Query 040285
Match_columns 298
No_of_seqs 109 out of 1102
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 8.1E-36 2.8E-40 277.7 25.0 260 30-297 5-278 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 4.8E-35 1.7E-39 273.0 20.2 265 28-297 4-284 (507)
3 3e6i_A CYPIIE1, P450-J, cytoch 100.0 1.7E-32 5.8E-37 253.8 23.7 258 28-297 5-272 (476)
4 2hi4_A Cytochrome P450 1A2; CY 100.0 1.6E-32 5.4E-37 255.8 22.9 256 35-297 18-287 (495)
5 3qz1_A Steroid 21-hydroxylase; 100.0 2.7E-33 9.2E-38 260.6 13.7 253 28-297 24-284 (496)
6 3s79_A Cytochrome P450 19A1; o 100.0 2.1E-32 7.2E-37 255.0 19.0 253 30-297 42-300 (503)
7 3czh_A Cytochrome P450 2R1; vi 100.0 4.2E-32 1.4E-36 252.1 20.0 259 30-297 9-278 (481)
8 3tbg_A Cytochrome P450 2D6; mo 100.0 1.3E-31 4.5E-36 247.9 22.4 261 29-297 6-277 (479)
9 2fdv_A Cytochrome P450 2A6; CY 100.0 1.5E-31 5.1E-36 248.0 21.9 254 33-297 10-273 (476)
10 3nxu_A Cytochrome P450 3A4; al 100.0 5.5E-33 1.9E-37 257.9 11.3 254 31-297 12-277 (485)
11 3gw9_A Sterol 14alpha-demethyl 100.0 2.9E-32 9.8E-37 250.4 15.1 254 32-297 2-258 (450)
12 1r9o_A Cytochrome P450 2C9; mo 100.0 2.8E-31 9.4E-36 246.2 21.5 254 33-297 11-274 (477)
13 1po5_A Cytochrome P450 2B4; ox 100.0 2.3E-31 7.7E-36 246.8 19.7 255 32-297 9-273 (476)
14 3k9v_A 1,25-dihydroxyvitamin D 100.0 7.6E-31 2.6E-35 243.0 19.7 256 27-297 18-288 (482)
15 3ld6_A Lanosterol 14-alpha dem 100.0 2.4E-31 8.3E-36 245.6 11.2 247 31-297 9-257 (461)
16 2ij2_A Cytochrome P450 BM3; mo 100.0 1E-28 3.6E-33 228.7 21.1 252 33-297 3-258 (470)
17 3i3k_A Lanosterol 14-alpha dem 100.0 1.6E-29 5.5E-34 233.2 10.6 249 29-297 7-257 (461)
18 2cib_A Cytochrome P450 51; hem 100.0 3.5E-28 1.2E-32 224.2 16.4 245 33-297 4-250 (455)
19 2ve3_A Putative cytochrome P45 100.0 5.5E-28 1.9E-32 222.2 17.0 241 29-297 8-248 (444)
20 3n9y_A Cholesterol SIDE-chain 100.0 1.4E-27 4.7E-32 221.6 18.8 256 28-297 4-280 (487)
21 3dbg_A Putative cytochrome P45 99.9 3.1E-28 1.1E-32 225.2 8.4 243 33-297 23-268 (467)
22 2cd8_A Cytochrome P450 monooxy 99.9 8.9E-26 3.1E-30 207.2 16.2 226 32-297 25-257 (436)
23 3mdm_A Cholesterol 24-hydroxyl 99.9 1.1E-24 3.8E-29 200.4 21.7 234 52-297 10-248 (456)
24 3v8d_A Cholesterol 7-alpha-mon 99.9 1.1E-26 3.8E-31 215.9 7.1 250 27-297 7-262 (491)
25 1jfb_A Nitric-oxide reductase 99.9 1E-23 3.4E-28 191.5 21.5 227 34-297 2-234 (404)
26 3awm_A Fatty acid alpha-hydrox 99.9 7.4E-23 2.5E-27 186.4 21.0 229 35-296 4-235 (415)
27 1izo_A P450bsbeta, cytochrome 99.9 8.4E-23 2.9E-27 186.1 20.5 227 40-296 7-236 (417)
28 1cpt_A Cytochrome P450-TERP; o 99.9 2.8E-23 9.6E-28 190.0 15.4 239 30-297 3-261 (428)
29 1ued_A P450 OXYC, P450 monooxy 99.9 4.3E-22 1.5E-26 181.0 21.3 220 31-297 8-239 (406)
30 3dax_A Cytochrome P450 7A1; ch 99.9 1.3E-23 4.5E-28 194.9 10.1 246 29-295 9-260 (491)
31 2zbx_A Cytochrome P450-SU1; be 99.9 1.7E-21 5.9E-26 177.3 22.3 224 33-297 5-238 (412)
32 3b6h_A Prostacyclin synthase; 99.9 2.2E-22 7.6E-27 187.2 14.2 250 27-294 12-265 (498)
33 1n97_A CYP175A1; electron tran 99.9 8.3E-23 2.8E-27 184.6 6.8 197 36-256 2-199 (389)
34 3oo3_A OXY protein; cytochrome 99.9 1.9E-20 6.3E-25 168.8 19.1 206 51-297 11-220 (384)
35 2jjn_A Cytochrome P450 113A1; 99.9 1.3E-20 4.5E-25 171.4 17.9 231 18-297 4-235 (411)
36 3abb_A CYP105D6, cytochrome P4 99.9 1.4E-20 4.8E-25 171.0 17.4 209 48-297 20-237 (408)
37 2zwu_A Camphor 5-monooxygenase 99.9 7.5E-21 2.6E-25 173.3 15.5 226 27-297 5-243 (415)
38 1s1f_A Putative cytochrome P45 99.9 1.1E-20 3.9E-25 171.6 16.3 222 32-297 7-236 (406)
39 3aba_A Cytochrome P450; oxidor 99.8 7.5E-20 2.6E-24 166.0 20.9 218 36-297 6-231 (403)
40 3tkt_A Cytochrome P450; aromat 99.8 1.3E-19 4.5E-24 166.7 19.8 219 54-297 47-283 (450)
41 3b98_A Prostaglandin I2 syntha 99.8 6.5E-21 2.2E-25 176.1 11.1 157 29-193 14-174 (475)
42 3tyw_A Putative cytochrome P45 99.8 3.4E-19 1.2E-23 162.3 21.9 208 50-297 27-243 (417)
43 1odo_A Putative cytochrome P45 99.8 4.4E-20 1.5E-24 167.8 15.9 212 49-297 12-236 (408)
44 3ivy_A Cytochrome P450 CYP125; 99.8 1.7E-19 5.7E-24 165.3 19.8 229 32-297 17-262 (433)
45 2wm5_A CYP124, putative cytoch 99.8 2.8E-19 9.5E-24 163.9 20.3 214 52-297 44-268 (435)
46 4fb2_A P450CIN; heme, monooxyg 99.8 1.8E-19 6.3E-24 163.1 18.0 207 50-297 17-226 (398)
47 3a4g_A Vitamin D hydroxylase; 99.8 2.3E-19 7.7E-24 163.3 18.1 207 50-297 18-230 (411)
48 2y5n_A MYCG, P-450-like protei 99.8 6.7E-19 2.3E-23 160.5 20.3 209 50-297 35-248 (417)
49 3ejb_B Biotin biosynthesis cyt 99.8 4.9E-19 1.7E-23 160.6 19.1 211 52-297 13-228 (404)
50 1z8o_A 6-deoxyerythronolide B 99.8 4.2E-19 1.4E-23 161.1 18.1 209 50-297 12-235 (404)
51 2z36_A MOXA, cytochrome P450 t 99.8 3.7E-19 1.3E-23 162.0 16.0 221 34-297 8-239 (413)
52 1gwi_A CYP154C1, cytochrome P4 99.8 9.3E-19 3.2E-23 159.2 18.6 209 49-297 14-236 (411)
53 3dsk_A Cytochrome P450 74A, ch 99.8 2.2E-19 7.4E-24 166.9 14.1 164 30-197 25-206 (495)
54 1q5d_A P450 epoxidase; cytochr 99.8 1.8E-18 6.1E-23 157.7 17.9 214 50-297 24-248 (419)
55 2xkr_A CYP142, putative cytoch 99.8 4.2E-18 1.4E-22 154.2 20.0 207 51-297 17-224 (398)
56 2uuq_A CYP130, cytochrome P450 99.8 3.1E-18 1.1E-22 155.9 18.2 216 43-297 11-244 (414)
57 3r9b_A Cytochrome P450 164A2; 99.8 8.8E-19 3E-23 159.6 13.8 214 51-297 28-250 (418)
58 2z3t_A Cytochrome P450; monoxy 99.8 2.9E-18 9.8E-23 156.7 16.3 212 52-297 20-248 (425)
59 2dkk_A Cytochrome P450; CYP158 99.8 2.6E-18 9E-23 156.2 14.8 205 51-297 26-239 (411)
60 3lxh_A Cytochrome P450; heme, 99.8 3.7E-18 1.3E-22 155.7 15.8 230 33-297 12-250 (421)
61 2xbk_A PIMD protein; epoxidati 99.8 1.9E-17 6.6E-22 150.2 19.9 202 50-297 24-235 (404)
62 3dan_A Cytochrome P450 74A2; A 99.8 3.9E-18 1.3E-22 157.4 14.5 164 30-196 6-187 (473)
63 3buj_A CALO2; heme, iron, meta 99.8 1.2E-17 4.2E-22 151.1 16.2 207 52-297 13-227 (397)
64 1lfk_A OXYB, P450 monooxygenas 99.8 1.1E-17 3.9E-22 151.3 15.2 198 58-297 19-230 (398)
65 3oft_A Cytochrome P450, CYP101 99.8 1.4E-17 4.8E-22 150.5 15.4 205 51-297 23-228 (396)
66 3nc3_A Cytochrome P450 CYPX; c 99.7 4.8E-18 1.6E-22 155.9 11.9 210 52-297 53-263 (441)
67 3mgx_A Putative P450 monooxyge 99.7 6.1E-17 2.1E-21 147.4 16.1 206 52-297 37-248 (415)
68 1n40_A P450 MT2, cytochrome P4 99.7 2.3E-17 7.8E-22 149.3 12.0 204 50-297 14-227 (396)
69 3p3o_A Cytochrome P450; monoox 99.7 5.5E-17 1.9E-21 147.7 8.8 210 52-297 33-247 (416)
70 3rwl_A Cytochrome P450 alkane 99.7 3.6E-15 1.2E-19 136.1 20.7 211 52-297 38-259 (426)
71 3b4x_A 367AA long hypothetical 99.7 5.8E-16 2E-20 138.6 13.9 192 54-297 1-204 (367)
72 2wiy_A XPLA-heme, cytochrome P 99.7 1.4E-15 4.9E-20 137.4 16.2 208 52-297 20-227 (394)
73 1io7_A Cytochrome P450 CYP119; 99.6 1.5E-15 5.3E-20 135.9 13.0 192 54-297 1-203 (368)
74 2rfb_A Cytochrome P450; heme, 99.6 2.5E-15 8.6E-20 133.2 11.1 180 63-297 2-182 (343)
75 4dnj_A Putative cytochrome P45 99.4 4.6E-12 1.6E-16 115.0 16.0 147 38-193 17-170 (412)
76 4dxy_A Cytochrome P450, CYP101 99.3 1.8E-10 6.3E-15 104.6 17.7 211 52-297 37-249 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.2 5.3E-09 1.8E-13 93.6 -10.8 130 34-195 35-180 (381)
78 3lqv_A PRE-mRNA branch site pr 88.4 2.5 8.4E-05 29.8 7.9 68 33-102 2-76 (115)
79 2krb_A Eukaryotic translation 87.8 3 0.0001 27.2 7.5 59 43-101 5-75 (81)
80 2diu_A KIAA0430 protein; struc 87.4 1.6 5.3E-05 30.3 5.8 61 42-103 12-76 (96)
81 1iqt_A AUF1, heterogeneous nuc 85.5 2.5 8.5E-05 27.0 6.0 58 43-102 3-69 (75)
82 1s79_A Lupus LA protein; RRM, 85.5 3 0.0001 29.0 6.8 61 40-102 12-80 (103)
83 2mss_A Protein (musashi1); RNA 81.8 4.5 0.00015 25.8 6.1 58 43-102 3-69 (75)
84 2kxn_B Transformer-2 protein h 79.8 15 0.0005 26.5 8.9 65 36-102 43-117 (129)
85 4fxv_A ELAV-like protein 1; RN 79.6 4 0.00014 28.0 5.5 59 42-102 22-90 (99)
86 1x5u_A Splicing factor 3B subu 79.0 13 0.00044 25.4 8.5 62 39-102 15-86 (105)
87 1whx_A Hypothetical protein ri 78.8 9.6 0.00033 26.6 7.5 60 41-102 12-75 (111)
88 2nlw_A Eukaryotic translation 78.7 7.5 0.00026 26.8 6.8 62 40-101 16-89 (105)
89 2cqc_A Arginine/serine-rich sp 78.2 6.8 0.00023 26.2 6.3 67 34-102 10-86 (95)
90 2dnz_A Probable RNA-binding pr 77.4 11 0.00037 25.1 7.2 63 38-102 4-76 (95)
91 3mdf_A Peptidyl-prolyl CIS-tra 76.5 11 0.00037 24.5 6.8 64 37-102 5-78 (85)
92 2cq3_A RNA-binding protein 9; 75.9 13 0.00044 25.3 7.4 64 37-102 13-84 (103)
93 2dnp_A RNA-binding protein 14; 74.9 15 0.00052 24.2 8.1 65 36-102 6-72 (90)
94 2d9p_A Polyadenylate-binding p 74.4 13 0.00043 25.3 7.0 67 34-102 10-84 (103)
95 2dhg_A TRNA selenocysteine ass 74.4 17 0.0006 24.6 8.4 66 35-102 5-81 (104)
96 1x5p_A Negative elongation fac 74.3 10 0.00035 25.5 6.4 61 38-102 14-78 (97)
97 3ex7_B RNA-binding protein 8A; 73.9 14 0.00048 26.2 7.4 60 41-102 24-93 (126)
98 3s7r_A Heterogeneous nuclear r 73.8 6.2 0.00021 25.9 5.1 64 37-102 9-81 (87)
99 2ytc_A PRE-mRNA-splicing facto 73.6 16 0.00053 23.7 7.6 61 39-101 12-77 (85)
100 4a8x_A RNA-binding protein wit 73.3 13 0.00045 24.2 6.7 59 42-102 7-76 (88)
101 4f25_A Polyadenylate-binding p 73.2 8 0.00027 27.2 5.8 59 42-102 8-74 (115)
102 3ns6_A Eukaryotic translation 73.2 10 0.00034 25.9 6.1 62 41-102 8-84 (100)
103 2hvz_A Splicing factor, argini 72.6 10 0.00036 25.6 6.2 58 43-102 4-66 (101)
104 2kvi_A Nuclear polyadenylated 71.7 17 0.00058 24.4 7.0 61 40-102 11-74 (96)
105 1p27_B RNA-binding protein 8A; 71.5 14 0.00047 25.3 6.6 59 42-102 26-94 (106)
106 3md1_A Nuclear and cytoplasmic 71.1 8.8 0.0003 24.8 5.3 58 43-102 5-72 (83)
107 2do4_A Squamous cell carcinoma 71.1 19 0.00066 24.2 7.3 62 39-102 17-87 (100)
108 2jvr_A Nucleolar protein 3; RN 71.1 12 0.0004 26.4 6.1 60 41-102 30-96 (111)
109 2dnm_A SRP46 splicing factor; 70.5 18 0.0006 24.5 7.0 62 39-102 13-84 (103)
110 2dgv_A HnRNP M, heterogeneous 70.2 20 0.00069 23.5 7.3 61 40-102 9-77 (92)
111 1x4g_A Nucleolysin TIAR; struc 70.0 18 0.00061 24.9 7.0 61 40-102 26-90 (109)
112 3j1r_A Archaeal adhesion filam 69.8 5 0.00017 20.1 2.6 19 4-22 4-22 (26)
113 2dgs_A DAZ-associated protein 69.7 22 0.00076 23.8 7.7 63 38-102 9-80 (99)
114 2i2y_A Fusion protein consists 69.7 30 0.001 25.3 8.7 62 39-102 73-139 (150)
115 3beg_B Splicing factor, argini 69.5 17 0.00057 25.5 6.8 60 41-102 18-80 (115)
116 1whw_A Hypothetical protein ri 69.3 19 0.00065 24.1 6.9 62 39-102 8-79 (99)
117 2dgx_A KIAA0430 protein; RRM d 69.0 17 0.00059 24.3 6.6 62 41-102 11-81 (96)
118 1nu4_A U1A RNA binding domain; 69.0 16 0.00056 24.3 6.5 63 40-102 9-80 (97)
119 2cph_A RNA binding motif prote 68.9 24 0.00083 23.9 9.0 62 39-102 15-88 (107)
120 1oo0_B CG8781-PA, drosophila Y 68.7 18 0.00062 24.8 6.8 59 42-102 29-97 (110)
121 2la6_A RNA-binding protein FUS 68.6 21 0.00072 23.9 7.0 63 38-102 12-92 (99)
122 2cpf_A RNA binding motif prote 68.4 18 0.00062 24.2 6.6 62 39-102 5-79 (98)
123 1sjq_A Polypyrimidine tract-bi 68.4 22 0.00074 24.8 7.0 65 36-102 13-83 (105)
124 2pe8_A Splicing factor 45; RRM 68.2 8.4 0.00029 26.8 4.8 68 35-102 4-85 (105)
125 2e5h_A Zinc finger CCHC-type a 68.1 23 0.00079 23.4 7.1 62 38-101 15-86 (94)
126 2dgt_A RNA-binding protein 30; 67.2 22 0.00074 23.5 6.7 62 39-102 10-73 (92)
127 3ucg_A Polyadenylate-binding p 66.9 8.7 0.0003 25.2 4.6 58 43-102 10-76 (89)
128 2dh8_A DAZ-associated protein 66.8 14 0.00047 25.2 5.8 63 38-102 15-86 (105)
129 2jvo_A Nucleolar protein 3; nu 66.7 13 0.00045 25.7 5.7 60 41-102 33-94 (108)
130 1rk8_A CG8781-PA, CG8781-PA pr 66.6 14 0.00047 27.9 6.2 59 42-102 75-143 (165)
131 3bs9_A Nucleolysin TIA-1 isofo 66.6 9 0.00031 25.0 4.6 60 41-102 8-77 (87)
132 2cqb_A Peptidyl-prolyl CIS-tra 66.5 16 0.00056 24.6 6.1 65 36-102 9-83 (102)
133 3s8s_A Histone-lysine N-methyl 66.5 11 0.00037 26.4 5.1 62 38-101 5-76 (110)
134 2kn4_A Immunoglobulin G-bindin 66.1 26 0.00089 25.8 7.7 62 39-102 70-141 (158)
135 2div_A TRNA selenocysteine ass 66.0 22 0.00076 23.8 6.7 65 36-102 6-81 (99)
136 1uaw_A Mouse-musashi-1; RNP-ty 65.8 7.9 0.00027 24.6 4.0 58 43-102 4-70 (77)
137 2bz2_A Negative elongation fac 65.6 14 0.00048 26.3 5.7 59 40-102 40-102 (121)
138 2rs2_A Musashi-1, RNA-binding 65.6 15 0.0005 25.5 5.7 62 39-102 25-95 (109)
139 2cqd_A RNA-binding region cont 65.4 18 0.00062 25.2 6.3 61 40-102 18-87 (116)
140 1x5s_A Cold-inducible RNA-bind 65.1 28 0.00097 23.3 8.5 64 37-102 10-83 (102)
141 1wg5_A Heterogeneous nuclear r 65.1 25 0.00084 24.0 6.8 61 40-102 16-85 (104)
142 2jwn_A Embryonic polyadenylate 64.5 12 0.00041 26.5 5.2 59 42-102 39-106 (124)
143 2a3j_A U1 small nuclear ribonu 64.4 24 0.00083 25.4 6.9 62 41-102 31-101 (127)
144 1x4b_A Heterogeneous nuclear r 64.1 9 0.00031 26.8 4.4 60 41-102 29-97 (116)
145 1wi8_A EIF-4B, eukaryotic tran 64.1 16 0.00056 24.8 5.7 65 35-102 11-85 (104)
146 2x1f_A MRNA 3'-END-processing 64.0 25 0.00086 23.4 6.6 60 41-102 4-73 (96)
147 2jrs_A RNA-binding protein 39; 63.1 26 0.00088 24.2 6.6 60 41-102 28-97 (108)
148 2wbr_A GW182, gawky, LD47780P; 62.9 24 0.00083 23.8 6.0 52 39-92 7-61 (89)
149 3ulh_A THO complex subunit 4; 62.6 18 0.00061 24.7 5.7 60 41-102 31-99 (107)
150 1p1t_A Cleavage stimulation fa 62.3 22 0.00077 24.0 6.2 59 41-101 10-78 (104)
151 1x4a_A Splicing factor, argini 62.2 34 0.0012 23.3 7.7 60 41-102 24-90 (109)
152 1x4d_A Matrin 3; structural ge 61.7 23 0.0008 24.4 6.1 70 33-103 9-84 (102)
153 2cqi_A Nucleolysin TIAR; RNA r 61.5 34 0.0012 23.0 7.6 63 38-102 14-84 (103)
154 2voo_A Lupus LA protein; RNA-b 60.5 13 0.00045 29.0 5.1 59 42-102 112-178 (193)
155 2dgo_A Cytotoxic granule-assoc 60.4 22 0.00074 24.7 5.9 64 37-102 13-86 (115)
156 2hzc_A Splicing factor U2AF 65 60.3 31 0.0011 22.2 6.4 60 41-102 8-81 (87)
157 2lea_A Serine/arginine-rich sp 60.3 31 0.0011 24.9 6.9 60 41-102 49-118 (135)
158 3n9u_C Cleavage and polyadenyl 60.0 22 0.00074 26.6 6.1 59 42-102 58-128 (156)
159 2xnq_A Nuclear polyadenylated 60.0 35 0.0012 22.9 6.7 59 41-101 24-85 (97)
160 2err_A Ataxin-2-binding protei 59.9 18 0.00063 24.9 5.4 60 41-102 31-98 (109)
161 2cpj_A Non-POU domain-containi 59.9 27 0.00091 23.4 6.2 61 40-102 16-80 (99)
162 3s6e_A RNA-binding protein 39; 59.9 14 0.00047 26.2 4.7 68 35-102 3-84 (114)
163 2cq4_A RNA binding motif prote 59.8 15 0.0005 25.6 4.9 59 42-102 28-95 (114)
164 2la4_A Nuclear and cytoplasmic 59.5 33 0.0011 23.0 6.6 59 41-101 29-91 (101)
165 2cpz_A CUG triplet repeat RNA- 59.1 26 0.00089 24.3 6.1 61 40-102 26-96 (115)
166 2cpi_A CCR4-NOT transcription 59.0 7.3 0.00025 27.2 3.1 62 39-102 15-92 (111)
167 2ywk_A Putative RNA-binding pr 58.7 20 0.0007 23.7 5.3 61 40-102 17-86 (95)
168 3p5t_L Cleavage and polyadenyl 58.3 18 0.00061 23.9 4.9 58 43-102 5-74 (90)
169 2fy1_A RNA-binding motif prote 57.9 37 0.0013 23.7 6.8 63 38-102 6-77 (116)
170 2dnq_A RNA-binding protein 4B; 57.4 37 0.0013 22.1 7.2 64 37-102 6-71 (90)
171 2dis_A Unnamed protein product 57.2 42 0.0014 22.8 7.6 60 41-102 10-83 (109)
172 1why_A Hypothetical protein ri 57.2 39 0.0013 22.4 9.2 60 38-99 16-79 (97)
173 2cqg_A TDP-43, TAR DNA-binding 57.1 41 0.0014 22.6 7.1 62 38-102 14-84 (103)
174 2cq1_A PTB-like protein L; RRM 56.7 29 0.00098 23.8 5.8 63 38-102 14-82 (101)
175 2ku7_A MLL1 PHD3-CYP33 RRM chi 56.7 38 0.0013 24.2 6.9 51 41-93 65-124 (140)
176 2cpx_A Hypothetical protein FL 56.7 31 0.0011 23.7 6.2 63 38-102 24-96 (115)
177 1wf1_A RNA-binding protein RAL 56.6 34 0.0012 23.4 6.3 62 40-102 28-91 (110)
178 1sjr_A Polypyrimidine tract-bi 56.4 40 0.0014 25.6 7.0 56 42-99 49-110 (164)
179 1x4f_A Matrin 3; structural ge 56.1 26 0.00089 24.7 5.6 67 36-103 22-94 (112)
180 2ki2_A SS-DNA binding protein 55.9 20 0.00068 23.5 4.8 57 43-102 5-71 (90)
181 2cpd_A Apobec-1 stimulating pr 55.7 39 0.0013 22.5 6.5 61 40-102 16-80 (99)
182 3d2w_A TAR DNA-binding protein 55.6 30 0.001 22.8 5.7 53 36-90 8-64 (89)
183 1x4h_A RNA-binding protein 28; 55.5 46 0.0016 22.6 8.3 63 38-102 14-92 (111)
184 1l3k_A Heterogeneous nuclear r 55.4 22 0.00074 27.1 5.6 61 40-102 14-83 (196)
185 1x4e_A RNA binding motif, sing 55.3 22 0.00075 23.0 4.9 55 37-93 3-66 (85)
186 2ad9_A Polypyrimidine tract-bi 55.2 44 0.0015 23.8 6.7 64 38-103 30-99 (119)
187 1u6f_A Tcubp1, RNA-binding pro 54.9 46 0.0016 23.8 7.1 60 41-102 44-113 (139)
188 2dgu_A Heterogeneous nuclear r 54.6 46 0.0016 22.4 8.3 62 39-102 11-74 (103)
189 2qfj_A FBP-interacting repress 54.5 42 0.0014 25.9 7.3 59 42-102 31-99 (216)
190 2e5g_A U6 snRNA-specific termi 54.5 30 0.001 22.9 5.6 60 41-102 10-73 (94)
191 2cjk_A Nuclear polyadenylated 54.3 32 0.0011 25.3 6.3 60 41-102 89-157 (167)
192 1x5t_A Splicing factor 3B subu 53.3 31 0.0011 22.8 5.5 61 40-102 6-77 (96)
193 1x4c_A Splicing factor, argini 52.9 51 0.0018 22.4 7.4 58 41-100 17-77 (108)
194 2jwa_A Receptor tyrosine-prote 52.4 20 0.00068 20.7 3.5 16 15-30 26-41 (44)
195 2d9o_A DNAJ (HSP40) homolog, s 52.2 52 0.0018 22.5 6.5 47 55-102 31-81 (100)
196 2cpy_A RNA-binding protein 12; 52.2 20 0.00067 25.0 4.5 66 35-102 11-85 (114)
197 2do0_A HnRNP M, heterogeneous 52.0 54 0.0018 22.4 7.2 62 39-102 15-85 (114)
198 2adc_A Polypyrimidine tract-bi 51.8 58 0.002 25.7 7.8 61 41-102 36-101 (229)
199 2j76_E EIF-4B, EIF4B, eukaryot 51.8 24 0.00081 23.8 4.7 58 42-102 22-89 (100)
200 1fxl_A Paraneoplastic encephal 50.0 29 0.00099 25.4 5.4 59 42-102 5-73 (167)
201 2e44_A Insulin-like growth fac 49.9 52 0.0018 21.6 9.4 61 40-102 16-83 (96)
202 2dng_A Eukaryotic translation 49.4 24 0.00081 23.9 4.4 66 34-102 10-84 (103)
203 2e5j_A Methenyltetrahydrofolat 49.1 55 0.0019 21.7 8.2 60 41-102 21-85 (97)
204 2xs2_A Deleted in azoospermia- 48.7 12 0.00041 25.4 2.7 59 41-102 11-77 (102)
205 2dnh_A Bruno-like 5, RNA bindi 48.3 59 0.002 21.8 7.6 61 38-100 14-83 (105)
206 1h2v_Z 20 kDa nuclear CAP bind 48.1 66 0.0023 23.5 7.2 63 38-102 38-110 (156)
207 2kt5_A RNA and export factor-b 47.2 70 0.0024 22.3 7.2 60 41-102 37-105 (124)
208 2g4b_A Splicing factor U2AF 65 47.0 53 0.0018 24.1 6.6 63 38-102 93-165 (172)
209 3pgw_S U1-70K; protein-RNA com 46.9 43 0.0015 29.8 6.8 61 40-102 103-173 (437)
210 3md3_A Nuclear and cytoplasmic 46.2 32 0.0011 25.2 5.1 58 43-102 4-70 (166)
211 2cpe_A RNA-binding protein EWS 45.8 30 0.001 23.8 4.6 61 40-102 16-94 (113)
212 1l3k_A Heterogeneous nuclear r 45.5 31 0.0011 26.2 5.1 60 41-102 106-174 (196)
213 3ue2_A Poly(U)-binding-splicin 45.3 33 0.0011 24.3 4.7 65 38-102 19-100 (118)
214 2khc_A Testis-specific RNP-typ 45.3 37 0.0013 23.5 5.0 58 42-101 43-110 (118)
215 2f3j_A RNA and export factor b 44.9 95 0.0032 23.5 7.7 58 43-102 92-158 (177)
216 1b7f_A Protein (SXL-lethal pro 44.7 64 0.0022 23.5 6.7 60 41-102 5-74 (168)
217 2lxi_A RNA-binding protein 10; 44.1 36 0.0012 22.5 4.6 58 43-102 5-74 (91)
218 2cq0_A Eukaryotic translation 43.9 26 0.0009 23.6 3.9 62 39-102 15-86 (103)
219 1qm9_A Polypyrimidine tract-bi 43.8 59 0.002 24.7 6.5 59 43-102 7-70 (198)
220 3zzy_A Polypyrimidine tract-bi 42.8 35 0.0012 24.8 4.5 64 35-100 22-93 (130)
221 2dnr_A Synaptojanin-1; RRM dom 42.0 45 0.0015 22.6 4.6 48 55-102 29-77 (91)
222 2lmi_A GRSF-1, G-rich sequence 41.6 62 0.0021 21.9 5.7 63 38-102 10-83 (107)
223 2dgp_A Bruno-like 4, RNA bindi 41.5 77 0.0026 21.2 8.5 53 39-93 13-74 (106)
224 2hgm_A HNRPF protein, heteroge 40.5 59 0.002 23.3 5.5 62 38-102 41-112 (126)
225 2ghp_A U4/U6 snRNA-associated 40.3 38 0.0013 27.8 5.1 64 38-103 40-110 (292)
226 1ufw_A Synaptojanin 2; RNP dom 40.2 58 0.002 22.2 5.0 47 56-102 39-86 (95)
227 1whv_A Poly(A)-specific ribonu 40.2 28 0.00097 24.0 3.4 45 55-99 29-76 (100)
228 2dha_A FLJ20171 protein; RRM d 40.1 32 0.0011 24.6 4.0 61 39-101 23-95 (123)
229 2cq2_A Hypothetical protein LO 39.8 96 0.0033 21.8 7.0 55 37-93 23-82 (114)
230 1wez_A HnRNP H', FTP-3, hetero 39.7 39 0.0013 23.0 4.3 62 38-102 14-83 (102)
231 2dit_A HIV TAT specific factor 39.5 54 0.0019 22.5 5.1 68 35-102 11-93 (112)
232 1wel_A RNA-binding protein 12; 39.0 26 0.0009 24.7 3.4 62 39-102 25-95 (124)
233 1jmt_A Splicing factor U2AF 35 39.0 69 0.0024 21.8 5.5 40 63-102 49-97 (104)
234 2cjk_A Nuclear polyadenylated 38.8 58 0.002 23.8 5.6 56 43-101 7-71 (167)
235 1wex_A Hypothetical protein (r 38.6 92 0.0031 21.2 8.0 64 38-103 14-83 (104)
236 3r27_A HnRNP L, heterogeneous 37.3 98 0.0033 21.1 6.9 54 38-93 20-76 (100)
237 3q2s_C Cleavage and polyadenyl 36.2 53 0.0018 26.2 5.2 59 42-102 71-141 (229)
238 3v4m_A Splicing factor U2AF 65 35.7 90 0.0031 21.3 5.7 65 38-102 4-88 (105)
239 2dgw_A Probable RNA-binding pr 35.4 83 0.0028 20.3 5.4 62 38-102 9-78 (91)
240 4f02_A Polyadenylate-binding p 35.2 65 0.0022 25.0 5.5 64 37-102 13-86 (213)
241 3pgw_A U1-A; protein-RNA compl 35.1 80 0.0027 25.6 6.3 64 39-102 9-81 (282)
242 4f02_A Polyadenylate-binding p 35.1 69 0.0024 24.9 5.6 60 41-102 105-172 (213)
243 2ek1_A RNA-binding protein 12; 34.8 25 0.00086 23.2 2.6 60 41-102 17-86 (95)
244 2hgn_A Heterogeneous nuclear r 34.8 51 0.0018 24.1 4.5 60 40-102 47-114 (139)
245 3tyt_A Heterogeneous nuclear r 34.8 85 0.0029 24.4 6.1 61 41-102 6-71 (205)
246 2qfj_A FBP-interacting repress 34.7 72 0.0025 24.5 5.7 60 41-102 127-196 (216)
247 3ctr_A Poly(A)-specific ribonu 33.5 22 0.00074 24.7 1.9 39 55-93 19-58 (101)
248 2e5i_A Heterogeneous nuclear r 33.2 78 0.0027 22.6 5.1 56 43-100 29-89 (124)
249 4b19_A PEPA1; toxin, toxin apo 32.5 31 0.0011 18.0 2.0 19 11-29 11-29 (30)
250 2g4b_A Splicing factor U2AF 65 31.1 1.1E+02 0.0037 22.3 6.0 59 42-102 7-79 (172)
251 1wf0_A TDP-43, TAR DNA-binding 30.6 58 0.002 21.0 3.9 49 41-91 7-59 (88)
252 2yh0_A Splicing factor U2AF 65 30.5 68 0.0023 24.2 4.8 60 41-102 116-185 (198)
253 2dnn_A RNA-binding protein 12; 29.7 83 0.0028 21.7 4.7 59 41-102 18-84 (109)
254 1b7f_A Protein (SXL-lethal pro 29.5 1.4E+02 0.0046 21.6 6.3 59 40-100 90-158 (168)
255 2db1_A Heterogeneous nuclear r 29.2 37 0.0013 23.8 2.8 60 41-102 19-89 (118)
256 1fxl_A Paraneoplastic encephal 29.1 1.3E+02 0.0044 21.6 6.1 59 41-101 90-158 (167)
257 2hgl_A HNRPF protein, heteroge 27.5 44 0.0015 24.3 3.0 60 41-102 46-116 (136)
258 3md3_A Nuclear and cytoplasmic 27.4 1.3E+02 0.0044 21.6 5.8 61 40-102 88-158 (166)
259 3pgw_A U1-A; protein-RNA compl 27.3 1.9E+02 0.0064 23.3 7.3 50 42-93 210-263 (282)
260 3sde_A Paraspeckle component 1 26.5 90 0.0031 25.1 5.1 60 41-102 24-87 (261)
261 1fj7_A Nucleolin RBD1, protein 26.1 1.1E+02 0.0039 20.1 4.9 60 41-102 19-86 (101)
262 4gyx_A Type III collagen fragm 25.8 30 0.001 17.4 1.1 11 34-44 4-14 (31)
263 3tht_A Alkylated DNA repair pr 25.6 1.7E+02 0.0058 25.1 6.7 61 33-93 12-75 (345)
264 2fc9_A NCL protein; structure 25.5 83 0.0028 20.8 4.0 65 36-102 12-82 (101)
265 2lx0_A Membrane fusion protein 24.8 67 0.0023 16.2 2.4 13 7-19 4-16 (32)
266 3nmr_A Cugbp ELAV-like family 24.7 1.3E+02 0.0046 21.8 5.5 52 40-93 96-155 (175)
267 2yh0_A Splicing factor U2AF 65 22.5 1.4E+02 0.0049 22.2 5.4 59 42-102 7-79 (198)
268 2cqp_A RNA-binding protein 12; 22.2 57 0.002 21.5 2.6 60 41-102 17-86 (98)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=8.1e-36 Score=277.73 Aligned_cols=260 Identities=20% Similarity=0.312 Sum_probs=199.2
Q ss_pred CCCCCCCCCCCCceecccCCCC--CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccc
Q 040285 30 GSRRLPPGPTPYPVIGNLLELG--DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAI 107 (298)
Q Consensus 30 ~~~~~pPgP~~~PilGnl~~l~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~ 107 (298)
++.++||||++||++||++++. +.+|..+.+|+++||++|++++|+.++||++||++++|+|++++..|++||.....
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~ 84 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATL 84 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHH
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 4457899999999999999985 36889999999999999999999999999999999999999999999999876555
Q ss_pred cccccCCCCcccCCCChhHHHHHHHHHhhcCCh--hHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHH
Q 040285 108 YAHGHHEFGMPWLPVATLWRNLRKICNSHAFSS--RQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLI 185 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~--~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii 185 (298)
..+..++.|+++.++|+.||++||++ +++|+. ..++.+.+.+.++++.+++.|.+. .|+++|+...+..+++|+|
T Consensus 85 ~~~~~~~~gl~~~~~g~~wr~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~t~dvi 161 (494)
T 3swz_A 85 DIASNNRKGIAFADSGAHWQLHRRLA-MATFALFKDGDQKLEKIICQEISTLCDMLATH--NGQSIDISFPVFVAVTNVI 161 (494)
T ss_dssp HHHTTTTCSSSSSCSSHHHHHHHHHH-HHHTTTTSSSTTCHHHHHHHHHHHHHHHHHHT--TTEEECCHHHHHHHHHHHH
T ss_pred HHhccCCCCeEeCCCCHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHc--CCCcccHHHHHHHHHHHHH
Confidence 54444345777777899999999998 677863 346678999999999999998763 4679999999999999999
Q ss_pred HHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 040285 186 SNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQER 265 (298)
Q Consensus 186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 265 (298)
+.++||.+++.. ++....+....+.+........+.+++|+++++|. ...++..+..+.+.+++.++++++++....+
T Consensus 162 ~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 239 (494)
T 3swz_A 162 SLICFNTSYKNG-DPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSD 239 (494)
T ss_dssp HHHHHSCCCCTT-CTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCC-SHHHHHHHHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHcCCcCCCC-CHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999998764 33444444444555555554456778999888863 2345666777788888888888887654333
Q ss_pred CCCCCCCHHHHHhhcccc----------CCCCCCHHhhhhhc
Q 040285 266 DFTESKDMLDALLKICED----------KSVEIDINDIKHLF 297 (298)
Q Consensus 266 ~~~~~~d~l~~lL~~~~~----------~~~~lt~~~i~~~~ 297 (298)
. +.|+++.|+++..+ ++..+++++|.+.+
T Consensus 240 ~---~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 278 (494)
T 3swz_A 240 S---ITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTI 278 (494)
T ss_dssp C---CCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHH
T ss_pred c---hhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHH
Confidence 2 46999999986422 11248888887653
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=273.00 Aligned_cols=265 Identities=19% Similarity=0.306 Sum_probs=187.8
Q ss_pred cCCCCCCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccc
Q 040285 28 KSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAI 107 (298)
Q Consensus 28 ~~~~~~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~ 107 (298)
+.++.+.||||+++|++||++++.++++..+.+|+++||++|++++|+.++|+++||++++++|.+++..|++||.....
T Consensus 4 ~~~~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~ 83 (507)
T 3pm0_A 4 KTSSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASF 83 (507)
T ss_dssp ------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHH
T ss_pred ccCCCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHH
Confidence 44456789999999999999999888999999999999999999999999999999999999999999999999876554
Q ss_pred cccccCCCCcccCCCChhHHHHHHHHHhhcCCh---hH---HhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHH
Q 040285 108 YAHGHHEFGMPWLPVATLWRNLRKICNSHAFSS---RQ---LDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTT 181 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~---~~---l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t 181 (298)
..+. ++.++++..+|+.|+++||++ ++.|+. .. .+.+.+.+.++++.+++.+.+.+.+++++|+.+.+..++
T Consensus 84 ~~~~-~g~~l~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~ 161 (507)
T 3pm0_A 84 RVVS-GGRSMAFGHYSEHWKVQRRAA-HSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAV 161 (507)
T ss_dssp HHGG-GGTCSSSSCSSHHHHHHHHHH-HHHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHH
T ss_pred Hhhc-CCCceEECCCChHHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHH
Confidence 4442 235666777899999999998 555432 22 344889999999999999987654567999999999999
Q ss_pred HHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcc--cHHHHHHHHHHHHHHHHHHHHHHHH
Q 040285 182 LNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQ--GIRRRMTVYFGKMLDVFDRLIDQRL 259 (298)
Q Consensus 182 ~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 259 (298)
+|+|+.++||.+++.. ++....+...+...+.......+.+++|+++++|.. +..+++.+..+.+.+++.+.+++++
T Consensus 162 ~dvi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 240 (507)
T 3pm0_A 162 ANVMSAVCFGCRYSHD-DPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHC 240 (507)
T ss_dssp HHHHHHHHTSCCCCTT-CHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCC-CHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 335556666666666665544556688988887621 2345677778889999999999988
Q ss_pred HhhhcCCCCCCCCHHHHHhhcccc--CC------CCCCHHhhhhhc
Q 040285 260 KQRQERDFTESKDMLDALLKICED--KS------VEIDINDIKHLF 297 (298)
Q Consensus 260 ~~~~~~~~~~~~d~l~~lL~~~~~--~~------~~lt~~~i~~~~ 297 (298)
+..+.+. .+.|+++.|++..++ ++ ..+++++|.+.+
T Consensus 241 ~~~~~~~--~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~ 284 (507)
T 3pm0_A 241 ESLRPGA--APRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATI 284 (507)
T ss_dssp HHCCTTC--CCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHH
T ss_pred hcccccc--CCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHH
Confidence 7665433 247999999965432 11 148999887654
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=1.7e-32 Score=253.85 Aligned_cols=258 Identities=21% Similarity=0.332 Sum_probs=196.4
Q ss_pred cCCCCCCCCCCCCCceecccCCC-CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccc
Q 040285 28 KSGSRRLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDA 106 (298)
Q Consensus 28 ~~~~~~~pPgP~~~PilGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~ 106 (298)
..++.++||||+++|++||++++ .++++..+.+|+++||++|++++|+.++|+++||++++++|.+++..|++|+....
T Consensus 5 ~~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~ 84 (476)
T 3e6i_A 5 TSSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPA 84 (476)
T ss_dssp -----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGG
T ss_pred ccCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCch
Confidence 34456789999999999999999 47889999999999999999999999999999999999999999999999986555
Q ss_pred ccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHH--hHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHH
Q 040285 107 IYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQL--DANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL 184 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~i 184 (298)
...+.. + ++ +..+|+.|+++||++ .+.|+...+ +.+.+.+.++++.+++.|.+. .|+++|+...+..+++|+
T Consensus 85 ~~~~~~-~-~l-~~~~g~~w~~~Rr~~-~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~dv 158 (476)
T 3e6i_A 85 FHAHRD-R-GI-IFNNGPTWKDIRRFS-LTTLRNYGMGKQGNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCNV 158 (476)
T ss_dssp GGGGTT-S-SS-TTCCSTTHHHHHHHH-HHHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHTHHHHHH
T ss_pred hheecC-C-CE-EecCCcHHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCcChHHHHHHHHHHH
Confidence 544422 2 55 446799999999987 455544322 346789999999999999754 467899999999999999
Q ss_pred HHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCC--Ccccccc-ccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040285 185 ISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKP--NLSDFFP-VLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQ 261 (298)
Q Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P-~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 261 (298)
|+.++||.+++.. ++....+...+.+.+...... .+.+.+| ++.++| +..++..+..+.+.+++.+.|+++++.
T Consensus 159 i~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 235 (476)
T 3e6i_A 159 IADILFRKHFDYN-DEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLP--GSHRKVIKNVAEVKEYVSERVKEHHQS 235 (476)
T ss_dssp HHHHHHSCCCCTT-CHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCC-CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999765 334556666666666544321 1234566 555654 345667778888999999999998876
Q ss_pred hhcCCCCCCCCHHHHHhhccccC----CCCCCHHhhhhhc
Q 040285 262 RQERDFTESKDMLDALLKICEDK----SVEIDINDIKHLF 297 (298)
Q Consensus 262 ~~~~~~~~~~d~l~~lL~~~~~~----~~~lt~~~i~~~~ 297 (298)
.+.+. ++|+++.|+.+.+++ +..+|+++|.+.+
T Consensus 236 ~~~~~---~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~ 272 (476)
T 3e6i_A 236 LDPNC---PRDLTDCLLVEMEKEKHSAERLYTMDGITVTV 272 (476)
T ss_dssp CCTTS---CCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHH
T ss_pred CCCCC---CccHHHHHHHHHHhcccCCCCCcCHHHHHHHH
Confidence 54433 369999999765332 2348999887654
No 4
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=255.80 Aligned_cols=256 Identities=19% Similarity=0.319 Sum_probs=196.0
Q ss_pred CCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCC
Q 040285 35 PPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHE 114 (298)
Q Consensus 35 pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~ 114 (298)
+|||+++|++||++++.++++..+.+|+++||+||++++|+.++|+++||++++++|.+++..|++||.......+. ++
T Consensus 18 ~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~~-~~ 96 (495)
T 2hi4_A 18 PPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLIT-DG 96 (495)
T ss_dssp CCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTST-TS
T ss_pred CCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHhc-CC
Confidence 49999999999998887789999999999999999999999999999999999999998888899997544333332 23
Q ss_pred CCcccC-CCChhHHHHHHHHHhhcC---ChhHH---h---HhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHH
Q 040285 115 FGMPWL-PVATLWRNLRKICNSHAF---SSRQL---D---ANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL 184 (298)
Q Consensus 115 ~~~~~~-~~g~~Wk~~Rr~l~~~~f---~~~~l---~---~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~i 184 (298)
.++++. ++|+.|+++||++ +++| +..+. + .+.+.+.++++.+++.|.+.+.+|+++|+.+.+..+++|+
T Consensus 97 ~~l~~~~~~g~~w~~~Rr~~-~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~dv 175 (495)
T 2hi4_A 97 QSLTFSTDSGPVWAARRRLA-QNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVANV 175 (495)
T ss_dssp CCTTTSSCCSHHHHHHHHHH-HHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHH
T ss_pred CCEEEcCCCChHHHHHHHHH-HHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHH
Confidence 466555 4799999999998 5664 43332 2 6899999999999999987544577899999999999999
Q ss_pred HHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040285 185 ISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQE 264 (298)
Q Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 264 (298)
|+.++||.+++.. +++...+.+.+.+++...+...+.+++|+++++|. +..++..+..+.+.+++.++|+++++..+.
T Consensus 176 i~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 253 (495)
T 2hi4_A 176 IGAMCFGQHFPES-SDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPN-PALQRFKAFNQRFLWFLQKTVQEHYQDFDK 253 (495)
T ss_dssp HHHHHHGGGSCTT-CHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHcCCCCCCC-CHHHHHHHHHHHHHHHhcccchHHHHhHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999988754 33445555555555544333335567898877752 234566777888999999999998875433
Q ss_pred CCCCCCCCHHHHHhhcccc----CCCCCCHHhhhhhc
Q 040285 265 RDFTESKDMLDALLKICED----KSVEIDINDIKHLF 297 (298)
Q Consensus 265 ~~~~~~~d~l~~lL~~~~~----~~~~lt~~~i~~~~ 297 (298)
+. ++|+++.|+++..+ ++..+|+++|.+.+
T Consensus 254 ~~---~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 287 (495)
T 2hi4_A 254 NS---VRDITGALFKHSKKGPRASGNLIPQEKIVNLV 287 (495)
T ss_dssp TC---CCSHHHHHHHHHHHCCEETTEECCTHHHHTHH
T ss_pred cc---cccHHHHHHHHhhhccCccccCCCHHHHHHHH
Confidence 22 36999999965321 12359999887654
No 5
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=2.7e-33 Score=260.61 Aligned_cols=253 Identities=15% Similarity=0.165 Sum_probs=191.7
Q ss_pred cCCCCCCCCCCCCCceecccCCC-CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccc
Q 040285 28 KSGSRRLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDA 106 (298)
Q Consensus 28 ~~~~~~~pPgP~~~PilGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~ 106 (298)
..++.++||||++ ++++ .++++..+.+|+++||++|++++|+.++|+++||++++|+|.+++..|++||....
T Consensus 24 ~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~ 97 (496)
T 3qz1_A 24 KLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPS 97 (496)
T ss_dssp -----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTT
T ss_pred hccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcch
Confidence 3455678999987 5566 57899999999999999999999999999999999999999999999999987655
Q ss_pred ccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHH
Q 040285 107 IYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLIS 186 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~ 186 (298)
......+..++++.++|+.|+++||++ ++.|+++.++.+.+.+.++++.+++.|.+. .|+++|+.+.+..+++|+|+
T Consensus 98 ~~~~~~~~~~l~~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~dvi~ 174 (496)
T 3qz1_A 98 YKLVSQRCQDISLGDYSLLWKAHKKLT-RSALLLGTRSSMEPWVDQLTQEFCERMRVQ--AGAPVTIQKEFSLLTCSIIC 174 (496)
T ss_dssp TTTSCTTCCCSSSSCCSHHHHHHHHHH-HHHHHC--CCCHHHHHHHHHHHHHHHHHTT--CSCCCHHHHHHTHHHHHHTT
T ss_pred HHHhcCCCCceEECCCCHHHHHHHHHH-HHHHhhccHhhHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHHHH
Confidence 444333333666655599999999998 678887667789999999999999999762 47799999999999999999
Q ss_pred HHHhccCCCCCCchhHHHHHHHHHHHHHHhCC--CCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040285 187 NTIFSIDLADPTSKTAREFKQTNWGMMEEAGK--PNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQE 264 (298)
Q Consensus 187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 264 (298)
.++||. .+++....+.+.+.+.+..... ..+.+++|+++++|. +..+++.+..+.+.+++.++|++++++.+.
T Consensus 175 ~~~fG~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 249 (496)
T 3qz1_A 175 YLTFGN----KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPN-PGLWRLKQAIENRDHMVEKQLRRHKESMVA 249 (496)
T ss_dssp TTSTTC----CCHHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHhcCC----CCChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999998 2233445555555554433222 124467888888753 334667788889999999999999876544
Q ss_pred CCCCCCCCHHHHHhhccccC----C-CCCCHHhhhhhc
Q 040285 265 RDFTESKDMLDALLKICEDK----S-VEIDINDIKHLF 297 (298)
Q Consensus 265 ~~~~~~~d~l~~lL~~~~~~----~-~~lt~~~i~~~~ 297 (298)
+. ++|+++.|+++..++ + +.+++++|.+.+
T Consensus 250 ~~---~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~ 284 (496)
T 3qz1_A 250 GQ---WRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSV 284 (496)
T ss_dssp SC---CSSSHHHHTTSSTTCCC-----CCCTHHHHHHH
T ss_pred CC---ccchHHHHHHHHHhccccCCcccccHHHHHHHH
Confidence 33 379999999876432 1 259999887653
No 6
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=100.00 E-value=2.1e-32 Score=255.01 Aligned_cols=253 Identities=15% Similarity=0.174 Sum_probs=185.3
Q ss_pred CCCCCCCCCCCCceecccCCCC----CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccc
Q 040285 30 GSRRLPPGPTPYPVIGNLLELG----DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPD 105 (298)
Q Consensus 30 ~~~~~pPgP~~~PilGnl~~l~----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~ 105 (298)
++.+.||||+++|++||++++. +.++..+.+|+++||++|++++|+.++|+++||++++|+|.+ ..|++|+...
T Consensus 42 ~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~ 119 (503)
T 3s79_A 42 EGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSK 119 (503)
T ss_dssp ---CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCH
T ss_pred hccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhh
Confidence 3456899999999999998874 245678899999999999999999999999999999999954 4688887543
Q ss_pred cc-cccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHH
Q 040285 106 AI-YAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL 184 (298)
Q Consensus 106 ~~-~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~i 184 (298)
.. ......+.++++..+|+.|+++||++ +++|+...++.+.+.+.++++.+++.|.+....++++|+.+.+..+++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~v 198 (503)
T 3s79_A 120 LGLQCIGMHEKGIIFNNNPELWKTTRPFF-MKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDT 198 (503)
T ss_dssp HHHHHHTCTTSSSTTCCCHHHHHHHHHHH-HHHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHH
T ss_pred hhhhhhccCCCceeeCCCccHHHHHHHhh-hHhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHH
Confidence 32 22222335666778899999999999 68999999999999999999999998876544466899999999999999
Q ss_pred HHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040285 185 ISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQE 264 (298)
Q Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 264 (298)
++.++||.+++. ++....+.+.+......... .++++.+.++ .++..+..+++.+++.++|+++++..+.
T Consensus 199 i~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 268 (503)
T 3s79_A 199 SNTLFLRIPLDE--SAIVVKIQGYFDAWQALLIK---PDIFFKISWL-----YKKYEKSVKDLKDAIEVLIAEKRRRIST 268 (503)
T ss_dssp HHHHHTCCCCCH--HHHHHHHHHHHHHHHHHTTC---CHHHHHSGGG-----THHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCcccCc--hhHHHHHHHHHHHHHHHhcC---cHHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999988752 21223333333333222211 1122212222 2456677888999999999999876654
Q ss_pred CCC-CCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 265 RDF-TESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 265 ~~~-~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
+.. ....|+++.|+++.++ +.+|+++|.+.+
T Consensus 269 ~~~~~~~~d~l~~ll~~~~~--~~l~~~~i~~~~ 300 (503)
T 3s79_A 269 EEKLEECMDFATELILAEKR--GDLTRENVNQCI 300 (503)
T ss_dssp CTTTTTTCCHHHHHHHHHHT--TSSCHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhccc--CCCCHHHHHHHH
Confidence 321 0235999999986542 459999987654
No 7
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=100.00 E-value=4.2e-32 Score=252.11 Aligned_cols=259 Identities=20% Similarity=0.286 Sum_probs=197.4
Q ss_pred CCCCCCCCCCCCceecccCCCC-CC--chHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccc
Q 040285 30 GSRRLPPGPTPYPVIGNLLELG-DK--PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDA 106 (298)
Q Consensus 30 ~~~~~pPgP~~~PilGnl~~l~-~~--~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~ 106 (298)
++.++||||+++|++||++++. .. ++..+.+|+++||++|++++|+.++|+++||++++++|.+++..|++||....
T Consensus 9 ~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 9 RPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp ---CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 3456899999999999998874 33 88999999999999999999999999999999999999998888999875433
Q ss_pred ccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHH--hHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHH
Q 040285 107 IYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQL--DANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNL 184 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~i 184 (298)
...+.. +.++++..+|+.|+++||++ +++|++..+ +.+.+.+.++++.+++.|.+. +|+++|+.+.+..+++|+
T Consensus 89 ~~~~~~-~~~~~~~~~g~~w~~~R~~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~v 164 (481)
T 3czh_A 89 FMKMTK-MGGLLNSRYGRGWVDHRRLA-VNSFRYFGYGQKSFESKILEETKFFNDAIETY--KGRPFDFKQLITNAVSNI 164 (481)
T ss_dssp HHHHHT-TCSSTTCCSSHHHHHHHHHH-HHHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT--TTCCBCCHHHHHHHHHHH
T ss_pred HHhhcC-CCCeEeCCCChHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc--CCCCcCHHHHHHHHHHHH
Confidence 333322 23555567899999999998 678875433 578999999999999999753 356899999999999999
Q ss_pred HHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCC--ccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040285 185 ISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPN--LSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQR 262 (298)
Q Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 262 (298)
|+.++||.+++.. +++..++.+.+.+.+....... +.+++|+++++|. ...++..+..+.+.+++.++|++++++.
T Consensus 165 i~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 242 (481)
T 3czh_A 165 TNLIIFGERFTYE-DTDFQHMIELFSENVELAASASVFLYNAFPWIGILPF-GKHQQLFRNAAVVYDFLSRLIEKASVNR 242 (481)
T ss_dssp HHHHHHSSCCCTT-CHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSS-SHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCCC-CHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988753 3345566666666665443211 3457888776652 2345667778889999999999988654
Q ss_pred hcCCCCCCCCHHHHHhhcccc---C-CCCCCHHhhhhhc
Q 040285 263 QERDFTESKDMLDALLKICED---K-SVEIDINDIKHLF 297 (298)
Q Consensus 263 ~~~~~~~~~d~l~~lL~~~~~---~-~~~lt~~~i~~~~ 297 (298)
+++. ++|+++.|+++.++ + +..+|+++|.+.+
T Consensus 243 ~~~~---~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~ 278 (481)
T 3czh_A 243 KPQL---PQHFVDAYLDEMDQGKNDPSSTFSKENLIFSV 278 (481)
T ss_dssp CTTC---CSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHH
T ss_pred CCCc---hHHHHHHHHHHHHhcccCccccccHHHHHHHH
Confidence 3222 36999999976432 1 2359999988754
No 8
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=100.00 E-value=1.3e-31 Score=247.93 Aligned_cols=261 Identities=17% Similarity=0.259 Sum_probs=186.4
Q ss_pred CCCCCCCCCCCCCceecccCCCC-CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccc
Q 040285 29 SGSRRLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAI 107 (298)
Q Consensus 29 ~~~~~~pPgP~~~PilGnl~~l~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~ 107 (298)
.++.++||||++||+|||++++. ++++..+.+|+++|||||++++|+.++|+|+||++++|+|++++..|++||.....
T Consensus 6 ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~ 85 (479)
T 3tbg_A 6 SSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85 (479)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG
T ss_pred CCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH
Confidence 34457999999999999999984 78899999999999999999999999999999999999999999999999876666
Q ss_pred cccccC--CCCcccCCCChhHHHHHHHHHhhcCChhHHh--HhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHH
Q 040285 108 YAHGHH--EFGMPWLPVATLWRNLRKICNSHAFSSRQLD--ANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLN 183 (298)
Q Consensus 108 ~~~~~~--~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~--~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ 183 (298)
..+..+ ..++++..+|+.|+++|+++ ++.|+...+. .+...+......+...+... .++++|+...+..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 162 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAWREQRRFS-VSTLRNLGLGKKSLEQWVTEEAACLCAAFANH--SGRPFRPNGLLDKAVSN 162 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHHHHHHHHH-HHHHHHTTSTTCHHHHHHHHHHHHHHHHHHTT--TTCCBCTHHHHHHHHHH
T ss_pred HHhccCCCCCceeeCCCCHHHHHHHHHH-HHHhcchhhhHHHHHHHHHHHHHHHHHHHHhc--cCCcccHHHHHHHHHHH
Confidence 554332 34566778899999999998 5666654443 35566666777776666543 46789999999999999
Q ss_pred HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCC--CccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040285 184 LISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKP--NLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQ 261 (298)
Q Consensus 184 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 261 (298)
+++.++||.+++..++ ....+.............. .....+|+..++ ....++.....+...+.+.+.++++.+.
T Consensus 163 ~~~~~~fg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
T 3tbg_A 163 VIASLTCGRRFEYDDP-RFLRLLDLAQEGLKEESGFLREVLNAVPVLLHI--PALAGKVLRFQKAFLTQLDELLTEHRMT 239 (479)
T ss_dssp HHHHHHHSCCCCTTCH-HHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGS--HHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCcccccch-hhhhhhhhhhhhhhhhhhhhhhhhcccchhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987633 4444444444443332210 011123333332 2233445556667777788888777765
Q ss_pred hhcCCCCCCCCHHHHHhhcccc----CCCCCCHHhhhhhc
Q 040285 262 RQERDFTESKDMLDALLKICED----KSVEIDINDIKHLF 297 (298)
Q Consensus 262 ~~~~~~~~~~d~l~~lL~~~~~----~~~~lt~~~i~~~~ 297 (298)
.+... .++|+++.++..... ++..+|++++.+.+
T Consensus 240 ~~~~~--~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 277 (479)
T 3tbg_A 240 WDPAQ--PPRDLTEAFLAEMEKAKGNPESSFNDENLRIVV 277 (479)
T ss_dssp CCTTS--CCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHH
T ss_pred hhccc--ccchhhhhhhhhhhhcccCCccchhhHHHHHHH
Confidence 54433 346888877654321 23459999988764
No 9
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=100.00 E-value=1.5e-31 Score=248.00 Aligned_cols=254 Identities=19% Similarity=0.322 Sum_probs=196.1
Q ss_pred CCCCCCCCCceecccCCC-CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccc
Q 040285 33 RLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHG 111 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~ 111 (298)
+.||||+++|++||++++ .++++..+.+|+++||++|++++|+.++|+++||+++++||.+++..|++|+.......+.
T Consensus 10 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~ 89 (476)
T 2fdv_A 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVF 89 (476)
T ss_dssp BCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHHH
T ss_pred CCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhhc
Confidence 579999999999999998 4788999999999999999999999999999999999999998888899887543333222
Q ss_pred cCCCCcccCCCChhHHHHHHHHHhhcCChhHH--hHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHH
Q 040285 112 HHEFGMPWLPVATLWRNLRKICNSHAFSSRQL--DANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTI 189 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~ 189 (298)
. +.++++ .+|+.|+++||++ ++.|++..+ +.+.+.+.++++.+++.|.+. .|+++|+.+.+..+++++|+.++
T Consensus 90 ~-~~~l~~-~~g~~~~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi~~~~ 164 (476)
T 2fdv_A 90 K-GYGVVF-SNGERAKQLRRFS-IATLRDFGVGKRGIEERIQEEAGFLIDALRGT--GGANIDPTFFLSRTVSNVISSIV 164 (476)
T ss_dssp T-TCSSSS-CCHHHHHHHHHHH-HHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHHHHHH
T ss_pred C-CCCeEe-cCchHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHHHHHH
Confidence 2 245544 5799999999998 678877655 688999999999999999763 35689999999999999999999
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhCCC--Cccccccc-cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 040285 190 FSIDLADPTSKTAREFKQTNWGMMEEAGKP--NLSDFFPV-LENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERD 266 (298)
Q Consensus 190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 266 (298)
||.+++.. +++...+.+.+.+.+...... .+.+++|+ ++++| +..++..+..+.+.+++.++|++++++.+.+.
T Consensus 165 fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 241 (476)
T 2fdv_A 165 FGDRFDYK-DKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLP--GPQQQAFQLLQGLEDFIAKKVEHNQRTLDPNS 241 (476)
T ss_dssp HSSCCCTT-CHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTS
T ss_pred cCCcCCCC-CHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99998754 334556666666655433321 12346776 55554 33456677788899999999998876543222
Q ss_pred CCCCCCHHHHHhhcccc----CCCCCCHHhhhhhc
Q 040285 267 FTESKDMLDALLKICED----KSVEIDINDIKHLF 297 (298)
Q Consensus 267 ~~~~~d~l~~lL~~~~~----~~~~lt~~~i~~~~ 297 (298)
++|+++.|+++.++ ++..+|+++|.+.+
T Consensus 242 ---~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 273 (476)
T 2fdv_A 242 ---PRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTT 273 (476)
T ss_dssp ---CCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHH
T ss_pred ---CccHHHHHHHHHHhcccCccccccHHHHHHHH
Confidence 36999999976432 12359999987654
No 10
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.98 E-value=5.5e-33 Score=257.86 Aligned_cols=254 Identities=17% Similarity=0.220 Sum_probs=178.5
Q ss_pred CCCCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhC-CccccccCccccccc
Q 040285 31 SRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQ-DTSFCNRTIPDAIYA 109 (298)
Q Consensus 31 ~~~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~-~~~f~~Rp~~~~~~~ 109 (298)
+++.+|||+++|++||++++.++++..+.+|+++||++|++++|+.++|+++||++++++|.++ ...|++|+.......
T Consensus 12 k~~~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~ 91 (485)
T 3nxu_A 12 KKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF 91 (485)
T ss_dssp HHHTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGG
T ss_pred hhCCCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccccccc
Confidence 3456999999999999999877889999999999999999999999999999999999999988 678998875443332
Q ss_pred cccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHH
Q 040285 110 HGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTI 189 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~ 189 (298)
. . .++ +..+|+.|+++||++ +++|++++++.+.+.+.++++.+++.|.+.+..|+++|+.+.+..+++|+|+.++
T Consensus 92 ~-~--~~l-~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~ 166 (485)
T 3nxu_A 92 M-K--SAI-SIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTS 166 (485)
T ss_dssp G-G--GST-TTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHH
T ss_pred c-c--cCc-cccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHH
Confidence 2 1 243 556899999999998 7899999999999999999999999998765557899999999999999999999
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhCCC---Cccccccccc----cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040285 190 FSIDLADPTSKTAREFKQTNWGMMEEAGKP---NLSDFFPVLE----NLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQR 262 (298)
Q Consensus 190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~l~----~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 262 (298)
||.+++..++ ....+.+.+.+.+...... ...+.+|++. +++.... ..+..+.+.+++.++++++.+..
T Consensus 167 fG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 242 (485)
T 3nxu_A 167 FGVNIDSLNN-PQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVF---PREVTNFLRKSVKRMKESRLEDT 242 (485)
T ss_dssp HSCCCCGGGC-TTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSS---CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCccccccC-CCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhc---hHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999876422 1223333333221110000 0112334322 1111110 11223334445555554443221
Q ss_pred hcCCCCCCCCHHHHHhhccccC----CCCCCHHhhhhhc
Q 040285 263 QERDFTESKDMLDALLKICEDK----SVEIDINDIKHLF 297 (298)
Q Consensus 263 ~~~~~~~~~d~l~~lL~~~~~~----~~~lt~~~i~~~~ 297 (298)
.. .+.|+++.|+++.+++ +..+|++++.+.+
T Consensus 243 --~~--~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~ 277 (485)
T 3nxu_A 243 --QK--HRVDFLQLMIDSQNSKETESHKALSDLELVAQS 277 (485)
T ss_dssp -------CCCHHHHHHHHHC--------CCCHHHHHHHH
T ss_pred --CC--CcccHHHHHHHhhhccccccccCCCHHHHHHHH
Confidence 11 2469999999875432 2359999887654
No 11
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.98 E-value=2.9e-32 Score=250.44 Aligned_cols=254 Identities=14% Similarity=0.221 Sum_probs=198.9
Q ss_pred CCCCCCCCC-CceecccCCCCCCchHHHHHHHHHhC-CceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccc
Q 040285 32 RRLPPGPTP-YPVIGNLLELGDKPHKSLAKLAKIHG-PIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYA 109 (298)
Q Consensus 32 ~~~pPgP~~-~PilGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~ 109 (298)
.++||||++ +|++||++++.++++..+.+|+++|| ++|++++|+.++||++||++++++|.+++..|++|+.......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 468999665 99999999887789999999999999 9999999999999999999999999999999999875444433
Q ss_pred cccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHH-HHHHHhhCCcceehHHHHHHHHHHHHHHH
Q 040285 110 HGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLA-YVQENCRAGTAIHIGQAAFDTTLNLISNT 188 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~-~l~~~~~~~~~vd~~~~~~~~t~~ii~~~ 188 (298)
+ .+ .++.+..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++ .+.+ .++++|+.+.+..+++++++.+
T Consensus 82 ~-~g-~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~vd~~~~~~~~~~~~i~~~ 155 (450)
T 3gw9_A 82 V-FG-EGVAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDK---DEGEINLLEDCSTMIINTACQC 155 (450)
T ss_dssp H-HC-TTSGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCS---SEEEEEHHHHHHHHHHHHHHHH
T ss_pred H-hc-CCcccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcccHHHHHHHHHHHHHHHH
Confidence 3 22 3555666899999999998 7899999999999999999999988 5532 3458999999999999999999
Q ss_pred HhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040285 189 IFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFT 268 (298)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 268 (298)
+||.+++... +...+.+.+..+..... ...+++|+++++|. +..++..+..+.+.+++.++|+++++.......
T Consensus 156 ~fG~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~- 229 (450)
T 3gw9_A 156 LFGEDLRKRL--DARRFAQLLAKMESSLI--PAAVFLPILLKLPL-PQSARCHEARTELQKILSEIIIARKEEEVNKDS- 229 (450)
T ss_dssp HSCHHHHHHS--CHHHHHHHHHHHHHTCC--GGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-
T ss_pred HcCcchhhhh--hhHHHHHHHHHHHhccc--cchhcccchhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-
Confidence 9998775421 13455555555433222 23457888888764 334566777888999999999988865422222
Q ss_pred CCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 269 ESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 269 ~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.+.|+++.|+++.++++..+++++|.+.+
T Consensus 230 ~~~d~l~~ll~~~~~~~~~l~~~~i~~~~ 258 (450)
T 3gw9_A 230 STSDLLSGLLSAVYRDGTPMSLHEVCGMI 258 (450)
T ss_dssp CCCSHHHHHHHCBCTTSCBCCHHHHHHHH
T ss_pred ccchHHHHHHHhhccCCCCCCHHHHHHHH
Confidence 34799999998765545569999987654
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.98 E-value=2.8e-31 Score=246.17 Aligned_cols=254 Identities=19% Similarity=0.311 Sum_probs=184.0
Q ss_pred CCCCCCCCCceecccCCC-CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccc
Q 040285 33 RLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHG 111 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~ 111 (298)
+.||||+++|++||++++ .++++..+.+|+++||++|++++|+.++|+++||++++++|.+++..|++|+.........
T Consensus 11 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 90 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERAN 90 (477)
T ss_dssp BCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTTT
T ss_pred CCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhcc
Confidence 579999999999999988 4678899999999999999999999999999999999999998888899987543333222
Q ss_pred cCCCCcccCCCChhHHHHHHHHHhhcCChh--HHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHH
Q 040285 112 HHEFGMPWLPVATLWRNLRKICNSHAFSSR--QLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTI 189 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~ 189 (298)
. +.++++ .+|+.|+++||++ ++.|++. .++.+.+.+.++++.+++.|.+. .|+++|+.+.+..+++|+|++++
T Consensus 91 ~-~~~l~~-~~g~~w~~~Rr~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi~~~~ 165 (477)
T 1r9o_A 91 R-GFGIVF-SNGKKWKEIRRFS-LMTLRNFGMGKRSIEDRVQEEARCLVEELRKT--KASPCDPTFILGCAPCNVICSII 165 (477)
T ss_dssp C-TTSSTT-CCHHHHHHHHHHH-HHHHTTSSSCSSCHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHHHHHHHHHHHHH
T ss_pred C-CCceEe-cCChHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHHHHHH
Confidence 2 245544 5899999999998 6778765 44678999999999999999753 35689999999999999999999
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhCC--CCccccccc-cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 040285 190 FSIDLADPTSKTAREFKQTNWGMMEEAGK--PNLSDFFPV-LENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERD 266 (298)
Q Consensus 190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 266 (298)
||.+++.. +++...+.+.+.+.+..... ..+.+++|+ ++++| ...++..+..+.+.+++.++|++++++.+.+.
T Consensus 166 fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~lp--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 242 (477)
T 1r9o_A 166 FHKRFDYK-DQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFP--GTHNKLLKNVAFMKSYILEKVKEHQESMDMNN 242 (477)
T ss_dssp HSCCCCTT-CHHHHHHHHHHHHHHHHHTCCBC-------CCCSCCT--TCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred ccCcCCCC-CHHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99998754 32445555555555543221 123346776 44443 22355667778899999999999887543222
Q ss_pred CCCCCCHHHHHhhcccc----CCCCCCHHhhhhhc
Q 040285 267 FTESKDMLDALLKICED----KSVEIDINDIKHLF 297 (298)
Q Consensus 267 ~~~~~d~l~~lL~~~~~----~~~~lt~~~i~~~~ 297 (298)
++|+++.|+.+.++ ++..+|+++|.+.+
T Consensus 243 ---~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 274 (477)
T 1r9o_A 243 ---PQDFIDCFLMKMEKEKHNQPSEFTIESLENTA 274 (477)
T ss_dssp ---CCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHH
T ss_pred ---chHHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Confidence 36999999965321 12359999987754
No 13
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.98 E-value=2.3e-31 Score=246.78 Aligned_cols=255 Identities=17% Similarity=0.300 Sum_probs=190.1
Q ss_pred CCCCCCCCCCceecccCCC-CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccccccc
Q 040285 32 RRLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAH 110 (298)
Q Consensus 32 ~~~pPgP~~~PilGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~ 110 (298)
.+.||||+++|++||++++ .++++..+.+|+++||++|++++|+.++|+++||+++++||.+++..|++|+.......+
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 1po5_A 9 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI 88 (476)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSC
T ss_pred CCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhh
Confidence 3679999999999999998 578999999999999999999999999999999999999999888889988754333333
Q ss_pred ccCCCCcccCCCChhHHHHHHHHHhhcCChh--HHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHH
Q 040285 111 GHHEFGMPWLPVATLWRNLRKICNSHAFSSR--QLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNT 188 (298)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~ 188 (298)
.. +.++++ .+|+.|+++||++ ++.|++. .++.+.+.+.++++.+++.|.+. .|+++|+.+.+..+++++|+.+
T Consensus 89 ~~-~~~l~~-~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~vi~~~ 163 (476)
T 1po5_A 89 FQ-GYGVIF-ANGERWRALRRFS-LATMRDFGMGKRSVEERIQEEARCLVEELRKS--KGALLDNTLLFHSITSNIICSI 163 (476)
T ss_dssp CS-SCCCCC-SSHHHHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHHHHH
T ss_pred cC-CCceEe-cCCcHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHHHHHH
Confidence 22 245544 5899999999998 6777765 45678999999999999999764 3678999999999999999999
Q ss_pred HhccCCCCCCchhHHHHHHHHHHHHHHhCCC--Cccccccc-cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 040285 189 IFSIDLADPTSKTAREFKQTNWGMMEEAGKP--NLSDFFPV-LENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQER 265 (298)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 265 (298)
+||.+++.. +++...+.+.+.+.+...... .+.+++|+ ++++| ...++..+..+.+.+++.++|++++++.+.+
T Consensus 164 ~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 240 (476)
T 1po5_A 164 VFGKRFDYK-DPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFP--GTHRQIYRNLQEINTFIGQSVEKHRATLDPS 240 (476)
T ss_dssp HHSSCCCTT-CHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSS--CSHHHHHHHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HcCCCCCCC-CHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999998754 323334433333333211110 12335675 44554 2235666778889999999999988654322
Q ss_pred CCCCCCCHHHHHhhcccc----CCCCCCHHhhhhhc
Q 040285 266 DFTESKDMLDALLKICED----KSVEIDINDIKHLF 297 (298)
Q Consensus 266 ~~~~~~d~l~~lL~~~~~----~~~~lt~~~i~~~~ 297 (298)
. ++|+++.|+.+.++ ++..+|+++|.+.+
T Consensus 241 ~---~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 273 (476)
T 1po5_A 241 N---PRDFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273 (476)
T ss_dssp S---CCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHH
T ss_pred C---cccHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Confidence 2 36999999965422 12348888887654
No 14
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.97 E-value=7.6e-31 Score=242.98 Aligned_cols=256 Identities=18% Similarity=0.294 Sum_probs=190.5
Q ss_pred ccCCCCCCCCCCCCCceecccCCCC-----CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCcccccc
Q 040285 27 FKSGSRRLPPGPTPYPVIGNLLELG-----DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR 101 (298)
Q Consensus 27 ~~~~~~~~pPgP~~~PilGnl~~l~-----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~R 101 (298)
...++.+.+|||+++|++||++++. +++|..+.+|+++||++|++++|+.++|+++||++++++|.+ ...|++|
T Consensus 18 ~~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~-~~~~~~r 96 (482)
T 3k9v_A 18 GETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRT-ESAHPQR 96 (482)
T ss_dssp -CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHT-CCSSCCC
T ss_pred cccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHh-cCCCCCC
Confidence 4445566799999999999998871 357899999999999999999999999999999999999988 4679988
Q ss_pred Cccccc---cccccCCCCcccCCCChhHHHHHHHHHhhc-CChhHHhHhHHHHHHHHHHHHHHHHHHhh-CCcceehHHH
Q 040285 102 TIPDAI---YAHGHHEFGMPWLPVATLWRNLRKICNSHA-FSSRQLDANQHLRRKKIQDLLAYVQENCR-AGTAIHIGQA 176 (298)
Q Consensus 102 p~~~~~---~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~-f~~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~~vd~~~~ 176 (298)
+..... ......+.++ +..+|+.|+++||++ ++. ++++.++.+.+.+.++++.+++.|.+.+. .|+++|+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l-~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~ 174 (482)
T 3k9v_A 97 LEIKPWKAYRDHRNEAYGL-MILEGQEWQRVRSAF-QKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSE 174 (482)
T ss_dssp CCCHHHHHHHHHHTCCCCT-TTCCHHHHHHHHHHH-HHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHH
T ss_pred CCchHHHHHHHhcCCCCCc-eeCCCchHHHHHHHh-hHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 754322 1121123454 556899999999999 555 58888999999999999999999987653 4678999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCc---hhHHHHHHHHHHHHHHhCCCCcccccc--ccccCCcccHHHHHHHHHHHHHHHH
Q 040285 177 AFDTTLNLISNTIFSIDLADPTS---KTAREFKQTNWGMMEEAGKPNLSDFFP--VLENLDLQGIRRRMTVYFGKMLDVF 251 (298)
Q Consensus 177 ~~~~t~~ii~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P--~l~~l~~~~~~~~~~~~~~~~~~~~ 251 (298)
+..+++|+|+.++||.+++..++ ....++.+.+...+..... ..++| ++.+++. ...++..+..+.+.+++
T Consensus 175 ~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~~ 250 (482)
T 3k9v_A 175 LNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGK---MMVTPVELHKRLNT-KVWQAHTLAWDTIFKSV 250 (482)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHHTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999854321 2345677777666554332 11333 2233322 22345566677788888
Q ss_pred HHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 252 DRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 252 ~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.++|++++++...+. ..|+++.++... .+|+++|.+.+
T Consensus 251 ~~~i~~r~~~~~~~~---~~d~l~~ll~~~-----~l~~~ei~~~~ 288 (482)
T 3k9v_A 251 KPCIDNRLQRYSQQP---GADFLCDIYQQD-----HLSKKELYAAV 288 (482)
T ss_dssp HHHHHHHHHHTTTCT---TSCHHHHHHHHT-----CCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC---chHHHHHHHhcc-----CCCHHHHHHHH
Confidence 899998886554332 368998888642 38888887654
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.97 E-value=2.4e-31 Score=245.61 Aligned_cols=247 Identities=13% Similarity=0.199 Sum_probs=186.8
Q ss_pred CCCCCCCCCC-CceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccc-c
Q 040285 31 SRRLPPGPTP-YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAI-Y 108 (298)
Q Consensus 31 ~~~~pPgP~~-~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~-~ 108 (298)
+.+.||||++ +|+|||++++.++++..+.+|+++|||||++++|+.++|+++||+++++++.+++..|++|+..... .
T Consensus 9 g~~~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~ 88 (461)
T 3ld6_A 9 GVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTT 88 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHH
T ss_pred CCCCCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhh
Confidence 3456788775 9999999998888999999999999999999999999999999999999999999999988643322 2
Q ss_pred ccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHH
Q 040285 109 AHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNT 188 (298)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~ 188 (298)
.+ .| .++++..+|+.|+++|+++ +++|+...++.+.+.+.++++.+++.|.+ +.++|+.+.+..+++++++.+
T Consensus 89 ~~-~g-~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~ 161 (461)
T 3ld6_A 89 PV-FG-KGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTASHC 161 (461)
T ss_dssp HH-HC-TTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHHHH
T ss_pred cc-CC-CccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHH
Confidence 22 22 4666778899999999998 78999999999999999999998887743 457899999999999999999
Q ss_pred HhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040285 189 IFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFT 268 (298)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 268 (298)
+||.+++...++....+. ..+..... .....+|. ++|.+ ...+..+..+++.+++.+.|+++++.. .
T Consensus 162 ~fG~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~i~~r~~~~---~-- 228 (461)
T 3ld6_A 162 LHGKEIRSQLNEKVAQLY---ADLDGGFS--HAAWLLPG--WLPLP-SFRRRDRAHREIKDIFYKAIQKRRQSQ---E-- 228 (461)
T ss_dssp HTCHHHHHTCCHHHHHHH---HHHHTTSS--HHHHHSCT--TSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCC---C--
T ss_pred HcCcchhhhhhhhhhhhh---hhhhhhhh--hHHHhhhh--hccCc-HHHHHHHHHHHHHHHHHHHHHHHHhcC---C--
Confidence 999887654332222222 22211111 11113332 34332 334566777888888888888776432 2
Q ss_pred CCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 269 ESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 269 ~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.++|+++.|+++..+++..+|+++|.+.+
T Consensus 229 ~~~d~l~~ll~~~~~~~~~ls~~ei~~~~ 257 (461)
T 3ld6_A 229 KIDDILQTLLDATYKDGRPLTDDEVAGML 257 (461)
T ss_dssp CCCSHHHHHHTCBCTTSCBCCHHHHHHHH
T ss_pred CCcchhhhhHHhhhcccCCCCHHHHHHHH
Confidence 34799999999877666679999988754
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.96 E-value=1e-28 Score=228.67 Aligned_cols=252 Identities=19% Similarity=0.200 Sum_probs=180.8
Q ss_pred CCCCCCCCCceecccCCCC-CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccc
Q 040285 33 RLPPGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHG 111 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~ 111 (298)
+.+|||+++|++||++++. ++++..+.+|+++||++|++++|+.++|+++||++++++|.+ ..|+ ++.......+.
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~-~~~~~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFD-KNLSQALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEE-ECCCHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcC-cCchhHHHHHH
Confidence 4689999999999999884 578899999999999999999999999999999999999964 2463 32211111110
Q ss_pred -cCCCCcccC-CCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHH
Q 040285 112 -HHEFGMPWL-PVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTI 189 (298)
Q Consensus 112 -~~~~~~~~~-~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~ 189 (298)
..+.++.+. .+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+.. .++++|+.+.+..+++|+|+.++
T Consensus 80 ~~~~~~l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~~~~vi~~~~ 157 (470)
T 2ij2_A 80 DFAGDGLFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERLN-ADEHIEVPEDMTRLTLDTIGLCG 157 (470)
T ss_dssp HHHTTSGGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTCC-TTCCEEHHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEHHHHHHHHHHHHHHHHH
Confidence 112355444 4899999999998 7899999999999999999999999987532 35689999999999999999999
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 040285 190 FSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTE 269 (298)
Q Consensus 190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 269 (298)
||.+++...+++...+...+...+........ ..|++.+++ ....++..+..+.+.+++.++|+++++.. . .
T Consensus 158 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~---~--~ 229 (470)
T 2ij2_A 158 FNYRFNSFYRDQPHPFITSMVRALDEAMNKLQ--RANPDDPAY-DENKRQFQEDIKVMNDLVDKIIADRKASG---E--Q 229 (470)
T ss_dssp HSCCCCGGGCSSCCHHHHHHHHHHHHHHHTC-----CTTSGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--C
T ss_pred cCCcccccccCCCCHHHHHHHHHHHHHHHHHh--hhhhHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--C
Confidence 99988642111223444444444432211010 113333332 12234566677788899999999887532 2 2
Q ss_pred CCCHHHHHhhccccC-CCCCCHHhhhhhc
Q 040285 270 SKDMLDALLKICEDK-SVEIDINDIKHLF 297 (298)
Q Consensus 270 ~~d~l~~lL~~~~~~-~~~lt~~~i~~~~ 297 (298)
++|+++.|+++.+++ +..+|+++|.+.+
T Consensus 230 ~~dll~~ll~~~~~~~~~~ls~~ei~~~~ 258 (470)
T 2ij2_A 230 SDDLLTHMLNGKDPETGEPLDDENIRYQI 258 (470)
T ss_dssp CSSHHHHHHHCCCTTTCCCCCHHHHHHHH
T ss_pred chhHHHHHHhccCcccCCCCCHHHHHHHH
Confidence 369999999876432 3459999987654
No 17
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.96 E-value=1.6e-29 Score=233.22 Aligned_cols=249 Identities=13% Similarity=0.209 Sum_probs=183.8
Q ss_pred CCCCCCCCC-CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccc-c
Q 040285 29 SGSRRLPPG-PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPD-A 106 (298)
Q Consensus 29 ~~~~~~pPg-P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~-~ 106 (298)
.++.++||| |+++|++||++++.++++..+.+|+++||++|++++|+.++||++++++++++|.++...|+.++... .
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~ 86 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRL 86 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHh
Confidence 345678999 99999999999887789999999999999999999999999999999999999999887777654221 1
Q ss_pred ccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHH
Q 040285 107 IYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLIS 186 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~ 186 (298)
...+ . +.++.+..+|+.|+++||++ ++.|+++.++.+.+.+.++++.+++.|.+ +..+|+.+.+..+++++++
T Consensus 87 ~~~~-~-g~g~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~~~ 159 (461)
T 3i3k_A 87 TTPV-F-GKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTAS 159 (461)
T ss_dssp HHHH-H-CTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHH
T ss_pred hhhh-c-CCeeeeCCCcHHHHHHHHHH-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCHHHHHHHHHHHHHH
Confidence 1222 2 24556666899999999998 67899999999999999999999888743 3468999999999999999
Q ss_pred HHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 040285 187 NTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERD 266 (298)
Q Consensus 187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 266 (298)
.++||.++....+ ..+.+.+..+..... .....+| .|+|.. ..++..+..+.+.+++.+.|+++++.. .
T Consensus 160 ~~~~G~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~P--~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~---~ 228 (461)
T 3i3k_A 160 HCLHGKEIRSQLN---EKVAQLYADLDGGFS--HAAWLLP--GWLPLP-SFRRRDRAHREIKDIFYKAIQKRRQSQ---E 228 (461)
T ss_dssp HHHTCHHHHHTCC---HHHHHHHHHHHTTSS--HHHHHSC--TTSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHccHhhhhHHH---HHHHHHHHHHHhccc--cchhhcc--cccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcc---c
Confidence 9999987654322 122222222221111 1112344 344432 345566778888889988888876432 2
Q ss_pred CCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 267 FTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 267 ~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.+.|+++.|+++.++++..+|+++|.+.+
T Consensus 229 --~~~d~l~~ll~~~~~~~~~l~~~~i~~~~ 257 (461)
T 3i3k_A 229 --KIDDILQTLLDATYKDGRPLTDDEVAGML 257 (461)
T ss_dssp --CCCSHHHHHHTCBCTTSCBCCHHHHHHHH
T ss_pred --ccccHHHHHHHhhhccCCCCCHHHHHHHH
Confidence 24699999998775545569999987654
No 18
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.96 E-value=3.5e-28 Score=224.23 Aligned_cols=245 Identities=13% Similarity=0.165 Sum_probs=166.6
Q ss_pred CCCCC-CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccc
Q 040285 33 RLPPG-PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHG 111 (298)
Q Consensus 33 ~~pPg-P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~ 111 (298)
+.||| |+++|++||++++.++++..+.+|+++||++|++++|+.++++++||++++++|.+++..|++++.......+
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~- 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI- 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH-
T ss_pred CCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh-
Confidence 57998 8899999999888778999999999999999999999999999999999999999887888888644322222
Q ss_pred cCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhc
Q 040285 112 HHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFS 191 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG 191 (298)
.+ .++ + .+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|. .++++|+.+.+..+++++|+.++||
T Consensus 83 ~g-~~~-~-~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~----~~~~vd~~~~~~~~~~~vi~~~~fG 154 (455)
T 2cib_A 83 FG-EGV-V-FDASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWG----EAGEIDLLDFFAELTIYTSSACLIG 154 (455)
T ss_dssp HC------------------------CCHHHHHHHHHHHHHHHHHHHTTCC----SEEEEEHHHHHHHHHHHHHHHHHTC
T ss_pred cC-Ccc-c-cCcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhC----CCCcEeHHHHHHHHHHHHHHHHHcC
Confidence 22 233 3 4699999999998 7899999999999999999999988763 2457999999999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 040285 192 IDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESK 271 (298)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 271 (298)
.+++...+ .++.+.+..+..... .+..++|+ ++. +..++..+..+.+.+++.++|+++++...... .++
T Consensus 155 ~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~p~---l~~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~--~~~ 223 (455)
T 2cib_A 155 KKFRDQLD---GRFAKLYHELERGTD--PLAYVDPY---LPI-ESFRRRDEARNGLVALVADIMNGRIANPPTDK--SDR 223 (455)
T ss_dssp HHHHTTCC---HHHHHHHHHHHTTCC--GGGGTCTT---CSC-HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred CCcchhhh---HHHHHHHHHHHhhhh--HHHHhccc---CCC-hhHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--Ccc
Confidence 98754322 244444444322111 12224453 332 22345566777888999999998876433211 124
Q ss_pred CHHHHHhhccccCCCC-CCHHhhhhhc
Q 040285 272 DMLDALLKICEDKSVE-IDINDIKHLF 297 (298)
Q Consensus 272 d~l~~lL~~~~~~~~~-lt~~~i~~~~ 297 (298)
|+++.|+++.++++.. +|+++|.+.+
T Consensus 224 dll~~ll~~~~~~~~~~l~~~~i~~~~ 250 (455)
T 2cib_A 224 DMLDVLIAVKAETGTPRFSADEITGMF 250 (455)
T ss_dssp CHHHHHHHCBCTTSSBSCCHHHHHHHH
T ss_pred cHHHHHHHhhhhcCCCCCCHHHHHHHH
Confidence 9999999876544445 9999987654
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.95 E-value=5.5e-28 Score=222.23 Aligned_cols=241 Identities=16% Similarity=0.169 Sum_probs=177.4
Q ss_pred CCCCCCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccccc
Q 040285 29 SGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIY 108 (298)
Q Consensus 29 ~~~~~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~ 108 (298)
.++.+.||||+++|++||++.+..+++ .+.+++++||++|++++++.++|+++||+++++++.+++..|+++.. ....
T Consensus 8 ~~~~~~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~-~~~~ 85 (444)
T 2ve3_A 8 LNSLPIPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWP-LSTR 85 (444)
T ss_dssp -CCCCCCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECC-HHHH
T ss_pred CCCCCCCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchh-HHHH
Confidence 344568999999999999988755567 78899999999999998889999999999999999987777875432 1122
Q ss_pred ccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHH
Q 040285 109 AHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNT 188 (298)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~ 188 (298)
.+ .+..++. ..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+.+.+..+++++|+++
T Consensus 86 ~~-~g~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~vi~~~ 158 (444)
T 2ve3_A 86 IL-LGPNALA-TQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGK----ANEVIWYPQLRRMTFDVAATL 158 (444)
T ss_dssp HH-HCTTSGG-GCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHH----SSEEEHHHHHHHHHHHHHHHH
T ss_pred HH-hCccccc-cCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHHHHHH
Confidence 22 1222544 46899999999998 78999999999999999999999999852 568999999999999999999
Q ss_pred HhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040285 189 IFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFT 268 (298)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 268 (298)
+|| +.+..+ .++.+.+......... +|. ++|... .++..+..+.+.+++.++|++++++ ..
T Consensus 159 ~fG-~~~~~~----~~~~~~~~~~~~~~~~------~~~--~~p~~~-~~~~~~~~~~~~~~~~~~i~~r~~~---~~-- 219 (444)
T 2ve3_A 159 FMG-EKVSQN----PQLFPWFETYIQGLFS------LPI--PLPNTL-FGKSQRARALLLAELEKIIKARQQQ---PP-- 219 (444)
T ss_dssp HTC-HHHHSC----TTHHHHHHHHHHHHSS------CCC--CSTTSH-HHHHHHHHHHHHHHHHHHHHHHHTS---CC--
T ss_pred HcC-CCcccH----HHHHHHHHHHHHHHhc------CCc--cCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcC---CC--
Confidence 999 332221 2333333333332221 121 222112 2455667778889999999888754 11
Q ss_pred CCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 269 ESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 269 ~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.++|+++.|+++.++++..+|+++|.+.+
T Consensus 220 ~~~d~l~~ll~~~~~~~~~l~~~~i~~~~ 248 (444)
T 2ve3_A 220 SEEDALGILLAARDDNNQPLSLPELKDQI 248 (444)
T ss_dssp CCSSHHHHHHHCBCTTSCBCCHHHHHHHH
T ss_pred CccCHHHHHHhccccCCCCCCHHHHHHHH
Confidence 23699999998765444569999987754
No 20
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.95 E-value=1.4e-27 Score=221.62 Aligned_cols=256 Identities=14% Similarity=0.155 Sum_probs=183.7
Q ss_pred cCCCCCCCCCCCCCceecccCCC-C----CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 28 KSGSRRLPPGPTPYPVIGNLLEL-G----DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 28 ~~~~~~~pPgP~~~PilGnl~~l-~----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
+.++.+.+|||+++|+. |++++ . +.+|..+.+|+++||+||++++|+.++|+++||++++++|.++ ..|++|+
T Consensus 4 ~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~ 81 (487)
T 3n9y_A 4 SPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERF 81 (487)
T ss_dssp CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCC
T ss_pred CCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCC
Confidence 44555669999998875 77665 1 3678999999999999999999999999999999999999876 4799997
Q ss_pred cccccc---ccccCCCCcccCCCChhHHHHHHHHHhh-cCChhHHhHhHHHHHHHHHHHHHHHHHHh----hCCcceehH
Q 040285 103 IPDAIY---AHGHHEFGMPWLPVATLWRNLRKICNSH-AFSSRQLDANQHLRRKKIQDLLAYVQENC----RAGTAIHIG 174 (298)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~-~f~~~~l~~~~~~~~~~~~~l~~~l~~~~----~~~~~vd~~ 174 (298)
...... .....+.+ ++..+|+.|+++||++ ++ +|+++.++.+.+.++++++.+++.|.+.. .+++++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~-l~~~~g~~w~~~Rr~l-~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~ 159 (487)
T 3n9y_A 82 LIPPWVAYHQYYQRPIG-VLLKKSAAWKKDRVAL-NQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDIS 159 (487)
T ss_dssp CCHHHHHHHHHTTCCCC-GGGCCHHHHHHHHHHH-HHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCH
T ss_pred CCcHHHHHHHHccccCC-CccCCcHHHHHHHHhc-CcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHH
Confidence 543321 11112234 4567899999999999 56 59999999999999999999999998653 124589999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCc---hhHHHHHHHHHHHHHHhCCCCccccccc--cccCCcccHHHHHHHHHHHHHH
Q 040285 175 QAAFDTTLNLISNTIFSIDLADPTS---KTAREFKQTNWGMMEEAGKPNLSDFFPV--LENLDLQGIRRRMTVYFGKMLD 249 (298)
Q Consensus 175 ~~~~~~t~~ii~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~l~~~~~~~~~~~~~~~~~~ 249 (298)
+.+..+++|+|+.++||.+++..++ +....+.+.+...+..... ...+|. +++++. +..++..+..+.+.+
T Consensus 160 ~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~l~~~~~~-~~~~~~~~~~~~~~~ 235 (487)
T 3n9y_A 160 DDLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVP---MLNLPPDLFRLFRT-KTWKDHVAAWDVIFS 235 (487)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHGG---GTTSCHHHHHHHCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHHHH---HHhcCHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 9999999999999999999875332 2345666666666654332 223442 233321 223344445556667
Q ss_pred HHHHHHHHHHHhhhcCC---CCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 250 VFDRLIDQRLKQRQERD---FTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 250 ~~~~~i~~~~~~~~~~~---~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
++.+.+++++++...+. . ...|+++.|++. +.+++++|.+.+
T Consensus 236 ~~~~~i~~~~~~~~~~~~~~~-~~~d~l~~ll~~-----~~l~~~ei~~~~ 280 (487)
T 3n9y_A 236 KADIYTQNFYWELRQKGSVHH-DYRGILYRLLGD-----SKMSFEDIKANV 280 (487)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-SCCCHHHHHHHS-----CSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccc-chHHHHHHHHhc-----CCCCHHHHHHHH
Confidence 77777776654432211 1 236999999973 248998887654
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.95 E-value=3.1e-28 Score=225.16 Aligned_cols=243 Identities=17% Similarity=0.245 Sum_probs=155.5
Q ss_pred CCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCc-cccccccc
Q 040285 33 RLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTI-PDAIYAHG 111 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~-~~~~~~~~ 111 (298)
..||||+++|++||++++.++++..+.++++ ||+||++++|+.++++++||++++++|.++ .|+.++. ......+
T Consensus 23 eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~- 98 (467)
T 3dbg_A 23 EPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGL- 98 (467)
T ss_dssp BCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC--------------
T ss_pred CCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHh-
Confidence 4588999999999999887788999999987 999999999999999999999999999886 6744432 2222222
Q ss_pred cCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhc
Q 040285 112 HHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFS 191 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG 191 (298)
.+..++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|. +++++|+.+.+..+++++++.++||
T Consensus 99 ~g~~~l-~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~----~~~~~d~~~~~~~~~~~vi~~~~~g 172 (467)
T 3dbg_A 99 LGKEGV-ATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQ----PGKTVDATSESFRVAVRVAARCLLR 172 (467)
T ss_dssp ------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSC----TTSCEEHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCc-ccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhc----cCCcCcHHHHHHHHHHHHHHHHHhC
Confidence 221344 457899999999998 7899999999999999999999999874 3568999999999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccc--cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 040285 192 IDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPV--LENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTE 269 (298)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 269 (298)
.+++.. ....+...+..++..... ..++|+ +.+++. +..++..+..+.+.+++.++|+++++.. . .
T Consensus 173 ~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~---~--~ 240 (467)
T 3dbg_A 173 GQYMDE---RAERLCVALATVFRGMYR---RMVVPLGPLYRLPL-PANRRFNDALADLHLLVDEIIAERRASG---Q--K 240 (467)
T ss_dssp SSCCHH---HHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTCC---S--S
T ss_pred Ccccch---hHHHHHHHHHHHHHHHHH---HhccchhhhhhCCC-hHhHHHHHHHHHHHHHHHHHHHHHHhcC---C--C
Confidence 987642 345565555555543221 124442 334432 2234566667788888999888876532 2 2
Q ss_pred CCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 270 SKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 270 ~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
+.|+++.|+++.++++..+|+++|.+.+
T Consensus 241 ~~dll~~ll~~~~~~~~~ls~~ei~~~~ 268 (467)
T 3dbg_A 241 PDDLLTALLEAKDDNGDPIGEQEIHDQV 268 (467)
T ss_dssp CCSHHHHHTTC--------CHHHHHHHH
T ss_pred chHHHHHHHhhccCCCCCCCHHHHHHHH
Confidence 4699999998765444469999987654
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.93 E-value=8.9e-26 Score=207.16 Aligned_cols=226 Identities=14% Similarity=0.223 Sum_probs=163.1
Q ss_pred CCCCCCCCCCceecccC-CCCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCccccccc
Q 040285 32 RRLPPGPTPYPVIGNLL-ELGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYA 109 (298)
Q Consensus 32 ~~~pPgP~~~PilGnl~-~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~ 109 (298)
.+.||||+++|++||+. .+..+++..+.+| ++||||+++++ |+.++|+++||++++++|.++ .|++|+.......
T Consensus 25 ~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~ 101 (436)
T 2cd8_A 25 QQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTTPL 101 (436)
T ss_dssp ---------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSSCC
T ss_pred ccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccccccc
Confidence 46799999999999986 3457789999999 99999999998 889999999999999999886 6888864211111
Q ss_pred ----cccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHH
Q 040285 110 ----HGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNL 184 (298)
Q Consensus 110 ----~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~i 184 (298)
... ..++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. .++++|+...+ ..+++++
T Consensus 102 ~~~~~~~-~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~~v 176 (436)
T 2cd8_A 102 TEAEAAL-NHNM-LESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLAA--PDGRADLMESLAWPLPITV 176 (436)
T ss_dssp CTTGGGT-CCSG-GGCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHTC--TTSCEEHHHHTTTHHHHHH
T ss_pred ccccccc-cccc-cccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCcchHHHHHHHHHHHH
Confidence 111 2344 447899999999998 789999999999999999999999999742 25689999876 5799999
Q ss_pred HHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040285 185 ISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQE 264 (298)
Q Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 264 (298)
|+. +||.+.+ +...+......++. . . + + ++..+...++.+++.++|+++++.
T Consensus 177 i~~-~~G~~~~-----~~~~~~~~~~~~~~---~-----~-~-----~-----~~~~~~~~~~~~~~~~~i~~r~~~--- 228 (436)
T 2cd8_A 177 ISE-LLGVPEP-----DRAAFRVWTDAFVF---P-----D-D-----P-----AQAQTAMAEMSGYLSRLIDSKRGQ--- 228 (436)
T ss_dssp HHH-HHTCCGG-----GHHHHHHHHHHHHS---C-----S-S-----T-----THHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHH-HhCCCHH-----HHHHHHHHHHHHhc---c-----C-C-----H-----HHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 998 7998653 23344444443321 0 0 1 1 245566778888898888887642
Q ss_pred CCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 265 RDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 265 ~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
. .+|+++.|+++.++++..+|+++|.+.+
T Consensus 229 -~---~~d~l~~ll~~~~~~~~~ls~~ei~~~~ 257 (436)
T 2cd8_A 229 -D---GEDLLSALVRTSDEDGSRLTSEELLGMA 257 (436)
T ss_dssp -C---CCSHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred -C---CCCHHHHHHHhhhccCCCCCHHHHHHHH
Confidence 1 2699999998764334469999988754
No 23
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.93 E-value=1.1e-24 Score=200.43 Aligned_cols=234 Identities=16% Similarity=0.167 Sum_probs=168.1
Q ss_pred CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccc-ccc-cc--cCCCCcccCCCChhHH
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDA-IYA-HG--HHEFGMPWLPVATLWR 127 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~-~~~-~~--~~~~~~~~~~~g~~Wk 127 (298)
+.+|..+.+|+++|||||++++|+.++|+++||++++++|.+ ..|.+++.... ... .. ..+.++++..+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 568999999999999999999999999999999999999964 34655543211 111 11 0124555556899999
Q ss_pred HHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHH
Q 040285 128 NLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDLADPTSKTAREFKQ 207 (298)
Q Consensus 128 ~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~ 207 (298)
++||++ +++|+++.++.+.+.+.++++.+++.|.+...+++++|+.+.+..+++|+|+.++||.+++...+ ....+..
T Consensus 88 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~-~~~~~~~ 165 (456)
T 3mdm_A 88 KQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLG-AQKPLSQ 165 (456)
T ss_dssp HHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGT-CCHHHHH
T ss_pred HHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcc-cccHHHH
Confidence 999998 78999999999999999999999999987654567999999999999999999999999875321 1234444
Q ss_pred HHHHHHHHhCCCCccccccccccCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCC
Q 040285 208 TNWGMMEEAGKPNLSDFFPVLENLDLQ-GIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSV 286 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~P~l~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~ 286 (298)
.+..++..... ...|++.++|.. ...++..+..+.+.+++.++++++++..+.+.. .+.|+++.|+++.+ +
T Consensus 166 ~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~-~~~d~l~~ll~~~~---~ 237 (456)
T 3mdm_A 166 AVKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEE-VPADILTQILKAEE---G 237 (456)
T ss_dssp HHHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCHHHHHHHHTS---S
T ss_pred HHHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhHHHHHHHhcC---C
Confidence 44444332211 023334444421 122344556677888888899888876554432 34799999998642 3
Q ss_pred CCCHHhhhhhc
Q 040285 287 EIDINDIKHLF 297 (298)
Q Consensus 287 ~lt~~~i~~~~ 297 (298)
.++++++.+.+
T Consensus 238 ~~~~~~l~~~~ 248 (456)
T 3mdm_A 238 AQDDEGLLDNF 248 (456)
T ss_dssp CSSSHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 47888777643
No 24
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.93 E-value=1.1e-26 Score=215.94 Aligned_cols=250 Identities=13% Similarity=0.101 Sum_probs=176.4
Q ss_pred ccCCCCCCCCCCCC-CceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCC-ccccccCcc
Q 040285 27 FKSGSRRLPPGPTP-YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQD-TSFCNRTIP 104 (298)
Q Consensus 27 ~~~~~~~~pPgP~~-~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~-~~f~~Rp~~ 104 (298)
.+.++.+.||||++ +|+|||++++.++++..+.+|+++||++|++++|+.++|+++||++++++|.++. ..|++++..
T Consensus 7 ~~~~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~ 86 (491)
T 3v8d_A 7 SRRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA 86 (491)
T ss_dssp CCCCCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHH
T ss_pred hhccCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHH
Confidence 34445678999999 5999999999889999999999999999999999999999999999999997665 345555432
Q ss_pred ccccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhh---CCcceehHHHHHHHH
Q 040285 105 DAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCR---AGTAIHIGQAAFDTT 181 (298)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~---~~~~vd~~~~~~~~t 181 (298)
.....++. +.....+|+.|+++||.+ +++|+++.++.+.+.+.++++.+++.+..... ...++++.+.+..++
T Consensus 87 ~~~~~~g~---~~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (491)
T 3v8d_A 87 LSAKAFGH---RSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVM 162 (491)
T ss_dssp HHHHHHTC---CCCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHH
T ss_pred HHHHhcCC---cccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHH
Confidence 22233322 223345799999999987 78999999999999999999999875432221 134789999999999
Q ss_pred HHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccc-cCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040285 182 LNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLE-NLDLQGIRRRMTVYFGKMLDVFDRLIDQRLK 260 (298)
Q Consensus 182 ~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 260 (298)
+++++.++||.+.... +.....+.+.++.+... .+.+|.+. ++|. ...++..+..+++.+++.+.+.+++
T Consensus 163 ~~~~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~l~~~~p~-~~~~~~~~a~~~l~~~~~~~~~~~~- 233 (491)
T 3v8d_A 163 FEAGYLTIFGRDLTRR-DTQKAHILNNLDNFKQF------DKVFPALVAGLPI-HMFRTAHNAREKLAESLRHENLQKR- 233 (491)
T ss_dssp HHHHHHHHHCBCCSCG-GGHHHHHHHHHHHHHHH------HHHHHHHHTTCCG-GGCHHHHHHHHHHHHHTSHHHHTTC-
T ss_pred HHHHHHHHcCcccccc-chhhhhhHHHHHHHHHH------HHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9999999999987643 22344444444443322 22444332 2331 2234555666666655554433221
Q ss_pred hhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 261 QRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 261 ~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
. .+.|+++.++...++ ++.++++++.+.+
T Consensus 234 -----~--~~~d~l~~l~~~~~~-~~~~~~~ei~~~~ 262 (491)
T 3v8d_A 234 -----E--SISELISLRMFLNDT-LSTFDDLEKAKTH 262 (491)
T ss_dssp -----B--SCCHHHHHHHHHHHH-HBCCCHHHHHHHH
T ss_pred -----c--cccHHHHHHHHHhhc-cCCCchHHHHHHH
Confidence 1 236999999876543 2358988887653
No 25
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.92 E-value=1e-23 Score=191.49 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=162.7
Q ss_pred CCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC-CeeEEEecCHHHHHHHHHhCC-ccccccCccccccc--
Q 040285 34 LPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-QVTTVVFSSAAMAKEILQNQD-TSFCNRTIPDAIYA-- 109 (298)
Q Consensus 34 ~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~~~~~~~evL~~~~-~~f~~Rp~~~~~~~-- 109 (298)
+||||+++|++||+++ +|+..+.+|. +||||++++++ +.+.+++++++.++++|.++. ..+++|+.......
T Consensus 2 ~pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~ 77 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASG 77 (404)
T ss_dssp ----CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHH
T ss_pred CCCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccc
Confidence 5999999999999875 7888999996 69999999874 456777899999999999874 34556654332211
Q ss_pred --cccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHH
Q 040285 110 --HGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISN 187 (298)
Q Consensus 110 --~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~ 187 (298)
...+..++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+....|+++|+...+...+.++++.
T Consensus 78 ~~~~~~~~~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~ 155 (404)
T 1jfb_A 78 KQAAKAKPTF-VDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIY 155 (404)
T ss_dssp HHHTTSCCCG-GGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHH
T ss_pred cchhcccCcc-cccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 11222344 446899999999998 78999999999999999999999999986533356899999999999999999
Q ss_pred HHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 040285 188 TIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDF 267 (298)
Q Consensus 188 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 267 (298)
.+||.+++. .++.......+. . +.+ ..++..+..+.+.+++.++|++++++ .
T Consensus 156 ~~~G~~~~~------~~~~~~~~~~~~-----------~---~~~---~~~~~~~~~~~~~~~~~~~i~~r~~~----~- 207 (404)
T 1jfb_A 156 TLLGVPFND------LEYLTQQNAIRT-----------N---GSS---TAREASAANQELLDYLAILVEQRLVE----P- 207 (404)
T ss_dssp HHHTCCGGG------HHHHHHHHHHHH-----------C---TTS---CHHHHHHHHHHHHHHHHHHHHHHHHS----C-
T ss_pred HHcCCCHHH------HHHHHHHHHHHh-----------c---cCc---chHHHHHHHHHHHHHHHHHHHHHHhC----C-
Confidence 999986631 122222222110 0 111 12455667778888999999888753 1
Q ss_pred CCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 268 TESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 268 ~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.+|+++.|+++..+ ++.+|+++|.+.+
T Consensus 208 --~~d~l~~ll~~~~~-~~~l~~~ei~~~~ 234 (404)
T 1jfb_A 208 --KDDIISKLCTEQVK-PGNIDKSDAVQIA 234 (404)
T ss_dssp --CSSHHHHHHHHTTT-TTSSCHHHHHHHH
T ss_pred --CCcHHHHHHHhhcc-CCCCCHHHHHHHH
Confidence 26999999965432 3459999987754
No 26
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.91 E-value=7.4e-23 Score=186.37 Aligned_cols=229 Identities=11% Similarity=0.001 Sum_probs=164.9
Q ss_pred CCCCCCCceecccCCCCCCchHHHHHHHHHh-CCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccc--cccccc
Q 040285 35 PPGPTPYPVIGNLLELGDKPHKSLAKLAKIH-GPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPD--AIYAHG 111 (298)
Q Consensus 35 pPgP~~~PilGnl~~l~~~~~~~~~~~~~~y-G~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~--~~~~~~ 111 (298)
|||| |++||++.+..+|+..+.++.++| |||+++++++.+++++++|++++ +|.+. ..|++++..+ ....+
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~- 77 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL- 77 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT-
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc-
Confidence 7776 899999888778899999999999 79999999989999999999986 77543 5677654322 11222
Q ss_pred cCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhc
Q 040285 112 HHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFS 191 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG 191 (298)
.+..++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+.+.+..+++++|+++ ||
T Consensus 78 ~g~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~----~~~vdl~~~~~~~~~~vi~~~-~G 150 (415)
T 3awm_A 78 LGQGGV-QGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTR----KGEIVFYDELHEPLTRAVCAW-AG 150 (415)
T ss_dssp SCSSSG-GGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHH----HSEEEHHHHHHHHHHHHHHHH-HT
T ss_pred cCCcce-eecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhcc----CCcEeHHHHHHHHHHHHHHHH-cC
Confidence 222243 457899999999998 78999999999999999999999999864 347999999999999999999 89
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 040285 192 IDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESK 271 (298)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 271 (298)
.+.+.. +..++.+.+...+.... . + .+...+..+..+++.+++.++|+++++..... ..+
T Consensus 151 ~~~~~~---~~~~~~~~~~~~~~~~~---------~---~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~~ 210 (415)
T 3awm_A 151 VPLPDD---EAGNRAGELRALFDAAG---------S---A--SPRHLWSRLARRRVDAWAKRIIEGIRAGSIGS---GSG 210 (415)
T ss_dssp CCCCGG---GHHHHHHHHHHHHHSTT---------C---S--SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC---CTT
T ss_pred CCCCcc---hHHHHHHHHHHHHHHhc---------c---c--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCC
Confidence 876532 23444444333332211 0 0 11234566677889999999999888653221 236
Q ss_pred CHHHHHhhccccCCCCCCHHhhhhh
Q 040285 272 DMLDALLKICEDKSVEIDINDIKHL 296 (298)
Q Consensus 272 d~l~~lL~~~~~~~~~lt~~~i~~~ 296 (298)
|+++.|+.+.++++..++++++.+.
T Consensus 211 d~l~~ll~~~~~~g~~~~~~~~~~~ 235 (415)
T 3awm_A 211 TAAYAIAWHRDRHDDLLSPHVAAVE 235 (415)
T ss_dssp SHHHHHHHCBCTTSCBCCHHHHHHH
T ss_pred CHHHHHHhhhhccCCCCCHHHHHHH
Confidence 9999999876544446888876544
No 27
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.90 E-value=8.4e-23 Score=186.15 Aligned_cols=227 Identities=8% Similarity=0.002 Sum_probs=166.3
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhC-CceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccc--cccccccCCCC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHG-PIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPD--AIYAHGHHEFG 116 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~--~~~~~~~~~~~ 116 (298)
+.|++||++.+.++|+..+.+++++|| |||++++++.++|++++|++++. +.+ ...|+.++... ....+ .+..+
T Consensus 7 g~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~-l~~-~~~~~~~~~~~~~~~~~~-~g~~~ 83 (417)
T 1izo_A 7 HDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKV-FYD-TDRFQRQNALPKRVQKSL-FGVNA 83 (417)
T ss_dssp BCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHH-HTC-TTTEECTTCSCHHHHTTT-TCTTC
T ss_pred CCCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHH-Hhc-ccccccccccccchhhhh-ccccc
Confidence 349999998887788999999999998 99999999999999999999975 433 34566553221 11222 22224
Q ss_pred cccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhccCCCC
Q 040285 117 MPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDLAD 196 (298)
Q Consensus 117 ~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG~~~~~ 196 (298)
+ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+.+.+..+++++|+.+ +|.+++.
T Consensus 84 l-~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~vi~~~-~G~~~~~ 156 (417)
T 1izo_A 84 I-QGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEK----ADEVVLFEEAKEILCRVACYW-AGVPLKE 156 (417)
T ss_dssp G-GGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEHHHHHHHHHHHHHHHH-HTCCCCT
T ss_pred e-eecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHHHHHH-cCCCCCc
Confidence 3 457899999999998 78999999999999999999999998853 568999999999999999998 6988764
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHH
Q 040285 197 PTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDA 276 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ 276 (298)
. +..++...+..++..... ..| ...+..+..+++.+++.++|+++++..... ..+|+++.
T Consensus 157 ~---~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~---~~~d~l~~ 216 (417)
T 1izo_A 157 T---EVKERADDFIDMVDAFGA-----VGP---------RHWKGRRARPRAEEWIEVMIEDARAGLLKT---TSGTALHE 216 (417)
T ss_dssp T---THHHHHHHHHHHHHHTTC-----CSH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSSCC---CTTSHHHH
T ss_pred h---HHHHHHHHHHHHHhhccc-----CCc---------cchhHHHHHHHHHHHHHHHHHHHHhhccCC---CcCCHHHH
Confidence 3 234454444444433211 111 123455677888999999999988653222 23699999
Q ss_pred HhhccccCCCCCCHHhhhhh
Q 040285 277 LLKICEDKSVEIDINDIKHL 296 (298)
Q Consensus 277 lL~~~~~~~~~lt~~~i~~~ 296 (298)
|+++.++++..++++++.+.
T Consensus 217 ll~~~~~~g~~l~~~~~~~~ 236 (417)
T 1izo_A 217 MAFHTQEDGSQLDSRMAAIE 236 (417)
T ss_dssp HHHCBCTTSCBCCHHHHHHH
T ss_pred HHHhccccCCCCCHHHHHHH
Confidence 99876544446888866543
No 28
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.90 E-value=2.8e-23 Score=190.02 Aligned_cols=239 Identities=11% Similarity=0.064 Sum_probs=165.2
Q ss_pred CCCCCCCCCCCCceecccCCCC-----CCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCc
Q 040285 30 GSRRLPPGPTPYPVIGNLLELG-----DKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTI 103 (298)
Q Consensus 30 ~~~~~pPgP~~~PilGnl~~l~-----~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~ 103 (298)
.+.++||| ++|++.+.. .+|+..+.+|.+ ||||+++++ |+.++||++++++++|+|.+. ..|++|+.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 45678998 999876552 357888888876 899999998 789999999999999999654 57999875
Q ss_pred -cccc---c-c-c---cc---C-CCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcc
Q 040285 104 -PDAI---Y-A-H---GH---H-EFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTA 170 (298)
Q Consensus 104 -~~~~---~-~-~---~~---~-~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 170 (298)
.... . . + .+ + ..++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. +++
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~l-~~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~ 150 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDSL-TSMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDF---DGE 150 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCCG-GGCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTS---SSE
T ss_pred cccCCcccccchhcccccccccccccc-ccCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHh---CCC
Confidence 3221 1 1 1 11 1 1244 446799999999998 789999999999999999999999998742 358
Q ss_pred eehHHH-HHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHH
Q 040285 171 IHIGQA-AFDTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLD 249 (298)
Q Consensus 171 vd~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~ 249 (298)
+|+... ...+++++|+.+ ||.+.+. ...+.+....++..... . ...+|++.+++ +.+.++..+..+++.+
T Consensus 151 ~d~~~~~~~~~~~~vi~~~-fG~~~~~-----~~~~~~~~~~~~~~~~~-~-~~~~P~l~~~~-~~~~~~~~~~~~~~~~ 221 (428)
T 1cpt_A 151 CDFMTDCALYYPLHVVMTA-LGVPEDD-----EPLMLKLTQDFFGVHEP-D-EQAVAAPRQSA-DEAARRFHETIATFYD 221 (428)
T ss_dssp EEHHHHTTTTHHHHHHHHH-HTCCGGG-----HHHHHHHHHTTTCC-------------------CHHHHHHHHHHHHHH
T ss_pred eehHHHHHhhhHHHHHHHH-cCCCHhH-----HHHHHHHHHHHHhcccc-c-ccccccccccc-hhhHHHHHHHHHHHHH
Confidence 999755 467999999999 9986542 23444433322211110 1 12345544331 1333566677788889
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 250 VFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 250 ~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
++.++|+++++. . .+|+++.|+++.+ ++..+|+++|.+.+
T Consensus 222 ~~~~~i~~r~~~----~---~~dll~~ll~~~~-~~~~ls~~ei~~~~ 261 (428)
T 1cpt_A 222 YFNGFTVDRRSC----P---KDDVMSLLANSKL-DGNYIDDKYINAYY 261 (428)
T ss_dssp HHHHHHHHHTTS----C---CSSHHHHHHHCBS-SSSBCCHHHHHHHH
T ss_pred HHHHHHHHHHcC----C---CCcHHHHHHhccc-cCCCCCHHHHHHHH
Confidence 999999887641 1 2699999998754 33459999987754
No 29
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.90 E-value=4.3e-22 Score=180.99 Aligned_cols=220 Identities=14% Similarity=0.164 Sum_probs=161.0
Q ss_pred CCCCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEe----c-CC-eeEEEecCHHHHHHHH-HhCCccccccCc
Q 040285 31 SRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLK----F-GQ-VTTVVFSSAAMAKEIL-QNQDTSFCNRTI 103 (298)
Q Consensus 31 ~~~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~----~-g~-~~~vvv~~~~~~~evL-~~~~~~f~~Rp~ 103 (298)
..++||||+++|+. +..+++..+.+| ++||+|++++ + |+ .++|+++||++++++| .++ .|++++.
T Consensus 8 ~~~lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~ 79 (406)
T 1ued_A 8 VAPLLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQ 79 (406)
T ss_dssp CCCEEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCC
T ss_pred CCCCcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccccc
Confidence 35689999999987 457789999999 9999999999 7 88 9999999999999999 443 3677654
Q ss_pred ccccc-ccc---cCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHH
Q 040285 104 PDAIY-AHG---HHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFD 179 (298)
Q Consensus 104 ~~~~~-~~~---~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~ 179 (298)
..... .+. ....++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ .|+++|+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~ 154 (406)
T 1ued_A 80 FTQSKSGAHVEAQFVGQI-STYDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEA---EGPSADLQGLFAD 154 (406)
T ss_dssp C---------CGGGTTCG-GGCCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTEEHHHHTHH
T ss_pred cccccccccccccccccc-ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHH
Confidence 21110 110 011244 446899999999998 78999999999999999999999999974 2668999988775
Q ss_pred -HHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 040285 180 -TTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQR 258 (298)
Q Consensus 180 -~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (298)
+++++|+ .+||.+.+ +...+......++. . .. . .++..+..+++.+++.++|+++
T Consensus 155 ~~~~~vi~-~~~G~~~~-----~~~~~~~~~~~~~~---------~-----~~--~--~~~~~~~~~~~~~~~~~~i~~r 210 (406)
T 1ued_A 155 PVGAHALC-ELLGIPRD-----DQREFVRRIRRNAD---------L-----SR--G--LKARAADSAAFNRYLDNLLARQ 210 (406)
T ss_dssp HHHHHHHH-HHHTCCHH-----HHHHHHHHHHHCC-----------------C--C--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHH-HHcCCCHH-----HHHHHHHHHHHHHh---------c-----cC--C--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 57997532 22334433332211 0 00 1 1356667788889999999888
Q ss_pred HHhhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 259 LKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 259 ~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
++. . .+|+++.|+++. +..+|++++.+.+
T Consensus 211 ~~~----~---~~d~l~~ll~~~---~~~ls~~ei~~~~ 239 (406)
T 1ued_A 211 RAD----P---DDGLLGMIVRDH---GDNVTDEELKGLC 239 (406)
T ss_dssp HHS----C---CSSHHHHHHHHH---GGGSCHHHHHHHH
T ss_pred HhC----C---CCCHHHHHHHhc---CCCCCHHHHHHHH
Confidence 752 1 269999999864 2358999987754
No 30
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.89 E-value=1.3e-23 Score=194.94 Aligned_cols=246 Identities=13% Similarity=0.123 Sum_probs=157.0
Q ss_pred CCCCCCCCCCCC-CceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCC-ccccccCcccc
Q 040285 29 SGSRRLPPGPTP-YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQD-TSFCNRTIPDA 106 (298)
Q Consensus 29 ~~~~~~pPgP~~-~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~-~~f~~Rp~~~~ 106 (298)
.++.+.||||++ +|++||++++.++++..+.+|+++||++|++++|+.++||++||++++++|.++. ..|..++. ..
T Consensus 9 ~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~-~~ 87 (491)
T 3dax_A 9 RRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHF-AT 87 (491)
T ss_dssp CCCTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHH-HH
T ss_pred ccCCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHH-HH
Confidence 344568999998 8999999998778999999999999999999999999999999999999997655 23433321 11
Q ss_pred ccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHH---hhCCcceehHHHHHHHHHH
Q 040285 107 IYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQEN---CRAGTAIHIGQAAFDTTLN 183 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~~~vd~~~~~~~~t~~ 183 (298)
.... .+ .++....+|+.|+++|+.+ .++|+.+.++.+.+.+.+++..+++..... ......+++...+..++++
T Consensus 88 ~~~~-~g-~~~~~~~~g~~w~~~r~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 164 (491)
T 3dax_A 88 SAKA-FG-HRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HHHH-HT-CCCCCGGGTSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHH
T ss_pred HHHH-cC-CCcccccchhHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHH
Confidence 1111 11 2332145789999999998 568998888888888888777776554321 1112368899999999999
Q ss_pred HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccc-cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040285 184 LISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLE-NLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQR 262 (298)
Q Consensus 184 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 262 (298)
+++.++||.+.+.. +.....+......+.. +.+++|++. ++|.. ..++..+..+.+.+. +++++.+..
T Consensus 165 ~~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~------~~~~~p~l~~~lp~~-~~~~~~~~~~~~~~~---~~~~~~~~~ 233 (491)
T 3dax_A 165 AGYLTIFGRDLTRR-DTQKAHILNNLDNFKQ------FDKVFPALVAGLPIH-MFRTAHNAREKLAES---LRHENLQKR 233 (491)
T ss_dssp HHHHHHHCBCSTTG-GGHHHHHHHHHHHHHH------HHHHHHHHHTTCCGG-GSHHHHHHHHHHHHH---TSHHHHTTC
T ss_pred HhHHHHcCcccccc-cchhhhhhHHHHHHHH------HHHHhHHHHHhCCHh-hhhHHHHHHHHHHHH---HHHHHhhcc
Confidence 99999999887643 2111112222221111 223566443 34421 123333333333332 223332221
Q ss_pred hcCCCCCCCCHHHHHhhccccCCCCCCHHhhhh
Q 040285 263 QERDFTESKDMLDALLKICEDKSVEIDINDIKH 295 (298)
Q Consensus 263 ~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~ 295 (298)
. .+.|+++.+++..++. +.++++++.+
T Consensus 234 ---~--~~~d~l~~ll~~~~~~-~~~~~~~i~~ 260 (491)
T 3dax_A 234 ---E--SISELISLRMFLNDTL-STFDDLEKAK 260 (491)
T ss_dssp ---B--SCCHHHHHHHHHHHHH-BCCCHHHHHH
T ss_pred ---c--chhHHHHHHHHHHHhc-CCChHHHHHH
Confidence 1 2369999998765432 2488888764
No 31
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.89 E-value=1.7e-21 Score=177.30 Aligned_cols=224 Identities=13% Similarity=0.139 Sum_probs=162.8
Q ss_pred CCCCCCCCCceecccCCCCCCchHHHHHHHHHh-CCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCcccccccc
Q 040285 33 RLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIH-GPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAH 110 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~y-G~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~ 110 (298)
..||||+++|.+..-..+.++|+..+.+| ++| |||+++++ |+.++|+++|+++++++|.++. |++++.......+
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~ 81 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPAT 81 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCCC
T ss_pred CCCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCccccccccc
Confidence 46889999997633334557899999999 888 99999998 8999999999999999998753 5666531111111
Q ss_pred -------ccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHH-HHHH
Q 040285 111 -------GHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAF-DTTL 182 (298)
Q Consensus 111 -------~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~ 182 (298)
.....++ +..+|+.|+++||++ ++.|+++.++.+.+.+.++++.+++.|.+ .|+++|+...+. .+++
T Consensus 82 ~~~~~~~~~~~~~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~ 156 (412)
T 2zbx_A 82 SPRFEAVRESPQAF-IGLDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLA---AGPTADLVSQFALPVPS 156 (412)
T ss_dssp SGGGC----CCCCG-GGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHH
T ss_pred cccccccccccccc-ccCCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHH
Confidence 0011244 446899999999998 78999999999999999999999999974 266899998876 4899
Q ss_pred HHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040285 183 NLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQR 262 (298)
Q Consensus 183 ~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 262 (298)
++|+. +||.+.+ +...+...+..++.. . .+ ++..+..+.+.+++.++|+++++.
T Consensus 157 ~vi~~-~~G~~~~-----~~~~~~~~~~~~~~~---------~--------~~--~~~~~~~~~~~~~~~~~i~~r~~~- 210 (412)
T 2zbx_A 157 MVICR-LLGVPYA-----DHEFFQDASKRLVQS---------T--------DA--QSALTARNDLAGYLDGLITQFQTE- 210 (412)
T ss_dssp HHHHH-HHTCCGG-----GHHHHHHHHHHHHHC---------S--------SH--HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHH-HcCCCHH-----HHHHHHHHHHHHhcc---------C--------cH--HHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 99996 7998653 233444444433220 0 11 445667778888999999888753
Q ss_pred hcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 263 QERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 263 ~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
. .+|+++.|+++.++ +..+|+++|.+.+
T Consensus 211 ---~---~~d~l~~ll~~~~~-~~~ls~~ei~~~~ 238 (412)
T 2zbx_A 211 ---P---GAGLVGALVADQLA-NGEIDREELISTA 238 (412)
T ss_dssp ---C---CSSHHHHHHHTTTT-TTSSCHHHHHHHH
T ss_pred ---C---CCCHHHHHHHhccc-CCCCCHHHHHHHH
Confidence 1 26999999987542 3469999987754
No 32
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.88 E-value=2.2e-22 Score=187.16 Aligned_cols=250 Identities=14% Similarity=0.124 Sum_probs=154.5
Q ss_pred ccCCCCCCCCCCCC-CceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccc
Q 040285 27 FKSGSRRLPPGPTP-YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPD 105 (298)
Q Consensus 27 ~~~~~~~~pPgP~~-~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~ 105 (298)
.+.+..+.||||++ +|++||++++.++++..+.+|+++||++|++++|+.++||++||++++++|.++...++.++...
T Consensus 12 ~~~~~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~ 91 (498)
T 3b6h_A 12 RRTRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAI 91 (498)
T ss_dssp -CCCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHH
T ss_pred HhccCCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHH
Confidence 33445678999998 89999999886678999999999999999999999999999999999999987664344443211
Q ss_pred -cccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHH-hhCCcceehHHHHHHHHHH
Q 040285 106 -AIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQEN-CRAGTAIHIGQAAFDTTLN 183 (298)
Q Consensus 106 -~~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~~t~~ 183 (298)
..... .+ .++ +..+|+.| ||++ .++|+.+.++.+.+.+.++....++..... ......+++...+..++++
T Consensus 92 ~~~~~~-~g-~~~-~~~~~~~~---rr~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~ 164 (498)
T 3b6h_A 92 FLMERI-FD-VQL-PHYSPSDE---KARM-KLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLR 164 (498)
T ss_dssp HHHHHT-SC-CCC-TTCCHHHH---HHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHH
T ss_pred HHHHHH-cC-CCc-cccCHHHH---HHHH-HHhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHH
Confidence 12222 12 233 23567777 4555 457888888888777777776666554322 1112368899999999999
Q ss_pred HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040285 184 LISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQ-GIRRRMTVYFGKMLDVFDRLIDQRLKQR 262 (298)
Q Consensus 184 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 262 (298)
+++.++||.+++..+......+...+.+.+.... .+.+.+|++.+..++ ..+++..+..+.+.+ .+++++.+.
T Consensus 165 ~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~- 238 (498)
T 3b6h_A 165 AGYLTLYGIEALPRTHESQAQDRVHSADVFHTFR--QLDRLLPKLARGSLSVGDKDHMCSVKSRLWK---LLSPARLAR- 238 (498)
T ss_dssp HHHHHHHCBSCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH---HTCHHHHTT-
T ss_pred HHHHhhcCcccccccccchhhHHHhhHHHHHHHH--HHHhhHHHHHHHhcCchhhHHHHHHHHHHHH---HHHHHHHhc-
Confidence 9999999998865421111112233333332221 123456643321011 112233333333332 222333321
Q ss_pred hcCCCCCCCCHHHHHhhccccCCCCCCHHhhh
Q 040285 263 QERDFTESKDMLDALLKICEDKSVEIDINDIK 294 (298)
Q Consensus 263 ~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~ 294 (298)
.. .+.|+++.+++..+++ +.++++++.
T Consensus 239 --~~--~~~d~l~~ll~~~~~~-~~~~~~~~~ 265 (498)
T 3b6h_A 239 --RA--HRSKWLESYLLHLEEM-GVSEEMQAR 265 (498)
T ss_dssp --CB--SCCHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred --cc--cHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 11 2369999999765432 347777765
No 33
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.87 E-value=8.3e-23 Score=184.61 Aligned_cols=197 Identities=13% Similarity=0.163 Sum_probs=146.4
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccC-ccccccccccCC
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT-IPDAIYAHGHHE 114 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp-~~~~~~~~~~~~ 114 (298)
|++..+|++||++++..+++..+.+|+++|||+++ ++|+.++|+++||++++++|.++ .|++++ .......+ .+
T Consensus 2 ~~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~-~g- 76 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRL-TG- 76 (389)
T ss_dssp EECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHH-HC-
T ss_pred cccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHH-hC-
Confidence 45677999999988866789999999999999999 99999999999999999999887 788886 22222222 12
Q ss_pred CCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhccCC
Q 040285 115 FGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDL 194 (298)
Q Consensus 115 ~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG~~~ 194 (298)
.++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|. |+++|+.+.+..+++++|+.++||.++
T Consensus 77 ~~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~-----~~~~dl~~~~~~~~~~vi~~~~fG~~~ 149 (389)
T 1n97_A 77 RGL-LTDWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLLGRALFGKPL 149 (389)
T ss_dssp SST-TTCCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHHHHHHHSSCC
T ss_pred Ccc-ccCCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc-----CCcCcHHHHHHHHHHHHHHHHHcCCcc
Confidence 354 446899999999998 7899999999999999999999998874 568999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 040285 195 ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLID 256 (298)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 256 (298)
+ + ++.+.+..+...... . .++++.++|. +..++..+..+++.+++.++|+
T Consensus 150 ~---~----~~~~~~~~~~~~~~~-~---~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~i~ 199 (389)
T 1n97_A 150 S---P----SLAEHALKALDRIMA-Q---TRSPLALLDL-AAEARFRKDRGALYREAEALIV 199 (389)
T ss_dssp C---H----HHHHHHHHHHHHHHH-H---HHCGGGGGCH-HHHHHHHHHHHHHHHHHGGGTT
T ss_pred h---H----HHHHHHHHHHHHHHH-H---HhhHHHhcCC-chhHHHHHHHHHHHHHHHHHHH
Confidence 5 1 344444444332210 1 1222244442 1233455555566666655544
No 34
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.86 E-value=1.9e-20 Score=168.79 Aligned_cols=206 Identities=14% Similarity=0.158 Sum_probs=154.8
Q ss_pred CCCchHHHHHHHHHhCCceEEecCC----eeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhH
Q 040285 51 GDKPHKSLAKLAKIHGPIMSLKFGQ----VTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLW 126 (298)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~----~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~W 126 (298)
..+|+..+.+| ++||||+++++|+ .++|+++||++++++| ++...|++|+.......... ..+.++..+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRAL-LPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----CC-CTTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccccc-cccccccCCChhH
Confidence 47899999999 5999999999987 8999999999999999 55688999975443222111 1233456789999
Q ss_pred HHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHH
Q 040285 127 RNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDLADPTSKTAREFK 206 (298)
Q Consensus 127 k~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 206 (298)
+++||++ +++|+++.++.+.+.+.++++.+++.|.+ .|+++|+...+...+.++++..+||.+.+. ...+.
T Consensus 88 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~-----~~~~~ 158 (384)
T 3oo3_A 88 TRLRRTV-APAYSARRMERLRPRIEEIVEECLDDFES---VGAPVDFVRHAAWPIPAYIACEFLGVPRDD-----QAELS 158 (384)
T ss_dssp HHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---SCSSEEHHHHTTTHHHHHHHHHHHTCCGGG-----HHHHH
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHHHcCCCHHH-----HHHHH
Confidence 9999998 78999999999999999999999999965 367899999999888888888899986532 24455
Q ss_pred HHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCC
Q 040285 207 QTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSV 286 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~ 286 (298)
+.+..++. . +..++..+..+++.+++.++|+++++. ..+|+++.|+++. +.
T Consensus 159 ~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~d~l~~ll~~~---~~ 209 (384)
T 3oo3_A 159 RMIRESRE--S-----------------RLPRQRTLSGLGIVNYTKRLTSGKRRD-------PGDGMIGVIVREH---GA 209 (384)
T ss_dssp HHHHHHHH--C-----------------SCHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHHH---GG
T ss_pred HHHHHHhc--c-----------------CChHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhc---CC
Confidence 44444433 0 012455667788888999999887642 1369999999862 24
Q ss_pred CCCHHhhhhhc
Q 040285 287 EIDINDIKHLF 297 (298)
Q Consensus 287 ~lt~~~i~~~~ 297 (298)
.+|++++.+.+
T Consensus 210 ~l~~~~l~~~~ 220 (384)
T 3oo3_A 210 EISDEELAGLA 220 (384)
T ss_dssp GSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 59999887654
No 35
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.86 E-value=1.3e-20 Score=171.41 Aligned_cols=231 Identities=14% Similarity=0.135 Sum_probs=155.2
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCcc
Q 040285 18 VALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTS 97 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~ 97 (298)
.+.+|.++++..+....+|||+ +.++|+..+.+|++ |||| ++|+.++++++|+++++++|.++ +.
T Consensus 4 ~~~~~~iyr~~~~pl~~~PGp~----------~~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~ 68 (411)
T 2jjn_A 4 DVETTCCARRTLTTIDEVPGMA----------DETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-AT 68 (411)
T ss_dssp -------------CCCSCCCSS----------CHHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TT
T ss_pred hhHhHHhhhcccCCCCCCCCcc----------cccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-cc
Confidence 3444555545555566678876 12568889999976 9998 67878999999999999999875 47
Q ss_pred ccccCccccccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHH-
Q 040285 98 FCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQA- 176 (298)
Q Consensus 98 f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~- 176 (298)
|++|+... .........++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++. .++++|+...
T Consensus 69 f~~~~~~~-~~~~~~~~~~~-~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~------~~~~~d~~~~~ 139 (411)
T 2jjn_A 69 FSSDPTRV-IEGASPTPGMI-HEIDPPEHRALRKVV-SSAFTPRTISDLEPRIRDVTRSLLAD------AGESFDLVDVL 139 (411)
T ss_dssp EESCGGGG-STTCCCCTTCG-GGCCTTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHT------SCSEEEHHHHT
T ss_pred ccCccccc-CCccccccccc-ccCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHhc------CCCceeHHHHH
Confidence 99987432 22211112344 446899999999998 78999999999999999999999887 1448999855
Q ss_pred HHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 040285 177 AFDTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLID 256 (298)
Q Consensus 177 ~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 256 (298)
...+++++|+.+ ||.+.+.. + ++.+....++... .|. +++ +...++..+..+++.+++.++|+
T Consensus 140 ~~~~~~~vi~~~-fG~~~~~~-~----~~~~~~~~~~~~~--------~~~--~~~-p~~~~~~~~~~~~~~~~~~~~i~ 202 (411)
T 2jjn_A 140 AFPLPVTIVAEL-LGLPPMDH-E----QFGDWSGALVDIQ--------MDD--PTD-PALAERIADVLNPLTAYLKARCA 202 (411)
T ss_dssp TTHHHHHHHHHH-HTCCSCCC-S----TTCCHHHHHHHSC--------CSC--TTC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHH-H----HHHHHHHHHHhcc--------Ccc--ccc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999998 99987543 1 1222233333221 111 111 12234566777888899999998
Q ss_pred HHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 257 QRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 257 ~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
++++. . .+|+++.|+++.+ ++..+|++++.+.+
T Consensus 203 ~r~~~----~---~~d~l~~ll~~~~-~~~~l~~~el~~~~ 235 (411)
T 2jjn_A 203 ERRAD----P---GDDLISRLVLAEV-DGRALDDEEAANFS 235 (411)
T ss_dssp HHHHS----C---CSSHHHHHHHCCB-TTBCCCHHHHHHHH
T ss_pred HHHhC----C---CCCHHHHHHhccc-CCCCCCHHHHHHHH
Confidence 88752 1 2699999998754 23469999987654
No 36
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.85 E-value=1.4e-20 Score=171.04 Aligned_cols=209 Identities=11% Similarity=0.160 Sum_probs=149.4
Q ss_pred CCCCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCccccccc---ccc----CCCCccc
Q 040285 48 LELGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYA---HGH----HEFGMPW 119 (298)
Q Consensus 48 ~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~---~~~----~~~~~~~ 119 (298)
..+.++||..+.+| ++||||+++++ |+.++|+++||++++++|.++. |++++....... +.. ...++ +
T Consensus 20 ~~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 95 (408)
T 3abb_A 20 RTCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPL-I 95 (408)
T ss_dssp CSSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTT-T
T ss_pred cccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCcccccccccc-c
Confidence 34567899999999 89999999998 8999999999999999998753 566543111110 110 01243 4
Q ss_pred CCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHH-HHHHHHHHHHHhccCCCCCC
Q 040285 120 LPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAF-DTTLNLISNTIFSIDLADPT 198 (298)
Q Consensus 120 ~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~~ 198 (298)
..+|+.|+++||++ ++.|+++.++.+.+.+.++++.+++.|.+ .|+++|+...+. .+++++|+. +||.+.+
T Consensus 96 ~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~--- 167 (408)
T 3abb_A 96 GVDDPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLA---KGPGADLVSAFALPVPSVAICE-LLGVPYG--- 167 (408)
T ss_dssp TCCTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSCEEHHHHTTTHHHHHHHHH-HHTCCGG---
T ss_pred cCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHH---
Confidence 56899999999998 78999999999999999999999999974 366899988776 589999997 7998653
Q ss_pred chhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHh
Q 040285 199 SKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALL 278 (298)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL 278 (298)
+...+......++.. ..| ++..+..+.+.+++.++|+++++. . .+|+++.|+
T Consensus 168 --~~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~i~~r~~~----~---~~d~l~~ll 219 (408)
T 3abb_A 168 --DHDFFEECSRNFVGA--------ATS-----------AEADAAFGELYTYLHGLVGRKQAE----P---EDGLLDELI 219 (408)
T ss_dssp --GHHHHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHH
T ss_pred --HHHHHHHHHHHHhcc--------cch-----------HHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHH
Confidence 223444443332211 001 122334556777888888887753 1 269999999
Q ss_pred hccccCCCCCCHHhhhhhc
Q 040285 279 KICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 279 ~~~~~~~~~lt~~~i~~~~ 297 (298)
++.++ +..+|+++|.+.+
T Consensus 220 ~~~~~-~~~ls~~ei~~~~ 237 (408)
T 3abb_A 220 ARQLE-EGDLDHDEVVMIA 237 (408)
T ss_dssp HHHHT-SSSCCHHHHHHHH
T ss_pred hcccC-CCCCCHHHHHHHH
Confidence 86542 3459999987754
No 37
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.85 E-value=7.5e-21 Score=173.27 Aligned_cols=226 Identities=11% Similarity=0.051 Sum_probs=161.6
Q ss_pred ccCCCCCCCCCCCCCcee--cccCCC-----CCCchHHHHHHHHHhC--CceEEe-cCCeeEEEecCHHHHHHHHHhCCc
Q 040285 27 FKSGSRRLPPGPTPYPVI--GNLLEL-----GDKPHKSLAKLAKIHG--PIMSLK-FGQVTTVVFSSAAMAKEILQNQDT 96 (298)
Q Consensus 27 ~~~~~~~~pPgP~~~Pil--Gnl~~l-----~~~~~~~~~~~~~~yG--~i~~~~-~g~~~~vvv~~~~~~~evL~~~~~ 96 (298)
++.++.++||||++.|.. +.+..+ .++|+..+.+|+ +|| +||+++ +| ++|+++|+++++++|.+ ..
T Consensus 5 ~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~ 80 (415)
T 2zwu_A 5 TIQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YR 80 (415)
T ss_dssp ------CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TT
T ss_pred cccCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-cc
Confidence 345667899999999975 644322 246889999995 899 999999 77 79999999999999964 55
Q ss_pred cccccC-ccccccccccCCCC-cccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehH
Q 040285 97 SFCNRT-IPDAIYAHGHHEFG-MPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIG 174 (298)
Q Consensus 97 ~f~~Rp-~~~~~~~~~~~~~~-~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~ 174 (298)
.|++|+ ........ . +.+ ++ ..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. | ++|+.
T Consensus 81 ~f~~~~~~~~~~~~~-~-~~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~---~-~~d~~ 152 (415)
T 2zwu_A 81 HFSSECPFIPREAGE-A-YDFIPT-SMDPPEQRQFRALA-NQVVGMPVVDKLENRIQELACSLIESLRPQ---G-QCNFT 152 (415)
T ss_dssp TEETTSCSSSHHHHH-H-CCCTTT-TCCTTTTHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHGGG---T-EEEHH
T ss_pred ccCCCcccCCCCccc-c-ccccCc-cCCCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C-CccHH
Confidence 799887 22211111 1 234 43 45899999999998 689999999999999999999999998642 3 79999
Q ss_pred HHH-HHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHH
Q 040285 175 QAA-FDTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDR 253 (298)
Q Consensus 175 ~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
..+ ..+++++|+.+ ||.+.+. ..++.+....++.. ..|. +..+..+++.+++.+
T Consensus 153 ~~~~~~~~~~vi~~~-~G~~~~~-----~~~~~~~~~~~~~~--------~~P~-----------~~~~~~~~~~~~~~~ 207 (415)
T 2zwu_A 153 EDYAEPFPIRIFMLL-AGLPEED-----IPHLKYLTDQMTRP--------DGSM-----------TFAEAKEALYDYLIP 207 (415)
T ss_dssp HHTTTHHHHHHHHHH-HTCCGGG-----HHHHHHHHHHHHSC--------CSSS-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCCHHH-----HHHHHHHHHHHHhc--------cCHH-----------HHHHHHHHHHHHHHH
Confidence 765 78999999999 9987642 23454444433221 1121 344566678888889
Q ss_pred HHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 254 LIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 254 ~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
+|+++++. . ..|+++.|+++.+ ++..+|+++|.+.+
T Consensus 208 ~i~~r~~~----~---~~dll~~ll~~~~-~~~~l~~~~i~~~~ 243 (415)
T 2zwu_A 208 IIEQRRQK----P---GTDAISIVANGQV-NGRPITSDEAKRMC 243 (415)
T ss_dssp HHHHHHHS----C---CSSHHHHHHTCEE-TTEECCHHHHHHHH
T ss_pred HHHHHHhC----C---CCCHHHHHHHhhh-cCCCCCHHHHHHHH
Confidence 99888752 1 2699999998654 23459999987654
No 38
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.85 E-value=1.1e-20 Score=171.59 Aligned_cols=222 Identities=14% Similarity=0.169 Sum_probs=159.7
Q ss_pred CCCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEec-CCee-EEEecCHHHHHHHHHhCCccccccCccccc--
Q 040285 32 RRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF-GQVT-TVVFSSAAMAKEILQNQDTSFCNRTIPDAI-- 107 (298)
Q Consensus 32 ~~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~-~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~-- 107 (298)
.+.+|||+++|+.++ ...+|+..+.++. +||||+++++ |+.+ +|+++||++++++|.+ ..|++++.....
T Consensus 7 ~~~~~~~~~~p~~~~---~~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDL---PGSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp -CCSCCEEECCCCCC---CTTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhhccCCCCCCCCcc---cccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 356899989999887 3477899898885 8999999996 5655 9999999999999986 468888643211
Q ss_pred --cc-cccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHH
Q 040285 108 --YA-HGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLN 183 (298)
Q Consensus 108 --~~-~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ 183 (298)
.. ....+.+++ ..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. ++++|+...+ ..++++
T Consensus 81 ~~~~~~~~~~~~l~-~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~d~~~~~~~~~~~~ 155 (406)
T 1s1f_A 81 RLAPHFIPARGAVG-FLDPPDHTRLRRSV-AAAFTARGVERVRERSRGMLDELVDAMLRA---GPPADLTEAVLSPFPIA 155 (406)
T ss_dssp BSSSSCSSCTTSGG-GCCTTHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHHHH---CSSEEHHHHTTTHHHHH
T ss_pred cccccccccccccc-cCCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHHHHHhhHhHHH
Confidence 11 211124554 46899999999998 688999999999999999999999999742 4589998666 479999
Q ss_pred HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040285 184 LISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQ 263 (298)
Q Consensus 184 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 263 (298)
+|+. +||.+.+. ...+......++.... | + ++..+..+.+.+++.++|+++++.
T Consensus 156 vi~~-~~G~~~~~-----~~~~~~~~~~~~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~i~~r~~~-- 209 (406)
T 1s1f_A 156 VICE-LMGVPATD-----RHSMHTWTQLILSSSH--------G-----A-----EVSERAKNEMNAYFSDLIGLRSDS-- 209 (406)
T ss_dssp HHHH-HHTCCGGG-----HHHHHHHHHHHHHHHT--------T-----C-----CCCHHHHTHHHHHHHHHHHTSCCS--
T ss_pred HHHH-HhCCCHHH-----HHHHHHHHHHHHhccC--------C-----H-----HHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 9998 59986542 2345444444433211 1 0 122345556777788777766431
Q ss_pred cCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 264 ERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 264 ~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
. .+|+++.|+++.++ ..+|+++|.+.+
T Consensus 210 --~---~~d~l~~ll~~~~~--~~ls~~el~~~~ 236 (406)
T 1s1f_A 210 --A---GEDVTSLLGAAVGR--DEITLSEAVGLA 236 (406)
T ss_dssp --C---CCSHHHHHHHHHHT--TSSCHHHHHHHH
T ss_pred --C---CCCHHHHHHHhhcc--cCCCHHHHHHHH
Confidence 1 26999999986532 459999987654
No 39
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.85 E-value=7.5e-20 Score=166.00 Aligned_cols=218 Identities=13% Similarity=0.163 Sum_probs=157.1
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCc--c-cc---cc
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTI--P-DA---IY 108 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~--~-~~---~~ 108 (298)
|.++.+|+- ..+..+|+..+.+| ++||||+++++ |+.++|+++|+++++++|.++ .|++|+. . +. ..
T Consensus 6 ~~~p~~~~~---~~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~ 79 (403)
T 3aba_A 6 ADAPTVPKA---RSCPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVT 79 (403)
T ss_dssp -CCCBCCCC---CSSTTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCC
T ss_pred CCcccCCCC---cccccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccc
Confidence 444445542 33457788899999 89999999998 899999999999999999875 4888753 1 11 11
Q ss_pred ccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHH
Q 040285 109 AHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISN 187 (298)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~ 187 (298)
... .+.++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ .++++|+...+ ..+++++|+.
T Consensus 80 ~~~-~~~~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~d~~~~~~~~~~~~vi~~ 153 (403)
T 3aba_A 80 QKP-GRGSL-LWQDEPEHTSDRKLL-AKEFTVRRMQALRPNIQRIVDEHLDAIEA---RGGPVDLVKTFANAVPSMVISD 153 (403)
T ss_dssp CCC-CTTCC-TTCCTTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHHHHHHH
T ss_pred ccc-ccccc-ccCCchhHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH
Confidence 111 12344 446899999999998 78999999999999999999999999975 25689998666 4799999998
Q ss_pred HHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 040285 188 TIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDF 267 (298)
Q Consensus 188 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 267 (298)
+||.+.+. ...+......++.. ..| + ++..+..+++.+++.++|+++++. .
T Consensus 154 -~~G~~~~~-----~~~~~~~~~~~~~~--------~~~--------p--~~~~~~~~~~~~~~~~~i~~r~~~----~- 204 (403)
T 3aba_A 154 -LFGVPVER-----RAEFQDIAEAMMRV--------DQD--------A--AATEAAGMRLGGLLYQLVQERRAN----P- 204 (403)
T ss_dssp -HHTCCGGG-----HHHHHHHHHHHSBS--------SSC--------H--HHHHHHHHHHHHHHHHHHHHHHHS----C-
T ss_pred -HcCCCHHH-----HHHHHHHHHHHHhc--------cCc--------H--HHHHHHHHHHHHHHHHHHHHHHhC----C-
Confidence 79986531 23343333222110 000 1 455667778888999999888753 1
Q ss_pred CCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 268 TESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 268 ~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.+|+++.|+++.+ ++..+|+++|.+.+
T Consensus 205 --~~dll~~ll~~~~-~~~~l~~~ei~~~~ 231 (403)
T 3aba_A 205 --GDDLISALITTED-PDGVVDDMFLMNAA 231 (403)
T ss_dssp --CSSHHHHHHTSCC-TTCCCSHHHHHHHH
T ss_pred --CCCHHHHHHhhcc-CCCCCCHHHHHHHH
Confidence 2699999998754 33469999988754
No 40
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.84 E-value=1.3e-19 Score=166.75 Aligned_cols=219 Identities=11% Similarity=0.031 Sum_probs=154.2
Q ss_pred chHHHHHHHHHhCCce--EEe-cCCeeEEEecCHHHHHHHHHhCCccccccCcccccccccc---------C----CCCc
Q 040285 54 PHKSLAKLAKIHGPIM--SLK-FGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGH---------H----EFGM 117 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~--~~~-~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~---------~----~~~~ 117 (298)
|+..+.++ ++||||+ +++ +|+.++++|+++++++++|.+. ..|++|+.........+ + ..+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~- 123 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVES- 123 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCC-
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccC-
Confidence 77888888 7899999 998 7889999999999999999665 78999875433211100 0 123
Q ss_pred ccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCC
Q 040285 118 PWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLAD 196 (298)
Q Consensus 118 ~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~ 196 (298)
++..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. ++++|+...+ ..+++++|+++ ||.+.+
T Consensus 124 l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~~~~dl~~~~~~~~~~~vi~~l-~G~~~~- 197 (450)
T 3tkt_A 124 LVQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGA---GEEGDFMALVAAPYPLHVVMQI-LGVPPE- 197 (450)
T ss_dssp GGGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHT---CSEEEHHHHTTTHHHHHHHHHH-TTCCGG-
T ss_pred cccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEeeHHHHHHHHHHHHHHHH-cCCChh-
Confidence 4557899999999998 789999999999999999999999999752 6789988877 68999999996 896532
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCccccccccccCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHH
Q 040285 197 PTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLD-LQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLD 275 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~ 275 (298)
+...+.+....++... ..++.|+..++. .....++..+...++.+++.++|+++++. . .+|+++
T Consensus 198 ----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~dll~ 262 (450)
T 3tkt_A 198 ----DEPKMLFLTQQMFGGQ----DEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRN----P---TDDVAT 262 (450)
T ss_dssp ----GHHHHHHHHHTTSCCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHH
T ss_pred ----HHHHHHHHHHHHhccc----cchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHH
Confidence 2344444444332111 112333322221 12234566777888899999999888753 1 269999
Q ss_pred HHhhccccCCCCCCHHhhhhhc
Q 040285 276 ALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 276 ~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
.|+++.+ ++..+|+++|.+.+
T Consensus 263 ~ll~~~~-~~~~ls~~ei~~~~ 283 (450)
T 3tkt_A 263 VIANAVV-DGEPMSDRDTAGYY 283 (450)
T ss_dssp HHHTCEE-TTEECCHHHHHHHH
T ss_pred HHHhccc-cCCCCCHHHHHHHH
Confidence 9998764 33459999987654
No 41
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.84 E-value=6.5e-21 Score=176.07 Aligned_cols=157 Identities=14% Similarity=0.180 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCC-CceecccCCCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcc-cc
Q 040285 29 SGSRRLPPGPTP-YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIP-DA 106 (298)
Q Consensus 29 ~~~~~~pPgP~~-~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~-~~ 106 (298)
.+..+.||||++ +|++||++++.++++..+.+|+++||++|++++|+.++||++||++++++|.++.. |+.++.. ..
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~~ 92 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQVL 92 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHHH
Confidence 344568999998 99999999887779999999999999999999999999999999999999987543 4433321 11
Q ss_pred ccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHh--hCCcceehHHHHHHHHHHH
Q 040285 107 IYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENC--RAGTAIHIGQAAFDTTLNL 184 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~vd~~~~~~~~t~~i 184 (298)
...+ .+ .++. ..+|+.| ||++ +++|+++.++.+.+.+.+++..+++.+.... .....+++...+...++++
T Consensus 93 ~~~~-~g-~~~~-~~~~~~~---R~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
T 3b98_A 93 MKRI-FN-MILP-SHNPESE---KKRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKT 165 (475)
T ss_dssp HHHT-TC-CCCT-TCCHHHH---HHHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHHH
T ss_pred HHHH-hC-CCCC-CCChHHH---HHHH-HHHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHHH
Confidence 1222 12 2333 3467766 4665 5689999999999999898888877654321 0112578888888888888
Q ss_pred HHHHHhccC
Q 040285 185 ISNTIFSID 193 (298)
Q Consensus 185 i~~~~fG~~ 193 (298)
++...||.+
T Consensus 166 ~~~~~~g~~ 174 (475)
T 3b98_A 166 GYLTVFGAE 174 (475)
T ss_dssp HHHHHHCCT
T ss_pred hhhheeCCc
Confidence 888888853
No 42
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.84 E-value=3.4e-19 Score=162.33 Aligned_cols=208 Identities=13% Similarity=0.131 Sum_probs=154.3
Q ss_pred CCCCchHHHHHHHHHhCCceEEecC-CeeEEEecCHHHHHHHHHhCCccccccCccccccccc-------cCCCCcccCC
Q 040285 50 LGDKPHKSLAKLAKIHGPIMSLKFG-QVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHG-------HHEFGMPWLP 121 (298)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~-------~~~~~~~~~~ 121 (298)
+..+|+..+.+|+++ |||+++++| +.++|+++|+++++++|.++ .|++++.......+. ..+.++ +..
T Consensus 27 ~~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 102 (417)
T 3tyw_A 27 CPFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPF-IRT 102 (417)
T ss_dssp STTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCG-GGC
T ss_pred cccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccch-hhc
Confidence 357899999999988 999999997 48999999999999999886 788875322111110 112343 556
Q ss_pred CChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCch
Q 040285 122 VATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSK 200 (298)
Q Consensus 122 ~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~ 200 (298)
+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. |+++|+...+ ..++.++|+.+ ||.+.+..
T Consensus 103 dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~--- 174 (417)
T 3tyw_A 103 DAPEHTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLAA---GGPVDLVSAYANAVSTSVICEL-LGIPRHDL--- 174 (417)
T ss_dssp CHHHHHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHHH---CSSEEHHHHTHHHHHHHHHHHH-HTCCTTTT---
T ss_pred CCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhh---CCCcchHHHHHHHHHHHHHHHH-hCCCHHHH---
Confidence 899999999998 789999999999999999999999999763 6789999987 57899999997 99877643
Q ss_pred hHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhc
Q 040285 201 TAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKI 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~ 280 (298)
..+......++. ..+ . .++..+....+.+++.++|+++++. ..+|+++.|+++
T Consensus 175 --~~~~~~~~~~~~---------~~~------~---~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~d~l~~ll~~ 227 (417)
T 3tyw_A 175 --EFFRDVTRISGS---------RNS------T---AEQVSEALGGLFGLLGGLVAERREE-------PRDDLISKLVTD 227 (417)
T ss_dssp --THHHHHHHHHHS---------SSS------C---TTHHHHHHHHHHHHHHHHHHHHHSS-------CCSSHHHHHHHH
T ss_pred --HHHHHHHHHHhc---------ccC------C---HHHHHHHHHHHHHHHHHHHHHHhhC-------CCCCHHHHHHHh
Confidence 123322222211 011 0 1245667778888999999887652 136999999987
Q ss_pred cccCCCCCCHHhhhhhc
Q 040285 281 CEDKSVEIDINDIKHLF 297 (298)
Q Consensus 281 ~~~~~~~lt~~~i~~~~ 297 (298)
.++ ++.++++++.+.+
T Consensus 228 ~~~-~~~ls~~el~~~~ 243 (417)
T 3tyw_A 228 HLV-PGNVTTEQLLSTL 243 (417)
T ss_dssp TTT-TTSSCHHHHHHHH
T ss_pred ccc-CCCCCHHHHHHHH
Confidence 654 3359999987654
No 43
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.84 E-value=4.4e-20 Score=167.76 Aligned_cols=212 Identities=18% Similarity=0.275 Sum_probs=153.3
Q ss_pred CCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCc--ccc----cc--cccc--CCCCcc
Q 040285 49 ELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTI--PDA----IY--AHGH--HEFGMP 118 (298)
Q Consensus 49 ~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~--~~~----~~--~~~~--~~~~~~ 118 (298)
.+.++||..+.+| ++||||+++++|+.++|+++||++++++|.++. +++++. ... .. .+.. ...++
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 87 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM- 87 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-
Confidence 4557899999999 999999999999999999999999999998754 455542 110 00 0100 12243
Q ss_pred cCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHH-HHHHHHHHHHHhccCCCCC
Q 040285 119 WLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAF-DTTLNLISNTIFSIDLADP 197 (298)
Q Consensus 119 ~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~ 197 (298)
+..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. ..|+++|+...+. .+++++|+. +||.+.+
T Consensus 88 ~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-- 162 (408)
T 1odo_A 88 FTAYGPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAEL-PAGEPVDLRQELAYPLPIAVIGH-LMGVPQD-- 162 (408)
T ss_dssp GGCCHHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHS-CTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH--
T ss_pred cccCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcchHHHHhhhhHHHHHHH-HhCCCHH--
Confidence 557899999999998 789999999999999999999999999754 2366899998886 599999996 7997542
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHH
Q 040285 198 TSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDAL 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~l 277 (298)
+...+......++.. . . . .++..+....+.+++.++|+++++. . .+|+++.|
T Consensus 163 ---~~~~~~~~~~~~~~~----~----------~--~--~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~d~l~~l 214 (408)
T 1odo_A 163 ---RRDGFRALVDGVFDT----T----------L--D--QAEAQANTARLYEVLDQLIAAKRAT----P---GDDMTSLL 214 (408)
T ss_dssp ---HHHHHHHHHHHHHCT----T----------C--C--HHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHH
T ss_pred ---HHHHHHHHHHHHhcc----c----------C--C--HHHHHHHHHHHHHHHHHHHHHHhhC----C---CCCHHHHH
Confidence 223444444333210 0 0 0 1345667778888999999888752 1 26999999
Q ss_pred hhccccC--CCCCCHHhhhhhc
Q 040285 278 LKICEDK--SVEIDINDIKHLF 297 (298)
Q Consensus 278 L~~~~~~--~~~lt~~~i~~~~ 297 (298)
+++.+++ +..+|+++|.+.+
T Consensus 215 l~~~~~~~~~~~l~~~ei~~~~ 236 (408)
T 1odo_A 215 IAARDDEGDGDRLSPEELRDTL 236 (408)
T ss_dssp HHHHCC-----CCCHHHHHHHH
T ss_pred HHhcccccccCCCCHHHHHHHH
Confidence 9875432 3459999988754
No 44
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.84 E-value=1.7e-19 Score=165.26 Aligned_cols=229 Identities=14% Similarity=0.115 Sum_probs=157.2
Q ss_pred CCCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEe--------cCCeeEEEecCHHHHHHHHHhCCccccccCc
Q 040285 32 RRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLK--------FGQVTTVVFSSAAMAKEILQNQDTSFCNRTI 103 (298)
Q Consensus 32 ~~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~--------~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~ 103 (298)
...||+|.++++.+....-.++|+..+.++ ++||||+++. +|+.++++++++++++++|.+ ...|++++.
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~-~~~fs~~~~ 94 (433)
T 3ivy_A 17 VPSPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRH-SDVFSSYEN 94 (433)
T ss_dssp ---CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHC-TTTEESTTT
T ss_pred cCCCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcC-hhhccCCcc
Confidence 345777777777655433346799999999 8899999999 677899999999999999965 477998875
Q ss_pred ccccc--------ccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHH
Q 040285 104 PDAIY--------AHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ 175 (298)
Q Consensus 104 ~~~~~--------~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~ 175 (298)
..... .......++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~ 168 (433)
T 3ivy_A 95 GVIPRFKNDIAREDIEVQRFVM-LNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAA----AGSGDFVE 168 (433)
T ss_dssp CSCCCCCTTCCHHHHHGGGGSG-GGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHH----HCEEEHHH
T ss_pred cccccccccccccccccccCCc-cccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh----CCCeeHHH
Confidence 43321 111112344 457899999999999 78999999999999999999999999874 34799988
Q ss_pred HH-HHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHH
Q 040285 176 AA-FDTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRL 254 (298)
Q Consensus 176 ~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
.+ ..+++++|+++ ||.+. .+...+.+.... +.. ...|.+.. .+..+...++.+++.++
T Consensus 169 ~~~~~~~~~vi~~l-~G~~~-----~~~~~~~~~~~~----~~~----~~~p~~~~-------~~~~~~~~~~~~~~~~~ 227 (433)
T 3ivy_A 169 QVSCELPLQAIAGL-LGVPQ-----EDRGKLFHWSNE----MTG----NEDPEYAH-------IDPKASSAELIGYAMKM 227 (433)
T ss_dssp HTTSHHHHHHHHHH-HTCCH-----HHHHHHHHHHTT----CSC----CCCGGGTT-------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCH-----HHHHHHHHHHHH----Hhc----cCCchhhh-------HHHHHHHHHHHHHHHHH
Confidence 87 99999999996 89532 122233222111 111 12232111 13445667788888888
Q ss_pred HHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 255 IDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 255 i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
|+++++. ..+|+++.|+++.++ +..+|+++|.+.+
T Consensus 228 i~~r~~~-------~~~dll~~ll~~~~~-~~~ls~~ei~~~~ 262 (433)
T 3ivy_A 228 AEEKAKN-------PADDIVTQLIQADID-GEKLSDDEFGFFV 262 (433)
T ss_dssp HHHC--------------CHHHHHSCC---CCCCCHHHHHHHH
T ss_pred HHHHhcC-------CCCcHHHHHHhhhcC-CCCCCHHHHHHHH
Confidence 8877642 126999999987543 3469999988754
No 45
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.83 E-value=2.8e-19 Score=163.87 Aligned_cols=214 Identities=14% Similarity=0.065 Sum_probs=157.8
Q ss_pred CCchHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHhCCccccccCcc--c-cccccccCCCCcccCC
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQNQDTSFCNRTIP--D-AIYAHGHHEFGMPWLP 121 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~--~-~~~~~~~~~~~~~~~~ 121 (298)
.+|+..+.+|. +||||+++++| +.++|+++||++++++|.++ ..|++|+.. . ....+...+.++++ .
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~-~ 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIV-L 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGG-C
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhcccccc-C
Confidence 45788899995 79999999986 67899999999999999875 579998742 1 11222111234444 5
Q ss_pred CChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCch
Q 040285 122 VATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSK 200 (298)
Q Consensus 122 ~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~ 200 (298)
+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+.. +++++|+...+ ..+++++|+.+ ||.+.+.
T Consensus 121 dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~-~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~---- 193 (435)
T 2wm5_A 121 DDPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIANN-PDRQADLVSELAGPLPLQIICDM-MGIPKAD---- 193 (435)
T ss_dssp CTTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEHHHHTTTHHHHHHHHHH-HTCCGGG----
T ss_pred CcHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcEehHHHHHHHHHHHHHHHH-cCCCHHH----
Confidence 899999999998 7899999999999999999999999998642 24589998766 78999999999 9987642
Q ss_pred hHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhc
Q 040285 201 TAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKI 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~ 280 (298)
...+.+....++... .|.+ .+ ..++..+..+++.+++.++|+++++. . .+|+++.|+++
T Consensus 194 -~~~~~~~~~~~~~~~--------~p~~--~~---~~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~dll~~ll~~ 252 (435)
T 2wm5_A 194 -HQRIFHWTNVILGFG--------DPDL--AT---DFDEFMQVSADIGAYATALAEDRRVN----H---HDDLTSSLVEA 252 (435)
T ss_dssp -HHHHHHHHHHHHHTT--------CTTS--CC---CHHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHC
T ss_pred -HHHHHHHHHHHhccC--------Ccch--hh---hHHHHHHHHHHHHHHHHHHHHHHhcC----C---CCCHHHHHHhh
Confidence 235555555544321 1321 11 12456677788899999999988752 1 26999999987
Q ss_pred cccCCCCCCHHhhhhhc
Q 040285 281 CEDKSVEIDINDIKHLF 297 (298)
Q Consensus 281 ~~~~~~~lt~~~i~~~~ 297 (298)
.++ +..+|+++|.+.+
T Consensus 253 ~~~-~~~ls~~ei~~~~ 268 (435)
T 2wm5_A 253 EVD-GERLSSREIASFF 268 (435)
T ss_dssp CBT-TBCCCHHHHHHHH
T ss_pred hcc-CCCCCHHHHHHHH
Confidence 542 3459999987654
No 46
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.83 E-value=1.8e-19 Score=163.10 Aligned_cols=207 Identities=14% Similarity=0.176 Sum_probs=154.5
Q ss_pred CCCCchHHHHHHHHHh--CCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhHH
Q 040285 50 LGDKPHKSLAKLAKIH--GPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWR 127 (298)
Q Consensus 50 l~~~~~~~~~~~~~~y--G~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk 127 (298)
+.++|+..+.+|+++| |||+++++|+ ++++++|+++++++| ++.+.|++|+..........+ ...++..+|+.|+
T Consensus 17 ~~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~~~ 93 (398)
T 4fb2_A 17 PDGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETGEF-ELMMAGQDDPVHK 93 (398)
T ss_dssp TTSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC----C-CCTTTTCCTTHHH
T ss_pred hhcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCccc-ccCcccCCchHHH
Confidence 4578999999999999 9999999986 699999999999999 567789998754432221111 2234667899999
Q ss_pred HHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHH-HHHHHHHHHHHHHHhccCCCCCCchhHHHHH
Q 040285 128 NLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ-AAFDTTLNLISNTIFSIDLADPTSKTAREFK 206 (298)
Q Consensus 128 ~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 206 (298)
++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+.. ....+++++++. +||.+.+ +...+.
T Consensus 94 ~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-----~~~~~~ 162 (398)
T 4fb2_A 94 KYRQLV-AKPFSPEATDLFTEQLRQSTNDLIDARIE----LGEGDAATWLANEIPARLTAI-LLGLPPE-----DGDTYR 162 (398)
T ss_dssp HHHHHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTT----TTEEEHCCCCCTTHHHHHHHH-HTTSCGG-----GHHHHH
T ss_pred HHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH-----HHHHHH
Confidence 999998 78999999999999999999999988853 33688644 446899999999 6897542 234555
Q ss_pred HHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCC
Q 040285 207 QTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSV 286 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~ 286 (298)
+....++. |. . .++..+..+++.+++.++|+++++. . .+|+++.|+++.++ +.
T Consensus 163 ~~~~~~~~-----------~~------~--~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~d~l~~ll~~~~~-~~ 215 (398)
T 4fb2_A 163 RWVWAITH-----------VE------N--PEEGAEIFAELVAHARTLIAERRTN----P---GNDIMSRVIMSKID-GE 215 (398)
T ss_dssp HHHHHHHH-----------CC------C--HHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHCCBT-TB
T ss_pred HHHHHHhc-----------CC------C--HHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHHHcccC-CC
Confidence 44444332 10 0 1255667788889999999988762 1 36999999987653 34
Q ss_pred CCCHHhhhhhc
Q 040285 287 EIDINDIKHLF 297 (298)
Q Consensus 287 ~lt~~~i~~~~ 297 (298)
.+|+++|.+.+
T Consensus 216 ~l~~~~i~~~~ 226 (398)
T 4fb2_A 216 SLSEDDLIGFF 226 (398)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 59999987654
No 47
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.83 E-value=2.3e-19 Score=163.30 Aligned_cols=207 Identities=14% Similarity=0.227 Sum_probs=152.0
Q ss_pred CCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccc-----cccccCCCCcccCCCCh
Q 040285 50 LGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAI-----YAHGHHEFGMPWLPVAT 124 (298)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~-----~~~~~~~~~~~~~~~g~ 124 (298)
+..+|+..+.+| ++|||++++++|+.++|+++|+++++++|.++. |++|+..... ......+.++ +..+|+
T Consensus 18 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~ 93 (411)
T 3a4g_A 18 FWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMM-ILMDPP 93 (411)
T ss_dssp GTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCG-GGCCTT
T ss_pred hhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCccccccc-ccCCch
Confidence 457899999999 999999999999999999999999999998764 9888743211 1111112344 446899
Q ss_pred hHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHH-HHHHHHHHHHHHHhccCCCCCCchhHH
Q 040285 125 LWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQA-AFDTTLNLISNTIFSIDLADPTSKTAR 203 (298)
Q Consensus 125 ~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~ 203 (298)
.|+++||++ ++.|+++.++.+.+.+.++++.+++.|.+ ++++|+... ...+++++|+.+ ||.+.+. ..
T Consensus 94 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~-----~~ 162 (411)
T 3a4g_A 94 DHTRLRKLV-GRSFTVRRMNELEPRITEIADGLLAGLPT----DGPVDLMREYAFQIPVQVICEL-LGVPAED-----RD 162 (411)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCS----SSCEEHHHHTTTTHHHHHHHHH-HTCCGGG-----HH
T ss_pred HHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHHHHHHH-hCCCHHH-----HH
Confidence 999999998 78999999999999999999999998853 357999754 568999999975 9986531 23
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhcccc
Q 040285 204 EFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICED 283 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~ 283 (298)
.+......++. ..| | ++..+..+++.+++.++|+++++. . .+|+++.|+++.++
T Consensus 163 ~~~~~~~~~~~---------~~p-----~-----~~~~~~~~~~~~~~~~~i~~r~~~----~---~~d~l~~ll~~~~~ 216 (411)
T 3a4g_A 163 DFSAWSSVLVD---------DSP-----A-----DDKNAAMGKLHGYLSDLLERKRTE----P---DDALLSSLLAVSDE 216 (411)
T ss_dssp HHHHHHHHHTT---------SSC-----T-----TTHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHCCCT
T ss_pred HHHHHHHHHhc---------cCC-----H-----HHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHHHhhcc
Confidence 44433332211 112 1 134456677888899999888752 1 26999999987542
Q ss_pred CCCCCCHHhhhhhc
Q 040285 284 KSVEIDINDIKHLF 297 (298)
Q Consensus 284 ~~~~lt~~~i~~~~ 297 (298)
++..+|+++|.+.+
T Consensus 217 ~~~~ls~~ei~~~~ 230 (411)
T 3a4g_A 217 DGDRLSQEELVAMA 230 (411)
T ss_dssp TCCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 34469999987754
No 48
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.82 E-value=6.7e-19 Score=160.46 Aligned_cols=209 Identities=13% Similarity=0.154 Sum_probs=152.4
Q ss_pred CCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCcc-cccccccc--CCCCcccCCCChh
Q 040285 50 LGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTIP-DAIYAHGH--HEFGMPWLPVATL 125 (298)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~-~~~~~~~~--~~~~~~~~~~g~~ 125 (298)
+..+|+..+.+| ++||||+++++ |+.++|+++||++++++|.++ .|++++.. .....+.. .+.++ +..+|+.
T Consensus 35 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~ 110 (417)
T 2y5n_A 35 HGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGL-LSMDPPE 110 (417)
T ss_dssp SSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSG-GGCCTTH
T ss_pred hccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccC-ccCCchH
Confidence 457899999999 89999999997 899999999999999999875 48877643 21111111 12354 4568999
Q ss_pred HHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHH-HHHHHHHHHHHhccCCCCCCchhHHH
Q 040285 126 WRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAF-DTTLNLISNTIFSIDLADPTSKTARE 204 (298)
Q Consensus 126 Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~~~ 204 (298)
|+++||++ ++.|+++.++.+.+.+.++++.+++.|.+. ++++|+...+. .+++++|+. +||.+.+. ...
T Consensus 111 h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~-----~~~ 180 (417)
T 2y5n_A 111 HSRLRRLV-VKAFTARRAESLRPRAREIAHELVDQMAAT---GQPADLVAMFARQLPVRVICE-LLGVPSAD-----HDR 180 (417)
T ss_dssp HHHHHHHH-HHHSCHHHHHHTHHHHHHHHHHHHHHHHHH---CSSEEHHHHTTTTHHHHHHHH-HHTCCGGG-----HHH
T ss_pred HHHHHHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeeHHHHHHHHhHHHHHHH-HcCCCHHH-----HHH
Confidence 99999998 688999999999999999999999999741 33799987664 699999998 69986531 233
Q ss_pred HHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccC
Q 040285 205 FKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDK 284 (298)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~ 284 (298)
+...... +.. .+. .| .++..+..+++.+++.++|+++++. . .+|+++.|+++.+ +
T Consensus 181 ~~~~~~~----~~~-----~~~----~~----~~~~~~~~~~l~~~~~~~i~~r~~~----~---~~dll~~ll~~~~-~ 235 (417)
T 2y5n_A 181 FTRWSGA----FLS-----TAE----VT----AEEMQEAAEQAYAYMGDLIDRRRKE----P---TDDLVSALVQARD-Q 235 (417)
T ss_dssp HHHHHHT----TST-----TCC----CC----HHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHCCB-T
T ss_pred HHHHHHH----Hhc-----ccC----CC----HHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHHhhhc-c
Confidence 3332221 111 100 11 1356667778889999999888753 1 2699999998754 2
Q ss_pred CCCCCHHhhhhhc
Q 040285 285 SVEIDINDIKHLF 297 (298)
Q Consensus 285 ~~~lt~~~i~~~~ 297 (298)
+..+|+++|.+.+
T Consensus 236 ~~~ls~~ei~~~~ 248 (417)
T 2y5n_A 236 QDSLSEQELLDLA 248 (417)
T ss_dssp TBCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3469999988754
No 49
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.82 E-value=4.9e-19 Score=160.55 Aligned_cols=211 Identities=17% Similarity=0.197 Sum_probs=151.2
Q ss_pred CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccccc---cc-ccCCCCcccCCCChhHH
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIY---AH-GHHEFGMPWLPVATLWR 127 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~---~~-~~~~~~~~~~~~g~~Wk 127 (298)
++|+..+.+| ++||||+++++|+.++|+++|+++++++|.++ ..|++|+...... .+ ...+.++ +..+|+.|+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h~ 89 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMM-LFQNQPDHR 89 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSG-GGCCTTHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcch-hhcCCchHH
Confidence 6788899888 68999999999999999999999999999887 6888887422211 11 0112344 556899999
Q ss_pred HHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHH-HHHHHHHHHHHHHhccCCCCCCchhHHHHH
Q 040285 128 NLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQA-AFDTTLNLISNTIFSIDLADPTSKTAREFK 206 (298)
Q Consensus 128 ~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 206 (298)
++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+... ...++.++++.+ ||.+.+ +...+.
T Consensus 90 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~~-----~~~~~~ 158 (404)
T 3ejb_B 90 RLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQG----KKKMEVISDFAFPLASFVIANI-IGVPEE-----DREQLK 158 (404)
T ss_dssp HHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTHHHHHHHHHHHH-HTCCGG-----GHHHHH
T ss_pred HHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHHHH-cCCCHH-----HHHHHH
Confidence 999999 78999999999999999999999998853 457898554 556999999985 897553 223444
Q ss_pred HHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCC
Q 040285 207 QTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSV 286 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~ 286 (298)
+....+..... .|. .....++..+...++.+++.++|+++++. ..+|+++.|+ +.+ ++.
T Consensus 159 ~~~~~~~~~~~-------~p~-----~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll-~~~-~~~ 217 (404)
T 3ejb_B 159 EWAASLIQTID-------FTR-----SRKALTEGNIMAVQAMAYFKELIQKRKRH-------PQQDMISMLL-KGR-EKD 217 (404)
T ss_dssp HHHHHHHGGGS-------TTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHH-HC-----
T ss_pred HHHHHHHHhcc-------CCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcchHHHHHH-hcc-cCC
Confidence 44433322211 121 11223456677788889999999888741 2369999999 433 234
Q ss_pred CCCHHhhhhhc
Q 040285 287 EIDINDIKHLF 297 (298)
Q Consensus 287 ~lt~~~i~~~~ 297 (298)
.+|++++.+.+
T Consensus 218 ~ls~~el~~~~ 228 (404)
T 3ejb_B 218 KLTEEEAASTC 228 (404)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 69999987654
No 50
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.82 E-value=4.2e-19 Score=161.07 Aligned_cols=209 Identities=14% Similarity=0.199 Sum_probs=153.5
Q ss_pred CCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcc--c----ccc---cc-cc----CCC
Q 040285 50 LGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIP--D----AIY---AH-GH----HEF 115 (298)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~--~----~~~---~~-~~----~~~ 115 (298)
+..+|+..+.+| ++||||+++++|+.++|+++||++++++|.++ .|++|+.. . ... .+ .. .+.
T Consensus 12 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (404)
T 1z8o_A 12 FHVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFAT 88 (404)
T ss_dssp GTSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSS
T ss_pred cccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccc
Confidence 346799999999 99999999999999999999999999999876 68888643 1 110 11 00 123
Q ss_pred CcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCC
Q 040285 116 GMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDL 194 (298)
Q Consensus 116 ~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~ 194 (298)
++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+...+ ..+++++|+.+ ||.+.
T Consensus 89 ~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~ 161 (404)
T 1z8o_A 89 NM-GTSDPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGD----SGVVDIVDRFAHPLPIKVICEL-LGVDE 161 (404)
T ss_dssp SG-GGCCTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCS----SSEEEHHHHTTTHHHHHHHHHH-TTCCG
T ss_pred cc-ccCCCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCcchHHHHhHHHHHHHHHHH-hCCCH
Confidence 44 446899999999998 78999999999999999999999988752 5689998655 68999999985 99876
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHH
Q 040285 195 ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDML 274 (298)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 274 (298)
+.. ..+......++. . . .| . .++..+...++.+++.++|+++++. . .+|++
T Consensus 162 ~~~-----~~~~~~~~~~~~--~--~----~p--------~-~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~dll 212 (404)
T 1z8o_A 162 KYR-----GEFGRWSSEILV--M--D----PE--------R-AEQRGQAAREVVNFILDLVERRRTE----P---GDDLL 212 (404)
T ss_dssp GGT-----TTHHHHHHHHHC--C--C----GG--------G-HHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHH
T ss_pred HHH-----HHHHHHHHHHhc--c--C----Ch--------h-HHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHH
Confidence 432 123333333222 0 0 01 1 3456677788889999999888752 1 26999
Q ss_pred HHHhhccccCCCCCCHHhhhhhc
Q 040285 275 DALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 275 ~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
+.|+++.++++..+|+++|.+.+
T Consensus 213 ~~ll~~~~~~~~~l~~~ei~~~~ 235 (404)
T 1z8o_A 213 SALIRVQDDDDGRLSADELTSIA 235 (404)
T ss_dssp HHHHHCEETTTEECCHHHHHHHH
T ss_pred HHHHhhhcccCCCCCHHHHHHHH
Confidence 99998622233459999987654
No 51
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.81 E-value=3.7e-19 Score=162.00 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=155.1
Q ss_pred CCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCcccccc----
Q 040285 34 LPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIY---- 108 (298)
Q Consensus 34 ~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~---- 108 (298)
..|||.. |+- ..+..+|+..+.+|. +||||+++++ |+.++|+++||++++++|.++ .|++|+..+...
T Consensus 8 ~~~g~~~-~~~---~~~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~ 80 (413)
T 2z36_A 8 ELAGLEL-PVE---RGCPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTL 80 (413)
T ss_dssp --CCCEE-CCC---CCBTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSC
T ss_pred HhccccC-CCC---cccccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCcccccc
Confidence 3566653 431 234578999999997 8999999997 899999999999999999873 688886422111
Q ss_pred --cccc---CCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHH-HHHH
Q 040285 109 --AHGH---HEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAF-DTTL 182 (298)
Q Consensus 109 --~~~~---~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~ 182 (298)
.+.. ++.+.++..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. .++++|+...+. .+++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~~~~d~~~~~~~~~~~ 157 (413)
T 2z36_A 81 DAATLQQLRSQPPLMLGMDGAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLAT--DQRPVDLVQALSLPVPS 157 (413)
T ss_dssp CHHHHHHHTTSCCCGGGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTC--SCSSEEHHHHTTTHHHH
T ss_pred ccccccccccccccccccCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccHHHHHhhhhHH
Confidence 1110 124512446899999999998 789999999999999999999999998631 266899986654 6999
Q ss_pred HHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040285 183 NLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQR 262 (298)
Q Consensus 183 ~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 262 (298)
++|+.+ ||.+.+. ...+...... ... .. .+ ++..+..+.+.+++.++|+++++.
T Consensus 158 ~vi~~~-~G~~~~~-----~~~~~~~~~~----~~~-----~~--------~~--~~~~~~~~~~~~~~~~~i~~r~~~- 211 (413)
T 2z36_A 158 LVICEL-LGVPYTD-----HDFFQSRTTM----MVS-----RT--------SM--EDRRRAFAELRAYIDDLITRKESE- 211 (413)
T ss_dssp HHHHHH-HTCCGGG-----HHHHHHHHHH----TTC-----SS--------CH--HHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHH-hCCCHHH-----HHHHHHHHHH----Hhc-----cc--------Cc--HHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999995 9986531 2233322221 111 00 01 345667778888899998887642
Q ss_pred hcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 263 QERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 263 ~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
. .+|+++.|+++.+ ++..+|+++|.+.+
T Consensus 212 ---~---~~dll~~ll~~~~-~~~~ls~~ei~~~~ 239 (413)
T 2z36_A 212 ---P---GDDLFSRQIARQR-QEGTLDHAGLVSLA 239 (413)
T ss_dssp ---C---CSSHHHHHHHHHH-HHSCCCHHHHHHHH
T ss_pred ---C---CCCHHHHHHHhhc-CCCCCCHHHHHHHH
Confidence 1 2699999998643 23459999987754
No 52
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.81 E-value=9.3e-19 Score=159.20 Aligned_cols=209 Identities=14% Similarity=0.186 Sum_probs=152.4
Q ss_pred CCCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCc-cccc--ccccc--------C-CC
Q 040285 49 ELGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTI-PDAI--YAHGH--------H-EF 115 (298)
Q Consensus 49 ~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~-~~~~--~~~~~--------~-~~ 115 (298)
.+..+|+..+.+| ++||||+++++ |+.++|+++||++++++|.++. +++++. .... ..+.. . ..
T Consensus 14 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (411)
T 1gwi_A 14 PFVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGR 90 (411)
T ss_dssp TTCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCS
T ss_pred cccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccc
Confidence 4457899999999 99999999998 8999999999999999998754 455541 1100 00000 1 22
Q ss_pred CcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHH-HHHHHHHHHHHhccCC
Q 040285 116 GMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAF-DTTLNLISNTIFSIDL 194 (298)
Q Consensus 116 ~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~ii~~~~fG~~~ 194 (298)
++ +..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ +++++|+...+. .+++++|+. +||.+.
T Consensus 91 ~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 164 (411)
T 1gwi_A 91 SM-LTVDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA---DGGVVDLKAAFAYPLPMYVVAD-LMGIEE 164 (411)
T ss_dssp SG-GGCCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC---SCCCEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred cc-ccCCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHHhhHHHHHHHHH-HhCCCH
Confidence 44 557899999999998 78999999999999999999999998853 356899988776 599999996 799865
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHH
Q 040285 195 ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDML 274 (298)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 274 (298)
+ +...+......++.. . . . .++..+..+++.+++.++|+++++. . .+|++
T Consensus 165 ~-----~~~~~~~~~~~~~~~----~----------~--~--~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~d~l 214 (411)
T 1gwi_A 165 A-----RLPRLKVLFEKFFST----Q----------T--P--PEEVVATLTELASIMTDTVAAKRAA----P---GDDLT 214 (411)
T ss_dssp G-----GHHHHHHHHHHHHCT----T----------S--C--HHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHH
T ss_pred H-----HHHHHHHHHHHHhcc----C----------C--C--hHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHH
Confidence 3 233444444433220 0 0 0 1345667778888999999888752 1 26999
Q ss_pred HHHhhccccCCCCCCHHhhhhhc
Q 040285 275 DALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 275 ~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
+.|+++.++ +..+|+++|.+.+
T Consensus 215 ~~ll~~~~~-~~~l~~~~i~~~~ 236 (411)
T 1gwi_A 215 SALIQASEN-GDHLTDAEIVSTL 236 (411)
T ss_dssp HHHHHCCBT-TBCCCHHHHHHHH
T ss_pred HHHHHhccc-CCCCCHHHHHHHH
Confidence 999987542 3459999987754
No 53
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.81 E-value=2.2e-19 Score=166.86 Aligned_cols=164 Identities=10% Similarity=0.102 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCCceecccCCC-----CCCchHHHHHHHHHhCC-ceEEecCCeeE-------EEecCHHHHHHHHHhC--
Q 040285 30 GSRRLPPGPTPYPVIGNLLEL-----GDKPHKSLAKLAKIHGP-IMSLKFGQVTT-------VVFSSAAMAKEILQNQ-- 94 (298)
Q Consensus 30 ~~~~~pPgP~~~PilGnl~~l-----~~~~~~~~~~~~~~yG~-i~~~~~g~~~~-------vvv~~~~~~~evL~~~-- 94 (298)
.+.+.||||+|||+|||++++ .++++..+.++.++||+ ||++++|+.++ |++++++..+.++...
T Consensus 25 ~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v 104 (495)
T 3dsk_A 25 LPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKV 104 (495)
T ss_dssp CCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccc
Confidence 345689999999999999876 36789999999999999 99999999888 6667776655444321
Q ss_pred --Cccccc-cCccccccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcce
Q 040285 95 --DTSFCN-RTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAI 171 (298)
Q Consensus 95 --~~~f~~-Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v 171 (298)
...|.+ .|. ....++.......+..+|+.|+++|+++ ++.|++.. +.+.+.+.++++.+++.|.+...+++++
T Consensus 105 ~k~~~~~~~~~~--~~~l~g~~~~~~~~~~~g~~h~~~R~~~-~~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~v 180 (495)
T 3dsk_A 105 EKKDLLTGTYMP--STELTGGYRILSYLDPSEPKHEKLKNLL-FFLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKA 180 (495)
T ss_dssp ECSSCTTSSSCC--CGGGGTTCCCGGGCCTTSHHHHHHHHHH-HHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSE
T ss_pred cccccccccCCC--CccccCCCcceeeeCCCchHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 122322 222 1233321111223446899999999998 67888754 8899999999999999998654345689
Q ss_pred ehHHHHHHHHHHHHHHHHhccCCCCC
Q 040285 172 HIGQAAFDTTLNLISNTIFSIDLADP 197 (298)
Q Consensus 172 d~~~~~~~~t~~ii~~~~fG~~~~~~ 197 (298)
|+.+.+..++++++++++||.+.+..
T Consensus 181 dl~~~~~~~~~~~i~~~~~G~~~~~~ 206 (495)
T 3dsk_A 181 DFGGSSDGTAFNFLARAFYGTNPADT 206 (495)
T ss_dssp ESHHHHHHHHHHHHHHHHHSCCGGGS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 99999999999999999999877543
No 54
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.80 E-value=1.8e-18 Score=157.70 Aligned_cols=214 Identities=14% Similarity=0.244 Sum_probs=155.8
Q ss_pred CCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCc-----cc-c--ccccccC-CCCcccC
Q 040285 50 LGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTI-----PD-A--IYAHGHH-EFGMPWL 120 (298)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~-----~~-~--~~~~~~~-~~~~~~~ 120 (298)
+..+|+..+.+| ++||||++ + |+.++|+++|+++++++|.+++ |++|+. .. . ...+... +.++ +.
T Consensus 24 ~~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 97 (419)
T 1q5d_A 24 YAEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGL-FG 97 (419)
T ss_dssp TTTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHST-TT
T ss_pred hhhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhccccc-cc
Confidence 346799999999 78999999 6 6779999999999999998874 999872 11 1 1122100 1244 44
Q ss_pred CCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHH-HHHHHHHHHHHHHHhccCCCCCCc
Q 040285 121 PVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ-AAFDTTLNLISNTIFSIDLADPTS 199 (298)
Q Consensus 121 ~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~ 199 (298)
.+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+.. ....+++++|+.+ ||.+.+.
T Consensus 98 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--- 168 (419)
T 1q5d_A 98 LPPEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSG----QEEFDVVRDYAEGIPMRAISAL-LKVPAEC--- 168 (419)
T ss_dssp SCHHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTT----SSCEETTTTTGGGSHHHHHHHH-TTCCGGG---
T ss_pred CCchHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHH-hCCCHHH---
Confidence 6899999999998 78999999999999999999999999864 23799875 4589999999998 9986542
Q ss_pred hhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC-CHHHHHh
Q 040285 200 KTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESK-DMLDALL 278 (298)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-d~l~~lL 278 (298)
...+......++..... ..+|+. ....++..+...++.+++.++|+++++. . .+ |+++.|+
T Consensus 169 --~~~~~~~~~~~~~~~~~----~~~P~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~~dll~~ll 230 (419)
T 1q5d_A 169 --DEKFRRFGSATARALGV----GLVPRV-----DEETKTLVASVTEGLALLHGVLDERRRN----P---LENDVLTMLL 230 (419)
T ss_dssp --HHHHHHHHHHHHHHTTT----TTSSCC-----CSCHHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSCHHHHHH
T ss_pred --HHHHHHHHHHHHHhccc----ccccCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCCHHHHHH
Confidence 23455555555543321 134421 1123456677888899999999888752 1 25 9999999
Q ss_pred hccccCCCCCCHHhhhhhc
Q 040285 279 KICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 279 ~~~~~~~~~lt~~~i~~~~ 297 (298)
++.+ ++..+|+++|.+.+
T Consensus 231 ~~~~-~~~~l~~~ei~~~~ 248 (419)
T 1q5d_A 231 QAEA-DGSRLSTKELVALV 248 (419)
T ss_dssp HHHH-SSTTCCHHHHHHHH
T ss_pred hhhc-cCCCCCHHHHHHHH
Confidence 8753 23469999987754
No 55
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.80 E-value=4.2e-18 Score=154.16 Aligned_cols=207 Identities=10% Similarity=0.014 Sum_probs=152.6
Q ss_pred CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhHHHHH
Q 040285 51 GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLR 130 (298)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 130 (298)
..+|+..+.+|++ |||||++. . ++|+++||++++++|.++. .|++|+... .... . +.++ +..+|+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~-~-~~~l-~~~~g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQP-A-LPMM-IDMDDPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSC-C-CSSG-GGCCTTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCcc-cccCccccC-Cccc-c-cccc-cccCchHHHHHH
Confidence 3678999999987 99999654 4 8999999999999997654 799887432 2222 2 2344 446899999999
Q ss_pred HHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHH-HHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHH
Q 040285 131 KICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ-AAFDTTLNLISNTIFSIDLADPTSKTAREFKQTN 209 (298)
Q Consensus 131 r~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~ 209 (298)
|++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+.. ....+++++|+.+ ||.+.+. ...+....
T Consensus 88 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~-----~~~~~~~~ 156 (398)
T 2xkr_A 88 KLV-NAGFTRKRVKDKEASIAALCDTLIDAVCE----RGECDFVRDLAAPLPMAVIGDM-LGVRPEQ-----RDMFLRWS 156 (398)
T ss_dssp HHH-GGGSCHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTHHHHHHHHHH-HTCCGGG-----HHHHHHHH
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCccHHHHHHHHHHHHHHHHH-hCCCHHH-----HHHHHHHH
Confidence 998 78999999999999999999999998854 23799984 4568999999998 9987532 34455555
Q ss_pred HHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCC
Q 040285 210 WGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEID 289 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt 289 (298)
..++.... |. ++| ...++..+..+.+.+++.++|+++++. . .+|+++.|+++.+ ++..+|
T Consensus 157 ~~~~~~~~--------~~--~~p--~~~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~dll~~ll~~~~-~~~~ls 216 (398)
T 2xkr_A 157 DDLVTFLS--------SH--VSQ--EDFQITMDAFAAYNDFTRATIAARRAD----P---TDDLVSVLVSSEV-DGERLS 216 (398)
T ss_dssp HHHHHHHT--------SC--CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHCCB-TTBCCC
T ss_pred HHHHhccC--------cc--cch--hhHHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHHHhhc-cCCCCC
Confidence 55444321 11 111 223456677788899999999888752 1 2699999998754 234599
Q ss_pred HHhhhhhc
Q 040285 290 INDIKHLF 297 (298)
Q Consensus 290 ~~~i~~~~ 297 (298)
++++.+.+
T Consensus 217 ~~ei~~~~ 224 (398)
T 2xkr_A 217 DDELVMET 224 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 56
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.79 E-value=3.1e-18 Score=155.90 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=151.8
Q ss_pred eecccCCC-----CCCchHHHHHHHHHhCCce-----EEecCCeeEEEecCHHHHHHHHHhCCccccccCccc-ccc--c
Q 040285 43 VIGNLLEL-----GDKPHKSLAKLAKIHGPIM-----SLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPD-AIY--A 109 (298)
Q Consensus 43 ilGnl~~l-----~~~~~~~~~~~~~~yG~i~-----~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~-~~~--~ 109 (298)
+.|+.+++ ..+|+..+.+|. +||||+ ++++ .++|+++||++++++|.++ ..|++|+... ... .
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~ 86 (414)
T 2uuq_A 11 VMSHEFQLATAETWPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELE 86 (414)
T ss_dssp --CCSCCCCCTTTTTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHH
T ss_pred hhcCccCcCChhhccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCccc
Confidence 34555554 157889998884 799999 8877 6899999999999999986 6799987532 121 2
Q ss_pred c-c-cCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehH-HHHHHHHHHHHH
Q 040285 110 H-G-HHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIG-QAAFDTTLNLIS 186 (298)
Q Consensus 110 ~-~-~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~-~~~~~~t~~ii~ 186 (298)
+ . ..+.++++ .+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. +++|+. +....+++++|+
T Consensus 87 ~~~~~~~~~l~~-~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~vdl~~~~~~~~~~~vi~ 160 (414)
T 2uuq_A 87 MIGLHDTPPMVM-QDPPVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRAN----GGGDIVTELFKPLPSMVVA 160 (414)
T ss_dssp HHTCSSSCCGGG-CCTTHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHT----TEEEHHHHTTTHHHHHHHH
T ss_pred cccccccccccc-CCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHHhHHHHHH
Confidence 2 1 11345544 5899999999998 789999999999999999999999999752 369996 556799999999
Q ss_pred HHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccc-cccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 040285 187 NTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFF-PVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQER 265 (298)
Q Consensus 187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 265 (298)
. +||.+.+. ...+.+....++.. .++ |.. .+..+...++.+++.++|+++++.
T Consensus 161 ~-~~G~~~~~-----~~~~~~~~~~~~~~-------~~~~p~~---------~~~~~~~~~~~~~~~~~i~~r~~~---- 214 (414)
T 2uuq_A 161 H-YLGVPEED-----WTQFDGWTQAIVAA-------NAVDGAT---------TGALDAVGSMMAYFTGLIERRRTE---- 214 (414)
T ss_dssp H-HTTCCGGG-----HHHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTTS----
T ss_pred H-HhCCCHHH-----HHHHHHHHHHHHhh-------cccCCch---------hHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 9 69987642 23444444433332 022 311 123345667788888888877642
Q ss_pred CCCCCCCHHHHHhhcccc-CCCCCCHHhhhhhc
Q 040285 266 DFTESKDMLDALLKICED-KSVEIDINDIKHLF 297 (298)
Q Consensus 266 ~~~~~~d~l~~lL~~~~~-~~~~lt~~~i~~~~ 297 (298)
. .+|+++.|+++.++ ++..+|+++|.+.+
T Consensus 215 ~---~~dll~~ll~~~~~~~~~~ls~~ei~~~~ 244 (414)
T 2uuq_A 215 P---ADDAISHLVAAGVGADGDTAGTLSILAFT 244 (414)
T ss_dssp C---CSSHHHHHHHTTTTCTTCHHHHHHHHHHH
T ss_pred C---CCCHHHHHHhcccccCCCCCCHHHHHHHH
Confidence 1 26999999987542 23358998887654
No 57
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.79 E-value=8.8e-19 Score=159.57 Aligned_cols=214 Identities=16% Similarity=0.220 Sum_probs=150.6
Q ss_pred CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccc--------cCCCCcccCCC
Q 040285 51 GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHG--------HHEFGMPWLPV 122 (298)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~--------~~~~~~~~~~~ 122 (298)
.++|+..+.+| ++||||+++++| ++++++++.++++|.+ ...+++|+......... ....++ +..+
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~d 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRH-PSSCSDRTKSTIFQRQLAAETQPRPQGPASF-LFLD 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHC-TTEECCGGGCHHHHHHHC---------CCCG-GGCC
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcC-cccccCcccccccccccccccccccccccch-hhcC
Confidence 47899999888 689999999887 9999999999999976 44567776433221110 112343 4467
Q ss_pred ChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHH-HHHHHHHHHHHHHHhccCCCCCCchh
Q 040285 123 ATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ-AAFDTTLNLISNTIFSIDLADPTSKT 201 (298)
Q Consensus 123 g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~ 201 (298)
|+.|+++||++ +++|+++.++.+.+.+.++++.+++ +.+ ++++|+.. ....+++++|+. +||.+.+.
T Consensus 102 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~-l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----- 169 (418)
T 3r9b_A 102 PPDHTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLD-AVD----GPEFNLIDNLAYPLPVAVICR-LLGVPIED----- 169 (418)
T ss_dssp TTHHHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHH-TCC----SSEEEHHHHTTTHHHHHHHHH-HHTCCGGG-----
T ss_pred CchHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHh-hhc----cCCeehHHHHhCcCCHHHHHH-HcCCCHHH-----
Confidence 99999999999 6899999999999999999999999 742 34899754 456899999999 89986642
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhcc
Q 040285 202 AREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKIC 281 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~ 281 (298)
...+......+..... .++.+.+++. ...++..+..+.+.+++.++|+++++. ..+|+++.|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~d~l~~ll~~~ 235 (418)
T 3r9b_A 170 EPKFSRASALLAAALD------PFLALTGETS-DLFDEQMKAGMWLRDYLRALIDERRRT-------PGEDLMSGLVAVE 235 (418)
T ss_dssp HHHHHHHHHHHHHTTS------CHHHHHSSCC-TTHHHHHHHHHHHHHHHHHHHHHTTTS-------CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC------ccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCccHHHHHHHhh
Confidence 2344444444333221 1111112221 224566777888899999988877642 1369999999864
Q ss_pred ccCCCCCCHHhhhhhc
Q 040285 282 EDKSVEIDINDIKHLF 297 (298)
Q Consensus 282 ~~~~~~lt~~~i~~~~ 297 (298)
+ ++..+|++++.+.+
T Consensus 236 ~-~~~~ls~~ei~~~~ 250 (418)
T 3r9b_A 236 E-SGDQLTEDEIIATC 250 (418)
T ss_dssp H-HSSSCCHHHHHHHH
T ss_pred h-ccCCCCHHHHHHHH
Confidence 3 23459999988754
No 58
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.78 E-value=2.9e-18 Score=156.66 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=148.3
Q ss_pred CCchHHHHHHHHHhCCceEEecC--CeeEEEecCHHHHHHHHHhCCccccccCcc--------c-ccc---c-c-ccCCC
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFG--QVTTVVFSSAAMAKEILQNQDTSFCNRTIP--------D-AIY---A-H-GHHEF 115 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~--------~-~~~---~-~-~~~~~ 115 (298)
.+|+..+.++. +||||+++++| +.++++++||++++++|.++ .|++||.. . ... . + ..++.
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 56888999986 59999999998 78999999999999999875 79988642 1 110 0 1 01123
Q ss_pred CcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHH-HHHHHHHHHHHHHhccCC
Q 040285 116 GMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQA-AFDTTLNLISNTIFSIDL 194 (298)
Q Consensus 116 ~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~-~~~~t~~ii~~~~fG~~~ 194 (298)
++++ .+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ .| ++|+... ...+++++|+.+ ||.+.
T Consensus 97 ~l~~-~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g-~~dl~~~~~~~~~~~vi~~~-~G~~~ 169 (425)
T 2z3t_A 97 WLVF-LDPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRA---QR-RPDLVEGFAAPLPILVISAL-LGIPE 169 (425)
T ss_dssp CGGG-CCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTT---SS-SCBHHHHTTTHHHHHHHHHH-HTCCG
T ss_pred cccc-CCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cC-CccHHHHHHHHHHHHHHHHH-hCCCH
Confidence 5544 5799999999998 78999999999999999999999999864 23 7999775 478999999998 99865
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHH
Q 040285 195 ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDML 274 (298)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 274 (298)
+. ...+......+.... +.+| ++ ....++..+..+++.+++.++|+++++. ..+|++
T Consensus 170 ~~-----~~~~~~~~~~~~~~~------~~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll 226 (425)
T 2z3t_A 170 ED-----HTWLRANAVALQEAS------TTRA----RD-GRGYARAEAASQEFTRYFRREVDRRGGD-------DRDDLL 226 (425)
T ss_dssp GG-----HHHHHHHHHHHHTTC------TTCC----C----HHHHHHHHHHHHHHHHHHHHCC--------------CHH
T ss_pred HH-----HHHHHHHHHHHHhhc------cccC----CC-HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHH
Confidence 41 234444433332211 1222 11 1123456667778888888888877642 126999
Q ss_pred HHHhhccccCCCCCCHHhhhhhc
Q 040285 275 DALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 275 ~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
+.|+++.++ +..+|+++|.+.+
T Consensus 227 ~~ll~~~~~-~~~ls~~el~~~~ 248 (425)
T 2z3t_A 227 TLLVRARDT-GSPLSVDGIVGTC 248 (425)
T ss_dssp HHHHHHHHT-TCCCCHHHHHHHH
T ss_pred HHHHHhhcc-CCCCCHHHHHHHH
Confidence 999987543 3469999987754
No 59
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.78 E-value=2.6e-18 Score=156.24 Aligned_cols=205 Identities=13% Similarity=0.133 Sum_probs=148.1
Q ss_pred CCCchHHHHHHHHHhCCceEEecCC--eeEEEecCHHHHHHHHHhCCccccccCcccc----ccccccC--CCCcccCCC
Q 040285 51 GDKPHKSLAKLAKIHGPIMSLKFGQ--VTTVVFSSAAMAKEILQNQDTSFCNRTIPDA----IYAHGHH--EFGMPWLPV 122 (298)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~--~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~----~~~~~~~--~~~~~~~~~ 122 (298)
+++||..+.++. +||||+++++++ .+++++++|+.+++||.+ ..|++++.... ...+ .+ +.++ +..+
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~-~~~~~~~l-~~~d 100 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPH-FKPRPGSL-AFAD 100 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSC-CCCCTTCS-TTCC
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccc-hhcccccc-ccCC
Confidence 366889998887 899999999865 889999999999999976 36887754321 1111 11 2344 4568
Q ss_pred ChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHH-HHHHHHHHHHHhccCCCCCCchh
Q 040285 123 ATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAF-DTTLNLISNTIFSIDLADPTSKT 201 (298)
Q Consensus 123 g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~ 201 (298)
|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+. |+++|+...+. .+++++|+. +||.+.+.
T Consensus 101 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~----- 170 (411)
T 2dkk_A 101 QPDHNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAE---GPPADLVERVLEPFPIAVVSE-VMGVPAAD----- 170 (411)
T ss_dssp TTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEHHHHTTTHHHHHHHHH-HHTCCSSH-----
T ss_pred chHHHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCeehHHHHHHHHHHHHHHH-HhCCCHHH-----
Confidence 99999999998 789999999999999999999999999763 56899987775 699999998 59986531
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhcc
Q 040285 202 AREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKIC 281 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~ 281 (298)
...+.. ....+.. ..+ . .++..+...++.+++.++|+++++. ..+|+++.|+++
T Consensus 171 ~~~~~~----~~~~~~~-----~~~--------~-~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~dll~~ll~~- 224 (411)
T 2dkk_A 171 RERVHS----WTRQIIS-----TSG--------G-AEAAERAKRGLYGWITETVRARAGS-------EGGDVYSMLGAA- 224 (411)
T ss_dssp HHHHHH----HHGGGCS-----SCS--------C-SHHHHHHHHHHHHHHHHHHHTTTTC-------CSSCHHHHHHHH-
T ss_pred HHHHHH----HHHHHHh-----ccc--------h-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHh-
Confidence 223322 2211111 111 1 1345667778888888888776532 126999999987
Q ss_pred ccCCCCCCHHhhhhhc
Q 040285 282 EDKSVEIDINDIKHLF 297 (298)
Q Consensus 282 ~~~~~~lt~~~i~~~~ 297 (298)
+ ++..+|+++|.+.+
T Consensus 225 ~-~~~~ls~~el~~~~ 239 (411)
T 2dkk_A 225 V-GRGEVGETEAVGLA 239 (411)
T ss_dssp H-HTTSSCTTSHHHHH
T ss_pred c-CCCCCCHHHHHHHH
Confidence 3 34468998887654
No 60
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.78 E-value=3.7e-18 Score=155.65 Aligned_cols=230 Identities=11% Similarity=0.096 Sum_probs=158.6
Q ss_pred CCCCCCCCCce--ecccCCC-----CCCchHHHHHHHHHhC-CceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcc
Q 040285 33 RLPPGPTPYPV--IGNLLEL-----GDKPHKSLAKLAKIHG-PIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIP 104 (298)
Q Consensus 33 ~~pPgP~~~Pi--lGnl~~l-----~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~ 104 (298)
..+|.|+..|- ++.+..+ ..+|+..+.++.+++| ||+++..|+ ++++++||+.++++| ++...|++|+..
T Consensus 12 ~~~~~p~~~p~~~~~~~~~~~~~~~~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~ 89 (421)
T 3lxh_A 12 HRVAPPPHVPGHLIREIDAYDLDGLEQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIW 89 (421)
T ss_dssp CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCS
T ss_pred cCCCCCCCCChhhccCCCCCCchhhhcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCccc
Confidence 34566666662 2332222 2578899988876655 899999876 589999999999999 556789988732
Q ss_pred ccccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHH
Q 040285 105 DAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLN 183 (298)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ 183 (298)
.........+.+ ++..+|+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+...+ ..++.+
T Consensus 90 ~~~~~~~~~~~~-~~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~ 163 (421)
T 3lxh_A 90 VPREAGEAYDMV-PTKLDPPEHTPYRKAI-DKGLNLAEIRKLEDQIRTIAVEIIEGFAD----RGHCEFGSEFSTVFPVR 163 (421)
T ss_dssp SSHHHHHHCCCT-TTTCCTTTHHHHHHHH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTTHHHH
T ss_pred CCcccccccccC-CccCCcHHHHHHHHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHHHHH
Confidence 221111111223 4557899999999998 78999999999999999999999998853 3478875554 567888
Q ss_pred HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040285 184 LISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQ 263 (298)
Q Consensus 184 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 263 (298)
+++. +||.+.+ +...+.+....++... .++|. ...++..+..+++.+++.++|+++++.
T Consensus 164 v~~~-~~G~~~~-----~~~~~~~~~~~~~~~~------------~~~p~-~~~~~~~~~~~~~~~~~~~~i~~r~~~-- 222 (421)
T 3lxh_A 164 VFLA-LAGLPVE-----DATKLGLLANEMTRPS------------GNTPE-EQGRSLEAANKGFFEYVAPIIAARRGG-- 222 (421)
T ss_dssp HHHH-HHTCCGG-----GHHHHHHHHHHHHSCC------------CSSHH-HHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHH-HcCCCHH-----HHHHHHHHHHHHhccc------------cCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 8876 5886542 2345555444433211 12221 123566777888999999999887653
Q ss_pred cCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 264 ERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 264 ~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
. .+|+++.|+++.+ ++..+|++++.+.+
T Consensus 223 --~---~~dll~~ll~~~~-~~~~l~~~ei~~~~ 250 (421)
T 3lxh_A 223 --S---GTDLITRILNVEI-DGKPMPDDRALGLV 250 (421)
T ss_dssp --C---CCSHHHHHHTSCB-TTBCCCHHHHHHHH
T ss_pred --C---CCCHHHHHHhhhc-cCCCCCHHHHHHHH
Confidence 1 3699999998754 34469999988754
No 61
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.77 E-value=1.9e-17 Score=150.19 Aligned_cols=202 Identities=13% Similarity=0.117 Sum_probs=147.5
Q ss_pred CCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCcccc-ccccccCCCCc-ccCCCC---
Q 040285 50 LGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDA-IYAHGHHEFGM-PWLPVA--- 123 (298)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~-~~~~~~~~~~~-~~~~~g--- 123 (298)
+..+|+..+.+| ++||||+++++ |+.++|+++||++++++|.++ .|++++.... ......+ .+. ++..+|
T Consensus 24 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~-~~~~l~~~~g~~~ 99 (404)
T 2xbk_A 24 KMLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVRS-PFLDLLISDADAE 99 (404)
T ss_dssp BTTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSCC-HHHHTTCBCSCHH
T ss_pred cccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccccc-ccccceeeCCCCC
Confidence 346789999999 89999999997 899999999999999999874 4887764321 2221121 231 344679
Q ss_pred ---hhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCc
Q 040285 124 ---TLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTS 199 (298)
Q Consensus 124 ---~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~ 199 (298)
+.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ .|+++|+...+ ..+++++|+. +||.+.+
T Consensus 100 ~~~~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~---- 170 (404)
T 2xbk_A 100 SGRRQHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIA---QGPPGDLHGELTVPFALTVLCE-VIGVPPQ---- 170 (404)
T ss_dssp HHHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSEEHHHHTHHHHHHHHHHH-HHTCCGG----
T ss_pred CCCchHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHH-HhCCCHH----
Confidence 9999999998 78999999999999999999999999974 36689998665 5699999997 7998653
Q ss_pred hhHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhh
Q 040285 200 KTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLK 279 (298)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~ 279 (298)
+...+......++.. ..| + +..+...++.+++.++|+++++. . .+|+++.| +
T Consensus 171 -~~~~~~~~~~~~~~~--------~~~--------p---~~~~~~~~~~~~~~~~i~~r~~~----~---~~dll~~l-~ 222 (404)
T 2xbk_A 171 -RRAELTTLLAGIAKL--------DDR--------E---GAVRAQDDLFGYVAGLVEHKRAE----P---GPDIISRL-N 222 (404)
T ss_dssp -GHHHHHHHHHHHTBS--------SCH--------H---HHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHH-H
T ss_pred -HHHHHHHHHHHHHhc--------cCc--------H---HHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHh-h
Confidence 123444333322110 001 1 44556777888899999888753 1 25999998 2
Q ss_pred ccccCCCCCCHHhhhhhc
Q 040285 280 ICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 280 ~~~~~~~~lt~~~i~~~~ 297 (298)
++ .+|++++.+.+
T Consensus 223 ----~~-~ls~~ei~~~~ 235 (404)
T 2xbk_A 223 ----DG-ELTEDRVAHLA 235 (404)
T ss_dssp ----SS-SCCHHHHHHHH
T ss_pred ----cC-CCCHHHHHHHH
Confidence 23 69999987654
No 62
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.77 E-value=3.9e-18 Score=157.35 Aligned_cols=164 Identities=8% Similarity=0.083 Sum_probs=119.4
Q ss_pred CCCCCCCCCCCCceecccCCC-----CC-CchHHHHHHHHHhCC-ceEEecCCee-------EEEecCHHHHHHHHH---
Q 040285 30 GSRRLPPGPTPYPVIGNLLEL-----GD-KPHKSLAKLAKIHGP-IMSLKFGQVT-------TVVFSSAAMAKEILQ--- 92 (298)
Q Consensus 30 ~~~~~pPgP~~~PilGnl~~l-----~~-~~~~~~~~~~~~yG~-i~~~~~g~~~-------~vvv~~~~~~~evL~--- 92 (298)
.+.+.+|||+|||++||++++ .. +++..+.++.++||+ ||++++|+.+ .|++++.+..+.++.
T Consensus 6 ~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~ 85 (473)
T 3dan_A 6 KPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSK 85 (473)
T ss_dssp SCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTT
T ss_pred CCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcc
Confidence 445678999999999999875 35 789999999999999 9999997443 344455443333332
Q ss_pred -hCCccccccCccccccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcce
Q 040285 93 -NQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAI 171 (298)
Q Consensus 93 -~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v 171 (298)
++...+.++.. .....++.......+..+|+.|+++||++ ++.|++ .++.+.+.+.++++.+++.|.+...+++++
T Consensus 86 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~h~~~R~~~-~~~f~~-~~~~~~~~i~~~~~~ll~~~~~~~~~~~~v 162 (473)
T 3dan_A 86 VEKKDLFTGTYM-PSTKLTGGYRVLSYLDPSEPRHAQLKNLL-FFMLKN-SSNRVIPQFETTYTELFEGLEAELAKNGKA 162 (473)
T ss_dssp EECSSCTTSSSC-CCGGGGTTSCCGGGCCTTSHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred eecccccccccc-CCccccCCCcceeeeCCCcHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 12223333221 11122211111223446899999999998 688998 489999999999999999998654345689
Q ss_pred ehHHHHHHHHHHHHHHHHhccCCCC
Q 040285 172 HIGQAAFDTTLNLISNTIFSIDLAD 196 (298)
Q Consensus 172 d~~~~~~~~t~~ii~~~~fG~~~~~ 196 (298)
|+.+.+..+++++++.++||.+.+.
T Consensus 163 dl~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 163 AFNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999998765
No 63
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.76 E-value=1.2e-17 Score=151.07 Aligned_cols=207 Identities=16% Similarity=0.155 Sum_probs=147.6
Q ss_pred CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccc------cccccC-CCCcccCCCCh
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAI------YAHGHH-EFGMPWLPVAT 124 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~------~~~~~~-~~~~~~~~~g~ 124 (298)
.+|+..+.++ ++||||++ + | .++++++||++++++|.+ ..|++++..... ..+..- +.++ +..+|+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDII-LFQDEP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCG-GGCCTT
T ss_pred cCchHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC--CCcccCccccccccccccccccccccccc-ccCCch
Confidence 4678888766 69999999 7 5 789999999999999976 468876532110 111100 2344 446899
Q ss_pred hHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHH-HHHHHHHHHHHHHHhccCCCCCCchhHH
Q 040285 125 LWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ-AAFDTTLNLISNTIFSIDLADPTSKTAR 203 (298)
Q Consensus 125 ~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~~~ 203 (298)
.|+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+.. ....+++++|+.+ ||.+.+. ..
T Consensus 86 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~~vi~~~-~G~~~~~-----~~ 154 (397)
T 3buj_A 86 DHGRLRGVV-GPAFSPSALRRLEPVIAGTVDDLLRPALA----RGAMDVVDELAYPLALRAVLGL-LGLPAAD-----WG 154 (397)
T ss_dssp HHHHHHHHH-GGGSSTTTTGGGHHHHHHHHHHHHHHHHT----TTEEEHHHHTHHHHHHHHHHHH-HTCCGGG-----HH
T ss_pred hHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHhHHHHHHHH-hCCCHHH-----HH
Confidence 999999998 78999999999999999999999999863 34899865 4578999999998 9986642 23
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhcccc
Q 040285 204 EFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICED 283 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~ 283 (298)
.+......+..... . .++ +...++..+..+++.+++.++|+++++. . .+|+++.|+++.++
T Consensus 155 ~~~~~~~~~~~~~~---------~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~dll~~ll~~~~~ 215 (397)
T 3buj_A 155 AVGRWSRDVGRTLD---------R--GAS-AEDMRRGHAAIAEFADYVERALARRRRE----G---GEDLLALMLDAHDR 215 (397)
T ss_dssp HHHHHHHHHHGGGC---------S--SCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----C---CCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcC---------C--CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcC----C---CCCHHHHHHHhhhc
Confidence 44444444333211 0 011 1223456677788899999999988763 1 26999999987532
Q ss_pred CCCCCCHHhhhhhc
Q 040285 284 KSVEIDINDIKHLF 297 (298)
Q Consensus 284 ~~~~lt~~~i~~~~ 297 (298)
+. +|+++|.+.+
T Consensus 216 -~~-ls~~ei~~~~ 227 (397)
T 3buj_A 216 -GL-MSRNEIVSTV 227 (397)
T ss_dssp -TS-SCHHHHHHHH
T ss_pred -CC-CCHHHHHHHH
Confidence 33 9999988754
No 64
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.75 E-value=1.1e-17 Score=151.32 Aligned_cols=198 Identities=12% Similarity=0.160 Sum_probs=139.1
Q ss_pred HHHHHHHhCCceEEecC-Ce---eEEEecCHHHHHHHHHhCCccccccCc------ccc---ccccccCCCCcccCCCCh
Q 040285 58 LAKLAKIHGPIMSLKFG-QV---TTVVFSSAAMAKEILQNQDTSFCNRTI------PDA---IYAHGHHEFGMPWLPVAT 124 (298)
Q Consensus 58 ~~~~~~~yG~i~~~~~g-~~---~~vvv~~~~~~~evL~~~~~~f~~Rp~------~~~---~~~~~~~~~~~~~~~~g~ 124 (298)
+.+|+++ |||++++++ +. ++|+++||++++++|+++ ..|++||. ... .... ..+.+++ ..+|+
T Consensus 19 ~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~l~-~~~g~ 94 (398)
T 1lfk_A 19 ADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPR-ELVGNLM-DYDPP 94 (398)
T ss_dssp CHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC--------------CCTTCGG-GCCTT
T ss_pred hHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCccccccc-ccccCcc-ccCCH
Confidence 4457666 999999875 45 899999999999999543 35888875 111 1111 1123444 46799
Q ss_pred hHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHH-HHHHHHHHHHhccCCCCCCchhHH
Q 040285 125 LWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFD-TTLNLISNTIFSIDLADPTSKTAR 203 (298)
Q Consensus 125 ~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~-~t~~ii~~~~fG~~~~~~~~~~~~ 203 (298)
.|+++||++ ++.|+++.++.+.+.+.++++.+++.|.+ .|+++|+.+.+.. ++.++++. +||.+.+ +..
T Consensus 95 ~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-----~~~ 164 (398)
T 1lfk_A 95 EHTRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMER---AGSPADLIAFVADKVPGAVLCE-LVGVPRD-----DRD 164 (398)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG-----GHH
T ss_pred HHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHH-----HHH
Confidence 999999998 78899999999999999999999999974 2668999998887 88999997 5998653 123
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhcccc
Q 040285 204 EFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICED 283 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~ 283 (298)
.+......++ . . + +..++..+..+++.+++.++|+++++. . .+|+++.|+++.
T Consensus 165 ~~~~~~~~~~----~-----~-~--------~~~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~dll~~ll~~~-- 217 (398)
T 1lfk_A 165 MFMKLCHGHL----D-----A-S--------LSQKRRAALGDKFSRYLLAMIARERKE----P---GEGMIGAVVAEY-- 217 (398)
T ss_dssp HHHHHHHHTT----C-----T-T--------SCHHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHHH--
T ss_pred HHHHHHHHHH----h-----c-c--------cchHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHHHhc--
Confidence 3433332211 0 0 0 112456667788889999999888753 1 269999999864
Q ss_pred CCCCCCHHhhhhhc
Q 040285 284 KSVEIDINDIKHLF 297 (298)
Q Consensus 284 ~~~~lt~~~i~~~~ 297 (298)
++.+|+++|.+.+
T Consensus 218 -~~~l~~~el~~~~ 230 (398)
T 1lfk_A 218 -GDDATDEELRGFC 230 (398)
T ss_dssp -GGGSCHHHHHHHH
T ss_pred -CCCCCHHHHHHHH
Confidence 2358999987654
No 65
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.75 E-value=1.4e-17 Score=150.50 Aligned_cols=205 Identities=9% Similarity=0.056 Sum_probs=147.0
Q ss_pred CCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhHHHHH
Q 040285 51 GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLR 130 (298)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 130 (298)
..+|+..+.+|+++ |||+++..|+ +.++++||++++++|.+ ...|++|+...........+ ..++..+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~-~~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTPGLGKVMQ-FIPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSSTTHHHHHC-CTTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCCccccccc-cCccccCCcHHHHHH
Confidence 46899999999988 9999999884 58999999999999965 46899987322111111111 234567899999999
Q ss_pred HHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCchhHHHHHHHH
Q 040285 131 KICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSKTAREFKQTN 209 (298)
Q Consensus 131 r~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~ 209 (298)
|++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+...+ ..++.++++. +||.+.+ +...+....
T Consensus 99 ~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~-~~G~~~~-----~~~~~~~~~ 167 (396)
T 3oft_A 99 TPV-MKGLASRFVVALEPKVQAVARKLMESLRP----RGSCDFVSDFAEILPLNIFLT-LIDVPLE-----DRPRLRQLG 167 (396)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHGG----GSEEEHHHHTTTTHHHHHHHH-HTTCCGG-----GHHHHHHHH
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH-----HHHHHHHHH
Confidence 998 78999999999999999999999999864 2368876555 5567777766 6886432 234444443
Q ss_pred HHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCC
Q 040285 210 WGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEID 289 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt 289 (298)
..++.. .. .++..+..+++.+++.++|+++++. . .+|+++.|+++.+ ++..+|
T Consensus 168 ~~~~~~------------~~-------~~~~~~~~~~~~~~~~~~i~~r~~~----~---~~d~l~~ll~~~~-~~~~l~ 220 (396)
T 3oft_A 168 VQLTRP------------DG-------SMTVEQLKQAADDYLWPFIEKRMAQ----P---GDDLFSRILSEPV-GGRPWT 220 (396)
T ss_dssp HHHHSC------------CS-------SCCHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHTSCB-TTBCCC
T ss_pred HHHhCC------------CC-------HHHHHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHHHhhc-cCCCCC
Confidence 333210 00 0134556778888999999888764 1 2699999998754 344599
Q ss_pred HHhhhhhc
Q 040285 290 INDIKHLF 297 (298)
Q Consensus 290 ~~~i~~~~ 297 (298)
++++.+.+
T Consensus 221 ~~el~~~~ 228 (396)
T 3oft_A 221 VDEARRMC 228 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 66
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.75 E-value=4.8e-18 Score=155.92 Aligned_cols=210 Identities=14% Similarity=0.128 Sum_probs=139.6
Q ss_pred CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhHHHHHH
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRK 131 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 131 (298)
.+|+..+.++ ++||||+++..++ ++++++|+.+++||.++.. |++++........ .+ .+.++..+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~-~~-~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEPV-MR-GPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCCS-CC--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-ccccccccccccc-cC-CCccccCCcHHHHHHHH
Confidence 4677777666 7899999988766 8999999999999987654 9888754443333 22 12245578999999999
Q ss_pred HHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceeh-HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHH
Q 040285 132 ICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHI-GQAAFDTTLNLISNTIFSIDLADPTSKTAREFKQTNW 210 (298)
Q Consensus 132 ~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~-~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~ 210 (298)
++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+ .++...+++++|+. +||.+.+ +...+.....
T Consensus 127 ~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~-----~~~~~~~~~~ 195 (441)
T 3nc3_A 127 IV-VRSFIGDALDHLSPLIKQNAENLLAPYLE----RGKSDLVNDFGKTFAVCVTMD-MLGLDKR-----DHEKISEWHS 195 (441)
T ss_dssp HH-HHHHHHTHHHHHHHHHHHHHHHHHTTTTT----TTEEECCCCCHHHHHHHHHHH-HTTCCGG-----GHHHHHHHHH
T ss_pred HH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHH-HcCCCHH-----HHHHHHHHHH
Confidence 98 78999999999999999999999988753 457886 55566799999998 5897553 2345555555
Q ss_pred HHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCH
Q 040285 211 GMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDI 290 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~ 290 (298)
.++....... .+ ....++..+..+++.+++.++|+++++. ..+|+++.|+++.+ ++..+|+
T Consensus 196 ~~~~~~~~~~----~~-------~~~~~~~~~~~~~l~~~~~~~i~~rr~~-------~~~Dll~~Ll~~~~-~~~~ls~ 256 (441)
T 3nc3_A 196 GVADFITSIS----QS-------PEARAHSLWCSEQLSQYLMPVIKERRVN-------PGSDLISILCTSEY-EGMALSD 256 (441)
T ss_dssp HHHHHHHCSC----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CCSSHHHHHCC-------CCCH
T ss_pred HHHHhccccc----CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhc-cCCCCCH
Confidence 5554332100 00 1113455667778888999999887641 23699999998654 2346999
Q ss_pred Hhhhhhc
Q 040285 291 NDIKHLF 297 (298)
Q Consensus 291 ~~i~~~~ 297 (298)
++|.+.+
T Consensus 257 ~el~~~~ 263 (441)
T 3nc3_A 257 KDILALI 263 (441)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 67
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.73 E-value=6.1e-17 Score=147.43 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=146.2
Q ss_pred CCchHHHHHHHHHhCCceEEe-cCC-eeEEEecCHHHHHHHHHhCCccccccCccccccccc--cCC-CCcccCCCChhH
Q 040285 52 DKPHKSLAKLAKIHGPIMSLK-FGQ-VTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHG--HHE-FGMPWLPVATLW 126 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~-~g~-~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~--~~~-~~~~~~~~g~~W 126 (298)
.+|+..+.++.+ ||||+++. .|. .+++++++++.++++|. +...|++|+......... ... .+.++..+|+.|
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 114 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLA-PSAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQH 114 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSC-TTSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHh-ChhhhcCCccccccccccccccccCCCccccCcHHH
Confidence 478999988876 99999997 564 79999999999999994 456799887533322110 000 122455789999
Q ss_pred HHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCchhHHHH
Q 040285 127 RNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSKTAREF 205 (298)
Q Consensus 127 k~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~ 205 (298)
+++||++ +++|+++.++.+.+.+.++++.+++.|.+ ++++|+...+ ..+++++|+. +||.+.+ +...+
T Consensus 115 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~-----~~~~~ 183 (415)
T 3mgx_A 115 RKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLD----GEVCDAATAIGPRIPAAVVCE-ILGVPAE-----DEDML 183 (415)
T ss_dssp HHHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSS----SSCEESTTTTTTHHHHHHHHH-HHTCCGG-----GHHHH
T ss_pred HHHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHH-HcCCCHH-----HHHHH
Confidence 9999998 78999999999999999999999988753 3379998777 6799999998 5886432 23455
Q ss_pred HHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCC
Q 040285 206 KQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKS 285 (298)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~ 285 (298)
.+....++... ...+.| . . ..+...++.+++.++|+++++. . .+|+++.|+++.
T Consensus 184 ~~~~~~~~~~~----~~~~~~------~-~----~~~~~~~l~~~~~~~i~~rr~~----~---~~dll~~ll~~~---- 237 (415)
T 3mgx_A 184 IDLTNHAFGGE----DELFDG------M-T----PRQAHTEILVYFDELITARRKE----P---GDDLVSTLVTDD---- 237 (415)
T ss_dssp HHHHHHHTSCC----C----C------C-C----HHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHCT----
T ss_pred HHHHHHHHccc----Ccccch------H-H----HHHHHHHHHHHHHHHHHHHHhC----C---CCCHHHHHHhCC----
Confidence 54444432211 111111 1 1 1245677888899999888753 1 269999999754
Q ss_pred CCCCHHhhhhhc
Q 040285 286 VEIDINDIKHLF 297 (298)
Q Consensus 286 ~~lt~~~i~~~~ 297 (298)
.+|++++.+.+
T Consensus 238 -~ls~~el~~~~ 248 (415)
T 3mgx_A 238 -DLTIDDVLLNC 248 (415)
T ss_dssp -TSCHHHHHHHH
T ss_pred -CCCHHHHHHHH
Confidence 48999887754
No 68
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.72 E-value=2.3e-17 Score=149.28 Aligned_cols=204 Identities=11% Similarity=0.136 Sum_probs=142.3
Q ss_pred CCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCcccc-c-cCcc--cccc--cccc-CCCCcccCC
Q 040285 50 LGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFC-N-RTIP--DAIY--AHGH-HEFGMPWLP 121 (298)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~-~-Rp~~--~~~~--~~~~-~~~~~~~~~ 121 (298)
+..+|+..+.+| ++||||+++++ |+.++|+++|+++++++|.++ .|+ + ++.. .... .+.. .+.++++.
T Consensus 14 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 89 (396)
T 1n40_A 14 RGDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI- 89 (396)
T ss_dssp CSSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH-
T ss_pred cccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH-
Confidence 446789999999 99999999998 899999999999999999875 477 6 6532 1111 1110 11233332
Q ss_pred CChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCch
Q 040285 122 VATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSK 200 (298)
Q Consensus 122 ~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~ 200 (298)
.|+++||++ ++.|+++ ++.+.+.+.++++.+++.|.+. ++++|+...+ ..+++++|+. +||.+.+
T Consensus 90 ---~h~~~R~~~-~~~fs~~-~~~~~~~i~~~~~~l~~~l~~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----- 155 (396)
T 1n40_A 90 ---ADAGLRKAV-MKAITPK-APGLEQFLRDTANSLLDNLITE---GAPADLRNDFADPLATALHCK-VLGIPQE----- 155 (396)
T ss_dssp ---HHTTCHHHH-HHHTSSC-STTHHHHHHHHHHHHHHHHHHH---CSCEETTTTTHHHHHHHHHHH-HHTCCGG-----
T ss_pred ---HHHHHHHHH-HHhhChH-HHHhHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHhHHHHHHH-HhCCChh-----
Confidence 999999998 6889999 9999999999999999999752 5689998655 5899999998 8998653
Q ss_pred hHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhc
Q 040285 201 TAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKI 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~ 280 (298)
+..++.+....++... ...| .++..+..+++ +++.++|+ +++ .++|+++.|+++
T Consensus 156 ~~~~~~~~~~~~~~~~------------~~~p----~~~~~~~~~~~-~~~~~~i~------~~~---~~~dll~~ll~~ 209 (396)
T 1n40_A 156 DGPKLFRSLSIAFMSS------------ADPI----PAAKINWDRDI-EYMAGILE------NPN---ITTGLMGELSRL 209 (396)
T ss_dssp GHHHHHHTHHHHTBCC------------SSCC----HHHHHHHHHHH-HHHHHHHH------CTT---CCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccc------------cCCC----HHHHHHHHHHH-HHHHHHHh------CCC---CCCCHHHHHHHh
Confidence 1234444433322110 0011 13455556666 77777765 112 236999999986
Q ss_pred c-ccCCCCCCHHhhhhhc
Q 040285 281 C-EDKSVEIDINDIKHLF 297 (298)
Q Consensus 281 ~-~~~~~~lt~~~i~~~~ 297 (298)
. ++++..+|+++|.+.+
T Consensus 210 ~~~~~~~~l~~~~i~~~~ 227 (396)
T 1n40_A 210 RKDPAYSHVSDELFATIG 227 (396)
T ss_dssp HTSGGGTTSCHHHHHHHH
T ss_pred hcccccCCCCHHHHHHHH
Confidence 5 2133469999987754
No 69
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.68 E-value=5.5e-17 Score=147.74 Aligned_cols=210 Identities=13% Similarity=0.149 Sum_probs=143.8
Q ss_pred CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccccc----ccccCCCCcccCCCChhHH
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIY----AHGHHEFGMPWLPVATLWR 127 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~----~~~~~~~~~~~~~~g~~Wk 127 (298)
.+|+.. ++.++|||++++++|+.. +++++++.+++||.++...++.++...... .......+.++..+|+.|+
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~ 109 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADHR 109 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHHH
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccCCchHHH
Confidence 567666 677789999999998777 999999999999987653333221111000 1100001224567899999
Q ss_pred HHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehH-HHHHHHHHHHHHHHHhccCCCCCCchhHHHHH
Q 040285 128 NLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIG-QAAFDTTLNLISNTIFSIDLADPTSKTAREFK 206 (298)
Q Consensus 128 ~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~-~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 206 (298)
++||++ +++|+++.++.+.+.+.++++.+++.| + +| ++|+. +....+++++||. +||.+.+ +...+.
T Consensus 110 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l-~---~g-~~d~~~~~~~~~~~~vi~~-l~G~~~~-----~~~~~~ 177 (416)
T 3p3o_A 110 RLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL-P---QG-DFDFVQHFPHPLPALVMCQ-LLGFPLE-----DYDTVG 177 (416)
T ss_dssp HHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC-C---SS-SEEHHHHTTTHHHHHHHHH-HHTCCGG-----GHHHHH
T ss_pred HHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh-c---cC-CccHHHHHHHHHHHHHHHH-HhCCCHH-----HHHHHH
Confidence 999998 789999999999999999999999988 3 23 58964 4456799999998 5897542 223333
Q ss_pred HHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCC
Q 040285 207 QTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSV 286 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~ 286 (298)
.....++. .+.. .......++..+...++.+++.++|+++++. . .+|+++.|+++.++ +
T Consensus 178 ~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~----~---~~dll~~ll~~~~~-~- 236 (416)
T 3p3o_A 178 RLSIETNL---------GLAL---SNDQDILVKVEQGLGRMFDYLVAAIEKRKVE----P---GDDLTSDIVRAFHD-G- 236 (416)
T ss_dssp HHHHTTCG---------GGTT---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHHHHT-T-
T ss_pred HHHHHHHh---------hccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----C---CccHHHHHHHhhcc-C-
Confidence 32222111 1111 0112234566778888999999999988753 1 36999999987654 2
Q ss_pred CCCHHhhhhhc
Q 040285 287 EIDINDIKHLF 297 (298)
Q Consensus 287 ~lt~~~i~~~~ 297 (298)
.+|+++|.+.+
T Consensus 237 ~ls~~el~~~~ 247 (416)
T 3p3o_A 237 VLDDYELRTLV 247 (416)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 69999988754
No 70
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.68 E-value=3.6e-15 Score=136.13 Aligned_cols=211 Identities=11% Similarity=0.045 Sum_probs=144.4
Q ss_pred CCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccCc---ccccc-----c-cccCCCCcccCC
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRTI---PDAIY-----A-HGHHEFGMPWLP 121 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~---~~~~~-----~-~~~~~~~~~~~~ 121 (298)
.+|+..+.++.++ |||+++.+ ++.++++|++++.++++|.+. ..|++++. ..... . ......+ ++..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 114 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPN-FIAM 114 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCC-GGGC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCc-cccc
Confidence 4588889888765 99999987 567899999999999999765 56777652 11111 0 0011123 4557
Q ss_pred CChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCch
Q 040285 122 VATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSK 200 (298)
Q Consensus 122 ~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~ 200 (298)
+|+.|+++||++ ++.|+++.++.+.+.+.++++.+++.|. +++++|+...+ ..++.++++. +||.+.+.
T Consensus 115 dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~----~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~---- 184 (426)
T 3rwl_A 115 DRPRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLP----VGEEFDWVDRVSIEITTQMLAT-LFDFPFEE---- 184 (426)
T ss_dssp CTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSC----SSSCEEHHHHTHHHHHHHHHHH-HHTCCGGG----
T ss_pred CchHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhh----cCCCcchHHHHHHHHHHHHHHH-HcCCCHHH----
Confidence 899999999998 7899999999999999999999998873 35689976666 5788888886 89975432
Q ss_pred hHHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhc
Q 040285 201 TAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKI 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~ 280 (298)
...+... ...... .. .|. . ....++..+...++.+++.++|+++++. + ..+|+++.|+++
T Consensus 185 -~~~~~~~----~~~~~~--~~--~~~--~---~~~~~~~~~~~~~~~~~~~~~i~~r~~~----~--~~~dll~~ll~~ 244 (426)
T 3rwl_A 185 -RRKLTRW----SDVTTA--AP--GGG--V---VESWDQRKTELLECAAYFQVLWNERVNK----D--PGNDLISMLAHS 244 (426)
T ss_dssp -THHHHHH----HHHHTC--CT--TSS--S---CSSHHHHHHHHHHHHHHHHHHHHHHHTS----C--CCSSHHHHHHHC
T ss_pred -HHHHHHH----HHHHHh--cc--Ccc--c---cccHHHHHHHHHHHHHHHHHHHHHHhhc----C--CCCCHHHHHHhc
Confidence 2233322 222211 00 010 1 1112345566788888999998887421 1 236999999987
Q ss_pred cccCCCCCCHHhhhhhc
Q 040285 281 CEDKSVEIDINDIKHLF 297 (298)
Q Consensus 281 ~~~~~~~lt~~~i~~~~ 297 (298)
.++ +.+|+++|.+.+
T Consensus 245 ~~~--~~ls~~el~~~~ 259 (426)
T 3rwl_A 245 PAT--RNMTPEEYLGNV 259 (426)
T ss_dssp GGG--GGCCHHHHHHHH
T ss_pred ccC--CCCCHHHHHHHH
Confidence 543 348999987754
No 71
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.67 E-value=5.8e-16 Score=138.64 Aligned_cols=192 Identities=12% Similarity=0.142 Sum_probs=135.8
Q ss_pred chHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCc-cc-cc-----c-ccccC---CCCcccCCC
Q 040285 54 PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTI-PD-AI-----Y-AHGHH---EFGMPWLPV 122 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~-~~-~~-----~-~~~~~---~~~~~~~~~ 122 (298)
|+..+.++ ++||||++++ | ++++++|+.++++|.++ ..|++++. .. .. . .+ .+ ..++++ .+
T Consensus 1 p~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-~d 72 (367)
T 3b4x_A 1 MYDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVF-FDIPTRYTMLT-SD 72 (367)
T ss_dssp CHHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCC-CCCGGGSSGGG-CC
T ss_pred CCHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccch-hhccccccccc-CC
Confidence 45677777 5899999988 5 89999999999999876 47988853 21 12 2 22 12 145544 57
Q ss_pred ChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCchh
Q 040285 123 ATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSKT 201 (298)
Q Consensus 123 g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~ 201 (298)
|+.|+++||++ ++.|+++.++. +.+.++++.+++.|. | ++|+...+ ..+++++|+. +||.+ + .
T Consensus 73 g~~h~~~R~~~-~~~fs~~~l~~--~~i~~~~~~l~~~l~-----g-~~d~~~~~~~~~~~~vi~~-~~G~~-~-~---- 136 (367)
T 3b4x_A 73 PPLHDELRNLT-ADAFNPSNLPV--DFVREVTVKLLSELD-----E-EFDVIESFAIPLPILVISK-MLGIN-P-D---- 136 (367)
T ss_dssp TTHHHHHHHTT-GGGGSGGGSCH--HHHHHHHHHHHHTCC-----S-EEEHHHHTTTHHHHHHHHH-HHTCC-C-C----
T ss_pred chhHHHHHHHH-HHhcCHhhhcc--hHHHHHHHHHHHhcc-----C-CcchHHHHHHhhHHHHHHH-HcCCC-C-c----
Confidence 99999999998 78999998877 999999999988874 4 49998665 7999999999 79987 3 1
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhcc
Q 040285 202 AREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKIC 281 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~ 281 (298)
...+......++.... ..|.. .++. +..+.+.+++.++|+++++. . .+|+++.|+++
T Consensus 137 ~~~~~~~~~~~~~~~~------~~p~~--------~~~~-~~~~~~~~~~~~~i~~r~~~----~---~~dll~~ll~~- 193 (367)
T 3b4x_A 137 VKKVKDWSDLVALRLG------RADEI--------FSIG-RKYLELISFSKKELDSRKGK----E---IVDLTGKIANS- 193 (367)
T ss_dssp HHHHHHHHHHHHTTTT------STTGG--------GCCC-HHHHHHHHHHHHHHHHHTTT----C---CSSHHHHHHTS-
T ss_pred HHHHHHHHHHHHhccC------CChhh--------HHHH-HHHHHHHHHHHHHHHHHhcC----C---CCCHHHHHHhc-
Confidence 2345444444333211 12211 1112 45667788888888877642 1 26999999975
Q ss_pred ccCCCCCCHHhhhhhc
Q 040285 282 EDKSVEIDINDIKHLF 297 (298)
Q Consensus 282 ~~~~~~lt~~~i~~~~ 297 (298)
.+|++++.+.+
T Consensus 194 -----~ls~~el~~~~ 204 (367)
T 3b4x_A 194 -----NLSELEKEGYF 204 (367)
T ss_dssp -----SSCHHHHHHHH
T ss_pred -----cCCHHHHHHHH
Confidence 38888887654
No 72
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.66 E-value=1.4e-15 Score=137.36 Aligned_cols=208 Identities=16% Similarity=0.143 Sum_probs=145.4
Q ss_pred CCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhHHHHHH
Q 040285 52 DKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRK 131 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 131 (298)
.+|+..+.++. ++|||+++..| .+++++++.+++++.+. .|+.++.............+ ++..+|+.|+++||
T Consensus 20 ~dp~~~~~~lr-~~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~-l~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQ-QDHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDT-ALGSDPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHH-HHCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGS-GGGCCTTHHHHHHH
T ss_pred cCccHHHHHHH-hcCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhcccc-cccCCchHHHHHHH
Confidence 46888887775 46899988765 68999999999999653 57766422111111111123 45578999999999
Q ss_pred HHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHH
Q 040285 132 ICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDLADPTSKTAREFKQTNWG 211 (298)
Q Consensus 132 ~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 211 (298)
++ +++|+++.++.+.+.+.+.++.+++.+. +|+++|+...+..++.++++..+||.+.+. ...+.+.+.+
T Consensus 93 ~~-~~~fs~~~~~~~~~~i~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~G~~~~~-----~~~~~~~~~~ 162 (394)
T 2wiy_A 93 QT-NKWFTPKLVDGWVRTTRELVGDLLDGVE----AGQVIEARRDLAVVPTHVTMARVLQLPEDD-----ADAVMEAMFE 162 (394)
T ss_dssp HH-HTTCSHHHHHHHTHHHHHHHHHHHHTCC----TTCCEEHHHHHTHHHHHHHHHHHHTCCCCC-----HHHHHHHHHH
T ss_pred HH-HhccCHHHHHHHHHHHHHHHHHHHHHHh----ccCCeeHHHHHHhhhHHHHHHHHcCCCHhH-----HHHHHHHHHH
Confidence 98 7899999999999999999999988774 356899999999999999999999986431 3344443333
Q ss_pred HHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCHH
Q 040285 212 MMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDIN 291 (298)
Q Consensus 212 ~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~ 291 (298)
.+.... ..|. ....++..+....+.+++.++|+++++. . .+|+++.|+++.++ +.+|++
T Consensus 163 ~~~~~~------~~p~------~~~~~~~~~~~~~l~~~~~~~i~~rr~~----~---~~dll~~Ll~~~~~--~~ls~~ 221 (394)
T 2wiy_A 163 AMLMQS------AEPA------DGDVDRAAVAFGYLSARVAEMLEDKRVN----P---GDGLADSLLDAARA--GEITES 221 (394)
T ss_dssp HHGGGS------SSCC------TTHHHHHHHHHHHHHHHHHHHHHHHHHS----C---CSSHHHHHHHHHHT--TSSCHH
T ss_pred HHHhcc------CCcc------chHHHHHHHHHHHHHHHHHHHHHHhhcC----C---CCcHHHHHHHhhhc--CCCCHH
Confidence 221100 1121 1222445556677888888888887642 1 26999999986532 359999
Q ss_pred hhhhhc
Q 040285 292 DIKHLF 297 (298)
Q Consensus 292 ~i~~~~ 297 (298)
++.+.+
T Consensus 222 el~~~~ 227 (394)
T 2wiy_A 222 EAIATI 227 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 73
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.64 E-value=1.5e-15 Score=135.87 Aligned_cols=192 Identities=14% Similarity=0.185 Sum_probs=132.8
Q ss_pred chHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCc--c---ccc--cc--ccc-CCCCcccCCCC
Q 040285 54 PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTI--P---DAI--YA--HGH-HEFGMPWLPVA 123 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~--~---~~~--~~--~~~-~~~~~~~~~~g 123 (298)
|+..+.++ ++||||+++ | ++++++++++++++|.+. ..|++|+. . ... .. +.. .+.++ +..+|
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTM-LTSDP 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSG-GGCCT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-cccccccccccccccccccccccccccccccc-ccCCC
Confidence 45677777 699999987 5 689999999999999874 47999874 1 101 11 210 11344 44689
Q ss_pred hhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCchhH
Q 040285 124 TLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSKTA 202 (298)
Q Consensus 124 ~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~ 202 (298)
+.|+++||++ +++|+++.++.+.+.+.++++.+++.| + .| ++|+...+ ..+++++|+.+ ||.+.+. .
T Consensus 74 ~~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~---~g-~~d~~~~~~~~~~~~vi~~~-~G~~~~~-----~ 141 (368)
T 1io7_A 74 PLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-D---PR-EDDIVKKLAVPLPIIVISKI-LGLPIED-----K 141 (368)
T ss_dssp THHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-C---TT-SEEHHHHTTTHHHHHHHHHH-HTCCGGG-----H
T ss_pred hHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-h---cC-CccHHHHHHHHHHHHHHHHH-hCCCHHH-----H
Confidence 9999999998 789999999999999999999999998 4 24 79998866 78999999999 9986531 2
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccc
Q 040285 203 REFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICE 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~ 282 (298)
..+...... ... ... .|. . .++..+..+.+.+++.++| + ..+|+++.|+++
T Consensus 142 ~~~~~~~~~----~~~-~~~--~p~-------~-~~~~~~~~~~~~~~~~~~i-------~-----~~~d~l~~ll~~-- 192 (368)
T 1io7_A 142 EKFKEWSDL----VAF-RLG--KPG-------E-IFELGKKYLELIGYVKDHL-------N-----SGTEVVSRVVNS-- 192 (368)
T ss_dssp HHHHHHGGG----CTT-SCC--CTT-------C-HHHHHHHHHHHHHHHHHHT-------T-----SSCHHHHHHHTS--
T ss_pred HHHHHHHHH----HHh-ccC--ChH-------H-HHHHHHHHHHHHHHHHHHh-------C-----CCCCHHHHHHhc--
Confidence 233222111 110 000 121 1 2345555666777776665 1 126999999975
Q ss_pred cCCCCCCHHhhhhhc
Q 040285 283 DKSVEIDINDIKHLF 297 (298)
Q Consensus 283 ~~~~~lt~~~i~~~~ 297 (298)
.+|++++.+.+
T Consensus 193 ----~l~~~ei~~~~ 203 (368)
T 1io7_A 193 ----NLSDIEKLGYI 203 (368)
T ss_dssp ----SCCHHHHHHHH
T ss_pred ----cCCHHHHHHHH
Confidence 38888887653
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.61 E-value=2.5e-15 Score=133.20 Aligned_cols=180 Identities=12% Similarity=0.108 Sum_probs=123.8
Q ss_pred HHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhHHHHHHHHHhhcCChhH
Q 040285 63 KIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQ 142 (298)
Q Consensus 63 ~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~ 142 (298)
++||||+++ | +++++||++++++|.++ ..|++|+....... ++.++ +..+|+.|+++||++ +++|+++.
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l-~~~~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISF-ITMDNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGG-GGCCHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---ccccc-ccCCchHHHHHHHHh-hhhcCHHH
Confidence 589999986 4 99999999999999876 47999873211111 12344 346899999999998 78999999
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-HHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhCCCCc
Q 040285 143 LDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA-FDTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNL 221 (298)
Q Consensus 143 l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (298)
++.+.+.+.++++.+++.|. ++|+...+ ..+++++|+.+ ||.+.+ +...+.+....++..
T Consensus 71 l~~~~~~i~~~~~~l~~~l~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~-----~~~~~~~~~~~~~~~------ 131 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID-------NKDIISEYAVRLPVNIISKI-LGIPDS-----DMPLFKLWSDYIIGN------ 131 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT-------TSCHHHHTTTHHHHHHHHHH-HTCCGG-----GHHHHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHHHHHHHhcc-------ccCHHHHHhhhhhHHHHHHH-cCCCHH-----HHHHHHHHHHHHhhc------
Confidence 99999999999999988874 58988765 89999999998 998653 123444444333221
Q ss_pred cccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCCHHhhhhhc
Q 040285 222 SDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLF 297 (298)
Q Consensus 222 ~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt~~~i~~~~ 297 (298)
+.|.+ .. .++. +..+++.+++.++| . +| ++.|+++..+ +..+|++++.+.+
T Consensus 132 --~~p~~-----~~-~~~~-~~~~~~~~~~~~~i----------~----~d-l~~ll~~~~~-~~~l~~~ei~~~~ 182 (343)
T 2rfb_A 132 --KRDEN-----FN-YVNN-RMVSRLLEIFKSDS----------H----GI-INVLAGSSLK-NRKLTMDEKIKYI 182 (343)
T ss_dssp --CCSSH-----HH-HHHH-HHHHHHHHHHHSCC----------S----SH-HHHHHTCBCS-SSBCCHHHHHHHH
T ss_pred --cCcch-----hh-HHHH-HHHHHHHHHHHHHH----------h----cc-HHHHHhhhcC-CCCCCHHHHHHHH
Confidence 11321 01 1233 44455555554433 1 47 9999976532 3459999987654
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.41 E-value=4.6e-12 Score=115.04 Aligned_cols=147 Identities=12% Similarity=0.110 Sum_probs=103.9
Q ss_pred CCCCceecccC---CCCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCcccc---ccccc
Q 040285 38 PTPYPVIGNLL---ELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDA---IYAHG 111 (298)
Q Consensus 38 P~~~PilGnl~---~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~---~~~~~ 111 (298)
+.|+|.+|-=+ .+..+|+..+.++ +++|||++ ++..++++|++++.+++||.+. ..|+++..... .....
T Consensus 17 ~~~~P~~~~dp~~~~~~~dP~~~~~~l-R~~gPV~~--~~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 17 GAGVPHLGIDPFALDYFADPYPEQETL-REAGPVVY--LDKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp STTSCEECCCTTSHHHHHSCHHHHHHH-HHHCSSEE--ETTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCC
T ss_pred CCCCCccCCCCCCHHHHhCcHHHHHHH-HhcCCEEE--ECCCCEEEECCHHHHHHHHcCC-ccccCCCcccccccccccc
Confidence 45688887211 1236788888776 46899985 5677899999999999999654 45655432111 11111
Q ss_pred cCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceeh-HHHHHHHHHHHHHHHHh
Q 040285 112 HHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHI-GQAAFDTTLNLISNTIF 190 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~-~~~~~~~t~~ii~~~~f 190 (298)
....+..+..+|+.|+++||++ +++|+++.++.+.+.+.+.++.+++.+.+. ++++|+ .+....++.++++.+.
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~---~~~~D~v~~~~~~~~~~~i~~l~- 167 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLAR---GGNIDAIADLAEAYPLSVFPDAM- 167 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEETCCCCCCHHHHHHHHHHH-
T ss_pred ccCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhcc---CCCceeHHHHHhhhhHhHHHHHc-
Confidence 1112334557899999999998 789999999999999999999999988653 456774 5566678888888764
Q ss_pred ccC
Q 040285 191 SID 193 (298)
Q Consensus 191 G~~ 193 (298)
|..
T Consensus 168 g~~ 170 (412)
T 4dnj_A 168 GLK 170 (412)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.27 E-value=1.8e-10 Score=104.60 Aligned_cols=211 Identities=12% Similarity=0.087 Sum_probs=133.3
Q ss_pred CCchHHHHHHHHHhC-CceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccccccccccCCCCcccCCCChhHHHHH
Q 040285 52 DKPHKSLAKLAKIHG-PIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLR 130 (298)
Q Consensus 52 ~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 130 (298)
.+||..+.++.+..+ +++..-.|+ ...+|++++.+++||.+ ...|+++........- ..........+|+.|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~~~-~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKEAG-EKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSSTTSS-CSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCcccccccc-cccccCcccCCcHHHHHHH
Confidence 457777777755443 455443333 57889999999999954 4568776432221111 1112333446899999999
Q ss_pred HHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHH-HHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHH
Q 040285 131 KICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQ-AAFDTTLNLISNTIFSIDLADPTSKTAREFKQTN 209 (298)
Q Consensus 131 r~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~ 209 (298)
|++ +++|++++++.+++.+.+.++.+++.+.+ ++++|+-. +...++..+++.+ +|...+ +...+.+..
T Consensus 114 rll-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~----~g~~D~v~~~a~~l~~~vi~~l-lg~~~~-----d~~~~~~~~ 182 (417)
T 4dxy_A 114 KAL-DKGLNLAKIRKVEDKVREVASSLIDSFAA----RGECDFAAEYAELFPVHVFMAL-ADLPLE-----DIPVLSEYA 182 (417)
T ss_dssp HHH-HHHHCHHHHHTTHHHHHHHHHHHHHHHHT----TSEEEHHHHTTTTHHHHHHHHH-TTCCGG-----GHHHHHHHH
T ss_pred HHh-hhhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCeeeHHHHHhhhHHHHHHHH-cCCCHH-----HHHHHHhhh
Confidence 998 78999999999999999999999998864 34677644 4455667777754 675332 233444333
Q ss_pred HHHHHHhCCCCccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHhhccccCCCCCC
Q 040285 210 WGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEID 289 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~lt 289 (298)
..+.... ...+ .............+.+++.++++++++. ..+|+++.|+.+.. ++..+|
T Consensus 183 ~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~li~~rr~~-------~~ddl~s~L~~~~~-~~~~~~ 241 (417)
T 4dxy_A 183 RQMTRPE------------GNTP-EEMATDLEAGNNGFYAYVDPIIRARVGG-------DGDDLITLMVNSEI-NGERIA 241 (417)
T ss_dssp HHHHSCC------------CSSH-HHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCSHHHHHHTCEE-TTEECC
T ss_pred hhhcccc------------ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cccchhhhhccccc-cCCccc
Confidence 3321110 0111 1112344556677788888888766531 23699999987654 344699
Q ss_pred HHhhhhhc
Q 040285 290 INDIKHLF 297 (298)
Q Consensus 290 ~~~i~~~~ 297 (298)
++++.+.+
T Consensus 242 ~~e~~~~~ 249 (417)
T 4dxy_A 242 HDKAQGLI 249 (417)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 99887654
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.16 E-value=5.3e-09 Score=93.65 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=85.3
Q ss_pred CCCC-CCCCceecccCC-----CCCCchHHHHHHHHHhCCceEEecCCeeEEEecCHHHHHHHHHhCCccccccCccc--
Q 040285 34 LPPG-PTPYPVIGNLLE-----LGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPD-- 105 (298)
Q Consensus 34 ~pPg-P~~~PilGnl~~-----l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~~~~~~evL~~~~~~f~~Rp~~~-- 105 (298)
.||| |++||++|+... +..+|+..+.++.++ ||++.. .+++++++++.+++||.+ ..|++++...
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccc
Confidence 5778 668999997643 346789999988865 999754 468999999999999986 3687764311
Q ss_pred c-------ccccccCCCCcccCCCChhHHHHHHHHHhhcCChhHHhHhHHHHHHHHHHHHHHHHHHhhCCcceehHHHH-
Q 040285 106 A-------IYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAA- 177 (298)
Q Consensus 106 ~-------~~~~~~~~~~~~~~~~g~~Wk~~Rr~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~- 177 (298)
. ...+ + .++.+ .+|+.| +++|+ . .+.+.+.++.+++.|. +++|+...+
T Consensus 108 ~~~~~~~~~~~~--~-~~l~~-~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~------g~~Dl~~~~a 163 (381)
T 2yjn_B 108 WMRAAGAPPAEW--A-QPFRD-VHAASW--------EGEVP-----D-VGELAESFAGLLPGAG------ARLDLVGDFA 163 (381)
T ss_dssp HHHHHTCCHHHH--T-HHHHH-HHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC------------CCCCCC
T ss_pred cccccccccchh--h-hhhhh-CCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc------CcchHHHHHH
Confidence 0 1111 1 23333 468888 46788 2 6678888888888774 258887554
Q ss_pred HHHHHHHHHHHHhccCCC
Q 040285 178 FDTTLNLISNTIFSIDLA 195 (298)
Q Consensus 178 ~~~t~~ii~~~~fG~~~~ 195 (298)
..+++++||++ ||.+.+
T Consensus 164 ~~l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 164 WQVPVQGMTAV-LGAAGV 180 (381)
T ss_dssp THHHHHHHHTC------C
T ss_pred HHHHHHHHHHH-cCCCHH
Confidence 69999999995 998764
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=88.39 E-value=2.5 Score=29.83 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=48.6
Q ss_pred CCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEec---C---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 33 RLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF---G---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~---g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+.||.|..--++||++.- -....+.++..+||+|..+.+ + +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 2 r~~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 2 RLPPEVNRILYIRNLPYK--ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp -CCTTCCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 356777777889998642 234567888899999999887 2 3567888899999988873 455555543
No 79
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=87.77 E-value=3 Score=27.24 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=42.2
Q ss_pred eecccCCCCCC----chHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 43 VIGNLLELGDK----PHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 43 ilGnl~~l~~~----~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
++||++.-... ....+.+...+||+|..+++- +.-.|-..+++.|..++.. ++..+.+|
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 57888643222 346788889999999998875 3456778899999999974 44455555
No 80
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.41 E-value=1.6 Score=30.26 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=47.5
Q ss_pred ceecccCCCCC--CchHHHHHHHHHhC-CceEEecCCeeEEEecCHHHHHHHHHh-CCccccccCc
Q 040285 42 PVIGNLLELGD--KPHKSLAKLAKIHG-PIMSLKFGQVTTVVFSSAAMAKEILQN-QDTSFCNRTI 103 (298)
Q Consensus 42 PilGnl~~l~~--~~~~~~~~~~~~yG-~i~~~~~g~~~~vvv~~~~~~~evL~~-~~~~f~~Rp~ 103 (298)
-++|||..=.+ .....+.++..+|| +|..+ .|++-.|...+.+.|..++.. ++..+-+||.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 34999976422 22346888999995 99998 789999999999999999864 6777778874
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=85.50 E-value=2.5 Score=27.03 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=41.6
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
++||++.- -....+.++..+||++..+.+. +.-.|-..+++.++.++..++..+.+|+
T Consensus 3 ~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 3 FVGGLSPD--TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp EESCCCSS--CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 46776532 2345678888999999888873 2446778899999999987666666654
No 82
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.47 E-value=3 Score=29.04 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=45.5
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.--++||++.- -....+.++..+||+|..+.+. +.-.|...+++.+..++..++..+.+|+
T Consensus 12 ~~lfV~~Lp~~--~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 12 RSVYIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp GCEEEECCCTT--CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred CEEEEECCCCC--CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 35678888642 2345678888999999888774 3566788999999999986666676665
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=81.77 E-value=4.5 Score=25.76 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=41.1
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
++||++.- -....+.++..+||+|..+.+-. .-.|-..+++.++.++.-++..+.+|+
T Consensus 3 ~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 3 FVGGLSVN--TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp EEECCCSS--CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred EEecCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 46777532 23456788889999998887742 345777899999999876666666654
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=79.78 E-value=15 Score=26.54 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
|.|..--+|||+..- -....+.++..+||+|..+++- +.-.|-..+++.|+.++.. ++..+.+|+
T Consensus 43 ~~~~~~l~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCCSSCBCEETCTTS--CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344456778888642 2245678888999999988873 2456778899999999874 455555554
No 85
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=79.57 E-value=4 Score=28.04 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=41.9
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-++||++.- -....+.++..+||+|..+++.. .=.|-..+++.|..++.. ++..+.+|+
T Consensus 22 lfV~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 22 LIVNYLPQN--MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578888642 22457888889999998887632 235778899999998865 555666654
No 86
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.97 E-value=13 Score=25.36 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=45.5
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.- -....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 15 ~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 15 DATVYVGGLDEK--VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp TTEEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 345678988642 23456888899999999988743 346788999999999985 566666665
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.84 E-value=9.6 Score=26.63 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=44.1
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||++. .-....+.++..+||+|..+.+. +.-.|-..+++.|+.++.. ++..+.+|+
T Consensus 12 ~l~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 12 VILAKNLPA--GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEESCCT--TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 356888763 22346788899999999998873 3567778899999988864 566677775
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=78.72 E-value=7.5 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=46.2
Q ss_pred CCceecccCCCCCC----chHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 40 PYPVIGNLLELGDK----PHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 40 ~~PilGnl~~l~~~----~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
.--++||++.-... ....+.++..+||+|..+++- +.-.|-..+++.+..++.. ++..+.+|
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 45679999753221 346788899999999998875 4557788899999999875 56666665
No 89
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.18 E-value=6.8 Score=26.20 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=46.0
Q ss_pred CCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC------C---eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 34 LPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG------Q---VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 34 ~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g------~---~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..|.|..--++||++.- -....+.++..+||+|..+++- . .-.|-..+++.+..++.. ++..+.+|+
T Consensus 10 ~~~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CSCCGGGCEEEESCCSS--CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34445556778998642 2345688888999999888773 2 345677899999999874 455555543
No 90
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.40 E-value=11 Score=25.13 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=45.3
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
|..--++||+..- -....+.++..+||+|..+.+-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 4 ~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 4 GSSGLYVGSLHFN--ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4445678888642 23456888889999998887743 446778899999999873 566677765
No 91
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=76.45 E-value=11 Score=24.48 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.|..--++||++.- -....+.++..+||+|..+++-. .=.|-..+++.+..++.. ++..+.+|+
T Consensus 5 ~~~~~l~V~nl~~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCTT--CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCC--CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34456678888642 23456788889999999988732 346788899999998854 455555543
No 92
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.91 E-value=13 Score=25.29 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=45.6
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.+..--++||+..- -....+.++..+||+|..+++- +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 13 ~~~~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 13 STPKRLHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCCCEEEEESCCTT--CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34446678998642 2245678888999999888873 3457778999999999874 555666664
No 93
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.95 E-value=15 Score=24.17 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC-eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ-VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+.+..--++||++.- -....+.++..+||+|..+++.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 6 ~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAA--CTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp SCCSCCEEEESCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 344456678998642 23456788889999999988754 566778899999998874 556666664
No 94
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.42 E-value=13 Score=25.34 Aligned_cols=67 Identities=19% Similarity=0.114 Sum_probs=47.3
Q ss_pred CCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 34 LPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 34 ~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..+-+..--+|||++.- -....+.++..+||+|..+.+- +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDG--IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCSSCCCEEEECCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred cCCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34445567789998642 2245677888899999888764 2446778999999999874 566666664
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.38 E-value=17 Score=24.58 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCCCCCCceecccCCCCCCchHHHHHHHHH-hCCceEEecC--------CeeEEEecCHHHHHHHHHh-CCcc-ccccC
Q 040285 35 PPGPTPYPVIGNLLELGDKPHKSLAKLAKI-HGPIMSLKFG--------QVTTVVFSSAAMAKEILQN-QDTS-FCNRT 102 (298)
Q Consensus 35 pPgP~~~PilGnl~~l~~~~~~~~~~~~~~-yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~-~~~~-f~~Rp 102 (298)
.+.|..--++||+..- -....+.++..+ ||+|..+++- +.-.|-..+++.+..++.. ++.. +.+|+
T Consensus 5 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPD--VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTT--CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 4455566789998642 234567788888 9999888762 2346778899999999974 3445 66665
No 96
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.32 E-value=10 Score=25.51 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=44.0
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
|..--++||+ .. ....+.++..+||+|..+.++ +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 14 ~~~~l~V~n~-~~---t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 14 KGNTLYVYGE-DM---TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCSEEEEECS-SC---CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCEEEEcCC-CC---CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3345678884 22 345688889999999998886 3556777899999999865 555566654
No 97
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=73.89 E-value=14 Score=26.17 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=44.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--+|||+..- -....+.++..+||+|..+.+. +.-.|-..+++.|..++.. ++..+.+++
T Consensus 24 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 24 ILFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4668888642 2345678888999999998873 3457888999999999864 666777765
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=73.85 E-value=6.2 Score=25.93 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=44.6
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.|..--++||++.- -....+.++..+||+|..+++- +.-.|-..+++.+..++...+..+.+|+
T Consensus 9 ~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 9 EDAGKMFVGGLSWD--TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp SCTTEEEEECCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 34445678998642 2345678888999999888763 1346678899999999976665555543
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.64 E-value=16 Score=23.69 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=43.6
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh--CCcccccc
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN--QDTSFCNR 101 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~--~~~~f~~R 101 (298)
..--++||++.- -....+.++..+||+|..+++. +.-.|-..+++.+..++.. ++..+.+|
T Consensus 12 ~~~l~V~~l~~~--~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 12 ITTLYVGGLGDT--ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCEEEECCTTT--SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred ccEEEEcCCCCC--CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 345678988642 2345678888999999888774 3567778899999999975 44445444
No 100
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=73.26 E-value=13 Score=24.18 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=42.1
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC----------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-++||++.- -....+.++..+||+|..+.+- +.=.|-..+++.+..++.. ++..+.+|+
T Consensus 7 l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 7 VHIGRLTRN--VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEEECCCTT--CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 467887542 2345677888999999888772 2456788899999999874 566666654
No 101
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=73.22 E-value=8 Score=27.22 Aligned_cols=59 Identities=22% Similarity=0.190 Sum_probs=43.0
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecCC-------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ-------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-++|||..- -....+.++..+||+|..+++-. .=.|-..+++.|+.++.. ++..+.+|+
T Consensus 8 lfV~nLp~~--~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 8 IFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCC--CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 578888642 23457888889999998877632 347888999999999865 566666654
No 102
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=73.17 E-value=10 Score=25.88 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=43.6
Q ss_pred CceecccCCCCC----CchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccc-cC
Q 040285 41 YPVIGNLLELGD----KPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCN-RT 102 (298)
Q Consensus 41 ~PilGnl~~l~~----~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~-Rp 102 (298)
.-++||++.... .....+.++..+||+|..+++. +.-.|-..+++.|..++.. ++..+.+ |+
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457888876431 1235778889999999998874 3456888899999998853 4555554 43
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=72.64 E-value=10 Score=25.65 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=41.8
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
++||++.- -....+.++..+||+|..+++. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 4 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 4 YVGNLGTG--AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EEECCCSS--CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 56777542 2345688888999999888763 3566778899999998874 455676765
No 104
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=71.73 E-value=17 Score=24.36 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=45.1
Q ss_pred CCceecccCC-CCCCchHHHHHHHHHhCCceEEecC-CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLE-LGDKPHKSLAKLAKIHGPIMSLKFG-QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~-l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||++. - -....+.++..+||+|..+.+. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 11 ~~l~V~nlp~~~--~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 11 SRLFIGNLPLKN--VSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEEEESSTTSC--CCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CEEEEeCCCccc--CCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3457899874 2 1235678888999999888874 4667788999999999975 566666665
No 105
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=71.46 E-value=14 Score=25.27 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=42.0
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-++||+..- -....+.++..+||+|..+++. +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 26 l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 568888642 2345678888999999888873 2345677899999999874 555566654
No 106
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=71.14 E-value=8.8 Score=24.81 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=40.5
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
++||++.- -....+.++..+||++..+++. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 5 ~V~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNVN--VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCTT--CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 46777532 2245677888999999887763 1346788999999999874 555565554
No 107
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.13 E-value=19 Score=24.15 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=44.0
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.- -....+.++..+||+|..+++- +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 17 ~~~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 17 KHKLFISGLPFS--CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CSCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 446678988642 2345678888999999888774 2456778999999999865 555565554
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=71.07 E-value=12 Score=26.42 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=44.3
Q ss_pred CceecccCCCCCCchHHHHHHHHHhC-CceEEecC-----CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHG-PIMSLKFG-----QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g-----~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++|||..- -....+.++..+|| .|..+.+. +.-.|-..+++.++.++.+ ++..+.+|+
T Consensus 30 ~l~VgnLp~~--~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 30 RITMKNLPEG--CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp EEEEECSSCC--CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5678998642 23467888999999 88887773 4667888999999999865 455566664
No 109
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.46 E-value=18 Score=24.54 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=45.0
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--+|||+..- -....+.++..+||+|..+.+- +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 13 ~~~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 13 MITLKVDNLTYR--TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CeEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345678998642 2345678888999999998874 2456778899999998873 566677765
No 110
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=70.20 E-value=20 Score=23.54 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||++.- -....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 9 ~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 9 CQIFVRNLPFD--FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp CEEEECSCCTT--CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred cEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34568888642 2345688888999998887763 2346677899999998874 555666664
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.02 E-value=18 Score=24.91 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=44.0
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||+..- -....+.++..+||+|..+++. +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 26 ~~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 26 CTVYCGGIASG--LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CEEEEECCSSC--CCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34568888642 2345677888999999888874 4667788999999998854 555666654
No 112
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=69.77 E-value=5 Score=20.06 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=13.2
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 040285 4 VSCVPWLLFSWILVVALNY 22 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (298)
|.++.++++..+.+.++.|
T Consensus 4 iVA~~lLIviav~aaVlly 22 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777776677777777
No 113
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.72 E-value=22 Score=23.80 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=45.9
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
|..--++||+..- -....+.++..+||+|..+.+- +.-.|-..+++.+..++.-++..+.+|+
T Consensus 9 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 9 KSNKIFVGGIPHN--CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp SCCEEEEESCCSS--CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 3345678988642 2345678888999999888873 2456778999999999976677777765
No 114
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=69.66 E-value=30 Score=25.31 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=44.9
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.-. ....+.++..+||+|..+.+. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 73 ~~~l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 73 DCKVYVGNLGNNG--NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp SCEEEEESCCSCC--SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3456789986431 235677888999999988874 3567788999999999874 566666665
No 115
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=69.53 E-value=17 Score=25.51 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=43.9
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC--CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++|||..-. ....+.++..+||+|..+.+- +.-.|-..+++.|+.++.. ++..+.+|.
T Consensus 18 ~l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 18 RVVVSGLPPSG--SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp CEEEEECCSSC--CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45689987432 234577788899999888874 4667788899999998873 566677765
No 116
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.31 E-value=19 Score=24.13 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=44.1
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.- -....+.++..+||+|..+++-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 8 ~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 8 SGRLFVRNLSYT--SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CEEEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345678888642 23456888889999999988742 456788999999999843 455566654
No 117
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.02 E-value=17 Score=24.35 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=42.3
Q ss_pred CceecccCCC-C-CCchHHHHHHHHHhCCceEEecC------CeeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 41 YPVIGNLLEL-G-DKPHKSLAKLAKIHGPIMSLKFG------QVTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l-~-~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
--++||++.- . ......+.++..+||+|..+++. +.-.|-..+++.|..++. -++..+.+|+
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4678998643 2 12222344889999999998874 345677889999998887 3455566654
No 118
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=69.00 E-value=16 Score=24.30 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=43.5
Q ss_pred CCceecccCCC-C-CCchHHHHHHHHHhCCceEEecC------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLEL-G-DKPHKSLAKLAKIHGPIMSLKFG------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l-~-~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||++.- . ......+.++..+||+|..+.+- +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 9 ~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678998643 2 11223444889999999988775 4567888999999999874 555555553
No 119
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.92 E-value=24 Score=23.93 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=45.7
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCCe----------eEEEecCHHHHHHHHHh--CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQV----------TTVVFSSAAMAKEILQN--QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~----------~~vvv~~~~~~~evL~~--~~~~f~~Rp 102 (298)
..--+|||++.- -....+.++..+||+|..+++-.. -.|-..+++.+..++.. ++..+.+|+
T Consensus 15 ~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 15 TSKILVRNIPFQ--ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCCEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCEEEEeCCCCc--CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345678998642 234568888899999999888433 46777899999999876 567777765
No 120
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=68.68 E-value=18 Score=24.84 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=42.6
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-++||++.- -....+.++..+||+|..+++. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 29 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 29 LFVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 568888642 2345678888999999998874 3457778999999999874 455555553
No 121
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=68.63 E-value=21 Score=23.94 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceE--------EecC---------CeeEEEecCHHHHHHHHHh-CCcccc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMS--------LKFG---------QVTTVVFSSAAMAKEILQN-QDTSFC 99 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~--------~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~ 99 (298)
|..--++||+..- -....+.++..+||.+.. +++. +.-.|-..+++.+..++.. ++..+.
T Consensus 12 ~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 12 DNNTIFVQGLGEN--VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCSEEEEECCCSS--CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3345668888642 234567888899999876 5542 1345677899999998863 555565
Q ss_pred ccC
Q 040285 100 NRT 102 (298)
Q Consensus 100 ~Rp 102 (298)
+|+
T Consensus 90 g~~ 92 (99)
T 2la6_A 90 GNP 92 (99)
T ss_dssp SSB
T ss_pred CcE
Confidence 554
No 122
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.44 E-value=18 Score=24.16 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=44.4
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecC------------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG------------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g------------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.- -....+.++..+||+|..+.+. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 5 ~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFS--TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 345678888642 2345678888999999887764 2446778899999999985 566666654
No 123
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.43 E-value=22 Score=24.82 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=46.3
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh---CCccccccC
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN---QDTSFCNRT 102 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~---~~~~f~~Rp 102 (298)
|.|..--++|||..- -.-..+.++..+||.|-.+++. +.=.|-..+++.|..++.. .+..+.+|+
T Consensus 13 ~~~~~~LfV~nLp~~--vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTT--SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 444456778998642 2345678899999999988874 4567888899999988873 234566665
No 124
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=68.16 E-value=8.4 Score=26.83 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=46.6
Q ss_pred CCCCCCCceecccCCC---CCCchHHHHHHHHHhCCceEEecCC----------eeEEEecCHHHHHHHHHh-CCccccc
Q 040285 35 PPGPTPYPVIGNLLEL---GDKPHKSLAKLAKIHGPIMSLKFGQ----------VTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 35 pPgP~~~PilGnl~~l---~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
.|.|...-+|+|+..- .......+.+...+||+|-.+++-. .-.|-..+++.|..++.. ++..|.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4556677888888642 2334567778888999998887631 335677898888877754 5667777
Q ss_pred cC
Q 040285 101 RT 102 (298)
Q Consensus 101 Rp 102 (298)
|+
T Consensus 84 r~ 85 (105)
T 2pe8_A 84 RV 85 (105)
T ss_dssp EE
T ss_pred cE
Confidence 75
No 125
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.11 E-value=23 Score=23.36 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=43.3
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
|..--++||++.- -....+.++..+||+|..+++-. .-.|-..+++.+..++.. ++..+.+|
T Consensus 15 ~~~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 15 SKSTVYVSNLPFS--LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CTTSEEEESCCTT--SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3446778998642 23456788889999999888732 457788999999999853 34444444
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.22 E-value=22 Score=23.49 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC-eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ-VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.- -....+.++..+||+|..+.+.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 10 ~~~l~V~nLp~~--~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 10 STKLHVGNISPT--CTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp SEEEEEESCCSS--CCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 345678998642 23456888899999998888754 555667889999988864 556666654
No 127
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=66.95 E-value=8.7 Score=25.22 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=40.9
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
++||++.- -....+.++..+||+|..+++-. .-.|-..+++.++.++.-++..+.+|+
T Consensus 10 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDYG--ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 57777532 23456788889999998877632 346778899999998855566666654
No 128
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.75 E-value=14 Score=25.21 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
+..--+|||+..- -....+.++..+||+|..+++.. .-.|-..+++.+..++..++..+.+|+
T Consensus 15 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 15 EIGKLFVGGLDWS--TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SSSEECCBSCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 3345668888642 23456788889999998877632 345778899999999987666676664
No 129
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=66.69 E-value=13 Score=25.75 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=42.9
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+.+ -+.-.|-..+.+.+..++.. ++..+.+|+
T Consensus 33 ~l~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 33 RLFVRPFPLD--VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EEEECSSCTT--CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4568887542 224567888899999888776 45677778899999998874 555565553
No 130
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=66.63 E-value=14 Score=27.89 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=42.4
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-+|||++.- -....+.++..+||+|..+.+. +.-+|-..+++.+..++.. ++..+.+++
T Consensus 75 l~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 75 LFVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 678888642 2346688888999999887764 2456778899999998864 555565554
No 131
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=66.60 E-value=9 Score=25.02 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=41.8
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+++-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 8 ~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 8 HVFVGDLSPE--ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4568888642 23456788889999998877632 346778899999999874 455555543
No 132
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.51 E-value=16 Score=24.64 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+.|..--++||++.- -....+.++..+||+|..+++.. .-.|-..+++.|..++.. ++..+.+|+
T Consensus 9 ~~~~~~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCCCSCEEEESCCSS--CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345556778998642 23466888889999998888732 345667889999998864 556666664
No 133
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=66.49 E-value=11 Score=26.42 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC------C---eeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG------Q---VTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g------~---~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
|..--++||+..- -....+.++..+||+|..+++- . .=.|...+++.|+.++.. ++..+.+|
T Consensus 5 p~~~lfV~nL~~~--~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 5 PLKEVTFARLNDN--VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3345678998642 2345688888999999988773 1 346888999999999864 44455554
No 134
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=66.13 E-value=26 Score=25.84 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=45.2
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.- -....+.++..+||+|..+.+.. .-.|-..+.+.+..++.. ++..+.+|+
T Consensus 70 ~~~l~v~nl~~~--~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 70 MTSLKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp CCEEEEESCCTT--CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345668888642 23456788889999999988754 246788999999999975 566676665
No 135
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.04 E-value=22 Score=23.76 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=45.0
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCce-EEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIM-SLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~-~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+.|..--++||++.- -....+.++..+||+|. .+++-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 6 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPY--MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTT--CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCCC--CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 344556678998642 23456788889999988 776632 346677899999999974 455566654
No 136
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.78 E-value=7.9 Score=24.62 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=39.2
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
++||++.- -....+.+...+||++..+.+.. .-.|-..+++.+..++......+.+|+
T Consensus 4 ~v~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 4 FIGGLSWQ--TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp EEESCCSS--CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 57777542 12345778888999988777632 335666789999999876555555554
No 137
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=65.61 E-value=14 Score=26.30 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=42.7
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||+ .. ....+.++..+||+|..+.++ +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 40 ~~lfVgnl-~~---te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 40 NTLYVYGE-DM---TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CEEEEECS-SC---CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CEEEEcCC-CC---CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34568883 22 346788889999999888876 4566777899999988864 555666654
No 138
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=65.60 E-value=15 Score=25.50 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=44.4
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
..--++||+..- -....+.++..+||+|..+++-. .-.|-..+++.+..++...+..+.+|+
T Consensus 25 ~~~lfV~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 25 GCKMFIGGLSWQ--TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp -CCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 345678888632 22456778889999998888743 347888999999999987665565553
No 139
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.37 E-value=18 Score=25.15 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=44.8
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.--+|||+..- -....+.++..+||+|..+++-. .-.|-..+++.++.++......+.+|+
T Consensus 18 ~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 18 TKIFVGGLPYH--TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp SEEEEECCCSS--CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 45678888642 23456788889999999888754 346778999999999976555666664
No 140
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.14 E-value=28 Score=23.34 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=45.6
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.|..--++||++.- -....+.++..+||+|..+++-. .-.|-..+++.|..++.. ++..+.+|+
T Consensus 10 ~~~~~l~v~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 10 SDEGKLFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCSEEEEESCCTT--CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34456778998642 23456788889999998888744 346777899999998854 566676665
No 141
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.09 E-value=25 Score=23.98 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=44.7
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceE-EecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMS-LKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~-~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
..-++|||+.- -....+.++..+||.|-. +.+. +.-.|-..+++.++.++..++..+.+|+
T Consensus 16 ~~l~V~nLp~~--~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 16 GFVRLRGLPFG--CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CEEEEESCCTT--CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 35578888642 224567888889998764 5442 3567888999999999998777777775
No 142
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=64.51 E-value=12 Score=26.48 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=42.0
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
-++||+..- -....+.++..+||+|..+.+-. .=.|-..+.+.+..++.-++..+.+|+
T Consensus 39 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 39 VYVGNVDYG--STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp EEEEEECTT--CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 467887532 23456788889999998877632 346788999999999954566666664
No 143
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=64.36 E-value=24 Score=25.37 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=43.1
Q ss_pred CceecccCCC-CC-CchHHHHHHHHHhCCceEEecC------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLEL-GD-KPHKSLAKLAKIHGPIMSLKFG------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l-~~-~~~~~~~~~~~~yG~i~~~~~g------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- .. ..-..+.++..+||+|..+.+. +.=.|...+++.|..++.. ++..+.+|+
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 4678998642 21 1223466789999999888773 3557788899999988864 455666665
No 144
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.07 E-value=9 Score=26.82 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=43.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+++-. .-.|-..+++.+..++..++..+.+|+
T Consensus 29 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 29 KLFIGGLSFE--TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEEEECCTTC--CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 4568888642 23456788889999998877632 446777899999999987666666664
No 145
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.06 E-value=16 Score=24.78 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=45.0
Q ss_pred CCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC----------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 35 PPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ----------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 35 pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
++.|..--++||+..- -....+.++..+|| |..+++-. .-.|-..+++.+..++.-++..+.+|+
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp CSSSCEEEEEESCCSS--CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCCCEEEEeCCCCc--CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 3344445678998642 22456778888999 88888731 346788999999999955566666664
No 146
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=64.05 E-value=25 Score=23.38 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=41.7
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+++- +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 4 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 4 VVYLGSIPYD--QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3467887532 2245678888999999998873 2456778899999998854 444555543
No 147
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=63.10 E-value=26 Score=24.17 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=42.5
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+.+- +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 28 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 28 RLYVGSLHFN--ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEEEECCCSS--CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 5668988642 2345678888999999887763 2456778999999999863 455566554
No 148
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=62.86 E-value=24 Score=23.83 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=37.4
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHH
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQ 92 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~ 92 (298)
..|-++||+..= ---..+.++..+||+|..+++. +.-.|=..+++.|..+..
T Consensus 7 ~~wL~VgNL~~~--~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 7 SSWLLLKNLTAQ--IDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp CCEEEEECCCTT--CCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred cceEEEeCCCcc--CCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 458889998642 2235788999999999998874 345666677777766654
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=62.64 E-value=18 Score=24.70 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=42.2
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||+|..+++- +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 31 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 31 KLLVSNLDFG--VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 5668887642 2345678888999999887764 1346677899999999875 555555553
No 150
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.29 E-value=22 Score=23.96 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=40.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
--++||+..- -....+.++..+||+|..+++. +.-.|-..+++.+..++.. ++..+.+|
T Consensus 10 ~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 10 SVFVGNIPYE--ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp CEEEESCCTT--SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred EEEEeCCCCc--CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4568887632 2345678888999998887764 2346677899999999963 44455444
No 151
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.25 E-value=34 Score=23.31 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=42.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--+|||+..- -....+.++..+||+|..+++-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 24 ~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 24 RIYVGNLPPD--IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4668888642 23456888899999998877632 347788999999998843 455566654
No 152
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.68 E-value=23 Score=24.38 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=47.9
Q ss_pred CCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---eeEEEecCHHHHHHHHHh---CCccccccCc
Q 040285 33 RLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---VTTVVFSSAAMAKEILQN---QDTSFCNRTI 103 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvv~~~~~~~evL~~---~~~~f~~Rp~ 103 (298)
+..+.|..--++|||+.- .-.-..+.++..+||.|..+++.. .=.|-..+++.|..++.. ....+.+|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~-~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRG-KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCCCEEEEESCCCS-SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCC-cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 334455566789999741 122356778889999999998763 457788899999888763 2334666653
No 153
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.53 E-value=34 Score=23.01 Aligned_cols=63 Identities=19% Similarity=0.101 Sum_probs=44.7
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC-------eeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ-------VTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
+..--+|||++.- -....+.++..+||+|..+++-. .-.|-..+++.+..++. -++..+.+|+
T Consensus 14 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 14 QPRTLYVGNLSRD--VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCEEEEESCCTT--CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCcc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3446678998642 23456888889999998887743 45677889999999887 3455566654
No 154
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=60.54 E-value=13 Score=28.97 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=44.0
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
-++||++. ......+.++..+||+|..+++- +.-.|-..+++.|..++...+..+.+|+
T Consensus 112 l~V~nLp~--~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 112 VYIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEEECCCT--TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EEecCCCC--cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 36788764 23456788899999998887663 3456778899999999987666677665
No 155
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=60.36 E-value=22 Score=24.65 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=44.9
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.+..--+|||+..- -....+.++..+||+|..+++-. .-.|-..+++.|..++.. ++..+.+|+
T Consensus 13 ~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPE--ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp TTCEEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34445678988642 23456788889999998887632 346778899999999974 455666664
No 156
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=60.32 E-value=31 Score=22.24 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=41.8
Q ss_pred CceecccCCCCCCchHHHHHHHHHh----C-------CceEEecC---CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIH----G-------PIMSLKFG---QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~y----G-------~i~~~~~g---~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+| | ++..+++. +.-.|-..+++.+..++.-++..+.+|+
T Consensus 8 ~l~V~nLp~~--~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 8 RLYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 4568888642 2345677777888 8 89888875 4567778899999998854555555553
No 157
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=60.30 E-value=31 Score=24.90 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=43.7
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--+|||++.- -....+.++..+||+|..+.+.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 49 ~l~V~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 49 SLKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CEEEECCCSS--CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4668888642 23456788889999999988753 347788999999999964 455566654
No 158
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=60.03 E-value=22 Score=26.64 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=41.5
Q ss_pred ceecccCCCCCCchHHHHHHHHHhC--CceEEecC------C---eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHG--PIMSLKFG------Q---VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG--~i~~~~~g------~---~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-+||||..- -....+.++..+|| +|..+++. . .=.|-..+++.+..++.. ++..+.+|+
T Consensus 58 lfVgnLp~~--~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 58 VYVGSFSWW--TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp EEEECCCTT--CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 457776532 22456888899999 89888862 1 347788899999999987 555555553
No 159
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=59.97 E-value=35 Score=22.87 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=41.5
Q ss_pred CceecccCC-CCCCchHHHHHHHHHhCCceEEecC-CeeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 41 YPVIGNLLE-LGDKPHKSLAKLAKIHGPIMSLKFG-QVTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 41 ~PilGnl~~-l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
--++||+.. - -....+.++..+||+|..+.+. +.-.|-..+++.+..++.. ++..+.+|
T Consensus 24 ~l~V~nLp~~~--~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 24 RLFIGNLPLKN--VSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp EEEEESCCSSC--CCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred EEEEeCCCccc--CCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 456888863 2 1235678888999999998874 4566778899999998873 34444444
No 160
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.95 E-value=18 Score=24.94 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=42.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+++. +.-.|-..+++.|+.++.. ++..+.+|+
T Consensus 31 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 31 RLHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEEEESCCTT--CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCc--CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4568888642 2345678888999999888874 3556778899999988874 555565554
No 161
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.90 E-value=27 Score=23.39 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=43.7
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||++.- -....+.++..+||+|..+++. +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 16 ~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 16 SRLFVGNLPPD--ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp TEEEEESCCTT--CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CEEEEeCCCCC--CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 45678998642 2345678888999999888875 3556677889999888854 556666665
No 162
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=59.87 E-value=14 Score=26.21 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=47.0
Q ss_pred CCCCCCCceecccCCCC--CC------chHHHHHHHHHhCCceEEecC-----CeeEEEecCHHHHHHHHHh-CCccccc
Q 040285 35 PPGPTPYPVIGNLLELG--DK------PHKSLAKLAKIHGPIMSLKFG-----QVTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 35 pPgP~~~PilGnl~~l~--~~------~~~~~~~~~~~yG~i~~~~~g-----~~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
+|-|...-+|-|+.... .+ ....+.+...+||.|..+.+- +.-.|-..+++.|..++.. ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 67777788888886652 22 223556667899999998873 3456777888888877754 5666777
Q ss_pred cC
Q 040285 101 RT 102 (298)
Q Consensus 101 Rp 102 (298)
|+
T Consensus 83 R~ 84 (114)
T 3s6e_A 83 KM 84 (114)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 163
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.85 E-value=15 Score=25.58 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=41.5
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
-++||+..- -....+.++..+||.|..+.+. +.-.|-..+++.+..++.-++..+.+|+
T Consensus 28 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 95 (114)
T 2cq4_A 28 VFCMQLAAR--IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP 95 (114)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence 468887542 2245678888999999998874 2456778899999988854565565553
No 164
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=59.54 E-value=33 Score=22.95 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=40.9
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
--++||+..- -....+.++..+||.|..+++. +.-.|-..+.+.+..++.. ++..+.+|
T Consensus 29 ~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 29 TAYIGNIPHF--ATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEcCCCcc--cCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3568888642 2345678888999999888874 3556677889988888864 44445444
No 165
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=59.05 E-value=26 Score=24.25 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=42.8
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--+|||+..- -....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 26 ~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 26 ANLFIYHLPQE--FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CCEEEESCCSS--CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35678988642 22456888889999998877632 346677899999998865 555566654
No 166
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.04 E-value=7.3 Score=27.20 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=44.4
Q ss_pred CCCceecccCCCCCCchHHHH---HHHHHhCCceEEecCC------------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLA---KLAKIHGPIMSLKFGQ------------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~---~~~~~yG~i~~~~~g~------------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||++.-. ....+. ++..+||+|..+.+-. .-.|-..+++.|..++.. ++..+.+|+
T Consensus 15 ~~~l~V~nLp~~~--~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 15 KNLVFVVGLSQRL--ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp SSCEEEEEECTTT--CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEECCCCCC--CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 3456789986531 223455 7888999998887642 446777899999999986 677777775
No 167
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=58.70 E-value=20 Score=23.68 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=42.8
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||++.- -....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~~l~v~nlp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 17 RTVFVGNLEAR--VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp GEEEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 35678888642 23456788889999998887742 346778899999998873 455555553
No 168
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=58.31 E-value=18 Score=23.87 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=38.8
Q ss_pred eecccCCCCCCchHHHHHHHHHhC--CceEEecCC---------eeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHG--PIMSLKFGQ---------VTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG--~i~~~~~g~---------~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
++||+..- -....+.++..+|| ++..+++.. .-.|-..+++.++.++. -++..+.+|+
T Consensus 5 ~V~nL~~~--~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCCC--CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 57887542 23456788889999 887777532 24667789999998885 3455666664
No 169
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=57.93 E-value=37 Score=23.70 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=45.3
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+..--+|||+..- -....+.++..+||+|..+.+.. .-.|-..+.+.|..++.. ++..+.+|+
T Consensus 6 ~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 6 HPGKLFIGGLNRE--TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp SCCEEEEECCTTT--CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3345678888642 23456788889999998877743 456778899999999874 566677765
No 170
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.36 E-value=37 Score=22.14 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC-CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.|..--++||++.- -....+.++..+||+|..+++- +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 6 ~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSS--CCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 34445678988642 2345688889999999888764 4666778899999988853 455566664
No 171
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.25 E-value=42 Score=22.75 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=43.0
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCC-ceEEecC----------CeeEEEecCHHHHHHHHHhC---CccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGP-IMSLKFG----------QVTTVVFSSAAMAKEILQNQ---DTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~-i~~~~~g----------~~~~vvv~~~~~~~evL~~~---~~~f~~Rp 102 (298)
--++||++. ......+.++..+||+ |..+.+- +.-.|-..+++.+..++..- ...+.+|+
T Consensus 10 ~l~V~nLp~--~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 10 RLFIGGIPK--MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp EEEEECCCT--TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred EEEEeCCCC--cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 457888864 2234567888899998 8888774 25567788999999999752 25666664
No 172
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.20 E-value=39 Score=22.39 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---eeEEEecCHHHHHHHHHh-CCcccc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---VTTVVFSSAAMAKEILQN-QDTSFC 99 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvv~~~~~~~evL~~-~~~~f~ 99 (298)
|..--++||++.- -....+.++..+||+|..+++.. .-.|-..+++.+..++.. ++..+.
T Consensus 16 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 16 PTTRLWVGGLGPN--TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCSCEEEECCCSS--CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 3446678988642 22456788889999999888753 556777899999988874 455555
No 173
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.06 E-value=41 Score=22.56 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=43.5
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
|..--++||++.- -....+.++..+||+|..+.+-. .-.|-..+++.+..++.+ ...+.+|+
T Consensus 14 ~~~~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~ 84 (103)
T 2cqg_A 14 KTSDLIVLGLPWK--TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRW 84 (103)
T ss_dssp CCCCEEEESCCSS--CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEE
T ss_pred CCCEEEEEcCCCc--CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeE
Confidence 3445678997642 23456788889999998877632 345677899999999974 55566554
No 174
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.71 E-value=29 Score=23.80 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=44.2
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh---CCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN---QDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~---~~~~f~~Rp 102 (298)
|...-++||+.. .-....+.++..+||.|..+.+. +.=.|-..+.+.|..++.. +...+.+|+
T Consensus 14 p~~~l~V~nLp~--~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 14 PSRVLHIRKLPG--EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCSEEEEESCCT--TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 334677999874 22345677888999999888764 3567778899989888763 344566665
No 175
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=56.70 E-value=38 Score=24.16 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=37.7
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~ 93 (298)
--++||++.- -....+.++..+||+|..+++. +.-.|-..+++.++.++..
T Consensus 65 ~l~v~nlp~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 65 VLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEEEECCCTT--CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEEEeCCCC--CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4567887542 2245688888999999998873 2356778899999999864
No 176
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.69 E-value=31 Score=23.75 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=42.7
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCc----eEEec--C---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPI----MSLKF--G---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i----~~~~~--g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
|..--++||+..- -....+.++..+||.| ..+.+ | +.-.|-..+++.|..++.. ++..+.+|+
T Consensus 24 ~~~~l~V~nLp~~--~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 24 PNKVLYLKNLSPR--VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSEEEEECCCTT--CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3446678998642 2345677888899987 44443 2 3456778999999999975 566666665
No 177
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=56.60 E-value=34 Score=23.43 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=43.0
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecC-CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--+|||+..-. -....+.++..+||+|..+.+. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 28 ~~l~V~nl~~~~-~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 28 SRVFIGNLNTAL-VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp SEEEECSCCCSS-CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEeCCCccc-CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345788886420 2345688888999999888874 3555667889999988854 555566654
No 178
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=56.43 E-value=40 Score=25.63 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=39.3
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC-----CeeEEEecCHHHHHHHHHh-CCcccc
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-----QVTTVVFSSAAMAKEILQN-QDTSFC 99 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-----~~~~vvv~~~~~~~evL~~-~~~~f~ 99 (298)
-++||+.. .-....+.+...+||.|-.+++. +.=.|-..+.+.|.+++.. ++..+.
T Consensus 49 l~VgNL~~--~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 49 IIVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp EEECSCCS--CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred EEEeCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 34899853 22345688889999999888873 2456778899988888874 344453
No 179
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.13 E-value=26 Score=24.70 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=46.2
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---eeEEEecCHHHHHHHHHh---CCccccccCc
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---VTTVVFSSAAMAKEILQN---QDTSFCNRTI 103 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvv~~~~~~~evL~~---~~~~f~~Rp~ 103 (298)
+.|..--++||+..- +-....+.++..+||.|..+++.. .=.|-..+.+.|..++.. ....+.+|+.
T Consensus 22 ~~p~~~l~V~NLp~~-~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHS-GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCS-SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCc-cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 334456779998752 022356778889999999988863 456777888888888763 3445777763
No 180
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=55.92 E-value=20 Score=23.49 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=37.7
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
++||+..- -....+.++..+||+|..+++.. .-.|-..+++ +.+++.. ++..+.+|+
T Consensus 5 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 5 YVGNLVYS--ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEECTT--SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred EECCCCCC--CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 56777532 22345777788999998888742 3456778888 8887764 455555554
No 181
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.70 E-value=39 Score=22.49 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=44.1
Q ss_pred CCceecccCCCCCCchHHHHHHHHHh--CCceEEecC-CeeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIH--GPIMSLKFG-QVTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~y--G~i~~~~~g-~~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
.--++||+..- -....+.++..+| |.|..+.+- +.-.|-..+++.|..++. -++..+.+|+
T Consensus 16 ~~l~V~nLp~~--~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 16 KILYVRNLMLS--TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CEEEEESCCTT--CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678988642 2345688888999 889888874 366677889999999887 4555666654
No 182
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=55.55 E-value=30 Score=22.81 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=37.5
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHH
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEI 90 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~ev 90 (298)
+-|...-++||+..- ---..+.+...+||+|..+++. +.-.|-..+++.|+++
T Consensus 8 ~~~~~~l~V~~Lp~~--~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 8 HHHGSKVFVGRCTED--MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ---CCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 344456778998642 2245678888999999999885 4667888999998853
No 183
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.52 E-value=46 Score=22.62 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=44.3
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHhC-------Ccccccc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQNQ-------DTSFCNR 101 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~~-------~~~f~~R 101 (298)
|..--+|||++.- -....+.++..+||+|..+.+- +.-.|-..+++.+..++..- +..+.+|
T Consensus 14 ~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 14 EGKTVFIRNLSFD--SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456779998642 2345678888999999988874 23467778999999998753 4455555
Q ss_pred C
Q 040285 102 T 102 (298)
Q Consensus 102 p 102 (298)
+
T Consensus 92 ~ 92 (111)
T 1x4h_A 92 Q 92 (111)
T ss_dssp E
T ss_pred E
Confidence 4
No 184
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=55.41 E-value=22 Score=27.12 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=44.7
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.--++||++.- -....+.++..+||+|..+++-. .-.|-..+++.|..++...+..+.+|+
T Consensus 14 ~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 14 RKLFIGGLSFE--TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp GEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 35678998642 23456788899999998877631 456888999999999987666666654
No 185
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.35 E-value=22 Score=22.95 Aligned_cols=55 Identities=24% Similarity=0.153 Sum_probs=38.7
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~ 93 (298)
.|..--++||++.- -....+.++..+||+|..+++.. .-.|-..+++.+..++..
T Consensus 3 ~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 3 SGSSGLYIRGLQPG--TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCCEEEEESCCTT--CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 34456678998642 22356777888999998887632 346778899999988863
No 186
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.25 E-value=44 Score=23.77 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=44.6
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh---CCccccccCc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN---QDTSFCNRTI 103 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~---~~~~f~~Rp~ 103 (298)
|...-++|||..- -.-..+.++..+||.|..+.+. +.=.|-..+.+.|..++.. .+..+.+|+.
T Consensus 30 ps~~LfVgNLp~~--vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 30 PSRVIHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CCSEEEEESCCTT--CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 3345779998742 2245678899999999888775 4567777889988888763 2345667753
No 187
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=54.92 E-value=46 Score=23.82 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=42.8
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--+|||+..- -....+.++..+||+|..+++-. .-.|-..+++.|..++.. ++..+.+|+
T Consensus 44 ~l~V~nLp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 44 NLMVNYIPTT--VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEEEESCSTT--CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4568887542 23456888899999998887731 346778899999999974 566666664
No 188
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=54.64 E-value=46 Score=22.38 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=45.4
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC-eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ-VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--+|||++.- -....+.++..+||+|..+.+-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 11 ~~~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 11 VKVLFVRNLANT--VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCEEEECCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 345678998642 23456788889999999988753 566778899999999874 566666664
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=54.50 E-value=42 Score=25.86 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=41.6
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-++||+..- -....+.++..+||+|..+++- +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 31 l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 31 VYVGSIYYE--LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEEECCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 467887542 2345688889999999988873 3456788899999999973 455555543
No 190
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.49 E-value=30 Score=22.90 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=41.9
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC----eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ----VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~----~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+-.-. .-.|-..+++.+..++.-++..+.+|+
T Consensus 10 ~l~V~nl~~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 10 SVFVSGFPRG--VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEEEECCCTT--CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 3468888642 23456788889999988763322 345677899999999986666666664
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=54.29 E-value=32 Score=25.29 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=43.3
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
--++||++.- -....+.+...+||+|..+.+-. .-.|-..+++.|..++..++..+.+|+
T Consensus 89 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 89 KIFVGGIGPD--VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEEEECTT--CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred eEEECCCCCC--CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 4567887542 23456788889999998887643 346778899999999986666666664
No 192
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.26 E-value=31 Score=22.80 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=42.4
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEE-ecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSL-KFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~-~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||++.- -....+.++..+||+|..+ ++.. .-.|-..+++.|..++.. ++..+.+|+
T Consensus 6 ~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 6 SGIFIGNLDPE--IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CEEEEECCCTT--CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35568888642 2345688888999998766 5532 456778999999999973 455566654
No 193
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.87 E-value=51 Score=22.42 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=42.8
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC--CeeEEEecCHHHHHHHHHh-CCccccc
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--QVTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
--++|||..- -....+.++..+||+|..+++- +.-.|-..+++.++.++.. ++..+.+
T Consensus 17 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 17 RVVVSGLPPS--GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEEEESCCSS--CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 4568988642 2346788888999999888774 4677888999999999874 4445555
No 194
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=52.43 E-value=20 Score=20.73 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhccCC
Q 040285 15 ILVVALNYFSRGFKSG 30 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (298)
++++++.+|+++++.+
T Consensus 26 i~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhheehhhhh
Confidence 3344444455544444
No 195
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.22 E-value=52 Score=22.46 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 55 HKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
...+.++..+||+|..+++. +.=.|-..+++.|..++.. ...+.+||
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 56788999999999988873 2456788899999999976 44455555
No 196
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.20 E-value=20 Score=25.00 Aligned_cols=66 Identities=9% Similarity=-0.047 Sum_probs=45.1
Q ss_pred CCCCCCCceecccCCCCCCchHHHHHHHHHhCCc-eEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 35 PPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPI-MSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 35 pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i-~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.|.+..--++|||+.- -....+.++..+||.+ ..+++. +.-.|-..+++.+..++..++..+.+|+
T Consensus 11 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFS--ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE 85 (114)
T ss_dssp CCSCCCEEEEESCCTT--SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred CCCCccEEEEeCcCCc--CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence 3444556678998642 2235677888899988 444442 3567788999999999987666666654
No 197
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.00 E-value=54 Score=22.40 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=44.0
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--+|||+..- -....+.++..+||+|..+++-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 15 ~~~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYK--VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CSCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 346678998642 23456888889999998777632 346778899999998874 566666664
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=51.82 E-value=58 Score=25.70 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=44.9
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
--++||+..- .-....+.++..+||+|..+++- +.-.|-..+++.|..++. -++..+.+|+
T Consensus 36 ~l~V~nLp~~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 36 VLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEEESCCTT-TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEEeCCCcc-cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4668998641 11235678888999999998875 456788899999999986 4566677765
No 199
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=51.77 E-value=24 Score=23.83 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=40.3
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecCC----------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ----------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
-++||+..-. ....+.++..+|| |..+++.. .-.|-..+.+.+..++.-++..+.+|+
T Consensus 22 l~V~nLp~~~--t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 22 AFLGNLPYDV--TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EEESCCSSCC--SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 4578886431 1235677788999 98888743 446788999999999955666666654
No 200
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=50.00 E-value=29 Score=25.40 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=41.6
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-++||++.- -....+.++..+||+|..+++-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 5 l~v~nlp~~--~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 5 LIVNYLPQN--MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEcCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 357777532 23456888899999998877632 346778999999999973 555666654
No 201
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.92 E-value=52 Score=21.62 Aligned_cols=61 Identities=23% Similarity=0.156 Sum_probs=41.9
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEe-cCC-----eeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLK-FGQ-----VTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~-~g~-----~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
.--++||++.- -....+.++..+||+|..+. +.. .-.|-..+++.+..++. -++..+.+|+
T Consensus 16 ~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 16 RKLQIRNIPPH--LQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CCEEEEEECSS--SCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CEEEEEcCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35678998642 23456788889999998883 432 24677889999998886 3455565554
No 202
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.37 E-value=24 Score=23.90 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=44.7
Q ss_pred CCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 34 LPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 34 ~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.++.|..--++||++.- -....+.++..+|| |..+++.. .-.|-..+++.+..++.-++..+.+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFN--TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CCSSSCEEEEEESCCTT--CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCCeEEEEeCCCCC--CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 34445556678998642 22356778888897 87777632 346778899999999955566666664
No 203
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.12 E-value=55 Score=21.66 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=40.1
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCc-eEEecC---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPI-MSLKFG---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i-~~~~~g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||+| ..+..+ +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 21 ~l~V~nL~~~--~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 21 DVYVGNLPRD--ARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEEEECCCTT--CCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEeCCCCc--CcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4568888632 2245678888999987 333222 4566778899999988865 566666654
No 204
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=48.65 E-value=12 Score=25.41 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=41.7
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||+|..+++. +.-.|-..+++.+..++. ++..+.+++
T Consensus 11 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 11 TVFVGGIDVR--MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 4568888642 2245677888999999888763 234567779999999987 666666664
No 205
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=48.32 E-value=59 Score=21.78 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHh-CCccccc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
|..--+|||++.- -....+.++..+||+|..+++-. .-.|-..+++.|..++.. ++..+.+
T Consensus 14 ~~~~l~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 14 RDRKLFVGMLNKQ--QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 3345678998642 23456788889999998887742 345777899999998863 4444444
No 206
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=48.09 E-value=66 Score=23.53 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=45.7
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEec------CC---eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF------GQ---VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~------g~---~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
|..--+|||++.- -....+.++..+||+|..+.+ |. .-.|-..+++.|..++.. ++..+.+++
T Consensus 38 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 38 KSCTLYVGNLSFY--TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp TCCEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3446678988642 234568888999999998887 21 346778999999999985 566666665
No 207
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=47.19 E-value=70 Score=22.30 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=42.5
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+++- +.-.|-..+.+.++.++. -++..+.+|+
T Consensus 37 ~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 37 KLLVSNLDFG--VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEEEESCCSS--CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4568887532 2245678888999999888773 245677889999999887 3555666664
No 208
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=47.00 E-value=53 Score=24.13 Aligned_cols=63 Identities=10% Similarity=0.211 Sum_probs=42.6
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+..--++||++.- -....+.+...+||+|..+.+-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 93 ~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 93 GAHKLFIGGLPNY--LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTTCEEEECCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCCc--CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 3445678888642 23456788889999998877632 245667789999888875 555555553
No 209
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=46.91 E-value=43 Score=29.84 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=44.5
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--+||||..- .....+.++..+||+|..+++. +.-+|...+++.|..++.. ++..+.+++
T Consensus 103 ~~lfV~nL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 103 KTLFVARVNYD--TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 45678998642 2235677888999999888873 2457788899999999865 566677665
No 210
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=46.24 E-value=32 Score=25.16 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=40.8
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHH-HhCCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEIL-QNQDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL-~~~~~~f~~Rp 102 (298)
++||++.- -....+.++.++||+|..+++- +.-.|-..+++.+.+++ .-++..+.+|+
T Consensus 4 ~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 4 YVGNLDKA--ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEETT--CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCCc--CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 56777532 2245678888999999888873 24567788999999998 44555566554
No 211
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.84 E-value=30 Score=23.77 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCce--------EEecCC---------eeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIM--------SLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~--------~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
.--+|||++.- -....+.++..+||.|. .+++-. .-.|-..+++.|..++.. ++..+.+|
T Consensus 16 ~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 16 SAIYVQGLNDS--VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CEEEEECCCTT--CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEcCCCCC--CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 35678988632 23456788889999986 344432 347778999999999974 56667666
Q ss_pred C
Q 040285 102 T 102 (298)
Q Consensus 102 p 102 (298)
+
T Consensus 94 ~ 94 (113)
T 2cpe_A 94 K 94 (113)
T ss_dssp E
T ss_pred E
Confidence 4
No 212
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.53 E-value=31 Score=26.19 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=43.4
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||+|..+.+.. .-.|-..+++.|..++...+..+.+|+
T Consensus 106 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 106 KIFVGGIKED--TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEEEECCTTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred eEEEeCCCCC--CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 3567887542 23456788889999998877642 246778899999999987776777664
No 213
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=45.34 E-value=33 Score=24.32 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCCCceecccCCC---CCCchHHHHHHHHHhCCceEEecCC-------------eeEEEecCHHHHHHHHHh-CCccccc
Q 040285 38 PTPYPVIGNLLEL---GDKPHKSLAKLAKIHGPIMSLKFGQ-------------VTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 38 P~~~PilGnl~~l---~~~~~~~~~~~~~~yG~i~~~~~g~-------------~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
|...-+|.|+..- ..+....+.+...+||+|..+++-. .-.|-..+++.|..++.. ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5567788888643 2345567778888999999887632 235667788888877654 5667777
Q ss_pred cC
Q 040285 101 RT 102 (298)
Q Consensus 101 Rp 102 (298)
|+
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 75
No 214
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=45.30 E-value=37 Score=23.53 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=40.0
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
-+|||+..- -....+.++..+||+|..+++-. .=.|-..+++.++.++.. ++..+.+|
T Consensus 43 l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 43 LFIYHLPQE--FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp EEEECSCTT--CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457887542 22456788889999998888742 346778899999999875 34444444
No 215
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=44.87 E-value=95 Score=23.51 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=40.9
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+|||+..- -....+.++..+||+|..+.+- +.-.|...+++.|..++.. ++..+.+|+
T Consensus 92 ~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 92 LVSNLDFG--VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp EEECCCSC--CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 46666432 2345688888999999888873 2457788899999999873 455566664
No 216
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=44.68 E-value=64 Score=23.51 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=42.7
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||+|..+++-. .-.|-..+++.++.++. -++..+.+|+
T Consensus 5 ~l~v~nlp~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 5 NLIVNYLPQD--MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp EEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 3467887642 23456888899999998887642 45677889999999986 3555666654
No 217
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=44.07 E-value=36 Score=22.53 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=39.0
Q ss_pred eecccCCCCCCchHHHHHHHHHhC-CceEEecCC---------eeEEEecCHHHHHHHHHhC--CccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHG-PIMSLKFGQ---------VTTVVFSSAAMAKEILQNQ--DTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g~---------~~~vvv~~~~~~~evL~~~--~~~f~~Rp 102 (298)
+||||+.- -.-..+.++..+|| +|-.+++.. .=.|-..+++.|..++... +..+.+|+
T Consensus 5 ~v~nLp~~--~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 5 MLRMLPQA--ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp EEETCCSS--CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 56777542 22457888889999 787776632 2457789999999998643 23455554
No 218
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.85 E-value=26 Score=23.62 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=42.8
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||+..- -....+.++..+||+|..+++-. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 15 ~~~l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 15 NATIRVTNLSED--TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp SEEEEEESCCTT--CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 345678988642 22356777888999998887742 346778899999999974 444555553
No 219
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=43.76 E-value=59 Score=24.71 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=42.7
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
++||++.- .-....+.++..+||+|..+++- +.-.|-..+++.+..++. -++..+.+|+
T Consensus 7 ~v~nlp~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSS-SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 57777641 11235678888999999998875 345788889999999886 4566677765
No 220
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=42.84 E-value=35 Score=24.81 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=40.5
Q ss_pred CCCCCC--CceecccCCCCCCchHHHHHHHHHhCCceEEecCC-----eeEEEecCHHHHHHHHHh-CCccccc
Q 040285 35 PPGPTP--YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ-----VTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 35 pPgP~~--~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-----~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
+++|.. +-++||+.. .--...+.++..+||.|-.+.+.. +-.|-..+++.|+.++.. ++..+-+
T Consensus 22 ~~~ps~VL~I~V~NL~~--~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ---CCSEEEEEEESCCS--CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred cCCCCceEEEEECCCCC--CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 444444 456999853 223456888999999998887743 256778888888777653 3444433
No 221
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.03 E-value=45 Score=22.61 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 55 HKSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
...+.+....||.+..+++ ..+-.|-..|.+.|..++.-.+..+.+|.
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred HHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 3556677788999999886 45667778899999999887777777664
No 222
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=41.57 E-value=62 Score=21.95 Aligned_cols=63 Identities=8% Similarity=-0.078 Sum_probs=42.2
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCC---ceEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGP---IMSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~---i~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
+...-++||+..-. -...+.++..+||. |..+++. +.-.|-..+++.++.++..++..+.+|+
T Consensus 10 ~~~~l~V~nLp~~~--te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 10 DVFLIRAQGLPWSC--TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp SCCEEEEECCCSSC--CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred CccEEEEeCCCCCC--CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 33456789986432 23457777888887 6666653 2457788899999999986555555553
No 223
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=41.48 E-value=77 Score=21.19 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.7
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~ 93 (298)
..--++||+..- -....+.++..+||+|..+++.. .-.|-..+++.+..++..
T Consensus 13 ~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 13 AIKLFIGQIPRN--LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp CEEEEEESCCTT--CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345678888642 23456888899999999888743 346777899999988863
No 224
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=40.49 E-value=59 Score=23.31 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=43.5
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCce--EEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIM--SLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~--~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
+...-++|||+.- -.-..+.++..+| .+. .+++. +.-.|-..+++.++.++...+..+.+|+
T Consensus 41 ~~~~lfVgnLp~~--~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 41 NDGFVRLRGLPFG--CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp SCCEEEEECCCTT--CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 3446678998643 2235677788888 566 66653 3567888999999999987776666665
No 225
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=40.28 E-value=38 Score=27.78 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC-------CeeEEEecCHHHHHHHHHhCCccccccCc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG-------QVTTVVFSSAAMAKEILQNQDTSFCNRTI 103 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvv~~~~~~~evL~~~~~~f~~Rp~ 103 (298)
+..--++||++.- -....+.++..+||+|..+++- +.=.|-..+++.|..++..++..+.+|+.
T Consensus 40 ~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 110 (292)
T 2ghp_A 40 ELTTVLVKNLPKS--YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEI 110 (292)
T ss_dssp --CEEEEEEECTT--CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEE
Confidence 3456778998642 2345688888999999887762 35577889999999999766777777753
No 226
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.23 E-value=58 Score=22.25 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCceEEec-CCeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 56 KSLAKLAKIHGPIMSLKF-GQVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 56 ~~~~~~~~~yG~i~~~~~-g~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
..+.+....||.+..+++ ..+-+|...|.+.|..++.-.+..+.+|.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred HHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 456677778999888886 55677777899999999987777766663
No 227
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=40.16 E-value=28 Score=24.01 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhCCceEEecCCee-EEEecCHHHHHHHHH--hCCcccc
Q 040285 55 HKSLAKLAKIHGPIMSLKFGQVT-TVVFSSAAMAKEILQ--NQDTSFC 99 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~-~vvv~~~~~~~evL~--~~~~~f~ 99 (298)
...+.++.+.||.+.=-|+..+. .|++++++.+++++. ++...|.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~ 76 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYR 76 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSE
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceE
Confidence 46788889999988888887755 458899999999997 3344443
No 228
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.09 E-value=32 Score=24.58 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCc----eEEec-----C---CeeEEEecCHHHHHHHHHhCCcccccc
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPI----MSLKF-----G---QVTTVVFSSAAMAKEILQNQDTSFCNR 101 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i----~~~~~-----g---~~~~vvv~~~~~~~evL~~~~~~f~~R 101 (298)
...-++|||+.- -....+.++..+||+| -.+++ | +.-.|-..+++.++.++.+++..+.+|
T Consensus 23 ~~~v~V~nLp~~--~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 23 QVIVRMRGLPFT--ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp CCEEEECSCCTT--CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 345678888642 2345688889999975 23333 2 245778889999999998765555544
No 229
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.83 E-value=96 Score=21.78 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=40.1
Q ss_pred CCCCCcee--cccCCCCCCchHHHHHHHHHhCCceEEecCC---eeEEEecCHHHHHHHHHh
Q 040285 37 GPTPYPVI--GNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---VTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 37 gP~~~Pil--Gnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvv~~~~~~~evL~~ 93 (298)
.|..--++ ||+.. .-.-..+.+...+||.|-.+.+.. .=.|-..+++.|++++..
T Consensus 23 ~pt~~L~V~Ng~L~~--~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 23 YATQSLVVANGGLGN--GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SCCSEEEEETCTGGG--TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34556788 66753 223467888999999999888742 556777899999988875
No 230
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.67 E-value=39 Score=22.98 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
+...-++|||+.- -....+.++..+||.+ .+++-. .-.|-..+++.++.++..+...+.+|+
T Consensus 14 ~~~~l~V~nLp~~--~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (102)
T 1wez_A 14 TGHCVHMRGLPYR--ATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY 83 (102)
T ss_dssp SSCEEEEESCCTT--CCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 3345678888643 2245677778889954 666521 356777899999999977777777775
No 231
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.45 E-value=54 Score=22.53 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=46.1
Q ss_pred CCCCCCCceecccCCCC---CCc------hHHHHHHHHHhCCceEEecC-----CeeEEEecCHHHHHHHHHh-CCcccc
Q 040285 35 PPGPTPYPVIGNLLELG---DKP------HKSLAKLAKIHGPIMSLKFG-----QVTTVVFSSAAMAKEILQN-QDTSFC 99 (298)
Q Consensus 35 pPgP~~~PilGnl~~l~---~~~------~~~~~~~~~~yG~i~~~~~g-----~~~~vvv~~~~~~~evL~~-~~~~f~ 99 (298)
.|.|...-+|.|+..-. .++ -..+.+...+||+|..+.+- +.-.|-..+++.|..++.. ++..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45566677888885432 111 24677788899999888762 3556777889999988854 455566
Q ss_pred ccC
Q 040285 100 NRT 102 (298)
Q Consensus 100 ~Rp 102 (298)
+|+
T Consensus 91 gr~ 93 (112)
T 2dit_A 91 GRQ 93 (112)
T ss_dssp TEE
T ss_pred CcE
Confidence 665
No 232
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.99 E-value=26 Score=24.71 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCCceecccCCCCCCchHHHHHHHHHhCCce---EEec---C---CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 39 TPYPVIGNLLELGDKPHKSLAKLAKIHGPIM---SLKF---G---QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~---~~~~---g---~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
..--++|||+.- --...+.++..+||+|. .+.. | +.-.|-..+++.++.++..++..+.+|+
T Consensus 25 ~~~l~V~nLp~~--~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 25 GFCVYLKGLPFE--AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CCEEEEECCCTT--CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred CcEEEEeCCCCC--CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 345678888642 22356777888999753 2321 2 2456777899999999976666665553
No 233
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=38.97 E-value=69 Score=21.84 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=29.4
Q ss_pred HHhCCceEEecCC--------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 63 KIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 63 ~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.+||+|-.+++.. .-.|-..+++.|..++.. ++..|.+|+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 8999999988853 345667789888887763 456666665
No 234
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=38.79 E-value=58 Score=23.76 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=40.0
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHhCCcccccc
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQNQDTSFCNR 101 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~~~~~f~~R 101 (298)
++||++.- -....+.++..+||+|..+++-. .-.|-..+++.+.+++.+ ...+.+|
T Consensus 7 ~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~ 71 (167)
T 2cjk_A 7 FIGGLNWD--TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGK 71 (167)
T ss_dssp EECSCCTT--CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTE
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCe
Confidence 57777532 23456788889999999988743 346788899999999974 3444444
No 235
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.64 E-value=92 Score=21.22 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=44.4
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh---CCccccccCc
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN---QDTSFCNRTI 103 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~---~~~~f~~Rp~ 103 (298)
|...-++||+.. .-....+.++..+||.|..+.+. +.=.|-..+.+.|..++.. ....+.+|+.
T Consensus 14 p~~~l~V~nLp~--~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 14 VSPVVHVRGLCE--SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCSEEEEESCCS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 334677899864 22345688899999999888864 3566777889988888763 2334666653
No 236
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=37.26 E-value=98 Score=21.14 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=40.3
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~ 93 (298)
|...-++||++.- ---..+.++..+||.|-.+.+. +.=.|-..+.+.|..++..
T Consensus 20 ps~~l~V~NLp~~--~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDG--VVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCC--CCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 4456789999742 2235678889999999888763 4677788899999888764
No 237
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=36.25 E-value=53 Score=26.22 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=40.9
Q ss_pred ceecccCCCCCCchHHHHHHHHHhC--CceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHG--PIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG--~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
-+||||..- -....+.++..+|| .|..+++-. .=.|...+.+.++.++.. ++..+.+|+
T Consensus 71 lfVgnL~~~--~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 71 LYIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred EEEeCCCCC--CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 478888542 22456888889999 898887632 247788899999999864 344455543
No 238
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=35.65 E-value=90 Score=21.28 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=43.1
Q ss_pred CCCCceecccCCCC--CC------chHHHHHHHHHhCCceEEecC-----------CeeEEEecCHHHHHHHHHh-CCcc
Q 040285 38 PTPYPVIGNLLELG--DK------PHKSLAKLAKIHGPIMSLKFG-----------QVTTVVFSSAAMAKEILQN-QDTS 97 (298)
Q Consensus 38 P~~~PilGnl~~l~--~~------~~~~~~~~~~~yG~i~~~~~g-----------~~~~vvv~~~~~~~evL~~-~~~~ 97 (298)
|...-+|-|+..-. .+ ....+.+...+||+|..+++- +.-.|-..+++.|..++.. ++..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 44566677775431 21 224667778899999999874 2336778889888877643 4666
Q ss_pred ccccC
Q 040285 98 FCNRT 102 (298)
Q Consensus 98 f~~Rp 102 (298)
|.+|+
T Consensus 84 f~GR~ 88 (105)
T 3v4m_A 84 FANRV 88 (105)
T ss_dssp ETTEE
T ss_pred eCCCE
Confidence 77775
No 239
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.38 E-value=83 Score=20.34 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=41.9
Q ss_pred CCCCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 38 PTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 38 P~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
+..--++||++.- -....+.++..+| ++..+++.. .-.|-..+++.+..++.-++..+.+|+
T Consensus 9 ~~~~l~v~nLp~~--~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~ 78 (91)
T 2dgw_A 9 TCHTVKLRGAPFN--VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY 78 (91)
T ss_dssp CCCEEEEECCCSS--CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE
T ss_pred CccEEEEECCCCC--CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE
Confidence 3345678888642 2235577777888 777766521 346777899999999986666666664
No 240
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=35.23 E-value=65 Score=25.04 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 37 GPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 37 gP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.|..--+||||..- ---..+.++..+||+|..+++- +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 13 ~p~~tlfVgnLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPD--VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCC--CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 34455689998642 2245678888999999888763 1347888999999998865 344444443
No 241
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=35.13 E-value=80 Score=25.61 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=44.0
Q ss_pred CCCceecccCCC-C-CCchHHHHHHHHHhCCceEEecCC------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 39 TPYPVIGNLLEL-G-DKPHKSLAKLAKIHGPIMSLKFGQ------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 39 ~~~PilGnl~~l-~-~~~~~~~~~~~~~yG~i~~~~~g~------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
..--++||+..- . ....+.+.++..+||+|..+++-. .=.|-..+++.+..++.. ++..+.+|+
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 346679998753 2 222233668899999999888542 567788899999998843 455566654
No 242
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=35.09 E-value=69 Score=24.89 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=41.9
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC-------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ-------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+++-. .=.|-..+++.|..++.+ ++..+.+|+
T Consensus 105 ~l~v~nl~~~--~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 105 NIFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceECCcccc--cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 3568887542 22457888889999998887631 236777899999999875 455555553
No 243
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=34.83 E-value=25 Score=23.21 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=38.9
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---------CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---------QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||.|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 17 VIKVQNMPFT--VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEEEECCCTT--CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4568888642 2345677888899976432221 2346677899999999874 555566554
No 244
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=34.81 E-value=51 Score=24.06 Aligned_cols=60 Identities=8% Similarity=0.044 Sum_probs=43.3
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHhCCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
..-++|||+.- -....+.++..+|| +..+++.. .-.|-..+++.++.++..++..+.+|+
T Consensus 47 ~~lfV~nLp~~--~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 47 HCVHMRGLPYK--ATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp CCEECCSCCTT--CCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 35578888642 23456888889999 55777642 457788899999999966677777775
No 245
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=34.78 E-value=85 Score=24.40 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=44.0
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++|||... .-....+.++..+||+|..+++. +.=.|-..+++.|..++.. ++..+.+|+
T Consensus 6 ~l~V~nL~~~-~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 6 VLMVYGLDQS-KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp EEEEECCCTT-TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCcc-cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 4578998721 11234678888999999999874 4677888999999988863 456666665
No 246
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=34.66 E-value=72 Score=24.46 Aligned_cols=60 Identities=7% Similarity=0.101 Sum_probs=42.4
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||+|..+++.. .=.|-..+++.|..++.. ++..+.+|+
T Consensus 127 ~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 127 RIYVASVHQD--LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEEEECCCTT--CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEEeCCCCc--CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 4567777532 23467788889999998887742 236777899999998874 566676665
No 247
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=33.51 E-value=22 Score=24.67 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhCCceEEecCCee-EEEecCHHHHHHHHHh
Q 040285 55 HKSLAKLAKIHGPIMSLKFGQVT-TVVFSSAAMAKEILQN 93 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~-~vvv~~~~~~~evL~~ 93 (298)
...+.++...||.+.=-|+..+. .|++++++.|++++..
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 45677888899987777887654 5588999999999973
No 248
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.24 E-value=78 Score=22.59 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=37.7
Q ss_pred eecccCCCCCCchHHHHHHHHHhCCceEEecC---C-eeEEEecCHHHHHHHHHh-CCccccc
Q 040285 43 VIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---Q-VTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 43 ilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~-~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
++||+.. .--...+.++..+||.|-.+++. + .=.|-..+++.|..++.. ++..+.+
T Consensus 29 ~V~NL~~--~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 29 SIQNPLY--PITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEESCCS--CCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEcCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 3788753 22245788899999998777653 2 366777788888777763 4555544
No 249
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=32.54 E-value=31 Score=18.00 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 040285 11 LFSWILVVALNYFSRGFKS 29 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (298)
++++.+..++.||+..+..
T Consensus 11 visGcivalF~hWL~~r~~ 29 (30)
T 4b19_A 11 VISGCAIAFFSYWLSRRNT 29 (30)
T ss_dssp THHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 5666667778888886543
No 250
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=31.10 E-value=1.1e+02 Score=22.30 Aligned_cols=59 Identities=12% Similarity=0.262 Sum_probs=40.1
Q ss_pred ceecccCCCCCCchHHHHHHHHHh----C-------CceEEecC---CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIH----G-------PIMSLKFG---QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~y----G-------~i~~~~~g---~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
-++||++.- -....+.++..+| | ++...+++ +.=.|-..+++.|..++.-++..+.+|+
T Consensus 7 l~V~nLp~~--~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 7 LYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEEcCCCcc--cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 357887642 1234455666666 7 77777775 4567788899999999965666666664
No 251
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.59 E-value=58 Score=21.01 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=35.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHH
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEIL 91 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL 91 (298)
--++||++.- -....+.++..+||+|..+++- +.-.|-..+++.++++.
T Consensus 7 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 7 GVFVGRCTGD--MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEEEESCCSS--SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 4568888642 2345677888999999998884 35677888999987643
No 252
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=30.48 E-value=68 Score=24.19 Aligned_cols=60 Identities=10% Similarity=0.233 Sum_probs=40.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||+|..+++.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 116 ~l~v~nl~~~--~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 116 KLFIGGLPNY--LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEEEECCCTT--CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4557777542 23456788889999998877642 235667888888888874 555565553
No 253
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.69 E-value=83 Score=21.70 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=41.7
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.-++|||+.- --...+.++...| .|..+++. +.-.|-..+++.+..++..++..+.+|.
T Consensus 18 ~v~V~nLp~~--~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 84 (109)
T 2dnn_A 18 YVSVHGMPFS--AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRY 84 (109)
T ss_dssp EEEEECCCSS--CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 4668888642 2234677777788 67777663 3567888999999999977676666664
No 254
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=29.48 E-value=1.4e+02 Score=21.61 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccc
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCN 100 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~ 100 (298)
.--++||++.- -....+.++..+||+|..+.+-. .-.|-..+++.|..++.. ++..+.+
T Consensus 90 ~~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 90 TNLYVTNLPRT--ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CEEEEESCCTT--CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCEEEeCCCCC--CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 45667887642 23456788889999998877632 236667899999988873 3444433
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.21 E-value=37 Score=23.76 Aligned_cols=60 Identities=13% Similarity=0.017 Sum_probs=41.7
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCC---ceEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGP---IMSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~---i~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.-++|||..- --...+.++..+||. |..+++- +.-.|-..+++.++.++..++..+.+|+
T Consensus 19 ~l~V~nLp~~--~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 19 VVKLRGLPWS--CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp EEEEESCCTT--CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 4568988643 223567788888997 5555542 2457788999999999987666666664
No 256
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=29.05 E-value=1.3e+02 Score=21.65 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=40.3
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCcccccc
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNR 101 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~R 101 (298)
--++||++.- -....+.+...+||++..+.+.. .-.|-..+++.|..++.. ++..+.+|
T Consensus 90 ~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 90 NLYVSGLPKT--MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cEEECCCCCc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 4567887542 23456888889999998877632 235667899999998874 45555554
No 257
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=27.50 E-value=44 Score=24.29 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=40.8
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCC---ceEEecC--------CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGP---IMSLKFG--------QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~---i~~~~~g--------~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
.-++|||..- -.-..+.++..+||. |-.+++- +.-.|-..+++.++.++..++..+.+|+
T Consensus 46 ~lfVgnLp~~--~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 46 VVKLRGLPWS--CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp EEEEESCCTT--CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 4578998643 224567788889998 5444442 2457888999999999975555565553
No 258
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=27.43 E-value=1.3e+02 Score=21.59 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=41.6
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC---------eeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ---------VTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
.--++||++.- -....+.+...+||+|..+.+.. .=.|-..+++.|..++.. ++..+.+|+
T Consensus 88 ~~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 88 FNLFVGDLNVN--VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp EEEEEESCCTT--CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ceEEECCCCCC--CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 35668887642 12456778889999988877631 245677899999999873 455555554
No 259
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=27.35 E-value=1.9e+02 Score=23.27 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=35.1
Q ss_pred ceecccCCCCCCchHHHHHHHHHhCCceEEecC----CeeEEEecCHHHHHHHHHh
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG----QVTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~~~~~~~evL~~ 93 (298)
-++||+.. ......+.++..+||+|..+++. +.=.|-..+.+.+..++..
T Consensus 210 l~v~nl~~--~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 210 LFLTNLPE--ETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred EEEeCCCC--cCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHH
Confidence 44666643 12345778888999999888874 2456677889999888864
No 260
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=26.54 E-value=90 Score=25.14 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=43.5
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHH-hCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQ-NQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~-~~~~~f~~Rp 102 (298)
--++||++.- -.-..+.++..+||+|..++++ +.-.|-..+++.|..++. -++..+.+|+
T Consensus 24 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 24 RLFVGNLPTD--ITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp EEEEESCCTT--CCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 3478888642 1245677888999999998886 356777889999999886 3455666664
No 261
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=26.11 E-value=1.1e+02 Score=20.07 Aligned_cols=60 Identities=20% Similarity=0.086 Sum_probs=38.6
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceE-----EecC---CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMS-----LKFG---QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~-----~~~g---~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
--++||+..- -....+.++..+||++.. -.-| +.-.|-..+++.+..++.-++..+.+|+
T Consensus 19 ~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 86 (101)
T 1fj7_A 19 NLFIGNLNPN--KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 86 (101)
T ss_dssp EEEEECCCTT--SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcE
Confidence 4568888642 123456777778885433 1112 3566788999999999975566666654
No 262
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=25.78 E-value=30 Score=17.42 Aligned_cols=11 Identities=45% Similarity=0.875 Sum_probs=7.4
Q ss_pred CCCCCCCCcee
Q 040285 34 LPPGPTPYPVI 44 (298)
Q Consensus 34 ~pPgP~~~Pil 44 (298)
.||||++-|-+
T Consensus 4 gppgprgqpgv 14 (31)
T 4gyx_A 4 GPPGPRGQPGV 14 (31)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCCCcc
Confidence 46777777743
No 263
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=25.63 E-value=1.7e+02 Score=25.09 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=43.9
Q ss_pred CCCCCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEecC---CeeEEEecCHHHHHHHHHh
Q 040285 33 RLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFG---QVTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 33 ~~pPgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~~~~~~~evL~~ 93 (298)
+.+..|..--++||+-.-..---+.+.+...+||.|-.+.+. +.=.|-..+.+.|++++..
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 344566678889996221122346788889999999998872 4557777899999998875
No 264
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.52 E-value=83 Score=20.84 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCCCCCceecccCCCCCCchHHHHHHHHHhCCceEEec-----CCeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 36 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF-----GQVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 36 PgP~~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-----g~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
+.|..--++||++.- -....+.++..+||+|.-... -+.-.|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSYS--ATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp SCCCSEEEEESCCTT--CCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 445556778998642 224567777788998733322 12456778899999999873 455565554
No 265
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.82 E-value=67 Score=16.23 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q 040285 7 VPWLLFSWILVVA 19 (298)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (298)
++|-+++++|+++
T Consensus 4 tiweviaglvall 16 (32)
T 2lx0_A 4 TIWEVIAGLVALL 16 (32)
T ss_dssp SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3455555555443
No 266
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=24.69 E-value=1.3e+02 Score=21.77 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=37.4
Q ss_pred CCceecccCCCCCCchHHHHHHHHHhCCceEEecCC--------eeEEEecCHHHHHHHHHh
Q 040285 40 PYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQ--------VTTVVFSSAAMAKEILQN 93 (298)
Q Consensus 40 ~~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvv~~~~~~~evL~~ 93 (298)
.--++||++.- -....+.+...+||+|..+.+-. .=.|-..+++.|..++..
T Consensus 96 ~~l~v~nl~~~--~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 96 RKLFIGMISKK--CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp SEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CeEEEcCCCCc--CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 34567777542 23456788889999998887632 246788899999998864
No 267
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=22.53 E-value=1.4e+02 Score=22.23 Aligned_cols=59 Identities=12% Similarity=0.262 Sum_probs=40.0
Q ss_pred ceecccCCCCCCchHHHHHHHHHh----C-------CceEEecC---CeeEEEecCHHHHHHHHHhCCccccccC
Q 040285 42 PVIGNLLELGDKPHKSLAKLAKIH----G-------PIMSLKFG---QVTTVVFSSAAMAKEILQNQDTSFCNRT 102 (298)
Q Consensus 42 PilGnl~~l~~~~~~~~~~~~~~y----G-------~i~~~~~g---~~~~vvv~~~~~~~evL~~~~~~f~~Rp 102 (298)
-++||++.- -....+.++..+| | ++...++| +.=.|-..+++.|..++.-++..+.+|+
T Consensus 7 l~V~nLp~~--~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~ 79 (198)
T 2yh0_A 7 LYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (198)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred EEEcCCCCC--CCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence 367887642 1234455666666 6 77777775 4667888999999999955666666664
No 268
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.21 E-value=57 Score=21.50 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=38.1
Q ss_pred CceecccCCCCCCchHHHHHHHHHhCCceEEec------C---CeeEEEecCHHHHHHHHHh-CCccccccC
Q 040285 41 YPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKF------G---QVTTVVFSSAAMAKEILQN-QDTSFCNRT 102 (298)
Q Consensus 41 ~PilGnl~~l~~~~~~~~~~~~~~yG~i~~~~~------g---~~~~vvv~~~~~~~evL~~-~~~~f~~Rp 102 (298)
--++||++.- -....+.++..+||+|..+.+ | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~v~nLp~~--~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 17 IIKVQNMPFT--VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp EEEEESCCTT--CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3568888632 234567788889997642211 1 2356778899999999964 344555553
Done!