BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040281
         (258 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9C1W9|DNLI3_SCHPO DNA ligase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=adl1 PE=3 SV=1
          Length = 774

 Score = 33.1 bits (74), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 35/142 (24%)

Query: 20  HLLKQSQTSSQNNQLTSSEKTPFLLFLPTKELVTDTYRLATIARDMGMDLYPTPSLSHII 79
           + LK  Q     NQ T+ EK P  + +P +E  TDT+ +   + D               
Sbjct: 60  YALKLQQLFDSENQATAPEKLPKDVIIPEEEYHTDTFNVVKESND--------------- 104

Query: 80  FSYPSPSSSSSSSSSTSPSWHSSMSLSSSLILPHDAV---PLTF-------------PSL 123
                P  +  +S     S+ S+ S++    + +DA+   PLT+              S 
Sbjct: 105 ----KPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCRARFVSKDTKSF 160

Query: 124 STSSLSHLRSFVSLSKGLFKLV 145
           S SSL++  S +S +K   ++V
Sbjct: 161 SYSSLANTFSLISSTKSRIRIV 182


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,507,020
Number of Sequences: 539616
Number of extensions: 3199282
Number of successful extensions: 26254
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 19762
Number of HSP's gapped (non-prelim): 3140
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)