Query 040288
Match_columns 413
No_of_seqs 167 out of 244
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gpg_A NSP3, non-structural pr 9.7 1.6E+02 0.0056 26.1 2.7 20 70-89 91-110 (168)
2 4h62_V Mediator of RNA polymer 9.3 2.9E+02 0.01 18.1 3.1 20 65-84 7-26 (31)
3 3gqe_A Non-structural protein 8.8 2E+02 0.0068 25.5 2.9 20 70-89 85-104 (168)
4 1dl2_A Class I alpha-1,2-manno 8.0 1.1E+02 0.0037 32.0 0.9 61 92-153 45-111 (511)
5 2e2s_A Agelenin; cystine knot, 7.5 1.2E+02 0.0041 20.9 0.6 10 396-405 10-19 (36)
6 3arc_X Photosystem II PSBX pro 7.2 1.3E+02 0.0044 21.3 0.7 10 287-296 2-11 (39)
7 1hcu_A Alpha-1,2-mannosidase; 7.2 1.5E+02 0.0051 30.9 1.5 59 89-153 49-112 (503)
8 3q71_A Poly [ADP-ribose] polym 7.1 2.5E+02 0.0086 25.9 2.9 20 70-89 131-150 (221)
9 1ug2_A 2610100B20RIK gene prod 7.1 3.2E+02 0.011 22.7 3.1 23 68-90 69-91 (95)
10 2ld7_B Paired amphipathic heli 7.0 1.8E+02 0.0061 22.7 1.5 33 69-106 24-56 (75)
No 1
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=9.72 E-value=1.6e+02 Score=26.07 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 040288 70 EQIVELLQNCIKLASENKIN 89 (413)
Q Consensus 70 ~qi~e~y~~cIKLateNKIn 89 (413)
+.|...|.+|++++.+++|.
T Consensus 91 ~~L~~~y~~~L~~A~~~~~~ 110 (168)
T 3gpg_A 91 RELAAAYREVAKEVTRLGVN 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 56899999999999999975
No 2
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=9.29 E-value=2.9e+02 Score=18.14 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 040288 65 PCLSEEQIVELLQNCIKLAS 84 (413)
Q Consensus 65 ~~ls~~qi~e~y~~cIKLat 84 (413)
..+...||.+++.+||.-.-
T Consensus 7 trfdekqieelldncietfv 26 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 45778999999999997653
No 3
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=8.83 E-value=2e+02 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 040288 70 EQIVELLQNCIKLASENKIN 89 (413)
Q Consensus 70 ~qi~e~y~~cIKLateNKIn 89 (413)
+.|...|.+|++++.+++|.
T Consensus 85 ~~L~~~y~~~L~~a~~~~~~ 104 (168)
T 3gqe_A 85 KQLAEAYESIAKIVNDNNYK 104 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 46889999999999999885
No 4
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=7.96 E-value=1.1e+02 Score=32.02 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=34.2
Q ss_pred cccccchhhHHHHHHhhccc-----CCCccchhhhccccccceeee-eeehhhHHHHHHHHHhhhhhc
Q 040288 92 NTWELKLIDHLSEIIKVETV-----GDAETNFQKASCTLEAGVKIY-SVRVDAVHAQAYKVLGGITRA 153 (413)
Q Consensus 92 NAW~l~LID~m~dll~~~d~-----~~~~tNFQkAS~TLDAsvKIY-s~RVDSVhtetyKvL~gL~r~ 153 (413)
|.|.+.|||-|..|.-..+. .+...-|++|---+.....-- ...| +|..-|.|+||||-.+
T Consensus 45 ~g~G~TlVDSLDTL~IM~~~~~~~~~gl~~Ef~~A~~~V~~~l~F~~d~~V-svFETtIR~LGGLLSA 111 (511)
T 1dl2_A 45 QPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEV-NVFETTIRMLGGLLSA 111 (511)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHTCCCCCSSEE-EHHHHHHHHHHHHHHH
T ss_pred CccceeeeecccceEEeccccccccCCcHHHHHHHHHHHHHhcCCCCCcee-chhheehhhhhhhhhH
Confidence 38999999999998554000 001224666643222110000 0122 5788899999998644
No 5
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=7.49 E-value=1.2e+02 Score=20.91 Aligned_cols=10 Identities=40% Similarity=0.534 Sum_probs=7.5
Q ss_pred cccccCCCcc
Q 040288 396 RNAWAGPDHW 405 (413)
Q Consensus 396 ~n~wagp~hw 405 (413)
-|+|+||--.
T Consensus 10 Cn~~sGPrCC 19 (36)
T 2e2s_A 10 CNALSGPRCC 19 (36)
T ss_dssp CCSSSSCCBC
T ss_pred cccccCCccc
Confidence 4899999643
No 6
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=7.21 E-value=1.3e+02 Score=21.25 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=8.3
Q ss_pred CCcCHHHHHh
Q 040288 287 ISPTLREIIC 296 (413)
Q Consensus 287 IcPSL~~f~~ 296 (413)
++|||++|..
T Consensus 2 mTpSL~nFl~ 11 (39)
T 3arc_X 2 ITPSLKGFFI 11 (39)
T ss_dssp CCHHHHHHHH
T ss_pred cChhHHHHHH
Confidence 6899999873
No 7
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=7.17 E-value=1.5e+02 Score=30.88 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=37.0
Q ss_pred ccccccccchhhHHHHHHhhcccCCCccchhhhccccccceeee-----eeehhhHHHHHHHHHhhhhhc
Q 040288 89 NQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIY-----SVRVDAVHAQAYKVLGGITRA 153 (413)
Q Consensus 89 n~KNAW~l~LID~m~dll~~~d~~~~~tNFQkAS~TLDAsvKIY-----s~RVDSVhtetyKvL~gL~r~ 153 (413)
+.-|-|.+.|||-|..|.-... ..-|++|--.+. ....- ...| +|..-|.|+||||-.+
T Consensus 49 d~~gg~g~TlVDsLDTL~IMgl----~~Ef~~A~~~v~-~l~f~~~~~~~~~V-svFETtIR~LGGLLSA 112 (503)
T 1hcu_A 49 DERNGWGSSAIDGLDTAILMGD----ADIVNTILQYVP-QINFTTTAVANQGS-SVFETNIRYLGGLLSA 112 (503)
T ss_dssp CTTTTSCHHHHHHHHHHHHTTC----HHHHHHHHHHGG-GCCTTCCSSTTCCE-EHHHHHHHHHHHHHHH
T ss_pred CCCCCcceeehhhccchhhcCC----HHHHHHHHHHHH-hCCCCcccccCCcc-chheeehhhHhHHHHH
Confidence 3456799999999999965432 234666654443 11100 1112 5788899999998654
No 8
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=7.12 E-value=2.5e+02 Score=25.94 Aligned_cols=20 Identities=5% Similarity=0.506 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 040288 70 EQIVELLQNCIKLASENKIN 89 (413)
Q Consensus 70 ~qi~e~y~~cIKLateNKIn 89 (413)
+.|...|.+|++++.+++|.
T Consensus 131 ~~L~~~y~~~L~~A~e~~i~ 150 (221)
T 3q71_A 131 KIMEDIIRECMEITESLSLK 150 (221)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 56999999999999999876
No 9
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=7.06 E-value=3.2e+02 Score=22.67 Aligned_cols=23 Identities=4% Similarity=0.053 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHhhccccc
Q 040288 68 SEEQIVELLQNCIKLASENKINQ 90 (413)
Q Consensus 68 s~~qi~e~y~~cIKLateNKIn~ 90 (413)
+..|+.+.|.+-|+|...++-|.
T Consensus 69 s~nqV~~RFq~Lm~Lf~~~~~~~ 91 (95)
T 1ug2_A 69 TPVEVSHRFRELMQLFHTACESG 91 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSC
T ss_pred CHHHHHHHHHHHHHHHHHHhccC
Confidence 78999999999999999887664
No 10
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=7.04 E-value=1.8e+02 Score=22.68 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHH
Q 040288 69 EEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEII 106 (413)
Q Consensus 69 ~~qi~e~y~~cIKLateNKIn~KNAW~l~LID~m~dll 106 (413)
..++-..|-.||+|+++..|..+ .||+...+++
T Consensus 24 ~~~~Y~eFLk~lnlf~q~~Id~~-----eLv~~V~~~l 56 (75)
T 2ld7_B 24 SAEAYENFLRCLVIFNQEVISRA-----ELVQLVSPFL 56 (75)
T ss_dssp SHHHHHHHHHHHHHHHTTCSCHH-----HHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHhhhcCcCHH-----HHHHHHHHHH
Confidence 35778899999999999999876 3444444444
Done!