BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040282
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQKASEADRKSAE
KLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQK
RMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFRKK

High Scoring Gene Products

Symbol, full name Information P value
SDE5
AT3G15390 		protein from Arabidopsis thaliana 2.9e-19
AT5G58720 protein from Arabidopsis thaliana 6.5e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040282
        (161 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2090181 - symbol:SDE5 "AT3G15390" species:3702...   237  2.9e-19   1
TAIR|locus:2178878 - symbol:AT5G58720 "AT5G58720" species...   142  6.5e-09   1


>TAIR|locus:2090181 [details] [associations]
            symbol:SDE5 "AT3G15390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0010267 "production of ta-siRNAs involved in RNA interference"
            evidence=TAS] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0010267
            EMBL:AB022218 InterPro:IPR013899 Pfam:PF08590 UniGene:At.11972
            UniGene:At.49625 IPI:IPI00944282 RefSeq:NP_188158.4
            ProteinModelPortal:Q9LUQ3 STRING:Q9LUQ3 EnsemblPlants:AT3G15390.1
            GeneID:820778 KEGG:ath:AT3G15390 TAIR:At3g15390 eggNOG:NOG267526
            HOGENOM:HOG000093041 OMA:ETEIWSE PhylomeDB:Q9LUQ3
            ProtClustDB:CLSN2692979 Genevestigator:Q9LUQ3 Uniprot:Q9LUQ3
        Length = 490

 Score = 237 (88.5 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 55/126 (43%), Positives = 79/126 (62%)

Query:    43 QGHFFRQKASEADRKSAEKLVKTRN--------NEVMTLDWHSIEPKEVVCLLRVHLTSL 94
             +GHFF QKA EAD KS  K++            +EV+T++ +  E KE + LL+  L   
Sbjct:   367 KGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYF 426

Query:    95 SGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKR 154
             SGI + K+LR+ +G   ED K  ++++ I KLL+ ESI WTE+  G  I+I+VD IDPK+
Sbjct:   427 SGISSFKYLRVQLGEKKEDFK--SKRKHIVKLLEGESIPWTEEDGGLVIMIRVDEIDPKK 484

Query:   155 LSFFRK 160
             LSF +K
Sbjct:   485 LSFAKK 490


>TAIR|locus:2178878 [details] [associations]
            symbol:AT5G58720 "AT5G58720" species:3702 "Arabidopsis
            thaliana" [GO:0003684 "damaged DNA binding" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006298
            "mismatch repair" evidence=ISS] [GO:0000956 "nuclear-transcribed
            mRNA catabolic process" evidence=RCA] Pfam:PF01713
            INTERPRO:IPR002625 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AB020755 UniGene:At.49190 UniGene:At.7874 SMART:SM00463
            PROSITE:PS50828 InterPro:IPR013899 Pfam:PF08590 EMBL:AY062752
            EMBL:AY114674 EMBL:AJ006021 IPI:IPI00540523 PIR:T51367
            RefSeq:NP_200680.1 ProteinModelPortal:O65573 SMR:O65573
            IntAct:O65573 PRIDE:O65573 EnsemblPlants:AT5G58720.1 GeneID:835986
            KEGG:ath:AT5G58720 TAIR:At5g58720 HOGENOM:HOG000064626
            InParanoid:O65573 OMA:DCELSMA PhylomeDB:O65573
            ProtClustDB:CLSN2686279 ArrayExpress:O65573 Genevestigator:O65573
            Uniprot:O65573
        Length = 519

 Score = 142 (55.0 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 33/112 (29%), Positives = 62/112 (55%)

Query:    40 LNLQGHFFRQKASEADRKSAEKLVKTRNN---EVMTLDWHSIEPKEVVCLLRVHLTSLSG 96
             L+ +G    ++A  AD ++++ +   RN     V+T+D H    K  + LL++HL   S 
Sbjct:   392 LSDKGRVASKQAQRADERASQDIFVARNKGIENVVTIDLHGQHVKPAMKLLKLHLLFGSY 451

Query:    97 IPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVD 148
             +P+I+ LR++ G       K   K+ + KLL++E + + E+  G  +LI++D
Sbjct:   452 VPSIQTLRVITGCGASGFGKSKVKQSVVKLLEREGVRYCEENRG-TLLIKLD 502


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 22  0.46    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.76u 0.06s 19.82t   Elapsed:  00:00:01
  Total cpu time:  19.76u 0.06s 19.82t   Elapsed:  00:00:01
  Start:  Fri May 10 11:31:55 2013   End:  Fri May 10 11:31:56 2013

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