BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040282
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q74ZM9|LEUC_ASHGO 3-isopropylmalate dehydratase OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=LEU1 PE=3
SV=2
Length = 776
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 98 PTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPK 153
PT+K +V G+ KK+A+ + K+ + EW E G + + D++ PK
Sbjct: 379 PTVKRAMVVPGSGL--VKKQAEAEGLDKIFEAAGFEWREAGCSMCLGMNPDILGPK 432
>sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana
GN=At3g53760 PE=2 SV=2
Length = 745
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 26 VYYSIIACSSFLILLNLQGHFF--RQKASEADRKSA-----EKLVKTRNNEVMTLDWHS 77
+Y + A + IL + G FF RQ + D +S+ EKL +T +E DWHS
Sbjct: 211 MYNQLAAWMVYGILQDPHGEFFIKRQDDGDLDHRSSQEEVSEKLARTSVHETSLTDWHS 269
>sp|O42911|RT25_SCHPO 37S ribosomal protein S25, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rsm25 PE=3 SV=1
Length = 220
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 98 PTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137
PT ++ R +V D + K KR+ K + + + I+W ED
Sbjct: 36 PTFQYARRIVPLYDPNKVKSRGKRLRKSMYQPQEIQWPED 75
>sp|A2AF47|DOC11_MOUSE Dedicator of cytokinesis protein 11 OS=Mus musculus GN=Dock11 PE=1
SV=1
Length = 2073
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 47 FRQKASEADRKSA----EKLVKTRNNE-VMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIK 101
RQ SEA R S KLV+ + E V+T I + LL + +S +
Sbjct: 20 LRQSVSEAVRGSVVLEKAKLVEPLDYENVITQRKTQIYSDPLRDLLMFPMEDISISVIGR 79
Query: 102 HLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEW------TEDGNGQAILIQVDVIDPKRL 155
R V T ED++K AQ +K+ +K S +W ED +G ++ + P+++
Sbjct: 80 QRRTVQSTVPEDAEKRAQSLFVKECIKTYSTDWHVVNYKYEDFSGDFRMLPCKSLRPEKI 139
>sp|Q6MUG5|SYS_MYCMS Serine--tRNA ligase OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=serS PE=3 SV=1
Length = 422
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 49 QKASEADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVG 108
+K +AD+ AE V + N +++ LD +E+ + L LS IP + H I G
Sbjct: 68 KKNEQADKAKAE--VVSLNEQIIKLD------EELRIVNDQILEKLSYIPNLSHKDIYFG 119
Query: 109 TSDEDSKKEAQKRMIKKLLKKESIEW 134
SDED+ E +K LL + W
Sbjct: 120 KSDEDN-VEIRKTKHNPLLTHSTPHW 144
>sp|B7I4E1|LEUC_ACIB5 3-isopropylmalate dehydratase large subunit OS=Acinetobacter
baumannii (strain AB0057) GN=leuC PE=3 SV=1
Length = 472
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 98 PTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDP 152
P+IK IV G+ K++A+K + K+ + EW E G + + D + P
Sbjct: 375 PSIKQAMIVPGSGL--VKQQAEKEGLDKIFLEAGFEWREPGCSMCLAMNADKLQP 427
>sp|B2I359|LEUC_ACIBC 3-isopropylmalate dehydratase large subunit OS=Acinetobacter
baumannii (strain ACICU) GN=leuC PE=3 SV=1
Length = 472
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 98 PTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDP 152
P+IK IV G+ K++A+K + K+ + EW E G + + D + P
Sbjct: 375 PSIKQAMIVPGSGL--VKQQAEKEGLDKIFLEAGFEWREPGCSMCLAMNADKLQP 427
>sp|A3M1S8|LEUC_ACIBT 3-isopropylmalate dehydratase large subunit OS=Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755) GN=leuC PE=3
SV=2
Length = 472
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 98 PTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDP 152
P+IK IV G+ K++A+K + K+ + EW E G + + D + P
Sbjct: 375 PSIKQAMIVPGSGL--VKQQAEKEGLDKIFLEAGFEWREPGCSMCLAMNADKLQP 427
>sp|B7H0T7|LEUC_ACIB3 3-isopropylmalate dehydratase large subunit OS=Acinetobacter
baumannii (strain AB307-0294) GN=leuC PE=3 SV=1
Length = 472
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 98 PTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDP 152
P+IK IV G+ K++A+K + K+ + EW E G + + D + P
Sbjct: 375 PSIKQAMIVPGSGL--VKQQAEKEGLDKIFLEAGFEWREPGCSMCLAMNADKLQP 427
>sp|A7NJH2|LEUC_ROSCS 3-isopropylmalate dehydratase large subunit OS=Roseiflexus
castenholzii (strain DSM 13941 / HLO8) GN=leuC PE=3 SV=1
Length = 472
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 87 LRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQ 146
LR+ + L G + +R++V + KK+A+ + ++ ++ EW E G + +
Sbjct: 360 LRMAASVLKGRKIAEGVRMMVVPGSQQVKKQAEAEGLDRIFREAGAEWREAGCSACLGMN 419
Query: 147 VDVIDPKRLS 156
D + P + +
Sbjct: 420 DDKVPPGKYA 429
>sp|Q5JSL3|DOC11_HUMAN Dedicator of cytokinesis protein 11 OS=Homo sapiens GN=DOCK11 PE=1
SV=2
Length = 2073
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 47 FRQKASEADRKSAEKLVKTRNNEVMTLDWHSI----------EPKEVVCLLRVHLTSLSG 96
RQ SEA R S +V + V LD+ ++ +P + + + S+S
Sbjct: 20 LRQSVSEAVRGS---VVLEKAKVVEPLDYENVIAQRKTQIYSDPLRDLLMFPMEDISISV 76
Query: 97 IPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEW------TEDGNGQAILIQVDVI 150
I + R V T ED++K AQ +K+ +K S +W ED +G ++ +
Sbjct: 77 IG--RQRRTVQSTVPEDAEKRAQSLFVKECIKTYSTDWHVVNYKYEDFSGDFRMLPCKSL 134
Query: 151 DPKRL 155
P+++
Sbjct: 135 RPEKI 139
>sp|Q54WA3|PEX7_DICDI Peroxisomal targeting signal 2 receptor OS=Dictyostelium discoideum
GN=pex7 PE=3 SV=1
Length = 316
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 17 EVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNNEVMTLDWH 76
+ F +H + +Y +I + + + ++ G + D +S +K ++E++T DW+
Sbjct: 141 KTFREHRYCIYSAIWSPRNAHLFASVSGDRTLKIWDSRDNRSL-NTIKAHDHEILTCDWN 199
Query: 77 SIEPKEVV 84
KEVV
Sbjct: 200 KYNDKEVV 207
>sp|Q6CT61|LYS4_KLULA Homoaconitase, mitochondrial OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=LYS4 PE=3 SV=1
Length = 693
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 46 FFRQKASEADRKSAEKLVK------TRNNEVMTLDWHSIEPKEVVCLLRVHLTSLS---- 95
F +A A + EK+V+ V++ D+ SI+P + +L
Sbjct: 10 FSTSRALYAGQNMTEKIVQRHAVGLPEGKTVVSGDYVSIKPAHCMSHDNSWPVALKFMGL 69
Query: 96 GIPTIKHLRIVVGTSDEDSKKEAQKRM-----IKKLLKKESIEWTEDGNG 140
G TIK+ R VV T D D + +++K + I+ KK I++ G G
Sbjct: 70 GASTIKNPRQVVNTLDHDVQNKSEKNLTKYKNIENFAKKHGIDFYPAGRG 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,232,992
Number of Sequences: 539616
Number of extensions: 1975361
Number of successful extensions: 7014
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7000
Number of HSP's gapped (non-prelim): 29
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)