Query 040288
Match_columns 413
No_of_seqs 167 out of 244
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlka1 g.37.1.1 (A:8-37) Zinc 44.9 2.5 0.00018 26.4 0.3 24 122-145 2-25 (30)
2 d1hcua_ a.102.2.1 (A:) Class I 11.7 42 0.003 32.1 2.0 61 89-153 43-106 (488)
3 d1dl2a_ a.102.2.1 (A:) Class I 11.2 94 0.0068 29.7 4.4 66 88-153 41-111 (511)
4 d1yd9a1 c.50.1.2 (A:6-193) His 9.8 65 0.0048 26.2 2.3 22 68-89 102-123 (188)
5 d1iruj_ d.153.1.4 (J:) Proteas 9.6 84 0.0061 25.5 2.9 36 65-100 155-190 (204)
6 d1ryph_ d.153.1.4 (H:) Proteas 8.7 85 0.0062 25.6 2.6 36 65-100 153-188 (205)
7 d1nxca_ a.102.2.1 (A:) Class I 7.9 54 0.0039 31.0 1.0 54 92-153 60-117 (467)
8 d1irub_ d.153.1.4 (B:) Proteas 7.5 75 0.0054 26.3 1.7 35 65-100 179-213 (233)
9 d2ns0a1 a.4.5.76 (A:1-85) Hypo 7.2 1E+02 0.0075 23.1 2.2 25 269-293 7-31 (85)
10 d1spva_ c.50.1.2 (A:) Hypothet 6.7 1.6E+02 0.012 23.1 3.3 24 66-89 89-112 (172)
No 1
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.91 E-value=2.5 Score=26.42 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.0
Q ss_pred ccccccceeeeeeehhhHHHHHHH
Q 040288 122 SCTLEAGVKIYSVRVDAVHAQAYK 145 (413)
Q Consensus 122 S~TLDAsvKIYs~RVDSVhtetyK 145 (413)
+|-.+||-||+|.|-=--|..-|+
T Consensus 2 ~cdf~gc~kifsnrqylnhh~kyq 25 (30)
T d2dlka1 2 PCDFPGCGRIFSNRQYLNHHKKYQ 25 (30)
T ss_dssp ECSSTTTCCEESSHHHHHHHHHHG
T ss_pred CCCCCCchhhhccHHHHHhHHHHH
Confidence 578899999999997555544443
No 2
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]}
Probab=11.73 E-value=42 Score=32.14 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=36.4
Q ss_pred ccccccccchhhHHHHHHhhcccCCCccchhhhccccccceeeeeeehh---hHHHHHHHHHhhhhhc
Q 040288 89 NQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVD---AVHAQAYKVLGGITRA 153 (413)
Q Consensus 89 n~KNAW~l~LID~m~dll~~~d~~~~~tNFQkAS~TLDAsvKIYs~RVD---SVhtetyKvL~gL~r~ 153 (413)
+.-+-|.+.|||-|..|.-.... .-|+.|---+.-.---....+| +|...+.|+||||-.+
T Consensus 43 d~~~g~g~TlVDsLdTL~iMgl~----~ef~~a~~~v~~i~f~~~~~~~~~vsvFEttIR~LGGLLsa 106 (488)
T d1hcua_ 43 DERNGWGSSAIDGLDTAILMGDA----DIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSA 106 (488)
T ss_dssp CTTTTSCHHHHHHHHHHHHTTCH----HHHHHHHHHGGGCCTTCCSSTTCCEEHHHHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHcCCh----HHHHHHHHHHHhccCCcccccCCccchhhhhHHHHHHHHHH
Confidence 34467899999999999665421 2255544333210000111122 7999999999998654
No 3
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.23 E-value=94 Score=29.74 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=34.2
Q ss_pred cccccccccchhhHHHHHHhhcccCC-----CccchhhhccccccceeeeeeehhhHHHHHHHHHhhhhhc
Q 040288 88 INQNNTWELKLIDHLSEIIKVETVGD-----AETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRA 153 (413)
Q Consensus 88 In~KNAW~l~LID~m~dll~~~d~~~-----~~tNFQkAS~TLDAsvKIYs~RVDSVhtetyKvL~gL~r~ 153 (413)
.+-...|.+.|||-|+.|.-..+... -..-|++|---+....+.=....=+|...+.|+||||-.+
T Consensus 41 ~~g~~~~g~TlvDsLdTL~iMG~~~~~~~~~l~~e~~~~~~~v~~~~~f~~~~~v~vFEttIR~LGGLLsA 111 (511)
T d1dl2a_ 41 PRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSA 111 (511)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHTCCCCCSSEEEHHHHHHHHHHHHHHH
T ss_pred CCCcccccchHHHhHHHHHHcCCCcccchhhHHHHHHHHHHHHHhccCCCcCCccchheeeHHHHHHHHHH
Confidence 33334589999999999865421000 0012444321111110000011237888999999998654
No 4
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.82 E-value=65 Score=26.23 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHhhcccc
Q 040288 68 SEEQIVELLQNCIKLASENKIN 89 (413)
Q Consensus 68 s~~qi~e~y~~cIKLateNKIn 89 (413)
+.+.|.+.|.+|++++.++||+
T Consensus 102 ~~~~L~~~~~~~L~~a~~~~~~ 123 (188)
T d1yd9a1 102 CEELLEKTVKNCLALADDRKLK 123 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHcCCC
Confidence 5667999999999999999975
No 5
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.57 E-value=84 Score=25.45 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccccccccccchhh
Q 040288 65 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLID 100 (413)
Q Consensus 65 ~~ls~~qi~e~y~~cIKLateNKIn~KNAW~l~LID 100 (413)
+.++.+|..++..+||+.+.++-+.+.+-+.+.+|+
T Consensus 155 ~~ms~~ea~~l~~~al~~a~~rd~~sg~~~~v~ii~ 190 (204)
T d1iruj_ 155 PNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIE 190 (204)
T ss_dssp SSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 678999999999999999999999888888888776
No 6
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.70 E-value=85 Score=25.63 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccccccccccchhh
Q 040288 65 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLID 100 (413)
Q Consensus 65 ~~ls~~qi~e~y~~cIKLateNKIn~KNAW~l~LID 100 (413)
+.|+.++..++..+||+.+.+.-+.+-+...+.+|+
T Consensus 153 ~~ms~~ea~~l~~~al~~a~~rD~~sg~~v~v~iit 188 (205)
T d1ryph_ 153 ENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLT 188 (205)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEc
Confidence 789999999999999999999988887777777776
No 7
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.85 E-value=54 Score=31.04 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=32.7
Q ss_pred cccccchhhHHHHHHhhcccCCCccchhhhcc----ccccceeeeeeehhhHHHHHHHHHhhhhhc
Q 040288 92 NTWELKLIDHLSEIIKVETVGDAETNFQKASC----TLEAGVKIYSVRVDAVHAQAYKVLGGITRA 153 (413)
Q Consensus 92 NAW~l~LID~m~dll~~~d~~~~~tNFQkAS~----TLDAsvKIYs~RVDSVhtetyKvL~gL~r~ 153 (413)
|-|.+.|||-|..|.-..- ..-|+.|-- .|+-. +. ..| +|...+.|+||||-.+
T Consensus 60 ~~~g~tlvDsLdTL~imgl----~~ef~~a~~~v~~~~~f~-~~--~~v-~vFEt~iR~LGGLlsA 117 (467)
T d1nxca_ 60 NIKGATIVDALDTLFIMGM----KTEFQEAKSWIKKYLDFN-VN--AEV-SVFEVNIRFVGGLLSA 117 (467)
T ss_dssp TCCCHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHCCCC-CS--SEE-EHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCC-CC--Ccc-chhhhhhHhhhhHHHH
Confidence 5689999999999965432 112444321 12211 11 122 6788999999998754
No 8
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.51 E-value=75 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccccccccccchhh
Q 040288 65 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLID 100 (413)
Q Consensus 65 ~~ls~~qi~e~y~~cIKLateNKIn~KNAW~l~LID 100 (413)
+.++.+|..++-.+||+.+.+.+++..| +++.+|+
T Consensus 179 ~~ms~eea~~l~~~~L~~~~~~d~~~~~-vev~ii~ 213 (233)
T d1irub_ 179 EDLELEDAIHTAILTLKESFEGQMTEDN-IEVGICN 213 (233)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCSCCCSSS-EEEEEEE
T ss_pred cCccHHHHHHHHHHHHHHHHhccCCCCc-EEEEEEe
Confidence 6778888888888899888888887765 7777764
No 9
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=7.19 E-value=1e+02 Score=23.09 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhccCCCCCcCHHH
Q 040288 269 FAKELIGKMVNDMHAKTEISPTLRE 293 (413)
Q Consensus 269 ~lk~~i~~~~~~~~~~~~IcPSL~~ 293 (413)
.|.+.|...+..-.....||||=..
T Consensus 7 ~le~~Il~Ll~~R~~~~ticPsEvA 31 (85)
T d2ns0a1 7 ELEECIRALLDARADSASICPSDVA 31 (85)
T ss_dssp HHHHHHHHHHHHSCTTCCBCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 3556666666565667899998654
No 10
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}
Probab=6.72 E-value=1.6e+02 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccc
Q 040288 66 CLSEEQIVELLQNCIKLASENKIN 89 (413)
Q Consensus 66 ~ls~~qi~e~y~~cIKLateNKIn 89 (413)
..+.+.|.+.|.+|++++.+++|.
T Consensus 89 ~~~~~~l~~~~~~~L~~a~~~~~~ 112 (172)
T d1spva_ 89 QNEDQLLQDAYLNSLRLVAANSYT 112 (172)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345566899999999999999874
Done!