BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040287
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
          Cys2his2 Zinc Finger Induces Structural Rearrangements
          Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
          From Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 35.4 bits (80), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 17/26 (65%)

Query: 73 PRTHECSVCGLEFAIGQALGGHMRRH 98
          PR++ CS C  EF   QALGGHM  H
Sbjct: 4  PRSYTCSFCKREFRSAQALGGHMNVH 29



 Score = 29.6 bits (65), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 27 RVFECKTCNRQFPSFQALGGHRASH 51
          R + C  C R+F S QALGGH   H
Sbjct: 5  RSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
           Sulfolobus Solfataricus
          Length = 195

 Score = 30.8 bits (68), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 74  RTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPL 120
           RT    VC    AIG A G  +RR R V  HG  K+S + L + +PL
Sbjct: 77  RTPILGVCLGHQAIGYAFGAKIRRARKV-FHG--KISNIILVNNSPL 120


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 29.6 bits (65), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 29 FECKTCNRQFPSFQALGGHRASHKKPR-LXXXXXXXXXXQQSPAKPRT--------HECS 79
          F+CK C + F     L  H   H   R            Q+S  K  T        H+C 
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 80 VCGLEFAIGQALGGHMRRH 98
          VCG  F+    L  H R+H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 74  RTHECSVCGLEFAIGQALGGHMRRHRAV 101
           R + C VCG +F +   L GHM+ H  +
Sbjct: 36  RPYGCGVCGKKFKMKHHLVGHMKIHTGI 63


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 26.6 bits (57), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 74 RTHECSVCGLEFAIGQALGGHMRRH 98
          + +ECSVCG  F+  Q+L  H R H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 26.2 bits (56), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 74  RTHECSVCGLEFAIGQALGGHMRRHRAVALHG 105
           + + C+VCG  F +   L  H+R H    L G
Sbjct: 11  KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG 42


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 76  HECSVCGLEFAIGQALGGHMRRHRAV 101
           H+C VCG  F+    L  HMR H  V
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGV 34


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,314,190
Number of Sequences: 62578
Number of extensions: 137213
Number of successful extensions: 551
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 37
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)