Query 040281
Match_columns 258
No_of_seqs 8 out of 10
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 10:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 58.9 11 0.00037 29.6 4.2 30 39-68 102-132 (242)
2 3tbk_A RIG-I helicase domain; 47.3 16 0.00055 31.0 3.7 30 39-68 52-82 (555)
3 1qde_A EIF4A, translation init 46.4 13 0.00043 28.4 2.7 30 38-67 81-111 (224)
4 1vec_A ATP-dependent RNA helic 45.7 16 0.00056 27.2 3.2 21 39-59 71-91 (206)
5 3ber_A Probable ATP-dependent 45.4 20 0.00069 28.6 3.9 30 39-68 111-141 (249)
6 2oxc_A Probable ATP-dependent 44.7 17 0.00057 28.3 3.2 22 38-59 91-112 (230)
7 3dkp_A Probable ATP-dependent 44.6 16 0.00056 28.3 3.2 29 39-67 98-127 (245)
8 3ly5_A ATP-dependent RNA helic 44.5 15 0.0005 29.7 2.9 21 38-58 125-145 (262)
9 1f32_A Major pepsin inhibitor 44.1 11 0.00036 31.8 2.1 55 170-229 25-96 (149)
10 1fuu_A Yeast initiation factor 44.0 14 0.00047 30.0 2.7 31 38-68 88-119 (394)
11 3bor_A Human initiation factor 43.9 17 0.00059 28.4 3.2 22 38-59 97-118 (237)
12 2pl3_A Probable ATP-dependent 41.8 18 0.0006 28.0 2.9 22 38-59 96-117 (236)
13 1t6n_A Probable ATP-dependent 41.6 20 0.0007 27.2 3.2 20 39-58 82-101 (220)
14 1q0u_A Bstdead; DEAD protein, 40.6 21 0.00073 27.2 3.2 27 39-65 72-99 (219)
15 2gxq_A Heat resistant RNA depe 40.1 23 0.00079 26.3 3.2 21 38-58 71-91 (207)
16 2i4i_A ATP-dependent RNA helic 38.5 21 0.0007 29.4 3.0 27 41-67 103-130 (417)
17 1wrb_A DJVLGB; RNA helicase, D 38.5 22 0.00074 27.9 3.0 28 39-66 100-128 (253)
18 2db3_A ATP-dependent RNA helic 38.3 24 0.00083 30.5 3.5 30 38-67 128-158 (434)
19 3iuy_A Probable ATP-dependent 36.5 25 0.00086 26.9 3.0 22 38-59 93-114 (228)
20 2i7g_A Monooxygenase, AGR_C_41 36.3 23 0.00078 30.6 3.0 22 49-70 45-66 (376)
21 2glz_A Similar to formylmethan 35.9 26 0.00087 27.6 3.0 68 180-256 59-141 (153)
22 3fmo_B ATP-dependent RNA helic 34.7 22 0.00074 29.6 2.6 19 41-59 164-182 (300)
23 3pey_A ATP-dependent RNA helic 33.8 30 0.001 27.7 3.2 21 38-58 74-94 (395)
24 3bxo_A N,N-dimethyltransferase 32.5 58 0.002 24.5 4.4 36 178-213 203-238 (239)
25 3lyv_A Ribosome-associated fac 32.4 39 0.0013 24.5 3.3 29 205-233 27-61 (66)
26 3ka5_A Ribosome-associated pro 32.2 64 0.0022 23.4 4.4 29 205-233 26-60 (65)
27 2j0s_A ATP-dependent RNA helic 31.5 34 0.0012 28.2 3.2 30 38-67 104-134 (410)
28 3oiy_A Reverse gyrase helicase 30.4 36 0.0012 28.5 3.2 22 38-59 63-84 (414)
29 1rif_A DAR protein, DNA helica 29.8 28 0.00096 27.9 2.4 22 38-59 156-177 (282)
30 2z0m_A 337AA long hypothetical 29.8 35 0.0012 26.8 2.8 29 39-67 56-85 (337)
31 3pmo_A UDP-3-O-[3-hydroxymyris 29.5 21 0.00072 31.4 1.7 33 38-75 13-45 (372)
32 4a2q_A RIG-I, retinoic acid in 29.3 42 0.0014 31.6 3.8 30 39-68 296-326 (797)
33 3pfg_A N-methyltransferase; N, 28.6 71 0.0024 24.9 4.5 38 177-214 212-249 (263)
34 3fht_A ATP-dependent RNA helic 28.4 42 0.0014 27.3 3.2 19 40-58 96-114 (412)
35 1xti_A Probable ATP-dependent 27.4 45 0.0015 27.0 3.2 26 38-63 75-101 (391)
36 2fz4_A DNA repair protein RAD2 26.8 35 0.0012 27.3 2.5 19 39-57 133-151 (237)
37 2jgn_A DBX, DDX3, ATP-dependen 26.1 49 0.0017 25.5 3.1 19 38-56 45-63 (185)
38 3eiq_A Eukaryotic initiation f 26.1 44 0.0015 27.2 3.0 31 38-68 107-138 (414)
39 4a2p_A RIG-I, retinoic acid in 25.9 44 0.0015 28.5 3.0 30 39-68 55-85 (556)
40 2coe_A Deoxynucleotidyltransfe 25.6 84 0.0029 24.6 4.4 40 42-81 25-66 (120)
41 2zfu_A Nucleomethylin, cerebra 25.2 1.8E+02 0.0062 21.7 6.0 39 179-217 156-194 (215)
42 2jw5_A DNA polymerase lambda; 24.5 34 0.0011 25.5 1.8 39 43-81 17-57 (106)
43 3p7i_A PHND, subunit of alkylp 24.3 55 0.0019 27.7 3.3 30 40-69 15-48 (321)
44 1s2m_A Putative ATP-dependent 24.3 50 0.0017 27.0 3.0 30 38-67 88-118 (400)
45 2p9r_A Alpha-2-M, alpha-2-macr 24.1 1E+02 0.0035 21.7 4.2 43 190-232 60-102 (102)
46 3b6e_A Interferon-induced heli 23.2 52 0.0018 24.3 2.6 19 38-56 81-99 (216)
47 2fwr_A DNA repair protein RAD2 23.0 44 0.0015 28.6 2.5 19 39-57 133-151 (472)
48 1wp9_A ATP-dependent RNA helic 22.8 47 0.0016 26.8 2.5 21 38-58 51-71 (494)
49 4axg_A Eukaryotic translation 22.5 17 0.0006 31.3 -0.1 28 178-213 98-129 (248)
50 3r68_A Na(+)/H(+) exchange reg 21.7 81 0.0028 21.3 3.2 36 166-201 48-85 (95)
51 1hv8_A Putative ATP-dependent 21.6 62 0.0021 25.6 2.9 21 38-58 73-93 (367)
52 4a2w_A RIG-I, retinoic acid in 21.2 69 0.0024 31.3 3.7 30 39-68 296-326 (936)
53 3rao_A Putative luciferase-lik 21.0 75 0.0026 27.9 3.6 39 35-73 17-68 (371)
54 2oca_A DAR protein, ATP-depend 20.8 52 0.0018 28.4 2.5 22 38-59 156-177 (510)
55 3fmp_B ATP-dependent RNA helic 20.2 65 0.0022 27.7 3.0 19 41-59 164-182 (479)
56 2ox0_A JMJC domain-containing 20.0 60 0.0021 30.1 2.9 35 37-71 31-65 (381)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=58.86 E-value=11 Score=29.60 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=22.5
Q ss_pred CcceEEEecchhhhhhhHHH-HHHHHHhCCc
Q 040281 39 KTPFLLFLPTKELVTDTYRL-ATIARDMGMD 68 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRL-AtIARDlGMd 68 (258)
+.-.|+.+||+||+.++++. ..+++..|..
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 132 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLK 132 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCce
Confidence 44579999999999999874 4566666654
No 2
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=47.33 E-value=16 Score=30.97 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=23.3
Q ss_pred CcceEEEecchhhhhhhHHH-HHHHHHhCCc
Q 040281 39 KTPFLLFLPTKELVTDTYRL-ATIARDMGMD 68 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRL-AtIARDlGMd 68 (258)
+...|+++||+||+.++++- ..++..+|..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 66789999999999999874 4566655654
No 3
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=46.37 E-value=13 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=21.4
Q ss_pred CCcceEEEecchhhhhhhHHHH-HHHHHhCC
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA-TIARDMGM 67 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA-tIARDlGM 67 (258)
.+...|+.+||+||+.+.++-. .++...|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 3457899999999999888643 44444443
No 4
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=45.67 E-value=16 Score=27.22 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=17.4
Q ss_pred CcceEEEecchhhhhhhHHHH
Q 040281 39 KTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRLA 59 (258)
+...|+.+||+||+.++++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~ 91 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQIC 91 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHH
T ss_pred CeeEEEEeCcHHHHHHHHHHH
Confidence 446999999999999987643
No 5
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=45.40 E-value=20 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=22.1
Q ss_pred CcceEEEecchhhhhhhHHH-HHHHHHhCCc
Q 040281 39 KTPFLLFLPTKELVTDTYRL-ATIARDMGMD 68 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRL-AtIARDlGMd 68 (258)
+...|+.+||+||+.++++- ..++..+|..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~ 141 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQ 141 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCee
Confidence 34589999999999998854 4556655543
No 6
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=44.72 E-value=17 Score=28.29 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.2
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+...|+.+||+||+.++++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~ 112 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVI 112 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHH
Confidence 3567899999999999988754
No 7
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=44.64 E-value=16 Score=28.29 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=20.8
Q ss_pred CcceEEEecchhhhhhhHHHH-HHHHHhCC
Q 040281 39 KTPFLLFLPTKELVTDTYRLA-TIARDMGM 67 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRLA-tIARDlGM 67 (258)
+...|+.+||+||+.++++-. .+++..|.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGF 127 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 345899999999999998754 34444443
No 8
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=44.50 E-value=15 Score=29.70 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.3
Q ss_pred CCcceEEEecchhhhhhhHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL 58 (258)
.+.-.|+.+||+||+.++++-
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~ 145 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGV 145 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHH
Confidence 345589999999999999864
No 9
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=44.15 E-value=11 Score=31.82 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=41.0
Q ss_pred eeee-ecccccchHHHHHHHhhccceeeEEeecCCC--------------CceEEEEEE--eecCceeecceeeeee
Q 040281 170 LFSR-LNGDRIDSMEAFSRALAGIGWTLFKTKKNSN--------------SRSVYLFRK--VDSGRVRANGCRIREL 229 (258)
Q Consensus 170 L~sr-~~g~ridsMe~F~r~lAg~GWs~fKtK~n~s--------------~~~~YlfRK--Vd~~rv~~g~cRvREL 229 (258)
+++| +.||.|+.-++|..-|. -||++.|.. .---|.|-- |--|+|++||.++|||
T Consensus 25 ~~~r~L~~dei~~f~~y~~~l~-----~~~~~~~~fsp~~pk~PsFC~~~Dttqy~FdGCvVqnNKlY~gg~~~RdL 96 (149)
T 1f32_A 25 LPWTMLEGDDIQVGKEFAARVE-----DCTNVKHDMAPTCTKPPPFCGPQDMKMFNFVGCSVLGNKLFIDQKYVRDL 96 (149)
T ss_dssp EEEEECCGGGHHHHHHHHHHHH-----HHHHTTCCCSHHHHCCCGGGCCTTCEEEEETTEEEETTEEEETTEEEEEC
T ss_pred ceeecccchhhHHHHHHHHHHH-----HHHhhHhhcCCCCCCCCCccCcccceEEEEeeeEEEcCEEEECCEeeccC
Confidence 4455 68999999999988774 577776544 222366654 6778999999999998
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=44.04 E-value=14 Score=29.96 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCcceEEEecchhhhhhhHHH-HHHHHHhCCc
Q 040281 38 EKTPFLLFLPTKELVTDTYRL-ATIARDMGMD 68 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL-AtIARDlGMd 68 (258)
.+.+.|+.+||+||+.++++- ..++..+|..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 119 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIK 119 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCee
Confidence 456899999999999998874 4555555543
No 11
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=43.90 E-value=17 Score=28.42 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.1
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+...|+.+||+||+.++++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~ 118 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVI 118 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCceEEEEECcHHHHHHHHHHH
Confidence 3457899999999999988654
No 12
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=41.80 E-value=18 Score=27.96 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.8
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+...|+.+||+||+.++++-+
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHH
Confidence 3456899999999999988643
No 13
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=41.65 E-value=20 Score=27.19 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.9
Q ss_pred CcceEEEecchhhhhhhHHH
Q 040281 39 KTPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRL 58 (258)
+...|+.+||+||+.+.++-
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~ 101 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKE 101 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHH
T ss_pred CEEEEEEeCCHHHHHHHHHH
Confidence 45799999999999998754
No 14
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=40.58 E-value=21 Score=27.25 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=19.9
Q ss_pred CcceEEEecchhhhhhhHHH-HHHHHHh
Q 040281 39 KTPFLLFLPTKELVTDTYRL-ATIARDM 65 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRL-AtIARDl 65 (258)
+...|+.+||+||+.++++- .++++..
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 99 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFC 99 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhc
Confidence 45689999999999998864 3444433
No 15
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=40.10 E-value=23 Score=26.33 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.5
Q ss_pred CCcceEEEecchhhhhhhHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL 58 (258)
.+...|+.+||+||+.++++-
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~ 91 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASE 91 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHH
Confidence 456789999999999998764
No 16
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=38.55 E-value=21 Score=29.37 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=20.0
Q ss_pred ceEEEecchhhhhhhHHH-HHHHHHhCC
Q 040281 41 PFLLFLPTKELVTDTYRL-ATIARDMGM 67 (258)
Q Consensus 41 P~L~F~PTkEvv~DtyRL-AtIARDlGM 67 (258)
-.|+.+||+||+.++++- .+++...|.
T Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 130 (417)
T 2i4i_A 103 ISLVLAPTRELAVQIYEEARKFSYRSRV 130 (417)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSC
T ss_pred cEEEECCcHHHHHHHHHHHHHHhCcCCc
Confidence 479999999999999874 445544443
No 17
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=38.50 E-value=22 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.2
Q ss_pred CcceEEEecchhhhhhhHHH-HHHHHHhC
Q 040281 39 KTPFLLFLPTKELVTDTYRL-ATIARDMG 66 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRL-AtIARDlG 66 (258)
+...|+.+||+||+.++++- ..++...|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 128 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTP 128 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSS
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCC
Confidence 45789999999999998864 33444333
No 18
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=38.28 E-value=24 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCcceEEEecchhhhhhhHHH-HHHHHHhCC
Q 040281 38 EKTPFLLFLPTKELVTDTYRL-ATIARDMGM 67 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL-AtIARDlGM 67 (258)
.+...|+.+||+||+.++++- .+++...|.
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 158 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYL 158 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCc
Confidence 345689999999999999874 334444433
No 19
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=36.49 E-value=25 Score=26.93 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=17.1
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+.-.|+.+||+||+.+.++-.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~ 114 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAEC 114 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHH
Confidence 3445799999999999877643
No 20
>2i7g_A Monooxygenase, AGR_C_4197P; alpha-beta, TIM barrel, helix-bundle, structural genomics, P protein structure initiative; HET: MSE; 1.73A {Agrobacterium tumefaciens str}
Probab=36.25 E-value=23 Score=30.63 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=18.9
Q ss_pred hhhhhhhHHHHHHHHHhCCccC
Q 040281 49 KELVTDTYRLATIARDMGMDLY 70 (258)
Q Consensus 49 kEvv~DtyRLAtIARDlGMdl~ 70 (258)
.+-+.++.++|..|.++|.|-.
T Consensus 45 ~~~~~~~~~~A~~AE~~Gfd~~ 66 (376)
T 2i7g_A 45 ARRLRELLEEIELADQVGLDVF 66 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEE
Confidence 4677888999999999999854
No 21
>2glz_A Similar to formylmethanofuran dehydrogenase subun; structural genomics, joint center for structural genomics; HET: MSE; 1.45A {Desulfitobacterium hafniense} SCOP: d.81.3.1
Probab=35.93 E-value=26 Score=27.58 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=39.0
Q ss_pred chHHHHHHHhhccceeeEEeecCCCCceEEEEEEeecC-ceee---cce--eeeeecCCCCCCCCC-hh-------HHHH
Q 040281 180 DSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSG-RVRA---NGC--RIRELRLPALDFKNA-PL-------RILQ 245 (258)
Q Consensus 180 dsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRKVd~~-rv~~---g~c--RvRELRLP~LDf~nA-Pl-------riLq 245 (258)
|....-+..=-|+||-+|+- .++++|-|.+.|.+ .||+ ++- ++++|+ =..| |- +..+
T Consensus 59 Daiq~ltGct~Gkg~L~~~d----~gk~a~tf~~~~tg~~Vrv~~~~~~~~~~~~l~-----~g~a~~~e~~~~~~~~~~ 129 (153)
T 2glz_A 59 DAIQVLNKATIGRHALIIEE----THRYMYQFHFTGTQDIHQFTVSPAVLDHLETLR-----HPDLSPRERQNKVLEGVQ 129 (153)
T ss_dssp HHHHHHTCCCTTTTCEEECC----SSCCEEEEEETTSSEEEEEEECHHHHHHHHHTC-----CTTCCHHHHHHHHHHHHH
T ss_pred CceeeccCcEecCCCeEEec----CCCeEEEEEEcCCCCEEEEEEChhhhHHHHHHh-----ccCCCHHHHHHHHHHHHH
Confidence 33333334445788866652 45677777766766 5555 111 556665 1112 33 5778
Q ss_pred HHhhh-ccccee
Q 040281 246 YVVLM-TDDVFY 256 (258)
Q Consensus 246 YilLM-TDDiFy 256 (258)
+|+.+ -|++|-
T Consensus 130 ~il~~p~~elf~ 141 (153)
T 2glz_A 130 YVLTLEESAFCH 141 (153)
T ss_dssp HHHHSCHHHHEE
T ss_pred HHHcCChhheEE
Confidence 89988 467773
No 22
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=34.69 E-value=22 Score=29.62 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.1
Q ss_pred ceEEEecchhhhhhhHHHH
Q 040281 41 PFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 41 P~L~F~PTkEvv~DtyRLA 59 (258)
-.|+.+||+||+.++++.+
T Consensus 164 ~~lil~PtreLa~Q~~~~~ 182 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVI 182 (300)
T ss_dssp CEEEECSSHHHHHHHHHHH
T ss_pred eEEEEcCcHHHHHHHHHHH
Confidence 4788999999999988754
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=33.80 E-value=30 Score=27.73 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.6
Q ss_pred CCcceEEEecchhhhhhhHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL 58 (258)
.+...|+.+||+||+.++++-
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~ 94 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEV 94 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHH
T ss_pred CCccEEEECCCHHHHHHHHHH
Confidence 345789999999999998873
No 24
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=32.48 E-value=58 Score=24.53 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=30.8
Q ss_pred ccchHHHHHHHhhccceeeEEeecCCCCceEEEEEE
Q 040281 178 RIDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRK 213 (258)
Q Consensus 178 ridsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRK 213 (258)
+.=+.+.+.+.|..+|+.+-+......+..+++-||
T Consensus 203 ~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 203 TLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp ECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 344789999999999999988888777888898887
No 25
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=32.39 E-value=39 Score=24.50 Aligned_cols=29 Identities=10% Similarity=0.336 Sum_probs=23.1
Q ss_pred CceEEEEEEeecCceee------cceeeeeecCCC
Q 040281 205 SRSVYLFRKVDSGRVRA------NGCRIRELRLPA 233 (258)
Q Consensus 205 ~~~~YlfRKVd~~rv~~------g~cRvRELRLP~ 233 (258)
+..+|+||-.+++++.+ |+..+-|.||-+
T Consensus 27 gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~~~~ 61 (66)
T 3lyv_A 27 GHDFFIYTDSEDGATNILYRREDGNLGLIEAKLEH 61 (66)
T ss_dssp TCSEEEEEETTTCSEEEEEECTTSSEEEEEECCC-
T ss_pred CCcEEEEEeCCCCCEEEEEEECCCCEEEEEeCccc
Confidence 66788899888888877 778888888754
No 26
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=32.17 E-value=64 Score=23.35 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=21.7
Q ss_pred CceEEEEEEeecCceee------cceeeeeecCCC
Q 040281 205 SRSVYLFRKVDSGRVRA------NGCRIRELRLPA 233 (258)
Q Consensus 205 ~~~~YlfRKVd~~rv~~------g~cRvRELRLP~ 233 (258)
+..+|+||-.+++++.+ |+..+-|.||-+
T Consensus 26 gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~~~~ 60 (65)
T 3ka5_A 26 GHNFFVFQNGDSNEVNVVYKRKDGNYGLIEPELEH 60 (65)
T ss_dssp TCSEEEEEETTTTEEEEEEECTTSCEEEEECC---
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCccc
Confidence 66789999999888877 778888888754
No 27
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=31.45 E-value=34 Score=28.18 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=21.7
Q ss_pred CCcceEEEecchhhhhhhHHHH-HHHHHhCC
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA-TIARDMGM 67 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA-tIARDlGM 67 (258)
.+...|+.+||+||+.++++-. .++..+|.
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 4568999999999999988643 44444433
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=30.37 E-value=36 Score=28.48 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=17.9
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+...|+.+||+||+.++++-.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHH
Confidence 4456899999999999988643
No 29
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=29.77 E-value=28 Score=27.95 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.1
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
++.+.|+.+||+||+.+.++-.
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l 177 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDF 177 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHH
Confidence 3458999999999999887643
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=29.75 E-value=35 Score=26.81 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=20.7
Q ss_pred CcceEEEecchhhhhhhHHH-HHHHHHhCC
Q 040281 39 KTPFLLFLPTKELVTDTYRL-ATIARDMGM 67 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRL-AtIARDlGM 67 (258)
+...|+.+||+||+.++++- ..+++.+|.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 44689999999999998864 334444443
No 31
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=29.49 E-value=21 Score=31.45 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.3
Q ss_pred CCcceEEEecchhhhhhhHHHHHHHHHhCCccCCCCCc
Q 040281 38 EKTPFLLFLPTKELVTDTYRLATIARDMGMDLYPTPSL 75 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLAtIARDlGMdl~ptpsl 75 (258)
+-.|.=+|.+.. .|+|++||.-+|.++.+++..
T Consensus 13 ~~~~~~~~~~~~-----~~~~~~ia~~~~~~~~g~~~~ 45 (372)
T 3pmo_A 13 GLVPRGSHMSTL-----SYTLGQLAAHVGAEVRGDADL 45 (372)
T ss_dssp SCCCCCEEEEEE-----EEEHHHHHHHHTCEEESCTTC
T ss_pred CccccccCCCCc-----cccHHHHHHHhCCEEECCCCc
Confidence 456777888765 378999999999999987654
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=29.32 E-value=42 Score=31.61 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=24.4
Q ss_pred CcceEEEecchhhhhhhHH-HHHHHHHhCCc
Q 040281 39 KTPFLLFLPTKELVTDTYR-LATIARDMGMD 68 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyR-LAtIARDlGMd 68 (258)
+.+.|+++||+||+.++++ +...+...|..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 6789999999999999987 56667666654
No 33
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=28.63 E-value=71 Score=24.85 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=32.9
Q ss_pred cccchHHHHHHHhhccceeeEEeecCCCCceEEEEEEe
Q 040281 177 DRIDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKV 214 (258)
Q Consensus 177 ~ridsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRKV 214 (258)
.|.-+.|.+.+.|..+|+.+-+....+.+..+|+-||-
T Consensus 212 ~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 249 (263)
T 3pfg_A 212 ITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPG 249 (263)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecC
Confidence 34457999999999999999999888888889998884
No 34
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=28.41 E-value=42 Score=27.27 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.2
Q ss_pred cceEEEecchhhhhhhHHH
Q 040281 40 TPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyRL 58 (258)
...|+.+||+||+.++++.
T Consensus 96 ~~~lil~P~~~L~~q~~~~ 114 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKV 114 (412)
T ss_dssp CCEEEECSSHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHH
Confidence 3689999999999998763
No 35
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=27.44 E-value=45 Score=26.96 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=19.5
Q ss_pred CCcceEEEecchhhhhhhHH-HHHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYR-LATIAR 63 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyR-LAtIAR 63 (258)
.+...|+.+||+||+.++++ +..+++
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~ 101 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSK 101 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHh
Confidence 35579999999999999876 334443
No 36
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=26.77 E-value=35 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.6
Q ss_pred CcceEEEecchhhhhhhHH
Q 040281 39 KTPFLLFLPTKELVTDTYR 57 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyR 57 (258)
+.+.|+++||++|+.+.++
T Consensus 133 ~~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp CSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHH
Confidence 5689999999999988775
No 37
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=26.14 E-value=49 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=13.8
Q ss_pred CCcceEEEecchhhhhhhH
Q 040281 38 EKTPFLLFLPTKELVTDTY 56 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~Dty 56 (258)
.+.+.|+|++|++-+...+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~ 63 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLE 63 (185)
T ss_dssp CCSCEEEEESCHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHH
Confidence 3567999999987655443
No 38
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=26.13 E-value=44 Score=27.24 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=22.2
Q ss_pred CCcceEEEecchhhhhhhHHHH-HHHHHhCCc
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA-TIARDMGMD 68 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA-tIARDlGMd 68 (258)
.+...|+.+||+||+.++++.. .++..+|..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 138 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGAS 138 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCC
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCce
Confidence 4556899999999999887643 444555544
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=25.94 E-value=44 Score=28.48 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=23.1
Q ss_pred CcceEEEecchhhhhhhHH-HHHHHHHhCCc
Q 040281 39 KTPFLLFLPTKELVTDTYR-LATIARDMGMD 68 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyR-LAtIARDlGMd 68 (258)
+...|+.+||+||+.++++ +..++...|..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 5678999999999999886 44566655554
No 40
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.62 E-value=84 Score=24.59 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=28.6
Q ss_pred eEEEecchhhhhhhHHHHHHHHHhCCccCC--CCCcceEEee
Q 040281 42 FLLFLPTKELVTDTYRLATIARDMGMDLYP--TPSLSHIIFS 81 (258)
Q Consensus 42 ~L~F~PTkEvv~DtyRLAtIARDlGMdl~p--tpslshiIfS 81 (258)
.++|+|.+---+-..=++.+||-+|..+.. .+...|||.-
T Consensus 25 ~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve 66 (120)
T 2coe_A 25 VVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAE 66 (120)
T ss_dssp EEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEES
T ss_pred EEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEec
Confidence 466789982222334468899999998766 4778999984
No 41
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=25.17 E-value=1.8e+02 Score=21.68 Aligned_cols=39 Identities=15% Similarity=0.380 Sum_probs=30.6
Q ss_pred cchHHHHHHHhhccceeeEEeecCCCCceEEEEEEeecC
Q 040281 179 IDSMEAFSRALAGIGWTLFKTKKNSNSRSVYLFRKVDSG 217 (258)
Q Consensus 179 idsMe~F~r~lAg~GWs~fKtK~n~s~~~~YlfRKVd~~ 217 (258)
..+.+.+...|...|+.+-+....+..-.++.+||....
T Consensus 156 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~~ 194 (215)
T 2zfu_A 156 FEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPP 194 (215)
T ss_dssp CSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECSSC
T ss_pred CCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecCcc
Confidence 348899999999999999887665555677888887444
No 42
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=24.54 E-value=34 Score=25.48 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=27.7
Q ss_pred EEEecchhhhhhhHHHHHHHHHhCCccCCC--CCcceEEee
Q 040281 43 LLFLPTKELVTDTYRLATIARDMGMDLYPT--PSLSHIIFS 81 (258)
Q Consensus 43 L~F~PTkEvv~DtyRLAtIARDlGMdl~pt--pslshiIfS 81 (258)
++|+|.........-.+..||..|.....+ +...|||.-
T Consensus 17 v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd 57 (106)
T 2jw5_A 17 AHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVD 57 (106)
T ss_dssp CCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEEC
T ss_pred EEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEc
Confidence 457788743333333555999999998776 478999986
No 43
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=24.32 E-value=55 Score=27.67 Aligned_cols=30 Identities=10% Similarity=0.288 Sum_probs=17.1
Q ss_pred cceEEEecchh--hhhhhHH--HHHHHHHhCCcc
Q 040281 40 TPFLLFLPTKE--LVTDTYR--LATIARDMGMDL 69 (258)
Q Consensus 40 ~P~L~F~PTkE--vv~DtyR--LAtIARDlGMdl 69 (258)
+=.+-++|+.. -+.+.|. +..|++.+|+++
T Consensus 15 ~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~lG~~v 48 (321)
T 3p7i_A 15 ALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKV 48 (321)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHHHHCCCE
Confidence 33455667643 2223333 346899999875
No 44
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=24.27 E-value=50 Score=26.96 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=21.5
Q ss_pred CCcceEEEecchhhhhhhHHH-HHHHHHhCC
Q 040281 38 EKTPFLLFLPTKELVTDTYRL-ATIARDMGM 67 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL-AtIARDlGM 67 (258)
.+...|+.+||+||+.+.++- ..++...|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 345789999999999998863 344444444
No 45
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=24.11 E-value=1e+02 Score=21.66 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=31.2
Q ss_pred hccceeeEEeecCCCCceEEEEEEeecCceeecceeeeeecCC
Q 040281 190 AGIGWTLFKTKKNSNSRSVYLFRKVDSGRVRANGCRIRELRLP 232 (258)
Q Consensus 190 Ag~GWs~fKtK~n~s~~~~YlfRKVd~~rv~~g~cRvRELRLP 232 (258)
.|....=|++-+++..+.+.+-=+.+.+...-..++|.|..||
T Consensus 60 ~G~~~~~f~Lp~~~~~G~y~i~~~~~~~~~~~~~F~VeeyvlP 102 (102)
T 2p9r_A 60 GGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLP 102 (102)
T ss_dssp TTEEEEEEECCSSCCCEEEEEEEECTTSCEEEEEEEECCCSCC
T ss_pred CCEEEEEEECCCCCCCeeEEEEEEECCCCeEEEEEEEEEEcCC
Confidence 4778888999888888885554444434444466999999998
No 46
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=23.18 E-value=52 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.5
Q ss_pred CCcceEEEecchhhhhhhH
Q 040281 38 EKTPFLLFLPTKELVTDTY 56 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~Dty 56 (258)
.+.+.|+++||+||+.+++
T Consensus 81 ~~~~~lil~p~~~L~~q~~ 99 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLF 99 (216)
T ss_dssp CCCCEEEEESSHHHHHHHH
T ss_pred CCCcEEEEECHHHHHHHHH
Confidence 3568999999999988843
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=23.00 E-value=44 Score=28.56 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.7
Q ss_pred CcceEEEecchhhhhhhHH
Q 040281 39 KTPFLLFLPTKELVTDTYR 57 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyR 57 (258)
+.+.|+++||++|+.+.++
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~ 151 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKE 151 (472)
T ss_dssp CSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHH
Confidence 5689999999999998875
No 48
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=22.80 E-value=47 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.9
Q ss_pred CCcceEEEecchhhhhhhHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL 58 (258)
.+.+.|+.+||++|+.+.++-
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHH
Confidence 456899999999999998764
No 49
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=22.46 E-value=17 Score=31.32 Aligned_cols=28 Identities=32% Similarity=0.718 Sum_probs=20.1
Q ss_pred ccchHHHHHHHhhccceeeEEeecCCC----CceEEEEEE
Q 040281 178 RIDSMEAFSRALAGIGWTLFKTKKNSN----SRSVYLFRK 213 (258)
Q Consensus 178 ridsMe~F~r~lAg~GWs~fKtK~n~s----~~~~YlfRK 213 (258)
.++|.|.| |.+|..=+.|+ +.++|+||+
T Consensus 98 ~f~TVE~F--------W~~yn~i~~ps~l~~~~~~~lFK~ 129 (248)
T 4axg_A 98 SFDTVEDF--------WSLYNHIKPPSEIKLGSDYSLFKK 129 (248)
T ss_dssp EEEEHHHH--------HHHHTTBCCTTSSCTTEEEEEEET
T ss_pred EEcCHHHH--------HHHHHcCCCHHHCCCCceEEEEcC
Confidence 48999999 45554444444 788999985
No 50
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=21.66 E-value=81 Score=21.26 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=28.8
Q ss_pred cceeeeeeecccccchH--HHHHHHhhccceeeEEeec
Q 040281 166 CSFSLFSRLNGDRIDSM--EAFSRALAGIGWTLFKTKK 201 (258)
Q Consensus 166 ~s~SL~sr~~g~ridsM--e~F~r~lAg~GWs~fKtK~ 201 (258)
..+-....|+|..|.++ +.+..+|.+.|..+-.+.-
T Consensus 48 ~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~ 85 (95)
T 3r68_A 48 KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 85 (95)
T ss_dssp CTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 45667788999999999 9999999998876655443
No 51
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=21.60 E-value=62 Score=25.61 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=17.5
Q ss_pred CCcceEEEecchhhhhhhHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRL 58 (258)
.+...|+.+||+||+.+.++-
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~ 93 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADE 93 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHH
T ss_pred CCCcEEEEcCCHHHHHHHHHH
Confidence 456789999999999988753
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=21.18 E-value=69 Score=31.33 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=23.6
Q ss_pred CcceEEEecchhhhhhhHH-HHHHHHHhCCc
Q 040281 39 KTPFLLFLPTKELVTDTYR-LATIARDMGMD 68 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyR-LAtIARDlGMd 68 (258)
+.+.|+.+||+||+.++++ +...+..+|..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 6789999999999999987 45566655544
No 53
>3rao_A Putative luciferase-like monooxygenase; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, enzyme; 2.30A {Bacillus cereus}
Probab=20.99 E-value=75 Score=27.94 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=26.7
Q ss_pred ccCCCcceEEEecc-------------hhhhhhhHHHHHHHHHhCCccCCCC
Q 040281 35 TSSEKTPFLLFLPT-------------KELVTDTYRLATIARDMGMDLYPTP 73 (258)
Q Consensus 35 ~~~~k~P~L~F~PT-------------kEvv~DtyRLAtIARDlGMdl~ptp 73 (258)
..+++.=+-+|+|+ .+-+.+.-++|..|.++|.|..=.+
T Consensus 17 ~~~~~m~lG~~lp~~g~~~~~~~~~~~~~~~~~~~~lA~~AE~~Gfd~~~~~ 68 (371)
T 3rao_A 17 LYFQGVEYGFWLPIFGGWLRNVNDESMPPTFEYAKQTAQAAEQLGFSTTLIA 68 (371)
T ss_dssp -CCCCCEEEEECCCSSCSBTTCSCCSCCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cccCCeEEEEEcCCccccccCCCcccccCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 33345566778888 1235667789999999999875433
No 54
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=20.76 E-value=52 Score=28.44 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.4
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+.+.|+.+||++|+.+.++-.
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~ 177 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDF 177 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCeEEEEECcHHHHHHHHHHH
Confidence 4559999999999999998643
No 55
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=20.19 E-value=65 Score=27.66 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.3
Q ss_pred ceEEEecchhhhhhhHHHH
Q 040281 41 PFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 41 P~L~F~PTkEvv~DtyRLA 59 (258)
..|+.+||+||+.++++..
T Consensus 164 ~~lil~Pt~~La~Q~~~~~ 182 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVI 182 (479)
T ss_dssp CEEEECSSHHHHHHHHHHH
T ss_pred cEEEEeChHHHHHHHHHHH
Confidence 6899999999999987744
No 56
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=20.01 E-value=60 Score=30.10 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=28.3
Q ss_pred CCCcceEEEecchhhhhhhHHHHHHHHHhCCccCC
Q 040281 37 SEKTPFLLFLPTKELVTDTYRLATIARDMGMDLYP 71 (258)
Q Consensus 37 ~~k~P~L~F~PTkEvv~DtyRLAtIARDlGMdl~p 71 (258)
++..+..+|-||+|=.+|.++-.+=.+..||+=++
T Consensus 31 ~~~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~G 65 (381)
T 2ox0_A 31 NPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAG 65 (381)
T ss_dssp STTCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGS
T ss_pred CCCCCCceEcCCHHHHhCHHHHHHHHHhccccccC
Confidence 35566779999999999999987777888886554
Done!