Query 040282
Match_columns 161
No_of_seqs 104 out of 144
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkc_A NEDD4-binding protein 2 100.0 9.1E-30 3.1E-34 195.2 6.9 114 33-147 13-134 (135)
2 3fau_A NEDD4-binding protein 2 99.8 7.6E-20 2.6E-24 128.6 6.9 75 72-148 2-82 (82)
3 2d9i_A NEDD4-binding protein 2 99.8 9.5E-19 3.3E-23 126.2 7.8 81 71-152 9-94 (96)
4 3qd7_X Uncharacterized protein 99.3 4.7E-12 1.6E-16 97.6 7.9 80 71-151 48-134 (137)
5 2zqe_A MUTS2 protein; alpha/be 99.1 2.9E-10 9.8E-15 80.6 8.0 72 71-148 5-82 (83)
6 3lvj_C Sulfurtransferase TUSA; 85.5 5.6 0.00019 26.9 8.0 68 71-148 11-79 (82)
7 3hz7_A Uncharacterized protein 80.4 6.8 0.00023 27.0 6.8 74 72-154 3-77 (87)
8 1jdq_A TM006 protein, hypothet 71.4 23 0.00078 24.9 7.7 67 71-147 27-95 (98)
9 2fi9_A Outer membrane protein; 57.9 9.4 0.00032 28.1 3.6 31 104-137 71-101 (128)
10 2hql_A Hypothetical protein Mg 52.1 11 0.00036 27.6 2.9 26 17-42 37-62 (110)
11 3cpk_A Uncharacterized protein 49.9 13 0.00044 28.7 3.3 32 102-136 89-120 (150)
12 2gm2_A Conserved hypothetical 49.1 13 0.00046 27.5 3.2 31 104-137 67-97 (132)
13 1je3_A EC005, hypothetical 8.6 46.7 21 0.0007 25.2 3.7 67 71-147 28-95 (97)
14 2ab1_A Hypothetical protein; H 44.3 25 0.00086 25.7 4.0 32 104-137 64-95 (122)
15 2fvt_A Conserved hypothetical 43.4 24 0.00082 26.3 3.8 31 104-137 70-100 (135)
16 1sei_A Ribosomal protein S8; p 42.9 36 0.0012 25.3 4.7 33 117-149 29-65 (130)
17 3ups_A Iojap-like protein; PSI 42.3 61 0.0021 24.3 6.0 77 53-149 21-100 (136)
18 2kw7_A Conserved domain protei 42.1 61 0.0021 23.8 5.9 71 70-145 19-89 (157)
19 1pav_A Hypothetical protein TA 37.0 11 0.00037 24.8 0.9 67 71-147 7-74 (78)
20 2wzn_A TET3, 354AA long hypoth 34.0 46 0.0016 25.1 4.1 35 118-153 31-65 (354)
21 3s5p_A Ribose 5-phosphate isom 33.8 33 0.0011 26.9 3.3 38 97-137 16-53 (166)
22 1s03_H 30S ribosomal protein S 32.9 70 0.0024 23.6 4.9 33 117-149 29-64 (129)
23 2lq0_A De novo designed antifr 32.3 21 0.00072 19.8 1.4 12 5-16 8-19 (26)
24 2f9z_C Protein (chemotaxis met 28.1 2E+02 0.0068 21.9 7.3 58 75-134 58-121 (159)
25 1yj7_A ESCJ; mixed alpha/beta, 25.0 75 0.0026 24.4 4.0 30 121-150 15-47 (171)
26 2o5a_A BH1328 protein; BHR21, 23.2 84 0.0029 23.2 3.8 74 56-149 8-84 (125)
27 3ph3_A Ribose-5-phosphate isom 23.0 45 0.0015 26.2 2.4 35 100-137 18-52 (169)
28 2id1_A Hypothetical protein; a 22.7 75 0.0026 23.7 3.5 75 56-150 8-85 (130)
29 3c8l_A FTSZ-like protein of un 20.9 39 0.0013 25.3 1.6 22 71-92 13-35 (122)
30 1ng7_A Poliovirus 3A-N, genome 20.7 38 0.0013 22.5 1.3 14 121-134 32-45 (60)
31 3u5c_W 40S ribosomal protein S 20.6 1E+02 0.0035 22.7 3.8 34 116-149 30-67 (130)
32 2vpu_A TET3, 354AA long hypoth 20.5 97 0.0033 26.1 4.1 34 118-152 31-64 (354)
33 4em8_A Ribose 5-phosphate isom 20.2 94 0.0032 23.7 3.6 35 100-137 5-39 (148)
No 1
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.96 E-value=9.1e-30 Score=195.20 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=85.8
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhCCCc---ceeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEE
Q 040282 33 CSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNNEV---MTLDWHSIEPKEVVCLLRVHLTSLSG----IPTIKHLRI 105 (161)
Q Consensus 33 ~~s~A~~LSeqGk~~~~ka~ean~kAa~~IF~~rN~~~---~~IDLHGLhVkEAi~iLk~~L~~l~~----~~s~~~L~V 105 (161)
.++.|++||+|||.|+++|+++|++||++||+++|.+. .+|||||++|+||+..|+..|..+.. ......++|
T Consensus 13 ~~~~A~~~s~~g~~~~~~~~~~~~~Aa~~If~~~N~~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~I 92 (135)
T 2vkc_A 13 HMLVPRGSLQQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSV 92 (135)
T ss_dssp ------------------CCSHHHHHHHHHHHHHHHHHGGGTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 47899999999999999999999999999999999852 89999999999999999999987631 122468999
Q ss_pred EEeeCCCCCcc-ccchHHHHHHHHhCCCcEEecCCCeEEEEEE
Q 040282 106 VVGTSDEDSKK-EAQKRMIKKLLKKESIEWTEDGNGQAILIQV 147 (161)
Q Consensus 106 ItG~G~HS~g~-~kiKpaV~klL~e~gi~~~e~~n~G~IlI~L 147 (161)
|||+|+||.+. +++||+|.++|++.+++|.|. ++|+++|.|
T Consensus 93 IhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~-g~G~~~V~L 134 (135)
T 2vkc_A 93 ITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKVML 134 (135)
T ss_dssp ECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEEC-STTEEEEEC
T ss_pred EECCCcCCCCCCchHHHHHHHHHhcCCCceeeC-CCCeEEEEe
Confidence 99999999764 899999999999999999887 999999987
No 2
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.80 E-value=7.6e-20 Score=128.60 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=59.7
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhcC-----CCCcceEEEEEeeCCCCCc-cccchHHHHHHHHhCCCcEEecCCCeEEEE
Q 040282 72 TLDWHSIEPKEVVCLLRVHLTSLSG-----IPTIKHLRIVVGTSDEDSK-KEAQKRMIKKLLKKESIEWTEDGNGQAILI 145 (161)
Q Consensus 72 ~IDLHGLhVkEAi~iLk~~L~~l~~-----~~s~~~L~VItG~G~HS~g-~~kiKpaV~klL~e~gi~~~e~~n~G~IlI 145 (161)
+|||||++|+||+..|++.|..+.. .+ ...+.||+|+|+||.+ .+++||+|.++|++++++|.+. |+|++.|
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g-~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~-n~G~l~V 79 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKV 79 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCC---------CHHHHHHHHHHHTTCCEEEE-ETTEEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCC-ceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceeeC-CCEEEEE
Confidence 7999999999999999999987643 23 4689999999999975 5789999999999999999887 9999999
Q ss_pred EEc
Q 040282 146 QVD 148 (161)
Q Consensus 146 ~L~ 148 (161)
.|.
T Consensus 80 ~l~ 82 (82)
T 3fau_A 80 MLK 82 (82)
T ss_dssp EC-
T ss_pred EeC
Confidence 873
No 3
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.76 E-value=9.5e-19 Score=126.18 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=70.4
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEEEEeeCCCCCc-cccchHHHHHHHHhCCCcEEecCCCeEEEE
Q 040282 71 MTLDWHSIEPKEVVCLLRVHLTSLSG----IPTIKHLRIVVGTSDEDSK-KEAQKRMIKKLLKKESIEWTEDGNGQAILI 145 (161)
Q Consensus 71 ~~IDLHGLhVkEAi~iLk~~L~~l~~----~~s~~~L~VItG~G~HS~g-~~kiKpaV~klL~e~gi~~~e~~n~G~IlI 145 (161)
.+|||||++|+||++.|++.|..+.. ......++||+|+|+||.+ .+++||+|.++|++++++|.|. ++|+++|
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~eg-g~Ga~~V 87 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKV 87 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECC-STTCEEE
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccccC-CCcEEEE
Confidence 89999999999999999999987641 1224689999999999976 4899999999999999999776 9999999
Q ss_pred EEcccCC
Q 040282 146 QVDVIDP 152 (161)
Q Consensus 146 ~L~~~~~ 152 (161)
.|....+
T Consensus 88 ~L~~~~~ 94 (96)
T 2d9i_A 88 MLKSGPS 94 (96)
T ss_dssp ECCCCCC
T ss_pred EEccCCC
Confidence 9986544
No 4
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=99.31 E-value=4.7e-12 Score=97.63 Aligned_cols=80 Identities=9% Similarity=0.110 Sum_probs=67.8
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCc-cccchHHHHHHHHhCCC--cEEecC----CCeEE
Q 040282 71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSK-KEAQKRMIKKLLKKESI--EWTEDG----NGQAI 143 (161)
Q Consensus 71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g-~~kiKpaV~klL~e~gi--~~~e~~----n~G~I 143 (161)
.+|||||+.++||...|...|..+...+ ...+.||+|+|.||.+ .+.+|++|.++|.+... .|...+ +.|++
T Consensus 48 ~~LDLHG~~~~EA~~~L~~fL~~a~~~g-~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat 126 (137)
T 3qd7_X 48 ASLNLLRQPVEECRKMVFSFIQQALADG-LRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGAC 126 (137)
T ss_dssp GEEECTTCCHHHHHHHHHHHHHHHHHTT-CSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEE
T ss_pred eEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEE
Confidence 8999999999999999999999887555 4789999999999976 46899999999999886 466532 89999
Q ss_pred EEEEcccC
Q 040282 144 LIQVDVID 151 (161)
Q Consensus 144 lI~L~~~~ 151 (161)
+|.|...+
T Consensus 127 ~V~Lr~~~ 134 (137)
T 3qd7_X 127 YVALRKTA 134 (137)
T ss_dssp EEEECC--
T ss_pred EEEEEchh
Confidence 99997543
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=99.10 E-value=2.9e-10 Score=80.60 Aligned_cols=72 Identities=13% Similarity=0.282 Sum_probs=61.7
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCC--cEEecC----CCeEEE
Q 040282 71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESI--EWTEDG----NGQAIL 144 (161)
Q Consensus 71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi--~~~e~~----n~G~Il 144 (161)
.+|||||+.++||...|+..|..+...+ ...+.||.|+|+ +.+|++|.++|.+... .|...+ ..|..+
T Consensus 5 ~~lDLhG~~~~eA~~~l~~fl~~a~~~g-~~~v~IIHGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~ 78 (83)
T 2zqe_A 5 KEVDLRGLTVAEALLEVDQALEEARALG-LSTLRLLHGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGHGVTV 78 (83)
T ss_dssp CEEECTTCCHHHHHHHHHHHHHHHHHTT-CSEEEEECCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEE
T ss_pred cEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEE
Confidence 7899999999999999999999887555 479999999997 5799999999999875 466543 479999
Q ss_pred EEEc
Q 040282 145 IQVD 148 (161)
Q Consensus 145 I~L~ 148 (161)
|.|.
T Consensus 79 V~Lk 82 (83)
T 2zqe_A 79 VALR 82 (83)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9874
No 6
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=85.54 E-value=5.6 Score=26.87 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=50.8
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecC-CCeEEEEEEc
Q 040282 71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDG-NGQAILIQVD 148 (161)
Q Consensus 71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~-n~G~IlI~L~ 148 (161)
.+||+-|+.==+-+-.+++.|..+.. .+.|.|++-.. . -+.-|..||++.|+++...+ ..|.+.|.+.
T Consensus 11 ~~lD~rGl~CP~Pvl~~kkal~~l~~---G~~l~V~~dd~-----~--a~~di~~~~~~~G~~~~~~~~~~~~~~i~I~ 79 (82)
T 3lvj_C 11 HTLDALGLRCPEPVMMVRKTVRNMQP---GETLLIIADDP-----A--TTRDIPGFCTFMEHELVAKETDGLPYRYLIR 79 (82)
T ss_dssp EEEECTTCCTTHHHHHHHHHHHTSCT---TCEEEEEECCT-----T--HHHHHHHHHHHTTCEEEEEECSSSSEEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHhCCC---CCEEEEEECCc-----c--HHHHHHHHHHHCCCEEEEEEecCCEEEEEEE
Confidence 78999999988888889999887742 36899987321 1 24568899999999986653 6676666553
No 7
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=80.43 E-value=6.8 Score=26.98 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=52.8
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecC-CCeEEEEEEccc
Q 040282 72 TLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDG-NGQAILIQVDVI 150 (161)
Q Consensus 72 ~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~-n~G~IlI~L~~~ 150 (161)
+||+-|+-==.-+-.+++.|..+... ...|.|++.. . .-..-|..||++.|+++...+ ..|.+.|.+...
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~~~--G~~L~V~~dd-----~--~a~~dI~~~~~~~G~~v~~~~~~~g~~~i~I~Kg 73 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELGEA--GGVVTVLVDN-----D--ISRQNLQKMAEGMGYQSEYLEKDNGVIEVTIVAG 73 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTGGG--CCEEEEEESS-----H--HHHHHHHHHHHHHTCEEEEEECGGGCEEEEEESC
T ss_pred EEEcCCCCCCHHHHHHHHHHHhccCC--CCEEEEEECC-----c--cHHHHHHHHHHHCCCEEEEEEecCCEEEEEEEEC
Confidence 69999998888888888888877411 2589998721 1 123468899999999986654 788888888766
Q ss_pred CCCc
Q 040282 151 DPKR 154 (161)
Q Consensus 151 ~~~~ 154 (161)
.++-
T Consensus 74 ~~~~ 77 (87)
T 3hz7_A 74 EGCA 77 (87)
T ss_dssp C---
T ss_pred CCce
Confidence 5544
No 8
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=71.37 E-value=23 Score=24.88 Aligned_cols=67 Identities=18% Similarity=0.009 Sum_probs=49.2
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecC-C-CeEEEEEE
Q 040282 71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDG-N-GQAILIQV 147 (161)
Q Consensus 71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~-n-~G~IlI~L 147 (161)
.+||+-|+.==+-+-.+++.|..+.. .+.|.|++-.. .-..-|.+||++.|+++...+ . .|.+.|.+
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---Ge~L~Vl~dd~-------~a~~dI~~~~~~~G~~v~~~e~~~~g~~~i~I 95 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKP---GEILEVWIDYP-------MSKERIPETVKKLGHEVLEIEEVGPSEWKIYI 95 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCT---TCEEEEEESSC-------THHHHHHHHHHHSSCCEEEEEECSSSCEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCC---CCEEEEEECCc-------cHHHHHHHHHHHCCCEEEEEEEecCCEEEEEE
Confidence 46999999988888888888888752 36799986321 124568899999999986654 4 57665554
No 9
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=57.91 E-value=9.4 Score=28.09 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=25.3
Q ss_pred EEEEeeCCCCCccccchHHHHHHHHhCCCcEEec
Q 040282 104 RIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137 (161)
Q Consensus 104 ~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~ 137 (161)
-+|+|+|.. ...+.|++.++|++.||..+.-
T Consensus 71 vliiGtG~~---~~~l~p~~~~~l~~~GI~vE~m 101 (128)
T 2fi9_A 71 VLLIGTGVE---LLRLPEELRVLLWEKRISSDTM 101 (128)
T ss_dssp EEEEECTTS---CCCCCHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCC---CCCCCHHHHHHHHHcCCEEEEe
Confidence 489999998 3457899999999999986543
No 10
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=52.11 E-value=11 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.6
Q ss_pred hhccCceeEEEEEeeeCchHHHHHHH
Q 040282 17 EVFSDHSFYVYYSIIACSSFLILLNL 42 (161)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~s~A~~LSe 42 (161)
..|...+|--||-|-+|+++|-+|-.
T Consensus 37 R~FGer~FTDyyViYAN~QL~~ELEk 62 (110)
T 2hql_A 37 RFFGERLFTDYYVIYANGQLAYELEK 62 (110)
T ss_dssp EEETTEEEEEEEEEEEEHHHHHHHHH
T ss_pred hhhccccceeEEEEEECCeeehhHHH
Confidence 46888899999999999999999853
No 11
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=49.93 E-value=13 Score=28.68 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=25.6
Q ss_pred eEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEe
Q 040282 102 HLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTE 136 (161)
Q Consensus 102 ~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e 136 (161)
.=-+|+|+|..-. .+.|++.+.|++.||..+.
T Consensus 89 pEvliiGTG~~~~---~l~p~~~~~L~~~GIgvE~ 120 (150)
T 3cpk_A 89 PEVLLVGTGRRQH---LLGPEQVRPLLAMGVGVEA 120 (150)
T ss_dssp CSEEEEECTTSCC---CCCHHHHHHHHTTTCEEEE
T ss_pred CCEEEEcCCCCCC---CCCHHHHHHHHHcCCEEEE
Confidence 3458999998754 5789999999999997654
No 12
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=49.11 E-value=13 Score=27.52 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=25.2
Q ss_pred EEEEeeCCCCCccccchHHHHHHHHhCCCcEEec
Q 040282 104 RIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137 (161)
Q Consensus 104 ~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~ 137 (161)
-||+|+|.... .+.|++.++|++.||..+.-
T Consensus 67 vliiGTG~~~~---~l~p~~~~~l~~~GI~vE~m 97 (132)
T 2gm2_A 67 VILLGTGERQQ---FPSTDVLAACLTRGIGLEAM 97 (132)
T ss_dssp EEEEECTTSCC---CCCHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCC---cCCHHHHHHHHHcCCEEEEe
Confidence 38999998754 57899999999999986543
No 13
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=46.69 E-value=21 Score=25.15 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=46.5
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEec-CCCeEEEEEE
Q 040282 71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED-GNGQAILIQV 147 (161)
Q Consensus 71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~-~n~G~IlI~L 147 (161)
.+||+-|+-==+-+-.+++.|..+.. .+.|.|++-.. + -..-|.+||++.|+++... +..|.+.|.+
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~~---Ge~L~Vl~dd~------~-a~~dIp~~~~~~G~~v~~~e~~~~~~~i~I 95 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLKK---GEILEVVSDCP------Q-SINNIPLDARNHGYTVLDIQQDGPTIRYLI 95 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCCS---SCEEEEEEBCS------S-SSCHHHHHHHHHTCSEEEEEECSSSEEEEE
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCCC---CCEEEEEECCc------c-hHHHHHHHHHHCCCEEEEEEeeCCEEEEEE
Confidence 57999999877777777888776642 36799987542 1 1234779999999998653 2566555544
No 14
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=44.30 E-value=25 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=25.3
Q ss_pred EEEEeeCCCCCccccchHHHHHHHHhCCCcEEec
Q 040282 104 RIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137 (161)
Q Consensus 104 ~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~ 137 (161)
-+|+|+|....= ++.|.+.++|++.||..+.-
T Consensus 64 vliiGtG~~~~~--~~~~~~~~~l~~~gI~ve~m 95 (122)
T 2ab1_A 64 TLVIGRGMSEAL--KVPSSTVEYLKKHGIDVRVL 95 (122)
T ss_dssp EEEEEECSSCCS--CCCHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCcc--CCCHHHHHHHHHcCCEEEEe
Confidence 389999987532 47899999999999986543
No 15
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=43.40 E-value=24 Score=26.30 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=25.0
Q ss_pred EEEEeeCCCCCccccchHHHHHHHHhCCCcEEec
Q 040282 104 RIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137 (161)
Q Consensus 104 ~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~ 137 (161)
-||+|+|.... .+.|++.++|++.||..+.-
T Consensus 70 vliiGTG~~~~---~l~p~l~~~l~~~GI~vE~M 100 (135)
T 2fvt_A 70 TLIVGTGADVW---IAPRQLREALRGVNVVLDTM 100 (135)
T ss_dssp EEEEECTTSCC---CCCHHHHHHHHTTTCEEEEE
T ss_pred EEEEcCCCCCC---cCCHHHHHHHHHcCCEEEEe
Confidence 48999998754 36799999999999986543
No 16
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=42.87 E-value=36 Score=25.30 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHhCCC--cEE--ecCCCeEEEEEEcc
Q 040282 117 EAQKRMIKKLLKKESI--EWT--EDGNGQAILIQVDV 149 (161)
Q Consensus 117 ~kiKpaV~klL~e~gi--~~~--e~~n~G~IlI~L~~ 149 (161)
.+++.++.+.|.++|+ .|+ ++.+.|.|.|.|..
T Consensus 29 Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky 65 (130)
T 1sei_A 29 SKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKY 65 (130)
T ss_dssp CHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECB
T ss_pred cHHHHHHHHHHHHCCCceeEEEEecCCccEEEEEEec
Confidence 4678899999999999 565 33257899999987
No 17
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=42.28 E-value=61 Score=24.34 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhhCCCcceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCC
Q 040282 53 EADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESI 132 (161)
Q Consensus 53 ean~kAa~~IF~~rN~~~~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi 132 (161)
+.-+.+++.+-+.+-.+...|||.|+. .. ..+ .|+..|+.+.-..++-..|.+.|++.|+
T Consensus 21 ~l~~~i~~al~dkKa~DI~vlDv~~~s----------------~~--~Dy--fVIatg~S~rqv~Aiad~v~~~lk~~g~ 80 (136)
T 3ups_A 21 MLLKLVTDSLDDDQALEIATIPLAGKS----------------SI--ADY--MVIASGRSSRQVTAMAQKLADRIKAATG 80 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTTC----------------SS--CSE--EEEEECSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCC----------------cc--cCE--EEEEEcCCHHHHHHHHHHHHHHHHHcCC
Confidence 334444544444443355889988771 11 245 5666666544456677889999999887
Q ss_pred c--EEecC-CCeEEEEEEcc
Q 040282 133 E--WTEDG-NGQAILIQVDV 149 (161)
Q Consensus 133 ~--~~e~~-n~G~IlI~L~~ 149 (161)
. -.|.. ++.-++|++..
T Consensus 81 ~~~~~EG~~~~~WvLlD~Gd 100 (136)
T 3ups_A 81 YVSKIEGLPAADWVLLDAGD 100 (136)
T ss_dssp CCCEEESCSSCSEEEEECSS
T ss_pred ccCcccCCCCCCEEEEeCCC
Confidence 5 34443 66788888765
No 18
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=42.13 E-value=61 Score=23.84 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=49.2
Q ss_pred cceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecCCCeEEEE
Q 040282 70 VMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILI 145 (161)
Q Consensus 70 ~~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~n~G~IlI 145 (161)
....|.-|+-..+...-|...|..+....+ ..+.|+|=.... |. .+..--.++.++.|+-.++. |.|+|++
T Consensus 19 ~~V~D~a~~Ls~~~~~~L~~~l~~~e~~t~-~qi~Vv~v~~l~--g~-~~~~~A~~~f~~wgig~~~~-~nGvLl~ 89 (157)
T 2kw7_A 19 RLVTDEAGLLSNAQEEVMNGRLRAIRSSHA-VEFAVVTLPSIG--DA-PLEDFTLKLARQWGVGNEKN-NNGLLLV 89 (157)
T ss_dssp TCEEECSSCSCHHHHHHHHHHHHHHHHHTC-CEEEEEEESBCT--TC-CHHHHHHHHHHHHSTTTTSC-TTEEEEE
T ss_pred ceEEcccccCCHHHHHHHHHHHHHHHHhhC-CeEEEEEEcCCC--CC-CHHHHHHHHHHHhCCCCCCC-CCcEEEE
Confidence 378999999999999999999999876543 567766544332 21 23333446777777766665 7887765
No 19
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=37.05 E-value=11 Score=24.85 Aligned_cols=67 Identities=9% Similarity=-0.063 Sum_probs=46.2
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEec-CCCeEEEEEE
Q 040282 71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED-GNGQAILIQV 147 (161)
Q Consensus 71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~-~n~G~IlI~L 147 (161)
.+||+-|+.==+-+-.+++.|..+.. .+.|.|++-.. . -..-|.++|++.|+++... +..|.+.|.+
T Consensus 7 ~~lD~rGl~CP~Pvl~~k~al~~l~~---G~~L~V~~dd~-----~--a~~di~~~~~~~G~~~~~~~~~~~~~~i~I 74 (78)
T 1pav_A 7 RVIDARGSYCPGPLMELIKAYKQAKV---GEVISVYSTDA-----G--TKKDAPAWIQKSGQELVGVFDRNGYYEIVM 74 (78)
T ss_dssp CCCCBSSCSSCTTHHHHHHHHTTSCT---TCCEECCBSSS-----C--HHHHHHHHHHHHTEEECCCCCCSSCBCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHcCCC---CCEEEEEECCc-----c--HHHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence 57999999887777788888887642 35788875321 1 2456889999999998653 2556444433
No 20
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=33.96 E-value=46 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=28.5
Q ss_pred cchHHHHHHHHhCCCcEEecCCCeEEEEEEcccCCC
Q 040282 118 AQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPK 153 (161)
Q Consensus 118 kiKpaV~klL~e~gi~~~e~~n~G~IlI~L~~~~~~ 153 (161)
.+..-+.++|++.|++.+.+ +.|-++.++.+..|+
T Consensus 31 ~v~~~l~~~l~~~G~~v~~D-~~GNlia~~~g~~p~ 65 (354)
T 2wzn_A 31 GIRDIVVDVLKEVADEVKVD-KLGNVIAHFKGSSPR 65 (354)
T ss_dssp THHHHHHHHHHTTSSEEEEC-TTCCEEEEECCSSSE
T ss_pred HHHHHHHHHHHHcCCEEEEe-CCCeEEEEECCCCce
Confidence 46677999999999988777 678888999887663
No 21
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=33.80 E-value=33 Score=26.89 Aligned_cols=38 Identities=3% Similarity=0.059 Sum_probs=27.9
Q ss_pred CCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEec
Q 040282 97 IPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137 (161)
Q Consensus 97 ~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~ 137 (161)
.|++..++|.+|.++- .-.+|..|+++|++.|+...+-
T Consensus 16 ~~~~~~MkIaIgsDha---G~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 16 TQGPGSMKVAFASDHG---GRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp ---CTTCEEEEEECGG---GHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCceEEEEEECch---HHHHHHHHHHHHHHCCCEEEEc
Confidence 3444568999998642 3358999999999999987765
No 22
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=32.89 E-value=70 Score=23.63 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHhCCC--cEE-ecCCCeEEEEEEcc
Q 040282 117 EAQKRMIKKLLKKESI--EWT-EDGNGQAILIQVDV 149 (161)
Q Consensus 117 ~kiKpaV~klL~e~gi--~~~-e~~n~G~IlI~L~~ 149 (161)
.+++.++.+.|.++|+ .|+ ++...|.|.|.|..
T Consensus 29 Sk~~~~il~iL~~eGyI~~~~~~~~~~~~i~v~Lky 64 (129)
T 1s03_H 29 SKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKY 64 (129)
T ss_dssp CHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEECB
T ss_pred cHHHHHHHHHHHHCCcceeEEEcCCCceEEEEEEec
Confidence 4678899999999999 576 33357899999988
No 23
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=32.32 E-value=21 Score=19.80 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=10.2
Q ss_pred hhhHHHHHhhhh
Q 040282 5 LVTSFIMRVAYS 16 (161)
Q Consensus 5 ~~~~~~~~~~~~ 16 (161)
|..|||.|.|+.
T Consensus 8 laasfivrcafe 19 (26)
T 2lq0_A 8 LAASFIVRCAFE 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 678999999984
No 24
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=28.08 E-value=2e+02 Score=21.91 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=40.7
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCcceEEE-EEeeCCCC----Cccccch-HHHHHHHHhCCCcE
Q 040282 75 WHSIEPKEVVCLLRVHLTSLSGIPTIKHLRI-VVGTSDED----SKKEAQK-RMIKKLLKKESIEW 134 (161)
Q Consensus 75 LHGLhVkEAi~iLk~~L~~l~~~~s~~~L~V-ItG~G~HS----~g~~kiK-paV~klL~e~gi~~ 134 (161)
.-+-|++.||++|=+.|......+ +.|++ |.|=++-- ...+.+. .+|+++|+++||+-
T Consensus 58 ~~~rY~d~am~~Li~~m~~~Ga~~--~~L~aKifGGA~m~~~~~~~IG~rNv~~a~~~L~~~gI~i 121 (159)
T 2f9z_C 58 KPGKYADTAVKTLVEELKKMGAKV--ERLEAKIAGGASMFESKGMNIGARNVEAVKKHLKDFGIKL 121 (159)
T ss_dssp CGGGBHHHHHHHHHHHHHTTTCCG--GGCEEEEEECCCCSCCCSSCHHHHHHHHHHHHHHHTTCCE
T ss_pred CcccCHHHHHHHHHHHHHHcCCCH--HHEEEEEEeCcccCcccccChHHHHHHHHHHHHHHCCCcE
Confidence 446799999999999999887765 35553 44433321 1234443 48999999999984
No 25
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=25.00 E-value=75 Score=24.40 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCC--cEEecCCCe-EEEEEEccc
Q 040282 121 RMIKKLLKKESI--EWTEDGNGQ-AILIQVDVI 150 (161)
Q Consensus 121 paV~klL~e~gi--~~~e~~n~G-~IlI~L~~~ 150 (161)
-.|...|+++|| .|.-++++| +|+|.=+..
T Consensus 15 ~~i~~~L~~~gI~~~y~~~~~g~~~I~Vp~~~~ 47 (171)
T 1yj7_A 15 NQMQALLLSNDVNVSKEMDKSGNMTLSVAAADF 47 (171)
T ss_dssp HHHHHHHHHTTCCCEEEECTTSCEEEEEEGGGH
T ss_pred HHHHHHHHHcCCCCceEECCCCCEEEEeCHHHH
Confidence 468899999999 798875666 788875543
No 26
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=23.15 E-value=84 Score=23.18 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhCCCcceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcE-
Q 040282 56 RKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEW- 134 (161)
Q Consensus 56 ~kAa~~IF~~rN~~~~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~- 134 (161)
+.+++.+-+.+-.|...||+-|+. .. ..+ .|+.+|+.+.-..++-..|.+.|++.|.+.
T Consensus 8 ~~i~~al~dkKa~DI~vlDv~~~s----------------~~--~Dy--fVIatg~S~rqv~Aiad~v~~~lk~~g~~~~ 67 (125)
T 2o5a_A 8 QLAVNAVDDKKAEQVVALNMKGIS----------------LI--ADF--FLICHGNSEKQVQAIAHELKKVAQEQGIEIK 67 (125)
T ss_dssp HHHHHHHHHTTCEEEEEEECBTTB----------------C----CE--EEEEEESSHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCeEEEEcCCCC----------------cc--cCE--EEEEEcCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 334434433444455888988763 11 134 566666665556677888999999999863
Q ss_pred -EecC-CCeEEEEEEcc
Q 040282 135 -TEDG-NGQAILIQVDV 149 (161)
Q Consensus 135 -~e~~-n~G~IlI~L~~ 149 (161)
.|.. ++.-+++++..
T Consensus 68 ~~EG~~~~~WvLlD~Gd 84 (125)
T 2o5a_A 68 RLEGYEQARWVLIDLGD 84 (125)
T ss_dssp EEESTTTTSEEEEECSS
T ss_pred cccCCCCCCEEEEeCCC
Confidence 3443 66688888765
No 27
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=23.00 E-value=45 Score=26.16 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=26.0
Q ss_pred cceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEec
Q 040282 100 IKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137 (161)
Q Consensus 100 ~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~ 137 (161)
...++|.+|.++- .-.+|..|+++|++.|+...+.
T Consensus 18 ~~~MkIaIgsDha---G~~lK~~i~~~L~~~G~eV~D~ 52 (169)
T 3ph3_A 18 GSHMKIGIGSDHG---GYNLKREIADFLKKRGYEVIDF 52 (169)
T ss_dssp ---CEEEEEECGG---GHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEEEeCch---HHHHHHHHHHHHHHCCCEEEEc
Confidence 3568899997643 2348999999999999988775
No 28
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=22.72 E-value=75 Score=23.67 Aligned_cols=75 Identities=17% Similarity=0.385 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhCCCcceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcE-
Q 040282 56 RKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEW- 134 (161)
Q Consensus 56 ~kAa~~IF~~rN~~~~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~- 134 (161)
+.+++.+-+.+-.|...||+.|+. .. ..+ .|+.+|+.+.-..++-..|.+.|++.|++.
T Consensus 8 ~~i~~al~dkKa~DI~vlDv~~~s----------------~~--~Dy--fVIaTg~S~rqv~Aiad~v~~~lk~~g~~~~ 67 (130)
T 2id1_A 8 KLAIEALEDIKGKDIIELDTSKLT----------------SL--FQR--MIVATGDSNRQVKALANSVQVKLKEAGVDIV 67 (130)
T ss_dssp HHHHHHHHHTTCEEEEEEEGGGTC----------------SS--CSE--EEEEECSSHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCeEEEEcCCCC----------------cc--cCE--EEEEEcCCHHHHHHHHHHHHHHHHHcCCcCc
Confidence 344444444444455889988763 11 244 666777665556677888999999999863
Q ss_pred -EecC-CCeEEEEEEccc
Q 040282 135 -TEDG-NGQAILIQVDVI 150 (161)
Q Consensus 135 -~e~~-n~G~IlI~L~~~ 150 (161)
.|.. ++.-++|++.++
T Consensus 68 ~~EG~~~~~WvLlD~GdV 85 (130)
T 2id1_A 68 GSEGHESGEWVLVDAGDV 85 (130)
T ss_dssp BCCSTTTSSEEEEEETTE
T ss_pred cccCCCCCCEEEEecCCE
Confidence 3332 666888888653
No 29
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=20.87 E-value=39 Score=25.29 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=15.7
Q ss_pred ceeecCCCCHHHH-HHHHHHHHH
Q 040282 71 MTLDWHSIEPKEV-VCLLRVHLT 92 (161)
Q Consensus 71 ~~IDLHGLhVkEA-i~iLk~~L~ 92 (161)
+=.||||+.+..| .+-++.-|.
T Consensus 13 mG~DlhGqD~TkAA~RAvrDAI~ 35 (122)
T 3c8l_A 13 MGIDQHGQEPTIAASRAVRNAIA 35 (122)
T ss_dssp EEEESSSSCHHHHHHHHHHHHHT
T ss_pred ccccccCccHHHHHHHHHHHHHh
Confidence 5579999987665 566666555
No 30
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=20.73 E-value=38 Score=22.51 Aligned_cols=14 Identities=7% Similarity=0.079 Sum_probs=11.7
Q ss_pred HHHHHHHHhCCCcE
Q 040282 121 RMIKKLLKKESIEW 134 (161)
Q Consensus 121 paV~klL~e~gi~~ 134 (161)
|.|.+||+++||--
T Consensus 32 ~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 32 QEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcee
Confidence 78999999998853
No 31
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=20.64 E-value=1e+02 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.9
Q ss_pred cccchHHHHHHHHhCCC--cEEe--cCCCeEEEEEEcc
Q 040282 116 KEAQKRMIKKLLKKESI--EWTE--DGNGQAILIQVDV 149 (161)
Q Consensus 116 ~~kiKpaV~klL~e~gi--~~~e--~~n~G~IlI~L~~ 149 (161)
..|++.++.+.|.++|+ .|+. +.+.|.|.|.|.+
T Consensus 30 ~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~ 67 (130)
T 3u5c_W 30 SSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNG 67 (130)
T ss_dssp CCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCS
T ss_pred CCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEcc
Confidence 35678899999999999 5644 3378999999975
No 32
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=20.52 E-value=97 Score=26.07 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=27.5
Q ss_pred cchHHHHHHHHhCCCcEEecCCCeEEEEEEcccCC
Q 040282 118 AQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDP 152 (161)
Q Consensus 118 kiKpaV~klL~e~gi~~~e~~n~G~IlI~L~~~~~ 152 (161)
.+...++++|++.++.+..+ +-|.+++.+.+.+|
T Consensus 31 ~v~~~l~~~l~~~g~~~~~D-~~GNvi~~~~g~~~ 64 (354)
T 2vpu_A 31 GIRDIVVDVLKEVADEVKVD-KLGNVIAHFKGSSP 64 (354)
T ss_dssp THHHHHHHHHHTTCSEEEEC-TTCCEEEEECCSSS
T ss_pred HHHHHHHHHHHHhCCEEEEc-CCCeEEEEEcCCCC
Confidence 57788999999999987777 67888888876554
No 33
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=20.22 E-value=94 Score=23.74 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=26.3
Q ss_pred cceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEec
Q 040282 100 IKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTED 137 (161)
Q Consensus 100 ~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~ 137 (161)
..-.+|.+|.++- .-.+|..|+++|++.|+...+-
T Consensus 5 m~~mkI~igsDha---G~~lK~~i~~~L~~~G~eV~D~ 39 (148)
T 4em8_A 5 MVVKRVFLSSDHA---GVELRLFLSAYLRDLGCEVFDC 39 (148)
T ss_dssp CSCSEEEEEECGG---GHHHHHHHHHHHHHTTCEEEEC
T ss_pred ceeeEEEEEECch---hHHHHHHHHHHHHHCCCEEEEe
Confidence 3445788887642 3358999999999999988775
Done!