Query 040281
Match_columns 258
No_of_seqs 8 out of 10
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 10:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gkub1 c.37.1.16 (B:1-250) He 66.6 2.3 0.00017 31.8 3.6 29 40-68 87-116 (237)
2 d2g9na1 c.37.1.19 (A:21-238) I 36.3 9.5 0.00069 28.9 2.6 19 41-59 82-100 (218)
3 d2bmfa2 c.37.1.14 (A:178-482) 34.9 9 0.00066 28.4 2.2 17 41-57 40-56 (305)
4 d1ln1a_ d.129.3.2 (A:) Phospha 33.7 13 0.00096 26.6 2.9 49 189-250 18-67 (203)
5 d1veca_ c.37.1.19 (A:) DEAD bo 33.6 15 0.0011 27.3 3.3 23 38-60 70-92 (206)
6 d1wp9a1 c.37.1.19 (A:1-200) pu 32.5 15 0.0011 25.8 3.0 20 38-57 51-70 (200)
7 d2p6ra3 c.37.1.19 (A:1-202) He 32.1 13 0.00093 26.8 2.6 20 40-59 69-88 (202)
8 d2j0sa1 c.37.1.19 (A:22-243) P 30.8 13 0.00095 28.4 2.6 19 40-58 86-104 (222)
9 d1wrba1 c.37.1.19 (A:164-401) 28.5 14 0.001 28.2 2.4 20 40-59 99-118 (238)
10 d2p9ba2 c.1.9.17 (A:71-394) Un 28.3 11 0.00081 25.2 1.5 16 53-68 302-319 (324)
11 d1jhja_ b.18.1.9 (A:) APC10/DO 28.1 24 0.0017 25.7 3.5 8 224-231 150-157 (161)
12 d1hv8a1 c.37.1.19 (A:3-210) Pu 27.9 16 0.0012 26.9 2.6 22 38-59 71-92 (208)
13 d1t6na_ c.37.1.19 (A:) Spliceo 27.3 22 0.0016 26.3 3.2 21 39-59 69-89 (207)
14 d1mvja_ g.3.6.1 (A:) Conotoxin 26.7 15 0.0011 21.6 1.6 13 159-171 9-21 (26)
15 g1hle.1 e.1.1.1 (A:,B:) Elasta 23.6 4.8 0.00035 32.3 -1.3 28 182-209 1-30 (375)
16 d1dn1a_ e.25.1.1 (A:) Neuronal 23.4 44 0.0032 28.1 4.8 41 38-84 66-107 (589)
17 d2b2na1 c.37.1.19 (A:26-333) T 22.5 41 0.003 27.2 4.3 124 37-204 12-135 (308)
18 d1yrra2 c.1.9.10 (A:54-350) N- 20.0 20 0.0014 24.1 1.5 15 54-68 277-293 (297)
No 1
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=66.57 E-value=2.3 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=23.3
Q ss_pred cceEEEecchhhhhhhH-HHHHHHHHhCCc
Q 040281 40 TPFLLFLPTKELVTDTY-RLATIARDMGMD 68 (258)
Q Consensus 40 ~P~L~F~PTkEvv~Dty-RLAtIARDlGMd 68 (258)
.-.|+.+||+||+.++| ++..+++.+|..
T Consensus 87 ~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~ 116 (237)
T d1gkub1 87 KRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116 (237)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHHcCCc
Confidence 35899999999999998 456777777654
No 2
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.31 E-value=9.5 Score=28.93 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.4
Q ss_pred ceEEEecchhhhhhhHHHH
Q 040281 41 PFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 41 P~L~F~PTkEvv~DtyRLA 59 (258)
=.|+++||+||..+.|+..
T Consensus 82 ~alil~Pt~eL~~Q~~~~~ 100 (218)
T d2g9na1 82 QALVLAPTRELAQQIQKVV 100 (218)
T ss_dssp CEEEECSSHHHHHHHHHHH
T ss_pred cEEEEcccchhhhhHHHHH
Confidence 3799999999999998754
No 3
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=34.90 E-value=9 Score=28.38 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=14.0
Q ss_pred ceEEEecchhhhhhhHH
Q 040281 41 PFLLFLPTKELVTDTYR 57 (258)
Q Consensus 41 P~L~F~PTkEvv~DtyR 57 (258)
-.|+.+||+||+.+.++
T Consensus 40 ~~lvi~Ptr~La~q~~~ 56 (305)
T d2bmfa2 40 RTLILAPTRVVAAEMEE 56 (305)
T ss_dssp CEEEEESSHHHHHHHHH
T ss_pred EEEEEccHHHHHHHHHH
Confidence 47888999999988654
No 4
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.69 E-value=13 Score=26.63 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=28.7
Q ss_pred hhccceeeEEeecCCCCceEEEEEEeecC-ceeecceeeeeecCCCCCCCCChhHHHHHHhhh
Q 040281 189 LAGIGWTLFKTKKNSNSRSVYLFRKVDSG-RVRANGCRIRELRLPALDFKNAPLRILQYVVLM 250 (258)
Q Consensus 189 lAg~GWs~fKtK~n~s~~~~YlfRKVd~~-rv~~g~cRvRELRLP~LDf~nAPlriLqYilLM 250 (258)
+.+.||.+-+.|++ +-+|+|.+-+ .+. .+|+. -.|.++|.+.+..++.-
T Consensus 18 ~~~~~W~~~~~~~g-----v~vy~~~~~~~~~~--~~k~~------~~i~~~~~~~~~~~l~d 67 (203)
T d1ln1a_ 18 LAGADWQLLVETSG-----ISIYRLLDKKTGLY--EYKVF------GVLEDCSPTLLADIYMD 67 (203)
T ss_dssp CTTTTCEEEEEETT-----EEEEEEEETTTTEE--EEEEE------EEETTSCHHHHHHHHHC
T ss_pred cCCCCCEEEEecCC-----EEEEEEecCCCCcE--EEEEE------EEEcCCCHHHHHHHHcC
Confidence 35679999998862 4566665432 322 13332 23567777777666544
No 5
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.59 E-value=15 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=19.4
Q ss_pred CCcceEEEecchhhhhhhHHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLAT 60 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLAt 60 (258)
.+...|+++||+|+...+|+.+.
T Consensus 70 ~~~~~lil~pt~el~~q~~~~~~ 92 (206)
T d1veca_ 70 DNIQAMVIVPTRELALQVSQICI 92 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHH
T ss_pred cCcceEEEeecchhhHHHHHHHH
Confidence 45568999999999999998774
No 6
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=32.46 E-value=15 Score=25.77 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=17.1
Q ss_pred CCcceEEEecchhhhhhhHH
Q 040281 38 EKTPFLLFLPTKELVTDTYR 57 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyR 57 (258)
.+...|+++||++|+.++++
T Consensus 51 ~~~~il~i~P~~~L~~q~~~ 70 (200)
T d1wp9a1 51 YGGKVLMLAPTKPLVLQHAE 70 (200)
T ss_dssp SCSCEEEECSSHHHHHHHHH
T ss_pred cCCcEEEEcCchHHHHHHHH
Confidence 45678999999999999875
No 7
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=32.06 E-value=13 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.7
Q ss_pred cceEEEecchhhhhhhHHHH
Q 040281 40 TPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyRLA 59 (258)
...|+.+||++|+.|+++-.
T Consensus 69 ~~vl~l~P~~~L~~q~~~~~ 88 (202)
T d2p6ra3 69 GKSLYVVPLRALAGEKYESF 88 (202)
T ss_dssp CCEEEEESSHHHHHHHHHHH
T ss_pred CcceeecccHHHHHHHHHHH
Confidence 35799999999999988654
No 8
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.81 E-value=13 Score=28.42 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.2
Q ss_pred cceEEEecchhhhhhhHHH
Q 040281 40 TPFLLFLPTKELVTDTYRL 58 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyRL 58 (258)
.-.|+++||+||....|+.
T Consensus 86 ~~~lil~PtreLa~Qi~~~ 104 (222)
T d2j0sa1 86 TQALILAPTRELAVQIQKG 104 (222)
T ss_dssp CCEEEECSSHHHHHHHHHH
T ss_pred ceeEEecchHHHHHHHHHH
Confidence 3479999999999999874
No 9
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=28.51 E-value=14 Score=28.22 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.9
Q ss_pred cceEEEecchhhhhhhHHHH
Q 040281 40 TPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 40 ~P~L~F~PTkEvv~DtyRLA 59 (258)
.=.|+.+||+||+.+.++..
T Consensus 99 ~~alil~pt~el~~q~~~~~ 118 (238)
T d1wrba1 99 PKCLILAPTRELAIQILSES 118 (238)
T ss_dssp CSEEEECSSHHHHHHHHHHH
T ss_pred ceEEEeccchhhhcchheee
Confidence 33699999999999999764
No 10
>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}
Probab=28.25 E-value=11 Score=25.20 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.3
Q ss_pred hhhHHHHHH--HHHhCCc
Q 040281 53 TDTYRLATI--ARDMGMD 68 (258)
Q Consensus 53 ~DtyRLAtI--ARDlGMd 68 (258)
.|.+|.||| ||-||+|
T Consensus 302 ~eaL~~aT~n~A~~lgl~ 319 (324)
T d2p9ba2 302 AEALHAATAVNASILGVD 319 (324)
T ss_dssp HHHHHHHTHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 368899998 8999986
No 11
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.08 E-value=24 Score=25.73 Aligned_cols=8 Identities=13% Similarity=0.721 Sum_probs=7.2
Q ss_pred eeeeeecC
Q 040281 224 CRIRELRL 231 (258)
Q Consensus 224 cRvRELRL 231 (258)
|||||+|+
T Consensus 150 ~~Ir~i~V 157 (161)
T d1jhja_ 150 THMRQIKI 157 (161)
T ss_dssp CEECEEEE
T ss_pred cEEEEEEE
Confidence 99999985
No 12
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=27.87 E-value=16 Score=26.93 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=17.6
Q ss_pred CCcceEEEecchhhhhhhHHHH
Q 040281 38 EKTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 38 ~k~P~L~F~PTkEvv~DtyRLA 59 (258)
.+.=.|+.+||+||+.+.++..
T Consensus 71 ~~~~~lil~pt~~l~~q~~~~~ 92 (208)
T d1hv8a1 71 NGIEAIILTPTRELAIQVADEI 92 (208)
T ss_dssp SSCCEEEECSCHHHHHHHHHHH
T ss_pred cCcceEEEeeccccchhhhhhh
Confidence 3344789999999999998864
No 13
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.29 E-value=22 Score=26.34 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=16.9
Q ss_pred CcceEEEecchhhhhhhHHHH
Q 040281 39 KTPFLLFLPTKELVTDTYRLA 59 (258)
Q Consensus 39 k~P~L~F~PTkEvv~DtyRLA 59 (258)
+.-.++.+||+||+.+.++..
T Consensus 69 ~~~~lil~PtreL~~qi~~~~ 89 (207)
T d1t6na_ 69 QVSVLVMCHTRELAFQISKEY 89 (207)
T ss_dssp CCCEEEECSCHHHHHHHHHHH
T ss_pred CceEEEEeccchhhHHHHHHH
Confidence 344799999999999987654
No 14
>d1mvja_ g.3.6.1 (A:) Conotoxin {Conus striatus, S VIb [TaxId: 6493]}
Probab=26.70 E-value=15 Score=21.61 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=10.3
Q ss_pred CCCCccccceeee
Q 040281 159 SSSHWDCCSFSLF 171 (258)
Q Consensus 159 ~~Snwdc~s~SL~ 171 (258)
....+||||+|-+
T Consensus 9 rktsydccsgscg 21 (26)
T d1mvja_ 9 RKTSYDCCSGSCG 21 (26)
T ss_dssp CTTTCCBSSCCCC
T ss_pred ccccccccccccC
Confidence 6667899999854
No 15
>g1hle.1 e.1.1.1 (A:,B:) Elastase inhibitor {Horse (Equus caballus) [TaxId: 9796]}
Probab=23.64 E-value=4.8 Score=32.33 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.0
Q ss_pred HHHHHHHhhccceeeEE--eecCCCCceEE
Q 040281 182 MEAFSRALAGIGWTLFK--TKKNSNSRSVY 209 (258)
Q Consensus 182 Me~F~r~lAg~GWs~fK--tK~n~s~~~~Y 209 (258)
||+|+++.+-.||.+|| .+.++.++.|+
T Consensus 1 ~~~~~~a~~~Fa~~l~k~~~~~~~~~N~v~ 30 (375)
T g1hle.1 1 MEQLSTANTHFAVDLFRALNESDPTGNIFI 30 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSSCEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 89999999999999999 46777666554
No 16
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.45 E-value=44 Score=28.13 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCcceEEEe-cchhhhhhhHHHHHHHHHhCCccCCCCCcceEEeecCC
Q 040281 38 EKTPFLLFL-PTKELVTDTYRLATIARDMGMDLYPTPSLSHIIFSYPS 84 (258)
Q Consensus 38 ~k~P~L~F~-PTkEvv~DtyRLAtIARDlGMdl~ptpslshiIfS~Ps 84 (258)
...|.++|| ||+|-|. .|++|+.-.-.+.-.--||+|+.+-
T Consensus 66 ~~~~aIy~i~Pt~~ni~------~i~~d~~~~~~~~Y~~~~i~F~~~~ 107 (589)
T d1dn1a_ 66 PSLEAVYLITPSEKSVH------SLISDFKDPPTAKYRAAHVFFTDSC 107 (589)
T ss_dssp TTSEEEEEECCCHHHHH------HHHHTTSSGGGCCCSEEEEEESSCC
T ss_pred CCCCEEEEEcCCHHHHH------HHHHHhcchhhcccCeEEEEECCCC
Confidence 567888888 8999874 6788886544444455699998774
No 17
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=22.46 E-value=41 Score=27.23 Aligned_cols=124 Identities=15% Similarity=0.259 Sum_probs=65.2
Q ss_pred CCCcceEEEecchhhhhhhHHHHHHHHHhCCccCCCCCcceEEeecCCCCCCCCCCCCCCCCccccccccccccCCCCcc
Q 040281 37 SEKTPFLLFLPTKELVTDTYRLATIARDMGMDLYPTPSLSHIIFSYPSPSSSSSSSSSTSPSWHSSMSLSSSLILPHDAV 116 (258)
Q Consensus 37 ~~k~P~L~F~PTkEvv~DtyRLAtIARDlGMdl~ptpslshiIfS~Ps~~~~s~ss~~~~ss~s~s~s~sss~~lp~~aV 116 (258)
+...|.|+.+|+++ +.+.||+|+-. +.+. -|+-+|+ +- .+|.+.+
T Consensus 12 ~~~~p~lvv~~~~~------~A~~l~~~L~~-~~~~-----~v~~fP~----------------~e-------~lpyd~~ 56 (308)
T d2b2na1 12 RHAGPVVLIAPDMQ------NALRLHDEISQ-FTDQ-----MVMNLAD----------------WE-------TLPYDSF 56 (308)
T ss_dssp HCSSCEEEEESSHH------HHHHHHHHHHT-TCSS-----CEEECCC----------------CC-------SCTTCSS
T ss_pred hhCCCEEEEcCCHH------HHHHHHHHHHh-cCCC-----ceEEcCC----------------cc-------cCccccC
Confidence 35689999999865 55667777742 3332 2667998 33 4454443
Q ss_pred cccCCCCCCchhhhhhhhhhccccceEEEEeecCCCCCCCCCCCCCccccceeeeeeecccccchHHHHHHHhhccceee
Q 040281 117 PLTFPSLSTSSLSHLRSFVSLSKGLFKLVFVTGNSESKVDNSSSSHWDCCSFSLFSRLNGDRIDSMEAFSRALAGIGWTL 196 (258)
Q Consensus 117 plpFPsLs~s~L~hLr~Fv~LS~glFklv~~~~~~~~~~sns~~Snwdc~s~SL~sr~~g~ridsMe~F~r~lAg~GWs~ 196 (258)
. |=+.+...++.-|+..++--++ ++..+...--. ....-+.-.-..+.=-.|+.|| +|++.+.|...|+.-
T Consensus 57 s-~~~~i~~~R~~~L~~l~~~~~~---iiits~~al~~----~~~p~~~~~~~~~~l~~g~~~~-~~~l~~~L~~~GY~~ 127 (308)
T d2b2na1 57 S-PHQDIISSRLSTLYQLPTMQRG---VLIVPVNTLMQ----RVCPHSFLHGHALVMKKGQRLS-RDALRTQLDSAGYRH 127 (308)
T ss_dssp C-CCHHHHHHHHHHHHHGGGCCSS---EEEEEHHHHTB----CCCCHHHHHHHCEEEETTCBCC-HHHHHHHHHHTTCEE
T ss_pred C-CChHHHHHHHHHHHHHhhcCCc---eEEeechhhhh----hcccHHHHHHHHHhhhhhcccc-HHHHHHHHHHHhhcc
Confidence 2 2233334556666655543333 33333100000 1111111111111122477775 999999999999976
Q ss_pred EEeecCCC
Q 040281 197 FKTKKNSN 204 (258)
Q Consensus 197 fKtK~n~s 204 (258)
=..-+.|.
T Consensus 128 ~~~V~~~G 135 (308)
T d2b2na1 128 VDQVMEHG 135 (308)
T ss_dssp CSSCCSTT
T ss_pred cchhccce
Confidence 55444443
No 18
>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=20.03 E-value=20 Score=24.06 Aligned_cols=15 Identities=40% Similarity=0.846 Sum_probs=11.7
Q ss_pred hhHHHHHH--HHHhCCc
Q 040281 54 DTYRLATI--ARDMGMD 68 (258)
Q Consensus 54 DtyRLAtI--ARDlGMd 68 (258)
|..|+||| ||-||||
T Consensus 277 ~al~~aT~n~A~~LGld 293 (297)
T d1yrra2 277 EVLRMATLYPARAIGVE 293 (297)
T ss_dssp HHHHHHTHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 56778887 8888886
Done!