWQGANLFGASLAG------------SDLSGSEFGQIDWASVNLQGCDLRQCDL 183

Query: 232 PALDFKNAPLRILQ 245
           P LD +   L  +Q
Sbjct: 184 PGLDLRRVNLDGVQ 197


>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
           Hydrophila (P21 Crystal Form)
 pdb|3PSS|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
           Hydrophila (P21 Crystal Form)
          Length = 216

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 172 SRLNGDRIDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSGRVRANGCRIRELRL 231
             L+G+R      F  +LAG            +  S   F ++D   V   GC +R+  L
Sbjct: 136 CELSGNRWQGANLFGASLAG------------SDLSGSEFGQIDWASVNLQGCDLRQCDL 183

Query: 232 PALDFKNAPLRILQ 245
           P LD +   L  +Q
Sbjct: 184 PGLDLRRVNLDGVQ 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.143    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,635,944
Number of Sequences: 62578
Number of extensions: 127525
Number of successful extensions: 257
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 2
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)