BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040288
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q564K3|CND2_ARATH Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1
SV=1
Length = 671
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 300/435 (68%), Gaps = 39/435 (8%)
Query: 1 MSEALSPRQR---GTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKAT-ST 56
M E+L+P + + + R+ +PT FFLGSN+D+LEREQARAARAAA RRR +
Sbjct: 1 MDESLTPNPKQKPASTTTRIQAPTSP--FFLGSNDDRLEREQARAARAAASRRRSVIFAR 58
Query: 57 SSSPLPE-DPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE 115
S P E DPC ++QI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE + E
Sbjct: 59 GSQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTE 118
Query: 116 TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAI 175
TNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGITRAG +D + A V+N T+
Sbjct: 119 TNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHEDAAGAVENATNQ- 177
Query: 176 HPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGV 235
K+ E+KISPLSTL+ SF+ NVKKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLGV
Sbjct: 178 --KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGV 235
Query: 236 YGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREII 295
YGGC+VLFDS E+PG+ S + +++ S+ ID+SF KE + +MV +M K EI P+LR II
Sbjct: 236 YGGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAII 295
Query: 296 CQFDEDNQR-SQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWG 354
QFDE+NQR S FS G+ D H + ++ +++G ++ FG ++
Sbjct: 296 NQFDEENQRPSDTFSCGQQTTESFD-------ISHGNDASYADDDEGYEN--FGT--SFD 344
Query: 355 YDQEGGTSVEN-GPSGADELGIN----------------DRFEDVTMFLFQGLGFTSKRN 397
Y+ + G EN GP+ A+ + N DR E+V +LF LG +SK+N
Sbjct: 345 YEGQSGDVDENFGPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQN 404
Query: 398 AWAGPDHWKYQKSKG 412
+WAGPDHWKY+K+KG
Sbjct: 405 SWAGPDHWKYRKTKG 419
>sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cnd2 PE=1 SV=1
Length = 742
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 15/218 (6%)
Query: 32 NDQLEREQARAARAAAIRRRKATSTSSSPLPED---PCLSEEQIVELLQNCIKLASENKI 88
N + +RE R++ +I R+ + +SSP P LS + IKLA++NKI
Sbjct: 30 NSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQVPVLSN------FEEWIKLATDNKI 83
Query: 89 NQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVL 147
N NTW LID+ ++ + D E NFQKASCTL+ VKIY+ R+D+V + K+L
Sbjct: 84 NSTNTWNFALIDYFHDM---SLLRDGEDINFQKASCTLDGCVKIYTSRIDSVATETGKLL 140
Query: 148 GGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAF 207
G+ + Q GE+ +N + + K++ +R + TL FE+ KKF++
Sbjct: 141 SGLANDSKVLQQ--TEEGEDAENDDEDLQKKKERKRAQRSVKTLVKDFESIRAKKFELEC 198
Query: 208 AVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDS 245
+ DPL + A FDE GA+GLL+N+L V R++FDS
Sbjct: 199 SFDPLFKKMCADFDEDGAKGLLMNHLCVDQHGRIVFDS 236
>sp|O13067|CND2_XENLA Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1
Length = 699
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/442 (28%), Positives = 197/442 (44%), Gaps = 70/442 (15%)
Query: 5 LSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSPLPED 64
LSP R + +PT SN+D+ ER+ R +R ++ A S +++ P
Sbjct: 22 LSPATRPQPISAAATPTL---LNFTSNDDERERKLRRMSRVIDLQLSNANSPATAISPAQ 78
Query: 65 -----------PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGD 113
P L+ QI + CIKL+ ENKI N + L LID++ +I+K + D
Sbjct: 79 SRGADTPTSLLPKLNNTQISDHYSTCIKLSQENKITTKNAFGLHLIDYMGDILKHK---D 135
Query: 114 AE-TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQ----EDDQETITAGENV 168
+E TNF+ A+ TL+A KIY+VRVDAVHA YKVLGG+ + Q ++QET T +
Sbjct: 136 SELTNFKVAAGTLDASAKIYAVRVDAVHADVYKVLGGLGKESQATEDTENQETDTGPQ-- 193
Query: 169 DNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGL 228
D R + PKR RK S T++ + + N + + +DPL + +A FDE G+
Sbjct: 194 DGRKN---PKR---RKCS-YKTIERNLNSINRSETERKSEIDPLFQKAAASFDEFSTAGV 246
Query: 229 LLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEIS 288
L+ L + L +V + + +D + K L + V K +
Sbjct: 247 FLSTLKCHSYHSELHFDADVKPLSTAEETEPPSPGSMDSTELKSLFLQCVE----KRPLC 302
Query: 289 PTLREI-ICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTK---EETFVGNE----- 339
P+L Q++ D Q EN+ L +D + E+ FV +E
Sbjct: 303 PSLSGFRFMQWNSDAQ-------NENLSLLMDKFKKSDHVFDINAEVEDDFVESEAPVAD 355
Query: 340 ----------DGLDDSSFGNHK-AWGYDQEGG--TSVENGPSGADELGINDRFEDVTMFL 386
D D F H+ A +++G T + NG G L ++ + + F
Sbjct: 356 EFDADVCEGMDAGDIGEFAEHREACRLERKGAQLTQIGNGDIGTMCLQLSSCPGEYSYFS 415
Query: 387 FQGLGFTSKRNAWAGPDHWKYQ 408
+ + WAGP+HW+++
Sbjct: 416 PRTMSM------WAGPEHWRFR 431
>sp|Q8C156|CND2_MOUSE Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=2 SV=1
Length = 731
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 191/412 (46%), Gaps = 59/412 (14%)
Query: 31 NNDQLEREQARAARA------------AAIRRRKATSTSSSPLPEDPCLSEEQIVELLQN 78
N+D+ ER Q R +R A+ R ST+ S + QI E
Sbjct: 55 NDDEKERMQRRRSRVFDLQFSTDSIHLASPNRNIDVSTTISKF------TNTQITEHYST 108
Query: 79 CIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVD 137
CIKL+SENKI N + L LID +SEI+K + DAE TNF+ A+ TL+A KIY+VRVD
Sbjct: 109 CIKLSSENKITTKNAFGLHLIDFMSEILKQK---DAEPTNFKVAAGTLDASTKIYAVRVD 165
Query: 138 AVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFET 197
AVHA Y+VLGG+ + +E+ +G+ T+ ++K S T++ +
Sbjct: 166 AVHADVYRVLGGLGKDTPPQGEES-HSGDGSTLETERTKKPAKPKKKQS-CKTIEQNLSN 223
Query: 198 FNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYG-GCRVLFDS----------L 246
NV + D AVDP+ +T+A FDE G+ L+ L +LF S L
Sbjct: 224 INVSEADGKCAVDPMFQKTAASFDECSTTGVFLSTLHCQDYRSELLFPSDMQTLSSGEPL 283
Query: 247 EVP--GRCESYSLQNNCSDMI-DISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQ 303
E+P G + L+ + + D L G ++T + ++ ++ +F +++
Sbjct: 284 ELPDLGFVDMTDLEASLQQCVEDRPLCPSLAGFQFTKWDSETH-NESVSALVDKFKKND- 341
Query: 304 RSQIFSL-GENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTS 362
Q+F + E D D G E FV N D D S+ G+H+ + +E
Sbjct: 342 --QVFDINAEAEDDEEDVPDGPLV------EDFVDN-DEPDLSAAGDHEEFRSWKELCQV 392
Query: 363 VENGPSGADELGINDR-FEDVTMFLFQGLG---FTSKRN--AWAGPDHWKYQ 408
N + + + DR + + FL G + S R WAGPDHW+++
Sbjct: 393 QSN---QEEVISLEDRDIQVMCSFLSMKPGEYSYFSPRTMKMWAGPDHWRFR 441
>sp|Q15003|CND2_HUMAN Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3
Length = 741
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 117/439 (26%), Positives = 185/439 (42%), Gaps = 103/439 (23%)
Query: 31 NNDQLEREQARAARAAAIR-----RRKATSTSSSPL---PEDPCLSEEQIVELLQNCIKL 82
N+D+ ER Q R +R ++ R S SS + P + QI E CIKL
Sbjct: 58 NDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKL 117
Query: 83 ASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDAVHA 141
++ENKI N + L LID +SEI+K + D E TNF+ A+ TL+A KIY+VRVDAVHA
Sbjct: 118 STENKITTKNAFGLHLIDFMSEILKQK---DTEPTNFKVAAGTLDASTKIYAVRVDAVHA 174
Query: 142 QAYKVLGGITR--AGQEDDQETITAGENVDNRT-------DAIHPKRDFERKISPLSTLD 192
Y+VLGG+ + E+ + + G + T H R E+ I+ L
Sbjct: 175 DVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNL---- 230
Query: 193 SSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRC 252
NV + D +DP+ +T+A FDE G+ L+ L C+ L P
Sbjct: 231 ------NVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTL----HCQDYRSELLFPSDV 280
Query: 253 ESYSL-------QNNCSDMIDISFAKELIGKMVNDMHAKTEISPTL-------------- 291
++ S + C +M D+ K + + D +I P+L
Sbjct: 281 QTLSTGEPLELPELGCVEMTDL---KAPLQQCAEDR----QICPSLAGFQFTQWDSETHN 333
Query: 292 REIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNE----DGLDDSSF 347
+ D+ + Q+F + +D + C + +G++ D D ++
Sbjct: 334 ESVSALVDKFKKNDQVFDINAEVD---------ESDCGDFPDGSLGDDFDANDEPDHTAV 384
Query: 348 GNH---KAWGYD------QEGGTSVENG------PSGADELGINDRFEDVTMFLFQGLGF 392
G+H ++W QE S+ +G P + + G F TM +
Sbjct: 385 GDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSM------ 438
Query: 393 TSKRNAWAGPDHWKYQKSK 411
WAGPDHW+++ +
Sbjct: 439 ------WAGPDHWRFRPRR 451
>sp|P38170|CND2_YEAST Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRN1 PE=1 SV=3
Length = 754
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 76 LQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVR 135
+ IK+A++NKIN N+W LID+ ++ V G+ NFQKAS TL+ +KIYS R
Sbjct: 31 FEEWIKMATDNKINSRNSWNFALIDYFYDL-DVLKDGENNINFQKASATLDGCIKIYSSR 89
Query: 136 VDAVHAQAYKVLGGITR-----AGQEDDQETIT------------------AGENVDNRT 172
VD+V + K+L G+ + A DD G + N
Sbjct: 90 VDSVTTETGKLLSGLAQRKTNGASNGDDSNGGNGEGLGGDSDEANIEIDPLTGMPISNDP 149
Query: 173 DAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNN 232
D + +R ++ L T FET +K+ D +DPL + FDEGGA+ LLLN
Sbjct: 150 DVNNTRRRVYNRV--LETTLVEFETIKMKELDQELIIDPLFKKALVDFDEGGAKSLLLNT 207
Query: 233 LGVYGGCRVLFDS 245
L + RV+FD+
Sbjct: 208 LNIDNTARVIFDA 220
>sp|P40094|COG3_YEAST Conserved oligomeric Golgi complex subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COG3 PE=1
SV=1
Length = 801
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 236 YGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDM-HAKTEISPTLREI 294
+ G F SL+ GR L+ S I ++ A+EL+ K+VN+M A+TE+ LR +
Sbjct: 622 FSGVEGFFKSLKENGRN---VLKKTKSSSI-LTLARELVPKVVNNMVDARTELISELRNV 677
Query: 295 ICQFDE 300
I F E
Sbjct: 678 IKDFTE 683
>sp|P06786|TOP2_YEAST DNA topoisomerase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP2 PE=1 SV=2
Length = 1428
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 255 YSLQNNCSDMIDISFAKELI---GKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLG 311
+SLQ N D ID++F+K+ + + T + PTL+EI D N+ +FSL
Sbjct: 628 HSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPIS-DFINKELILFSLA 686
Query: 312 ENI 314
+NI
Sbjct: 687 DNI 689
>sp|Q28GV1|CNDH2_XENTR Condensin-2 complex subunit H2 OS=Xenopus tropicalis GN=ncaph2 PE=2
SV=1
Length = 624
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 94 WELKLIDHLSEIIK-VETV------GDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKV 146
WE+ + L E ++ ++ + G NF +A+ ++ IYS +V+ +++ Y+
Sbjct: 22 WEVDVAAQLGEYLEELDQICISFDGGKTTMNFAEAALLIQGSACIYSKKVEYLYSLVYQA 81
Query: 147 LGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVA 206
L I+ + D Q + VD H + D E +S +D ++KK V
Sbjct: 82 LDFISNK-KRDQQPASVGADGVDKDATFAH-RNDEEEFLSLDDIIDPKKTNVDIKKDQVL 139
Query: 207 FAVD--PLS 213
V+ PL+
Sbjct: 140 HVVNIVPLT 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,625,542
Number of Sequences: 539616
Number of extensions: 6783656
Number of successful extensions: 15833
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 15802
Number of HSP's gapped (non-prelim): 31
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)