BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040285
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
SG +LPPGPTP PVIGN+L++G K KSL L+K++GP+ +L FG VV
Sbjct: 7 SGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAV 66
Query: 88 KEILQNQDTSFCNRTI 103
KE L + F R I
Sbjct: 67 KEALIDLGEEFSGRGI 82
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 28 KSGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAM 86
K+ S+ PPGPTP PVIGN+L++G K KSL L+K++GP+ +L FG VV
Sbjct: 4 KTSSKGRPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEA 63
Query: 87 AKEILQNQDTSFCNRTI 103
KE L + F R I
Sbjct: 64 VKEALIDLGEEFSGRGI 80
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
SG +LPPGPTP PVIGN+L++ K KSL L+KI+GP+ +L FG VV +
Sbjct: 7 SGRGKLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVV 66
Query: 88 KEILQNQDTSFCNR 101
KE L + F R
Sbjct: 67 KEALIDLGEEFSGR 80
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 34/280 (12%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP+P+IGN+L++ K KSL K ++ +GP+ ++ G TVV
Sbjct: 6 SSKGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAV 65
Query: 88 KEILQNQDTSFCNR-TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDAN 146
KE L + F R ++P I G+ + T W+ +R+ + R
Sbjct: 66 KEALVDLGEEFAGRGSVP--ILEKVSKGLGIAFSNAKT-WKEMRRFS---LMTLRNFGMG 119
Query: 147 QHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTL-------NLISNTIFS--IDLADP 197
+ +IQ+ + E R A + D T N+I + IF D D
Sbjct: 120 KRSIEDRIQEEARCLVEELRKTNA-----SPCDPTFILGCAPCNVICSVIFHNRFDYKDE 174
Query: 198 TSKTAREFKQTNWGMMEEAGKPNLSDF--FPVLENLDLQGIRRRMTVYFGKMLDVFDRLI 255
E N +E G P L + FP L + GI + + K D I
Sbjct: 175 EFLKLMESLHEN---VELLGTPWLQVYNNFPALLDY-FPGIHKTLL----KNADYIKNFI 226
Query: 256 DQRLKQRQE-RDFTESKDMLDA-LLKICEDKSVEIDINDI 293
+++K+ Q+ D +D +D L+K+ ++ ++E + +
Sbjct: 227 MEKVKEHQKLLDVNNPRDFIDCFLIKMEQENNLEFTLESL 266
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP P+IGN+L++ K KS +K++GP+ ++ FG VVF
Sbjct: 6 SSKGKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAV 65
Query: 88 KEILQNQDTSFCNR 101
KE L + F R
Sbjct: 66 KEALIDNGEEFSGR 79
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 121/287 (42%), Gaps = 40/287 (13%)
Query: 24 SRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSS 83
S+G K+ PPGP +P+IG++L LG PH +L+++++ +G ++ ++ G VV S
Sbjct: 7 SKGLKN-----PPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSG 61
Query: 84 AAMAKEILQNQDTSFCNRTIPD----AIYAHGHHEFGMPWLP-VATLWRNLRKICN---- 134
++ L Q F R PD + ++G M + P +W R++
Sbjct: 62 LDTIRQALVRQGDDFKGR--PDLYTFTLISNGQ---SMSFSPDSGPVWAARRRLAQNGLK 116
Query: 135 -----SHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTI 189
S SS +H+ K+ + L++ +QE + + + N+I
Sbjct: 117 SFSIASDPASSTSCYLEEHV-SKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAIC 175
Query: 190 FSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLE---NLDLQGIRRRMTVYFGK 246
F D + N E G N +DF P+L N L + ++
Sbjct: 176 FG-RRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSF 234
Query: 247 MLDVFDRLIDQRLKQRQERDFTES--KDMLDALLKICEDKSVEIDIN 291
M Q++ + + F + +D+ D+L++ C++K ++ + N
Sbjct: 235 M---------QKMVKEHYKTFEKGHIRDITDSLIEHCQEKQLDENAN 272
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 29 SGSRRLPPGPTPYPVIGNL--LELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAM 86
S +LPPGP P P+IGNL LEL + P KS +LA+ GP+ +L G VV
Sbjct: 6 SSKGKLPPGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKA 64
Query: 87 AKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKI 132
KE L + F R D H H + G+ + T W+++R+
Sbjct: 65 VKEALLDYKDEFSGRG--DLPAFHAHRDRGIIFNNGPT-WKDIRRF 107
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP P IGN L+L ++ + SL K+++ +GP+ ++ G VV
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 88 KEILQNQDTSFCNRTIP----------DAIYAHGHHEFGMPWLPVATLWRNLRKICNSHA 137
+E L +Q F R ++++G + +ATL
Sbjct: 66 REALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL------------ 113
Query: 138 FSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL---ISNTIFSIDL 194
R + ++IQ+ ++ + R G A D T L +SN I SI
Sbjct: 114 ---RDFGVGKRGIEERIQEEAGFLIDALRG-----TGGANIDPTFFLSRTVSNVISSIVF 165
Query: 195 ADPTSKTAREF 205
D +EF
Sbjct: 166 GDRFDYKDKEF 176
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP P IGN L+L ++ + SL K+++ +GP+ ++ G VV
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 88 KEILQNQDTSFCNRTIP----------DAIYAHGHHEFGMPWLPVATLWRNLRKICNSHA 137
+E L +Q F R ++++G + +ATL
Sbjct: 66 REALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL------------ 113
Query: 138 FSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL---ISNTIFSIDL 194
R + ++IQ+ ++ + R G A D T L +SN I SI
Sbjct: 114 ---RDFGVGKRGIEERIQEEAGFLIDALRG-----TGGANIDPTFFLSRTVSNVISSIVF 165
Query: 195 ADPTSKTAREF 205
D +EF
Sbjct: 166 GDRFDYKDKEF 176
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP P IGN L+L ++ + SL K+++ +GP+ ++ G VV
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 88 KEILQNQDTSFCNRTIP----------DAIYAHGHHEFGMPWLPVATLWRNLRKICNSHA 137
+E L +Q F R ++++G + +ATL
Sbjct: 66 REALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL------------ 113
Query: 138 FSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL---ISNTIFSIDL 194
R + ++IQ+ ++ + R G A D T L +SN I SI
Sbjct: 114 ---RDFGVGKRGIEERIQEEAGFLIDALRG-----TGGANIDPTFFLSRTVSNVISSIVF 165
Query: 195 ADPTSKTAREF 205
D +EF
Sbjct: 166 GDRFDYKDKEF 176
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP P IGN L+L ++ + SL K+++ +GP+ ++ G VV
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 88 KEILQNQDTSFCNRTIP----------DAIYAHGHHEFGMPWLPVATLWRNLRKICNSHA 137
+E L +Q F R ++++G + +ATL
Sbjct: 66 REALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL------------ 113
Query: 138 FSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL---ISNTIFSIDL 194
R + ++IQ+ ++ + R G A D T L +SN I SI
Sbjct: 114 ---RDFGVGKRGIEERIQEEAGFLIDALRG-----TGGANIDPTFFLSRTVSNVISSIVF 165
Query: 195 ADPTSKTAREF 205
D +EF
Sbjct: 166 GDRFDYKDKEF 176
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP P IGN L+L ++ + SL K+++ +GP+ ++ G VV
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 88 KEILQNQDTSFCNRTIP----------DAIYAHGHHEFGMPWLPVATLWRNLRKICNSHA 137
+E L +Q F R ++++G + +ATL
Sbjct: 66 REALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL------------ 113
Query: 138 FSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL---ISNTIFSIDL 194
R + ++IQ+ ++ + R G A D T L +SN I SI
Sbjct: 114 ---RDFGVGKRGIEERIQEEAGFLIDALRG-----TGGANIDPTFFLSRTVSNVISSIVF 165
Query: 195 ADPTSKTAREF 205
D +EF
Sbjct: 166 GDRFDYKDKEF 176
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGPTP P IGN L+L ++ + SL K+++ +GP+ ++ G VV
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 88 KEILQNQDTSFCNR 101
KE L +Q F R
Sbjct: 66 KEALVDQAEEFSGR 79
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 19/270 (7%)
Query: 28 KSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
K+ S+ PPGP +P+IGN +G H S A+LA+ +G + ++ G VV +
Sbjct: 4 KTSSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAI 63
Query: 88 KEILQNQDTSFCNRTIPDA--IYAHGHHEFGMPWLPVATLWRNLRKICNS--HAFSSRQL 143
+ L Q ++F +R + + + G M + + W+ R+ +S F +RQ
Sbjct: 64 HQALVQQGSAFADRPSFASFRVVSGGR---SMAFGHYSEHWKVQRRAAHSMMRNFFTRQP 120
Query: 144 DANQHLRR---KKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDLA--DPT 198
+ Q L + ++L+A + G + N++S F + DP
Sbjct: 121 RSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDP- 179
Query: 199 SKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQR 258
RE N G +L D P L+ R + F ++ F I +
Sbjct: 180 --EFRELLSHNEEFGRTVGAGSLVDVMPWLQYFP--NPVRTVFREFEQLNRNFSNFILDK 235
Query: 259 LKQRQE--RDFTESKDMLDALLKICEDKSV 286
+ E R +DM+DA + E K+
Sbjct: 236 FLRHCESLRPGAAPRDMMDAFILSAEKKAA 265
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 34/271 (12%)
Query: 25 RGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSA 84
+G KS PP P +P++G++L LG PH +L+++++ +G ++ ++ G +V S
Sbjct: 13 KGLKS-----PPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRL 67
Query: 85 AMAKEILQNQDTSFCNRT-------IPDAIYAHGHHEFGMPWLPVATLWRNLRKICN--S 135
++ L Q F R I D + G W L +N + S
Sbjct: 68 DTIRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAARRRLAQNALNTFSIAS 127
Query: 136 HAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFD-------TTLNLISNT 188
SS +H+ K+ + L++ +QE + G FD + N+I
Sbjct: 128 DPASSSSCYLEEHV-SKEAKALISRLQE-------LMAGPGHFDPYNQVVVSVANVIGAM 179
Query: 189 IFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKML 248
F + + + K T+ +E A N DFFP+L L + +R + + L
Sbjct: 180 CFGQHFPESSDEMLSLVKNTH-EFVETASSGNPLDFFPILRYLPNPAL-QRFKAFNQRFL 237
Query: 249 DVFDRLIDQRLKQRQERDFTESKDMLDALLK 279
+ + + Q+ D +D+ AL K
Sbjct: 238 WFLQKTVQEHY---QDFDKNSVRDITGALFK 265
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 26/183 (14%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGP+P PV+GNLL++ K +S +L + +G + ++ G VV
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 88 KEILQNQDTSFCNR---TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLD 144
+E L +Q +F R + D I+ +G+ WR LR+ + + R
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIF----QGYGV-IFANGERWRALRRFSLA---TMRDFG 117
Query: 145 ANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTL---NLISNTIFSI------DLA 195
+ ++IQ+ + E R A D TL ++ SN I SI D
Sbjct: 118 MGKRSVEERIQEEARCLVEELRKSKG-----ALLDNTLLFHSITSNIICSIVFGKRFDYK 172
Query: 196 DPT 198
DP
Sbjct: 173 DPV 175
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 26/183 (14%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGP+P PV+GNLL++ K +S +L + +G + ++ G VV
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 88 KEILQNQDTSFCNR---TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLD 144
+E L +Q +F R + D I+ +G+ WR LR+ + + R
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIF----QGYGV-IFANGERWRALRRFSLA---TMRDFG 117
Query: 145 ANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTL---NLISNTIFSI------DLA 195
+ ++IQ+ + E R A D TL ++ SN I SI D
Sbjct: 118 MGKRSVEERIQEEARCLVEELRKSKG-----ALLDNTLLFHSITSNIICSIVFGKRFDYK 172
Query: 196 DPT 198
DP
Sbjct: 173 DPV 175
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 26/183 (14%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGP+P PV+GNLL++ K +S +L + +G + ++ G VV
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 88 KEILQNQDTSFCNR---TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLD 144
+E L +Q +F R + D I+ +G+ WR LR+ + + R
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIF----QGYGV-IFANGERWRALRRFSLA---TMRDFG 117
Query: 145 ANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTL---NLISNTIFSI------DLA 195
+ ++IQ+ + E R A D TL ++ SN I SI D
Sbjct: 118 MGKRSVEERIQEEARCLVEELRKSKG-----ALLDNTLLFHSITSNIICSIVFGKRFDYK 172
Query: 196 DPT 198
DP
Sbjct: 173 DPV 175
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 26/183 (14%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGP+P PV+GNLL++ K +S +L + +G + ++ G VV
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 88 KEILQNQDTSFCNR---TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLD 144
+E L +Q +F R + D I+ +G+ WR LR+ + + R
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIF----QGYGV-IFANGERWRALRRFSLA---TMRDFG 117
Query: 145 ANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTL---NLISNTIFSI------DLA 195
+ ++IQ+ + E R A D TL ++ SN I SI D
Sbjct: 118 MGKRSVEERIQEEARCLVEELRKSKG-----ALLDNTLLFHSITSNIICSIVFGKRFDYK 172
Query: 196 DPT 198
DP
Sbjct: 173 DPV 175
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 26/183 (14%)
Query: 29 SGSRRLPPGPTPYPVIGNLLELGDKP-HKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMA 87
S +LPPGP+P PV+GNLL++ K +S +L + +G + ++ G VV
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 88 KEILQNQDTSFCNR---TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLD 144
+E L +Q +F R + D I+ +G+ WR LR+ + + R
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIF----QGYGV-IFANGERWRALRRFSLA---TMRDFG 117
Query: 145 ANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTL---NLISNTIFSI------DLA 195
+ ++IQ+ + E R A D TL ++ SN I SI D
Sbjct: 118 MGKRSVEERIQEEARCLVEELRKSKG-----ALLDNTLLFHSITSNIICSIVFGKRFDYK 172
Query: 196 DPT 198
DP
Sbjct: 173 DPV 175
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 117/268 (43%), Gaps = 37/268 (13%)
Query: 28 KSGSRRLPPGPTPYPVIGNL--LELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAA 85
K+G++ P P++G+L L H + KL K +GPI S++ G TTV+
Sbjct: 4 KTGAK-YPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQ 62
Query: 86 MAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQL-- 143
+AKE+L + F R + ++ G+ + W+ R++ A ++ L
Sbjct: 63 LAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRL----AMATFALFK 118
Query: 144 DANQHLRRKKIQ------DLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDL--A 195
D +Q L + Q D+LA G +I I F N+IS F+
Sbjct: 119 DGDQKLEKIICQEISTLCDMLA-----THNGQSIDISFPVFVAVTNVISLICFNTSYKNG 173
Query: 196 DPTSKTAREFKQTNWGMMEEAGKPNLSDFFP---VLENLDLQGIRRRMTVYFGKMLDVFD 252
DP + + N G+++ K +L D P + N L+ ++ + + +
Sbjct: 174 DPELNVIQNY---NEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIR--------N 222
Query: 253 RLIDQRLKQRQERDFTES-KDMLDALLK 279
L+++ L+ +E+ ++S +MLD L++
Sbjct: 223 DLLNKILENYKEKFRSDSITNMLDTLMQ 250
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 36 PGPTPYPVIGNLLELG-----DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEI 90
PGPT +P++G+LLE+ K H +LA+ K +G I +K G +V S ++ + +
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEAL 86
Query: 91 LQNQ 94
+ +
Sbjct: 87 YRTE 90
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 44 IGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR 101
I +L + PH + K ++++G I SL G ++TVV + + KE L +Q F +R
Sbjct: 26 IYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR 83
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 44 IGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR 101
I +L + PH + K ++++G I SL G ++TVV + + KE L +Q F +R
Sbjct: 26 IYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR 83
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 47/264 (17%)
Query: 36 PGPTPYPVIGNLLELGDKPHKSLA----KLAKIHGPIMSLKFGQVTTVVFSSAAMAKEIL 91
PGPTP P +GN+L HK + K +G + GQ + + M K +L
Sbjct: 18 PGPTPLPFLGNILSY----HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 73
Query: 92 QNQDTS-FCNRTIPDAIYAHGHHEFGMPWLPVA--TLWRNLRKICNSHAFSSRQLDANQH 148
+ S F NR G F + +A W+ LR + S F+S +L
Sbjct: 74 VKECYSVFTNRR------PFGPVGFMKSAISIAEDEEWKRLRSLL-SPTFTSGKLKEMVP 126
Query: 149 LRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDL------ADPTSKTA 202
+ + L+ ++ G + + ++++I++T F +++ DP +
Sbjct: 127 IIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENT 186
Query: 203 REFKQTNWGMMEEAGKPNLSDFF----------PVLENLDLQGIRRRMTVYFGKMLDVFD 252
++ + ++ L FF P+LE L++ R +T + K +
Sbjct: 187 KKLLRFDF----------LDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSV---K 233
Query: 253 RLIDQRLKQRQERDFTESKDMLDA 276
R+ + RL+ Q+ + M+D+
Sbjct: 234 RMKESRLEDTQKHRVDFLQLMIDS 257
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 47/264 (17%)
Query: 36 PGPTPYPVIGNLLELGDKPHKSLA----KLAKIHGPIMSLKFGQVTTVVFSSAAMAKEIL 91
PGPTP P +GN+L HK + K +G + GQ + + M K +L
Sbjct: 19 PGPTPLPFLGNILSY----HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 74
Query: 92 QNQDTS-FCNRTIPDAIYAHGHHEFGMPWLPVA--TLWRNLRKICNSHAFSSRQLDANQH 148
+ S F NR G F + +A W+ LR + S F+S +L
Sbjct: 75 VKECYSVFTNRR------PFGPVGFMKSAISIAEDEEWKRLRSLL-SPTFTSGKLKEMVP 127
Query: 149 LRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDL------ADPTSKTA 202
+ + L+ ++ G + + ++++I++T F +++ DP +
Sbjct: 128 IIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENT 187
Query: 203 REFKQTNWGMMEEAGKPNLSDFF----------PVLENLDLQGIRRRMTVYFGKMLDVFD 252
++ + ++ L FF P+LE L++ R +T + K +
Sbjct: 188 KKLLRFDF----------LDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSV---K 234
Query: 253 RLIDQRLKQRQERDFTESKDMLDA 276
R+ + RL+ Q+ + M+D+
Sbjct: 235 RMKESRLEDTQKHRVDFLQLMIDS 258
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 47/264 (17%)
Query: 36 PGPTPYPVIGNLLELGDKPHKSLA----KLAKIHGPIMSLKFGQVTTVVFSSAAMAKEIL 91
PGPTP P +GN+L HK + K +G + GQ + + M K +L
Sbjct: 17 PGPTPLPFLGNILSY----HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 72
Query: 92 QNQDTS-FCNRTIPDAIYAHGHHEFGMPWLPVA--TLWRNLRKICNSHAFSSRQLDANQH 148
+ S F NR G F + +A W+ LR + S F+S +L
Sbjct: 73 VKECYSVFTNRR------PFGPVGFMKSAISIAEDEEWKRLRSLL-SPTFTSGKLKEMVP 125
Query: 149 LRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDL------ADPTSKTA 202
+ + L+ ++ G + + ++++I++T F +++ DP +
Sbjct: 126 IIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENT 185
Query: 203 REFKQTNWGMMEEAGKPNLSDFF----------PVLENLDLQGIRRRMTVYFGKMLDVFD 252
++ + ++ L FF P+LE L++ R +T + K +
Sbjct: 186 KKLLRFDF----------LDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSV---K 232
Query: 253 RLIDQRLKQRQERDFTESKDMLDA 276
R+ + RL+ Q+ + M+D+
Sbjct: 233 RMKESRLEDTQKHRVDFLQLMIDS 256
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 186 SNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLEN--LDLQGIRRRMTVY 243
+ T+ LA+ T + F N G +E ++ PV EN L QGI+
Sbjct: 137 NKTVDDTKLAEYTDLMLKLFDSNNDGKLE---LTEMARLLPVQENFLLKFQGIKM-CGKE 192
Query: 244 FGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLK-ICEDKSVEIDINDI 293
F K +++D Q+ + ++ LDALLK +CE E+DIN+I
Sbjct: 193 FNKAFELYD----------QDGNGYIDENELDALLKDLCEKNKQELDINNI 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,707,596
Number of Sequences: 62578
Number of extensions: 336973
Number of successful extensions: 778
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 38
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)