Query 040281
Match_columns 258
No_of_seqs 8 out of 10
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 06:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4782 Uncharacterized protei 91.7 0.14 3E-06 49.4 2.9 41 38-84 114-156 (377)
2 PF11968 DUF3321: Putative met 79.9 2.9 6.2E-05 37.9 4.4 55 174-230 154-209 (219)
3 COG1205 Distinct helicase fami 73.6 3.4 7.5E-05 42.8 3.6 47 38-84 114-176 (851)
4 PF11193 DUF2812: Protein of u 68.4 9.9 0.00022 28.9 4.3 37 179-220 3-39 (115)
5 PF04405 ScdA_N: Domain of Unk 50.1 13 0.00028 26.8 2.0 22 49-70 6-27 (56)
6 PRK01297 ATP-dependent RNA hel 50.1 13 0.00028 34.6 2.5 44 41-84 164-222 (475)
7 PF05990 DUF900: Alpha/beta hy 48.8 19 0.00041 31.2 3.1 42 37-84 15-58 (233)
8 COG1451 Predicted metal-depend 46.5 9.4 0.0002 33.7 1.0 32 218-249 149-180 (223)
9 PF04293 SpoVR: SpoVR like pro 39.4 26 0.00055 34.6 2.8 21 53-73 10-30 (426)
10 PRK11767 SpoVR family protein; 39.3 25 0.00054 35.4 2.8 25 50-74 16-40 (498)
11 PRK13767 ATP-dependent helicas 39.2 31 0.00067 35.7 3.4 31 39-69 84-122 (876)
12 PF13378 MR_MLE_C: Enolase C-t 38.2 18 0.00038 27.0 1.2 21 52-72 32-52 (111)
13 KOG0627 Heat shock transcripti 34.8 13 0.00029 33.0 0.1 37 179-221 43-85 (304)
14 TIGR00614 recQ_fam ATP-depende 34.7 25 0.00055 32.9 1.9 19 41-59 53-71 (470)
15 PF15260 FAM219A: Protein fami 34.5 13 0.00028 31.7 -0.0 29 48-76 82-110 (125)
16 PHA03308 transcriptional regul 34.4 30 0.00066 37.6 2.6 22 38-66 1188-1209(1463)
17 PRK04837 ATP-dependent RNA hel 32.5 39 0.00084 30.8 2.7 29 40-68 84-113 (423)
18 COG4098 comFA Superfamily II D 30.9 37 0.00081 33.9 2.4 18 38-55 304-321 (441)
19 PF06898 YqfD: Putative stage 30.7 60 0.0013 30.5 3.6 65 163-230 5-73 (385)
20 PF05148 Methyltransf_8: Hypot 30.3 93 0.002 28.5 4.6 42 175-216 159-200 (219)
21 cd08071 MPN_DUF2466 Mov34/MPN/ 29.3 60 0.0013 25.6 2.9 32 46-82 75-106 (113)
22 PF04002 RadC: RadC-like JAB d 29.2 60 0.0013 25.7 2.9 31 46-81 80-110 (123)
23 PRK11192 ATP-dependent RNA hel 28.8 48 0.001 30.2 2.6 29 40-68 74-103 (434)
24 COG3116 FtsL Cell division pro 27.7 39 0.00084 28.2 1.6 22 53-75 77-99 (105)
25 PF00270 DEAD: DEAD/DEAH box h 26.0 56 0.0012 24.6 2.2 18 40-57 45-62 (169)
26 PRK13727 conjugal transfer pil 25.2 35 0.00075 27.3 0.9 16 224-239 1-16 (80)
27 PTZ00110 helicase; Provisional 24.9 55 0.0012 31.8 2.4 17 42-58 206-222 (545)
28 COG5397 Uncharacterized conser 24.5 1.7E+02 0.0038 28.6 5.5 102 138-248 116-243 (349)
29 PTZ00043 cytochrome c oxidase 24.3 49 0.0011 31.2 1.9 31 45-78 91-121 (268)
30 PF02142 MGS: MGS-like domain 24.1 63 0.0014 24.0 2.1 20 182-201 2-21 (95)
31 PF01666 DX: DX module; Inter 24.0 50 0.0011 25.3 1.5 17 159-175 50-66 (76)
32 cd07233 Glyoxalase_I Glyoxalas 23.9 1.7E+02 0.0038 20.5 4.2 23 179-201 78-100 (121)
33 PRK04537 ATP-dependent RNA hel 23.5 66 0.0014 31.6 2.7 28 40-67 85-113 (572)
34 TIGR03817 DECH_helic helicase/ 22.8 50 0.0011 33.6 1.7 22 38-59 80-101 (742)
35 PF12672 DUF3793: Protein of u 22.7 1E+02 0.0022 26.3 3.4 38 180-217 30-67 (176)
36 KOG1670 Translation initiation 22.6 15 0.00033 33.5 -1.7 28 178-213 63-94 (212)
37 TIGR02209 ftsL_broad cell divi 22.4 58 0.0013 23.5 1.6 20 53-73 58-78 (85)
38 PLN00206 DEAD-box ATP-dependen 22.3 71 0.0015 30.6 2.5 22 39-60 196-217 (518)
39 cd04882 ACT_Bt0572_2 C-termina 21.1 72 0.0016 20.8 1.7 19 178-196 46-64 (65)
40 COG3248 Tsx Nucleoside-binding 21.0 52 0.0011 31.3 1.3 77 121-228 105-184 (284)
41 KOG0346 RNA helicase [RNA proc 20.7 75 0.0016 32.7 2.4 22 37-58 91-112 (569)
42 COG0513 SrmB Superfamily II DN 20.1 95 0.002 30.1 2.9 24 42-65 102-126 (513)
43 cd07247 SgaA_N_like N-terminal 20.0 2.1E+02 0.0046 20.1 4.0 23 178-200 68-90 (114)
No 1
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.72 E-value=0.14 Score=49.41 Aligned_cols=41 Identities=34% Similarity=0.624 Sum_probs=33.4
Q ss_pred CCcceEEEec--chhhhhhhHHHHHHHHHhCCccCCCCCcceEEeecCC
Q 040281 38 EKTPFLLFLP--TKELVTDTYRLATIARDMGMDLYPTPSLSHIIFSYPS 84 (258)
Q Consensus 38 ~k~P~L~F~P--TkEvv~DtyRLAtIARDlGMdl~ptpslshiIfS~Ps 84 (258)
...-.|+||- +--...+.||.|+|++|.|++.-| |+|||||
T Consensus 114 ~~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~p------VvFSWPS 156 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVP------VVFSWPS 156 (377)
T ss_pred CCCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcce------EEEEcCC
Confidence 3344788885 344668899999999999999877 8999998
No 2
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=79.90 E-value=2.9 Score=37.85 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=39.6
Q ss_pred ecccccchHHHHHHHhhccceeeEEeecCCCCc-eEEEEEEeecCceeecceeeeeec
Q 040281 174 LNGDRIDSMEAFSRALAGIGWTLFKTKKNSNSR-SVYLFRKVDSGRVRANGCRIRELR 230 (258)
Q Consensus 174 ~~g~ridsMe~F~r~lAg~GWs~fKtK~n~s~~-~~YlfRKVd~~rv~~g~cRvRELR 230 (258)
+++-|--++|.|..+|+..|...-|.|+ +.+ .+|+|||.......-..++-+|+|
T Consensus 154 v~NSRy~~~~~l~~im~~LGf~~~~~~~--~~Kl~y~l~r~~~~~~~~~~~f~K~~l~ 209 (219)
T PF11968_consen 154 VTNSRYMTEERLREIMESLGFTRVKYKK--SKKLAYWLFRKSGKRPNSKKFFKKKELR 209 (219)
T ss_pred hhcccccCHHHHHHHHHhCCcEEEEEEe--cCeEEEEEEeecCCCcCcccCcceeEcc
Confidence 4566778899999999999999999998 544 467999987622222234444443
No 3
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=73.63 E-value=3.4 Score=42.81 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=37.4
Q ss_pred CCcceEEEecchhhhhhhH-HHHHHHHHhCCccCCC---------------CCcceEEeecCC
Q 040281 38 EKTPFLLFLPTKELVTDTY-RLATIARDMGMDLYPT---------------PSLSHIIFSYPS 84 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~Dty-RLAtIARDlGMdl~pt---------------pslshiIfS~Ps 84 (258)
.+.-.|++-|||+|.+|+. ||.++++++|-.+... -...|||+++|.
T Consensus 114 ~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpd 176 (851)
T COG1205 114 PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPD 176 (851)
T ss_pred cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHH
Confidence 4456799999999999998 8999999999433322 145799999997
No 4
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=68.44 E-value=9.9 Score=28.95 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=29.9
Q ss_pred cchHHHHHHHhhccceeeEEeecCCCCceEEEEEEeecCcee
Q 040281 179 IDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSGRVR 220 (258)
Q Consensus 179 idsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRKVd~~rv~ 220 (258)
+|..|..-+-||.+||-+=|..- ..|.|+|...++++
T Consensus 3 ~~~~E~wL~ema~kGw~l~~~~~-----~~~~F~k~ep~~~~ 39 (115)
T PF11193_consen 3 YDKEEQWLNEMAAKGWHLKKIGG-----FGYTFEKGEPKDYR 39 (115)
T ss_pred hHHHHHHHHHHHHCCCeEEEecc-----eEEEEEECCCceEE
Confidence 56789999999999999987654 33999998777554
No 5
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=50.11 E-value=13 Score=26.82 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.8
Q ss_pred hhhhhhhHHHHHHHHHhCCccC
Q 040281 49 KELVTDTYRLATIARDMGMDLY 70 (258)
Q Consensus 49 kEvv~DtyRLAtIARDlGMdl~ 70 (258)
-|||.+-+|.|.|=+.+|+|+|
T Consensus 6 geiv~~~p~~a~vf~~~gIDfC 27 (56)
T PF04405_consen 6 GEIVAEDPRAARVFRKYGIDFC 27 (56)
T ss_pred HHHHHHChHHHHHHHHcCCccc
Confidence 4899999999999999999998
No 6
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.09 E-value=13 Score=34.60 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=30.4
Q ss_pred ceEEEecchhhhhhhHHH-HHHHHHhCCcc---CCC-----------CCcceEEeecCC
Q 040281 41 PFLLFLPTKELVTDTYRL-ATIARDMGMDL---YPT-----------PSLSHIIFSYPS 84 (258)
Q Consensus 41 P~L~F~PTkEvv~DtyRL-AtIARDlGMdl---~pt-----------pslshiIfS~Ps 84 (258)
=.|+.+||+||+.++++- ..+++.+|... ++. -...|||++.|.
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~ 222 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG 222 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHH
Confidence 368999999999999974 45666666543 222 123488988885
No 7
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=48.84 E-value=19 Score=31.19 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=29.8
Q ss_pred CCCcceEEEec--chhhhhhhHHHHHHHHHhCCccCCCCCcceEEeecCC
Q 040281 37 SEKTPFLLFLP--TKELVTDTYRLATIARDMGMDLYPTPSLSHIIFSYPS 84 (258)
Q Consensus 37 ~~k~P~L~F~P--TkEvv~DtyRLAtIARDlGMdl~ptpslshiIfS~Ps 84 (258)
+.+...||||- +...=.-.+|.|+|+.|+|.+- -=|.|||||
T Consensus 15 ~~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~------~~i~FsWPS 58 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPG------VVILFSWPS 58 (233)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc------eEEEEEcCC
Confidence 46777888884 2222234589999999999544 347899997
No 8
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=46.50 E-value=9.4 Score=33.72 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=26.0
Q ss_pred ceeecceeeeeecCCCCCCCCChhHHHHHHhh
Q 040281 218 RVRANGCRIRELRLPALDFKNAPLRILQYVVL 249 (258)
Q Consensus 218 rv~~g~cRvRELRLP~LDf~nAPlriLqYilL 249 (258)
+=+||+|....--.=.+.+.+||-+.++||++
T Consensus 149 k~~WGScs~~~~i~~~~~l~~~p~~~i~YVvv 180 (223)
T COG1451 149 KRRWGSCSKAGEIRFNWRLVMAPEEVIDYVVV 180 (223)
T ss_pred cceeeeecCCCcEEeehhhhcCCHHHHHHHHH
Confidence 55789999887333367889999999999985
No 9
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=39.43 E-value=26 Score=34.56 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHhCCccCCCC
Q 040281 53 TDTYRLATIARDMGMDLYPTP 73 (258)
Q Consensus 53 ~DtyRLAtIARDlGMdl~ptp 73 (258)
+=.=+.++|||++|.|+||+-
T Consensus 10 ~~~~~i~~~A~~~GLd~yp~~ 30 (426)
T PF04293_consen 10 RIIEEIEEIARELGLDFYPVQ 30 (426)
T ss_pred HHHHHHHHHHHHcCCCCCCce
Confidence 334468899999999999974
No 10
>PRK11767 SpoVR family protein; Provisional
Probab=39.33 E-value=25 Score=35.42 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred hhhhhhHHHHHHHHHhCCccCCCCC
Q 040281 50 ELVTDTYRLATIARDMGMDLYPTPS 74 (258)
Q Consensus 50 Evv~DtyRLAtIARDlGMdl~ptps 74 (258)
+|-+-.=++++|||++|.|+||.-.
T Consensus 16 ~L~~~~~~I~~iA~~~GLD~yp~~~ 40 (498)
T PRK11767 16 LLQRYLDEIERVAKEYGLDTYPNQI 40 (498)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCceE
Confidence 3444455789999999999999753
No 11
>PRK13767 ATP-dependent helicase; Provisional
Probab=39.21 E-value=31 Score=35.65 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=23.5
Q ss_pred CcceEEEecchhhhhhhHH--------HHHHHHHhCCcc
Q 040281 39 KTPFLLFLPTKELVTDTYR--------LATIARDMGMDL 69 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyR--------LAtIARDlGMdl 69 (258)
+.-.|+++|||||..|.|+ +..+|+.+|.++
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~ 122 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEEL 122 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3448999999999999986 335676677664
No 12
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=38.20 E-value=18 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHhCCccCCC
Q 040281 52 VTDTYRLATIARDMGMDLYPT 72 (258)
Q Consensus 52 v~DtyRLAtIARDlGMdl~pt 72 (258)
++.+.|++++|+..|+++.|.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h 52 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPH 52 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEB
T ss_pred HHHHHHHHHHHHHhCCCEEec
Confidence 789999999999999998653
No 13
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=34.84 E-value=13 Score=32.97 Aligned_cols=37 Identities=38% Similarity=0.411 Sum_probs=23.9
Q ss_pred cchHHHHHHHhhccceeeEEeecCCC------CceEEEEEEeecCceee
Q 040281 179 IDSMEAFSRALAGIGWTLFKTKKNSN------SRSVYLFRKVDSGRVRA 221 (258)
Q Consensus 179 idsMe~F~r~lAg~GWs~fKtK~n~s------~~~~YlfRKVd~~rv~~ 221 (258)
|-.-+.|++.+-=. .| |-|+. =+| |-|||||+++.+|
T Consensus 43 v~d~~~F~~~~Lp~---~F--Kh~NfsSFvRQLN~-YgFrKv~~~~~~w 85 (304)
T KOG0627|consen 43 IWNPEEFAKVLLPL---YF--KHNNFSSFVRQLNM-YGFRKVDFKSDRW 85 (304)
T ss_pred cCCHHHHHHHHhHH---hc--cccCccceeeeecc-cceeecCCCCCce
Confidence 44567788776543 23 33333 334 9999999777777
No 14
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.66 E-value=25 Score=32.92 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.5
Q ss_pred ceEEEecchhhhhhhHHHH
Q 040281 41 PFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 41 P~L~F~PTkEvv~DtyRLA 59 (258)
..||++||+|||.|+++-.
T Consensus 53 ~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQL 71 (470)
T ss_pred cEEEEecHHHHHHHHHHHH
Confidence 4799999999999998754
No 15
>PF15260 FAM219A: Protein family FAM219A
Probab=34.46 E-value=13 Score=31.66 Aligned_cols=29 Identities=38% Similarity=0.683 Sum_probs=24.0
Q ss_pred chhhhhhhHHHHHHHHHhCCccCCCCCcc
Q 040281 48 TKELVTDTYRLATIARDMGMDLYPTPSLS 76 (258)
Q Consensus 48 TkEvv~DtyRLAtIARDlGMdl~ptpsls 76 (258)
|+-|++|.|||-+|--|=-.||-|.-...
T Consensus 82 ~~QLlkDGy~LDE~pDdEdLDLIPPk~~~ 110 (125)
T PF15260_consen 82 SQQLLKDGYRLDEIPDDEDLDLIPPKPVS 110 (125)
T ss_pred HHHHHhcccccccCCchhccccCCCcccc
Confidence 36688999999999999999998865443
No 16
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=34.40 E-value=30 Score=37.58 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=13.6
Q ss_pred CCcceEEEecchhhhhhhHHHHHHHHHhC
Q 040281 38 EKTPFLLFLPTKELVTDTYRLATIARDMG 66 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLAtIARDlG 66 (258)
-|.|+|--|- .-||-.+||.|.
T Consensus 1188 vkhpflthvt-------lrrlrdvaramd 1209 (1463)
T PHA03308 1188 VKHPFLTHVT-------LRRLRDVARAMD 1209 (1463)
T ss_pred cCCchhhhhh-------HHHHHHHHHHHh
Confidence 5667765442 236778888764
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.53 E-value=39 Score=30.84 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred cceEEEecchhhhhhhHHH-HHHHHHhCCc
Q 040281 40 TPFLLFLPTKELVTDTYRL-ATIARDMGMD 68 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyRL-AtIARDlGMd 68 (258)
.-.|+.+||+||+.+.++. -.+++.+|..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~ 113 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLK 113 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCce
Confidence 3478999999999999874 4566666643
No 18
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=30.95 E-value=37 Score=33.88 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=16.3
Q ss_pred CCcceEEEecchhhhhhh
Q 040281 38 EKTPFLLFLPTKELVTDT 55 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~Dt 55 (258)
++.|+|+|+|+.|.|..+
T Consensus 304 ~~~P~liF~p~I~~~eq~ 321 (441)
T COG4098 304 TGRPVLIFFPEIETMEQV 321 (441)
T ss_pred cCCcEEEEecchHHHHHH
Confidence 789999999999999865
No 19
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=30.72 E-value=60 Score=30.48 Aligned_cols=65 Identities=26% Similarity=0.400 Sum_probs=48.3
Q ss_pred ccccceeeeeeecccccchHHHHHHHhhccceeeEEeecCCCCceEEEEEEeecCceee----cceeeeeec
Q 040281 163 WDCCSFSLFSRLNGDRIDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSGRVRA----NGCRIRELR 230 (258)
Q Consensus 163 wdc~s~SL~sr~~g~ridsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRKVd~~rv~~----g~cRvRELR 230 (258)
|.+..+.+-.++.|. ..|+|-+.++..|=.++..|.-+.+....--+-=|+++++- -+||+|-++
T Consensus 5 ~~~~~Gyv~i~v~G~---~~ErFlNl~~~~gI~lw~i~~~~~~~~~~~i~~~d~~~lr~i~rkt~~rv~I~~ 73 (385)
T PF06898_consen 5 WNYIRGYVRIRVEGE---SPERFLNLCARRGIYLWDIKRKDEDGIEAKISLKDFKKLRPIARKTGCRVRILK 73 (385)
T ss_pred heeeeEEEEEEEEEC---CHHHHHHHHHHCCCEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHHCCEEEEEE
Confidence 445788899999995 67999999999999999988854334333333447777765 679988765
No 20
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=30.31 E-value=93 Score=28.52 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=26.1
Q ss_pred cccccchHHHHHHHhhccceeeEEeecCCCCceEEEEEEeec
Q 040281 175 NGDRIDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDS 216 (258)
Q Consensus 175 ~g~ridsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRKVd~ 216 (258)
..-|++..++|.+++...|..+=+....++-=..+.|+|.+.
T Consensus 159 V~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 159 VKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp EGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SS
T ss_pred ecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCc
Confidence 345788999999999999988766554333333445677763
No 21
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=29.30 E-value=60 Score=25.57 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=27.3
Q ss_pred ecchhhhhhhHHHHHHHHHhCCccCCCCCcceEEeec
Q 040281 46 LPTKELVTDTYRLATIARDMGMDLYPTPSLSHIIFSY 82 (258)
Q Consensus 46 ~PTkEvv~DtyRLAtIARDlGMdl~ptpslshiIfS~ 82 (258)
-|.+|=+.=|-||+..++-||.+| ++|||++-
T Consensus 75 ~PS~~D~~~T~~l~~~~~~l~i~l-----lDHiIi~~ 106 (113)
T cd08071 75 TPSREDIELTKRLKEAGELLGIRL-----LDHIIVGD 106 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEE-----eeEEEEcC
Confidence 377777778899999999999988 79999863
No 22
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=29.17 E-value=60 Score=25.73 Aligned_cols=31 Identities=39% Similarity=0.554 Sum_probs=25.1
Q ss_pred ecchhhhhhhHHHHHHHHHhCCccCCCCCcceEEee
Q 040281 46 LPTKELVTDTYRLATIARDMGMDLYPTPSLSHIIFS 81 (258)
Q Consensus 46 ~PTkEvv~DtyRLAtIARDlGMdl~ptpslshiIfS 81 (258)
-|.+|=+.=|-||..+|+-||.++ ++|||+.
T Consensus 80 ~PS~~D~~~T~~L~~~~~~l~I~l-----lDHiIv~ 110 (123)
T PF04002_consen 80 EPSDADIALTRRLKKAARLLGIEL-----LDHIIVG 110 (123)
T ss_dssp S--HHHHHHHHHHHHHHHHHT-EE-----EEEEEEE
T ss_pred CCCHhHHHHHHHHHHHHHHcCCee-----eeEEEEe
Confidence 578888888999999999999987 6999985
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=28.84 E-value=48 Score=30.19 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=21.6
Q ss_pred cceEEEecchhhhhhhHH-HHHHHHHhCCc
Q 040281 40 TPFLLFLPTKELVTDTYR-LATIARDMGMD 68 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyR-LAtIARDlGMd 68 (258)
.-.|+.+||+||+.+.++ +..+++.+|.+
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~ 103 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLD 103 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcE
Confidence 347999999999998875 45566666543
No 24
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=27.69 E-value=39 Score=28.16 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=17.8
Q ss_pred hhhHHHHHHHH-HhCCccCCCCCc
Q 040281 53 TDTYRLATIAR-DMGMDLYPTPSL 75 (258)
Q Consensus 53 ~DtyRLAtIAR-DlGMdl~ptpsl 75 (258)
.|--|+..||| ++||. +|+|.-
T Consensus 77 ~~hsRVe~iAreqL~M~-~pd~~q 99 (105)
T COG3116 77 GDHSRVESIAREQLKMK-HPDPAQ 99 (105)
T ss_pred hhHHHHHHHHHHHhcCC-CCChHh
Confidence 46679999999 99998 577653
No 25
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=25.99 E-value=56 Score=24.62 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=16.1
Q ss_pred cceEEEecchhhhhhhHH
Q 040281 40 TPFLLFLPTKELVTDTYR 57 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyR 57 (258)
.-.++.+||+||+.++++
T Consensus 45 ~~~lii~P~~~l~~q~~~ 62 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFE 62 (169)
T ss_dssp SEEEEEESSHHHHHHHHH
T ss_pred ceEEEEeecccccccccc
Confidence 478999999999999984
No 26
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=25.23 E-value=35 Score=27.31 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.9
Q ss_pred eeeeeecCCCCCCCCC
Q 040281 224 CRIRELRLPALDFKNA 239 (258)
Q Consensus 224 cRvRELRLP~LDf~nA 239 (258)
||-|.+|||++|-+.-
T Consensus 1 ~~k~k~~lP~~DitGm 16 (80)
T PRK13727 1 ISKRRFSLPRLDITGM 16 (80)
T ss_pred CcccccCCCCCCCcce
Confidence 7889999999998763
No 27
>PTZ00110 helicase; Provisional
Probab=24.88 E-value=55 Score=31.77 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.9
Q ss_pred eEEEecchhhhhhhHHH
Q 040281 42 FLLFLPTKELVTDTYRL 58 (258)
Q Consensus 42 ~L~F~PTkEvv~DtyRL 58 (258)
.|+++||+||+.+++..
T Consensus 206 ~LIL~PTreLa~Qi~~~ 222 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQ 222 (545)
T ss_pred EEEECChHHHHHHHHHH
Confidence 57778999999987654
No 28
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=1.7e+02 Score=28.57 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=62.7
Q ss_pred cccceEEEEeecCCCCCCCCCCCCCccccceeeeeeeccccc------------------chHHHHHHHhhccceeeEEe
Q 040281 138 SKGLFKLVFVTGNSESKVDNSSSSHWDCCSFSLFSRLNGDRI------------------DSMEAFSRALAGIGWTLFKT 199 (258)
Q Consensus 138 S~glFklv~~~~~~~~~~sns~~Snwdc~s~SL~sr~~g~ri------------------dsMe~F~r~lAg~GWs~fKt 199 (258)
+-|+|++--.-- +.--..|-++=|++|+.|..| |+|..|-.+|.|+--++=--
T Consensus 116 ~aGlFRlrg~lv---------GTvAF~~Y~GlLgvrlp~~a~~TgDaDiAqd~aiS~evdDsl~~il~lLr~~D~sFrpv 186 (349)
T COG5397 116 SAGLFRLRGTLV---------GTVAFQTYSGLLGVRLPGTAIQTGDADIAQDYAISREVDDSLPPILDLLRSVDPSFRPV 186 (349)
T ss_pred hCceeeecceEE---------eeeeeeeccceeeeeecCchhhcCCchHHHhhhhhHHhcccccHHHHHHhccCcccccC
Confidence 579999853322 344577889999999987665 45667777888777665322
Q ss_pred ecCCCCceEEEEEEeecCceee-----cc--eeeeeecCCCCC-CCCChhHHHHHHh
Q 040281 200 KKNSNSRSVYLFRKVDSGRVRA-----NG--CRIRELRLPALD-FKNAPLRILQYVV 248 (258)
Q Consensus 200 K~n~s~~~~YlfRKVd~~rv~~-----g~--cRvRELRLP~LD-f~nAPlriLqYil 248 (258)
-.........-|+.-|.-+|.+ |+ ---.--|+|+|. -.-.|||-|.|++
T Consensus 187 Ph~~d~ak~~~fqn~~~y~VefLTtnr~sdd~~~~ps~mpALggasA~pLrfLdfLi 243 (349)
T COG5397 187 PHRSDPAKSSAFQNRDGYRVEFLTTNRGSDDYLDQPSPMPALGGASADPLRFLDFLI 243 (349)
T ss_pred CccCCCccceeeecCCCeEEEEeccCcCCcccccCCCCCcccCCCCccchhHHHHHH
Confidence 2111122224455555545555 11 111124799999 5556999999975
No 29
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=24.30 E-value=49 Score=31.21 Aligned_cols=31 Identities=35% Similarity=0.719 Sum_probs=23.4
Q ss_pred EecchhhhhhhHHHHHHHHHhCCccCCCCCcceE
Q 040281 45 FLPTKELVTDTYRLATIARDMGMDLYPTPSLSHI 78 (258)
Q Consensus 45 F~PTkEvv~DtyRLAtIARDlGMdl~ptpslshi 78 (258)
.+..+.|.+..|+ .+||||||.+--.| ..||
T Consensus 91 ll~~~~l~~ksyk--qla~d~gmqi~~~~-~~hm 121 (268)
T PTZ00043 91 LLDPETLPKKSYK--QLARDMGMQIVNEP-SEHM 121 (268)
T ss_pred ccChhhcchHHHH--HHHHHhCceecCCc-hHHH
Confidence 4567778888886 78999999986544 4665
No 30
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=24.08 E-value=63 Score=24.00 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=18.4
Q ss_pred HHHHHHHhhccceeeEEeec
Q 040281 182 MEAFSRALAGIGWTLFKTKK 201 (258)
Q Consensus 182 Me~F~r~lAg~GWs~fKtK~ 201 (258)
|..|++.|+..||.+|-|..
T Consensus 2 ~~~~a~~l~~lG~~i~AT~g 21 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYATEG 21 (95)
T ss_dssp HHHHHHHHHHTTSEEEEEHH
T ss_pred HHHHHHHHHHCCCEEEEChH
Confidence 67899999999999999976
No 31
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=23.97 E-value=50 Score=25.30 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.1
Q ss_pred CCCCccccceeeeeeec
Q 040281 159 SSSHWDCCSFSLFSRLN 175 (258)
Q Consensus 159 ~~Snwdc~s~SL~sr~~ 175 (258)
-.+|+||++++.++|.+
T Consensus 50 C~~N~DC~~~~VCV~~~ 66 (76)
T PF01666_consen 50 CTSNRDCGSGSVCVREN 66 (76)
T ss_pred cccCcccCCCcEEEEEE
Confidence 78999999999999944
No 32
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=23.94 E-value=1.7e+02 Score=20.50 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=18.9
Q ss_pred cchHHHHHHHhhccceeeEEeec
Q 040281 179 IDSMEAFSRALAGIGWTLFKTKK 201 (258)
Q Consensus 179 idsMe~F~r~lAg~GWs~fKtK~ 201 (258)
++++|+..+.|..+|+.+-....
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~ 100 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPG 100 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCc
Confidence 45699999999999999987543
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.53 E-value=66 Score=31.57 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=20.7
Q ss_pred cceEEEecchhhhhhhHHH-HHHHHHhCC
Q 040281 40 TPFLLFLPTKELVTDTYRL-ATIARDMGM 67 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyRL-AtIARDlGM 67 (258)
.-.|+++||+||+.++|.. ..++.++|.
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i 113 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGL 113 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCc
Confidence 4589999999999999864 445555543
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=22.77 E-value=50 Score=33.64 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.0
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+.-.|++.|||||.+|+++-.
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l 101 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAV 101 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHH
Confidence 3456899999999999999754
No 35
>PF12672 DUF3793: Protein of unknown function (DUF3793); InterPro: IPR024523 This family of bacterial proteins is functionally uncharacterised. The proteins in this family contain two conserved sequence motifs: PHE and LGYP.
Probab=22.73 E-value=1e+02 Score=26.31 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=31.8
Q ss_pred chHHHHHHHhhccceeeEEeecCCCCceEEEEEEeecC
Q 040281 180 DSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSG 217 (258)
Q Consensus 180 dsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRKVd~~ 217 (258)
+.++++-+.+++.|=.++-.++......+|+||+--.+
T Consensus 30 ~~~~~~~~~l~~~gl~~~~L~~~~~~~lilvYr~~~L~ 67 (176)
T PF12672_consen 30 ELWEKYNRELNPKGLSFRILKECEGRVLILVYREKLLE 67 (176)
T ss_pred HHHHHHHHHhhhcCcEEEEEEecCCeEEEEEEeHHHHH
Confidence 44677888899999999999998889999999985443
No 36
>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]
Probab=22.60 E-value=15 Score=33.50 Aligned_cols=28 Identities=32% Similarity=0.731 Sum_probs=24.0
Q ss_pred ccchHHHHHHHhhccceeeEEeecCCC----CceEEEEEE
Q 040281 178 RIDSMEAFSRALAGIGWTLFKTKKNSN----SRSVYLFRK 213 (258)
Q Consensus 178 ridsMe~F~r~lAg~GWs~fKtK~n~s----~~~~YlfRK 213 (258)
..+|.|+| |++|.+-++|+ +.-||+|||
T Consensus 63 tF~TVeeF--------W~Ly~~I~~ps~L~~~sDy~lFk~ 94 (212)
T KOG1670|consen 63 TFDTVEEF--------WSLYNNIKPPSGLNRGSDYSLFKK 94 (212)
T ss_pred ccccHHHH--------HHHHhccCChhhCCccccHHHHhc
Confidence 46899999 99999999888 677899997
No 37
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.37 E-value=58 Score=23.47 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHH-hCCccCCCC
Q 040281 53 TDTYRLATIARD-MGMDLYPTP 73 (258)
Q Consensus 53 ~DtyRLAtIARD-lGMdl~ptp 73 (258)
.|.-|+..|||+ +||-. |++
T Consensus 58 ~~~~rIe~~Ar~~lgM~~-p~~ 78 (85)
T TIGR02209 58 SRHERIEKIAKKQLGMKL-PDA 78 (85)
T ss_pred cCHHHHHHHHHHhcCCCC-CCC
Confidence 467789999994 59963 443
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=22.35 E-value=71 Score=30.63 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=16.9
Q ss_pred CcceEEEecchhhhhhhHHHHH
Q 040281 39 KTPFLLFLPTKELVTDTYRLAT 60 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRLAt 60 (258)
+.-.|+.+||+||+.+.++.+.
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHH
Confidence 3457888999999988776543
No 39
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.08 E-value=72 Score=20.77 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=15.2
Q ss_pred ccchHHHHHHHhhccceee
Q 040281 178 RIDSMEAFSRALAGIGWTL 196 (258)
Q Consensus 178 ridsMe~F~r~lAg~GWs~ 196 (258)
++++.|...++|+.+||.+
T Consensus 46 ~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 46 RTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred EeCCHHHHHHHHHHCCceE
Confidence 3444889999999999975
No 40
>COG3248 Tsx Nucleoside-binding outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=20.96 E-value=52 Score=31.27 Aligned_cols=77 Identities=30% Similarity=0.436 Sum_probs=49.7
Q ss_pred CCCCCchhhhhhhhhhccccceEEEEeecCCCCCCCCCCC---CCccccceeeeeeecccccchHHHHHHHhhccceeeE
Q 040281 121 PSLSTSSLSHLRSFVSLSKGLFKLVFVTGNSESKVDNSSS---SHWDCCSFSLFSRLNGDRIDSMEAFSRALAGIGWTLF 197 (258)
Q Consensus 121 PsLs~s~L~hLr~Fv~LS~glFklv~~~~~~~~~~sns~~---Snwdc~s~SL~sr~~g~ridsMe~F~r~lAg~GWs~f 197 (258)
|++|-..||- +.||=|-||=|.++..-+=++++--+ |-|--+ | |--|+ +||-+
T Consensus 105 PR~S~dklTg----aDlSFGPvkevy~A~~ye~d~gd~ka~~~s~~~mG---l-----G~Di~-----------~p~f~- 160 (284)
T COG3248 105 PRFSIDKLTG----ADLSFGPVKEVYFANNYEYDMGDNKAGRQSTWYMG---L-----GTDID-----------TPLFM- 160 (284)
T ss_pred cceeeccccc----cccccccceeEEEeceeEEcCCcccccceeeEEec---c-----Ccccc-----------cCCcc-
Confidence 7777666665 57889999999999877666544322 223221 1 11221 23432
Q ss_pred EeecCCCCceEEEEEEeecCceeecceeeee
Q 040281 198 KTKKNSNSRSVYLFRKVDSGRVRANGCRIRE 228 (258)
Q Consensus 198 KtK~n~s~~~~YlfRKVd~~rv~~g~cRvRE 228 (258)
.=..=+|||-|-||++|+|.|+.-
T Consensus 161 -------~~~LN~Y~kydgNr~~w~g~qi~~ 184 (284)
T COG3248 161 -------SLSLNVYAKYDGNRNEWDGYQIKI 184 (284)
T ss_pred -------eEEEEEEeccCCCccccCceEEEE
Confidence 223348999999999999999864
No 41
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=20.66 E-value=75 Score=32.69 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=17.8
Q ss_pred CCCcceEEEecchhhhhhhHHH
Q 040281 37 SEKTPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 37 ~~k~P~L~F~PTkEvv~DtyRL 58 (258)
+...-.++.||||||.+..|.+
T Consensus 91 e~~~sa~iLvPTkEL~qQvy~v 112 (569)
T KOG0346|consen 91 EQGPSAVILVPTKELAQQVYKV 112 (569)
T ss_pred cccceeEEEechHHHHHHHHHH
Confidence 3556679999999999998854
No 42
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=20.12 E-value=95 Score=30.11 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.8
Q ss_pred eEEEecchhhhhhhHHHH-HHHHHh
Q 040281 42 FLLFLPTKELVTDTYRLA-TIARDM 65 (258)
Q Consensus 42 ~L~F~PTkEvv~DtyRLA-tIARDl 65 (258)
.|+++||+||....+..+ .+++.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc
Confidence 999999999998887754 355544
No 43
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=20.05 E-value=2.1e+02 Score=20.08 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=18.7
Q ss_pred ccchHHHHHHHhhccceeeEEee
Q 040281 178 RIDSMEAFSRALAGIGWTLFKTK 200 (258)
Q Consensus 178 ridsMe~F~r~lAg~GWs~fKtK 200 (258)
.++.+|++.+.|..+|+++-+-.
T Consensus 68 ~v~di~~~~~~l~~~g~~~~~~~ 90 (114)
T cd07247 68 AVDDVDAAAARVEAAGGKVLVPP 90 (114)
T ss_pred EeCCHHHHHHHHHHCCCEEEeCC
Confidence 46679999999999999987543
Done!