Query 040291
Match_columns 160
No_of_seqs 159 out of 1125
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 99.9 6.6E-26 1.4E-30 180.2 17.2 146 3-155 6-151 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 99.9 7E-26 1.5E-30 179.9 16.7 145 3-154 7-152 (451)
3 PLN02173 UDP-glucosyl transfer 99.9 1.9E-25 4.1E-30 177.1 16.2 140 1-147 1-144 (449)
4 PLN02152 indole-3-acetate beta 99.9 3.2E-25 7E-30 176.0 17.2 145 1-150 1-149 (455)
5 PLN02448 UDP-glycosyltransfera 99.9 4.6E-25 9.9E-30 176.1 16.2 143 3-154 10-155 (459)
6 PLN00164 glucosyltransferase; 99.9 1E-24 2.2E-29 174.7 16.3 147 1-152 1-155 (480)
7 PLN02670 transferase, transfer 99.9 1.1E-24 2.3E-29 173.6 15.6 145 3-156 6-159 (472)
8 PLN02555 limonoid glucosyltran 99.9 1.7E-24 3.8E-29 172.9 16.3 146 3-149 7-158 (480)
9 PLN02554 UDP-glycosyltransfera 99.9 3.3E-24 7.1E-29 172.0 15.5 147 3-153 2-158 (481)
10 PLN02863 UDP-glucoronosyl/UDP- 99.9 4.4E-24 9.5E-29 170.7 15.7 139 3-149 9-156 (477)
11 PLN02534 UDP-glycosyltransfera 99.9 7.7E-24 1.7E-28 169.5 16.4 143 1-147 5-159 (491)
12 PLN03004 UDP-glycosyltransfera 99.9 9E-24 2E-28 167.7 16.2 149 1-151 1-156 (451)
13 PLN02210 UDP-glucosyl transfer 99.9 7.3E-24 1.6E-28 168.8 15.4 136 3-149 8-145 (456)
14 PLN02207 UDP-glycosyltransfera 99.9 1.4E-23 3E-28 167.1 16.7 151 1-152 1-160 (468)
15 PLN02992 coniferyl-alcohol glu 99.9 1.7E-23 3.8E-28 167.0 15.9 141 2-152 4-149 (481)
16 PLN03007 UDP-glucosyltransfera 99.9 3.3E-23 7.1E-28 166.3 16.0 140 3-148 5-163 (482)
17 PLN02167 UDP-glycosyltransfera 99.9 6.4E-23 1.4E-27 164.3 16.6 151 1-151 1-162 (475)
18 PLN00414 glycosyltransferase f 99.9 4.4E-23 9.5E-28 163.8 15.1 136 1-147 1-146 (446)
19 PLN03015 UDP-glucosyl transfer 99.9 8E-23 1.7E-27 162.6 16.6 148 1-152 1-153 (470)
20 PLN02208 glycosyltransferase f 99.9 7.7E-23 1.7E-27 162.2 14.5 137 1-149 1-147 (442)
21 PLN02764 glycosyltransferase f 99.9 5.6E-22 1.2E-26 157.2 16.0 136 3-147 5-147 (453)
22 cd03784 GT1_Gtf_like This fami 99.8 2.7E-19 5.8E-24 140.6 9.8 124 4-139 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.8 9.6E-18 2.1E-22 131.6 11.0 118 9-138 1-123 (392)
24 PF03033 Glyco_transf_28: Glyc 99.6 3E-16 6.6E-21 106.3 2.0 123 6-139 1-132 (139)
25 KOG1192 UDP-glucuronosyl and U 99.3 1.6E-12 3.4E-17 104.9 6.5 147 3-150 5-158 (496)
26 PHA03392 egt ecdysteroid UDP-g 99.3 2.2E-11 4.8E-16 98.7 10.7 127 3-140 20-170 (507)
27 PF00201 UDPGT: UDP-glucoronos 99.1 5.5E-13 1.2E-17 107.8 -6.9 122 4-136 1-148 (500)
28 COG1819 Glycosyl transferases, 99.0 6E-10 1.3E-14 88.2 7.3 120 3-136 1-124 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.9 2.7E-08 5.9E-13 75.9 11.8 121 4-140 1-126 (318)
30 TIGR00661 MJ1255 conserved hyp 98.8 6.2E-08 1.3E-12 74.4 10.8 119 5-137 1-122 (321)
31 PRK12446 undecaprenyldiphospho 98.6 6.7E-07 1.5E-11 69.7 11.2 116 4-137 2-123 (352)
32 COG0707 MurG UDP-N-acetylgluco 98.3 1.1E-05 2.4E-10 62.9 11.4 117 5-136 2-122 (357)
33 TIGR01133 murG undecaprenyldip 98.1 6.4E-05 1.4E-09 57.9 11.9 114 5-134 2-119 (348)
34 PRK00726 murG undecaprenyldiph 98.1 6.5E-05 1.4E-09 58.3 11.8 115 4-134 2-120 (357)
35 cd03785 GT1_MurG MurG is an N- 98.1 6.3E-05 1.4E-09 58.0 11.6 115 5-134 1-118 (350)
36 TIGR00215 lpxB lipid-A-disacch 98.0 6.5E-05 1.4E-09 59.3 10.0 111 4-134 6-119 (385)
37 cd03816 GT1_ALG1_like This fam 97.5 0.0044 9.6E-08 49.3 13.2 59 2-66 2-60 (415)
38 PRK00025 lpxB lipid-A-disaccha 97.5 0.0015 3.3E-08 51.0 10.4 37 4-41 2-38 (380)
39 cd03818 GT1_ExpC_like This fam 97.5 0.0044 9.6E-08 48.8 12.5 115 5-135 1-116 (396)
40 TIGR03590 PseG pseudaminic aci 97.5 0.0034 7.3E-08 47.5 11.3 51 11-67 11-61 (279)
41 COG4671 Predicted glycosyl tra 97.2 0.001 2.2E-08 51.5 6.2 57 3-67 9-69 (400)
42 cd03800 GT1_Sucrose_synthase T 97.1 0.0063 1.4E-07 47.3 9.3 110 14-136 21-132 (398)
43 PF13579 Glyco_trans_4_4: Glyc 97.0 0.0013 2.8E-08 44.2 4.7 98 19-137 6-105 (160)
44 cd03823 GT1_ExpE7_like This fa 97.0 0.012 2.6E-07 44.6 10.4 30 14-43 15-44 (359)
45 PF13477 Glyco_trans_4_2: Glyc 97.0 0.035 7.5E-07 36.9 11.3 103 5-136 1-107 (139)
46 COG3980 spsG Spore coat polysa 96.9 0.011 2.3E-07 44.6 8.5 96 4-138 1-103 (318)
47 PLN02871 UDP-sulfoquinovose:DA 96.8 0.015 3.3E-07 47.0 10.0 41 2-42 57-102 (465)
48 PRK10307 putative glycosyl tra 96.7 0.025 5.3E-07 44.8 10.4 38 4-41 1-42 (412)
49 PF04007 DUF354: Protein of un 96.7 0.036 7.8E-07 43.1 10.8 105 14-141 10-116 (335)
50 cd03814 GT1_like_2 This family 96.5 0.025 5.4E-07 43.0 8.9 29 14-42 14-42 (364)
51 cd03794 GT1_wbuB_like This fam 96.5 0.037 8E-07 42.1 9.9 39 5-43 1-43 (394)
52 PRK02261 methylaspartate mutas 96.5 0.13 2.8E-06 34.8 12.1 46 1-46 1-46 (137)
53 cd03808 GT1_cap1E_like This fa 96.5 0.066 1.4E-06 40.2 11.1 40 5-44 1-40 (359)
54 PF12000 Glyco_trans_4_3: Gkyc 96.4 0.048 1E-06 38.3 9.1 94 29-135 1-95 (171)
55 cd04962 GT1_like_5 This family 96.3 0.078 1.7E-06 40.8 10.5 37 5-41 2-39 (371)
56 TIGR02468 sucrsPsyn_pln sucros 96.2 0.11 2.4E-06 46.1 11.6 124 14-137 195-342 (1050)
57 TIGR02470 sucr_synth sucrose s 96.1 0.13 2.7E-06 44.5 11.6 115 14-136 279-416 (784)
58 cd03817 GT1_UGDG_like This fam 96.1 0.11 2.3E-06 39.4 10.3 33 10-42 10-42 (374)
59 PLN00142 sucrose synthase 95.8 0.092 2E-06 45.4 9.4 108 22-137 319-440 (815)
60 cd03802 GT1_AviGT4_like This f 95.7 0.2 4.2E-06 37.9 10.1 39 4-42 1-47 (335)
61 cd03796 GT1_PIG-A_like This fa 95.6 0.19 4.2E-06 39.6 10.0 102 15-135 15-120 (398)
62 cd03805 GT1_ALG2_like This fam 95.6 0.26 5.7E-06 38.3 10.7 38 4-41 1-40 (392)
63 cd03819 GT1_WavL_like This fam 95.3 0.56 1.2E-05 35.7 11.5 99 14-137 10-110 (355)
64 cd02067 B12-binding B12 bindin 95.2 0.5 1.1E-05 30.7 9.7 41 5-45 1-41 (119)
65 TIGR02472 sucr_P_syn_N sucrose 95.1 0.32 6.9E-06 39.1 10.0 113 16-136 28-145 (439)
66 TIGR03449 mycothiol_MshA UDP-N 95.1 0.29 6.3E-06 38.5 9.5 113 13-137 19-133 (405)
67 PRK13609 diacylglycerol glucos 94.5 0.058 1.3E-06 42.2 4.3 38 3-40 4-42 (380)
68 COG1703 ArgK Putative periplas 94.4 0.46 9.9E-06 36.4 8.5 41 4-44 52-92 (323)
69 cd03801 GT1_YqgM_like This fam 94.4 0.49 1.1E-05 35.4 8.9 30 14-43 14-43 (374)
70 cd04955 GT1_like_6 This family 94.3 0.58 1.3E-05 35.7 9.3 46 14-66 15-60 (363)
71 PLN02275 transferase, transfer 94.3 2.1 4.4E-05 33.6 14.0 126 3-137 4-135 (371)
72 TIGR03568 NeuC_NnaA UDP-N-acet 94.2 1.3 2.9E-05 34.8 11.2 115 5-137 2-126 (365)
73 cd02070 corrinoid_protein_B12- 94.1 1.3 2.8E-05 31.8 10.2 44 3-46 82-125 (201)
74 cd03820 GT1_amsD_like This fam 93.9 0.72 1.6E-05 34.4 9.0 31 13-43 12-42 (348)
75 cd03786 GT1_UDP-GlcNAc_2-Epime 93.8 0.2 4.4E-06 38.7 5.9 36 6-42 2-38 (363)
76 TIGR00236 wecB UDP-N-acetylglu 93.6 1.3 2.7E-05 34.5 10.1 110 5-134 2-116 (365)
77 PRK05749 3-deoxy-D-manno-octul 93.4 0.37 8E-06 38.4 7.0 92 11-135 57-154 (425)
78 cd03795 GT1_like_4 This family 93.3 2.4 5.2E-05 32.2 11.1 31 13-43 13-43 (357)
79 cd03812 GT1_CapH_like This fam 93.2 1.9 4.1E-05 32.8 10.4 39 5-43 1-41 (358)
80 PLN02846 digalactosyldiacylgly 92.9 0.22 4.8E-06 40.5 4.9 40 2-41 3-47 (462)
81 COG1817 Uncharacterized protei 92.8 3 6.4E-05 32.3 10.4 108 12-141 8-117 (346)
82 PF13439 Glyco_transf_4: Glyco 92.5 0.19 4.2E-06 34.0 3.7 30 14-43 12-41 (177)
83 cd03798 GT1_wlbH_like This fam 91.8 1.9 4.1E-05 32.4 8.8 31 13-43 13-43 (377)
84 cd04951 GT1_WbdM_like This fam 91.6 0.25 5.3E-06 37.7 3.7 36 6-41 2-39 (360)
85 PF02441 Flavoprotein: Flavopr 91.5 0.34 7.3E-06 32.2 3.8 43 4-47 1-43 (129)
86 cd03825 GT1_wcfI_like This fam 91.4 0.38 8.2E-06 36.7 4.6 39 4-42 1-41 (365)
87 PRK10916 ADP-heptose:LPS hepto 91.2 4.7 0.0001 31.3 10.5 44 4-47 1-46 (348)
88 PRK05986 cob(I)alamin adenolsy 91.2 4.3 9.2E-05 29.1 11.2 38 1-38 20-57 (191)
89 PRK01175 phosphoribosylformylg 91.1 5.1 0.00011 30.2 10.1 58 1-69 1-58 (261)
90 COG0381 WecB UDP-N-acetylgluco 91.0 1.3 2.9E-05 35.0 7.1 118 1-136 1-124 (383)
91 COG2185 Sbm Methylmalonyl-CoA 90.4 0.95 2.1E-05 30.8 5.2 43 1-43 10-52 (143)
92 cd03821 GT1_Bme6_like This fam 90.3 0.59 1.3E-05 35.3 4.7 31 13-43 13-43 (375)
93 cd03792 GT1_Trehalose_phosphor 90.2 2.4 5.2E-05 33.0 8.1 37 6-42 2-40 (372)
94 TIGR00087 surE 5'/3'-nucleotid 90.2 4.3 9.3E-05 30.3 9.0 26 19-45 15-40 (244)
95 PRK08305 spoVFB dipicolinate s 90.2 0.55 1.2E-05 33.8 4.1 42 2-43 4-45 (196)
96 PF02951 GSH-S_N: Prokaryotic 89.8 0.79 1.7E-05 30.2 4.3 39 4-42 1-42 (119)
97 COG0496 SurE Predicted acid ph 89.7 2.3 5E-05 31.8 7.2 26 19-45 15-40 (252)
98 PRK13932 stationary phase surv 89.6 2.9 6.2E-05 31.4 7.7 41 3-45 5-45 (257)
99 PRK00654 glgA glycogen synthas 89.6 0.67 1.4E-05 37.6 4.7 37 4-40 1-43 (466)
100 PRK10964 ADP-heptose:LPS hepto 89.5 4.2 9.2E-05 31.1 8.9 43 4-46 1-45 (322)
101 cd01425 RPS2 Ribosomal protein 89.4 1.9 4.2E-05 30.8 6.4 34 106-139 126-161 (193)
102 PRK13934 stationary phase surv 89.2 5.5 0.00012 30.1 8.9 27 18-45 14-40 (266)
103 TIGR03600 phage_DnaB phage rep 88.7 7.1 0.00015 31.3 9.9 41 6-46 197-238 (421)
104 COG1519 KdtA 3-deoxy-D-manno-o 88.6 7.3 0.00016 31.4 9.6 97 8-136 53-154 (419)
105 TIGR02370 pyl_corrinoid methyl 88.5 1.6 3.5E-05 31.2 5.6 45 3-47 84-128 (197)
106 PRK13935 stationary phase surv 88.3 6.2 0.00013 29.6 8.6 25 20-45 16-40 (253)
107 PF08660 Alg14: Oligosaccharid 88.2 6.9 0.00015 27.4 8.4 31 11-41 5-37 (170)
108 PF02310 B12-binding: B12 bind 88.1 2.9 6.3E-05 26.9 6.2 38 5-42 2-39 (121)
109 TIGR00715 precor6x_red precorr 87.8 4 8.6E-05 30.6 7.4 24 20-43 12-35 (256)
110 PRK08506 replicative DNA helic 87.8 7 0.00015 32.0 9.4 41 6-46 195-235 (472)
111 cd03811 GT1_WabH_like This fam 87.5 1.3 2.8E-05 33.0 4.8 39 5-43 1-41 (353)
112 PLN02605 monogalactosyldiacylg 87.3 5.2 0.00011 31.5 8.3 31 7-37 3-36 (382)
113 PRK13933 stationary phase surv 87.2 9.3 0.0002 28.7 9.0 24 20-44 16-39 (253)
114 cd03789 GT1_LPS_heptosyltransf 86.9 11 0.00024 28.2 10.1 43 5-47 1-45 (279)
115 PRK14099 glycogen synthase; Pr 86.9 1.4 3.1E-05 36.0 5.0 40 1-40 1-46 (485)
116 smart00851 MGS MGS-like domain 86.5 5.6 0.00012 24.4 8.0 27 20-48 2-28 (90)
117 PRK13931 stationary phase surv 86.2 9.7 0.00021 28.7 8.7 98 20-136 16-129 (261)
118 cd03807 GT1_WbnK_like This fam 86.1 12 0.00026 27.9 10.7 32 11-42 9-40 (365)
119 TIGR02095 glgA glycogen/starch 86.1 1.6 3.6E-05 35.3 5.0 38 4-41 1-44 (473)
120 cd00561 CobA_CobO_BtuR ATP:cor 85.9 9.4 0.0002 26.5 11.4 35 3-37 2-36 (159)
121 PRK01021 lpxB lipid-A-disaccha 85.7 12 0.00026 31.7 9.8 42 92-136 298-344 (608)
122 cd02069 methionine_synthase_B1 85.6 2.9 6.4E-05 30.4 5.6 44 3-46 88-131 (213)
123 COG1618 Predicted nucleotide k 85.6 3.6 7.9E-05 28.8 5.6 56 3-67 5-60 (179)
124 cd02071 MM_CoA_mut_B12_BD meth 85.4 3 6.4E-05 27.4 5.1 42 5-46 1-42 (122)
125 PRK05595 replicative DNA helic 85.3 8.6 0.00019 31.2 8.6 41 6-46 204-245 (444)
126 PRK09620 hypothetical protein; 85.2 1.6 3.5E-05 32.1 4.2 40 1-40 1-52 (229)
127 cd01635 Glycosyltransferase_GT 85.0 1.8 4E-05 30.2 4.3 26 13-38 12-37 (229)
128 cd01980 Chlide_reductase_Y Chl 84.9 18 0.0004 29.0 10.7 28 106-136 349-376 (416)
129 TIGR03492 conserved hypothetic 84.9 13 0.00028 29.7 9.4 108 15-136 8-121 (396)
130 PRK06321 replicative DNA helic 84.7 14 0.00031 30.3 9.7 41 6-46 229-270 (472)
131 PRK00346 surE 5'(3')-nucleotid 84.4 13 0.00029 27.8 8.7 26 19-45 15-40 (250)
132 TIGR02195 heptsyl_trn_II lipop 84.3 15 0.00033 28.2 9.4 42 5-46 1-44 (334)
133 PRK10422 lipopolysaccharide co 84.3 18 0.00038 28.2 11.2 44 3-46 5-50 (352)
134 PHA02542 41 41 helicase; Provi 84.2 8.1 0.00018 31.7 8.1 41 6-46 193-233 (473)
135 PRK08760 replicative DNA helic 83.7 10 0.00022 31.2 8.5 41 6-46 232-273 (476)
136 PF02684 LpxB: Lipid-A-disacch 83.4 11 0.00025 29.9 8.4 39 93-134 71-114 (373)
137 PF06506 PrpR_N: Propionate ca 83.4 5.9 0.00013 27.7 6.2 48 91-144 112-159 (176)
138 PRK11519 tyrosine kinase; Prov 83.3 29 0.00064 30.1 14.5 39 4-42 526-566 (719)
139 PF07894 DUF1669: Protein of u 83.1 2 4.3E-05 32.7 3.8 45 91-136 133-182 (284)
140 TIGR02852 spore_dpaB dipicolin 82.2 2.2 4.7E-05 30.5 3.6 39 5-43 2-40 (187)
141 cd01423 MGS_CPS_I_III Methylgl 82.0 11 0.00024 24.3 7.4 87 16-133 11-106 (116)
142 PF01975 SurE: Survival protei 81.9 4.5 9.7E-05 29.1 5.2 40 5-45 2-41 (196)
143 PF04127 DFP: DNA / pantothena 81.8 1.9 4.2E-05 30.6 3.3 40 2-41 2-53 (185)
144 COG1484 DnaC DNA replication p 81.8 3.4 7.3E-05 30.9 4.7 47 3-49 105-151 (254)
145 TIGR00665 DnaB replicative DNA 81.7 19 0.0004 29.0 9.2 41 6-46 198-239 (434)
146 cd03791 GT1_Glycogen_synthase_ 81.4 1.7 3.7E-05 35.1 3.2 24 18-41 20-43 (476)
147 COG2874 FlaH Predicted ATPases 81.2 5.1 0.00011 29.4 5.2 32 13-44 38-69 (235)
148 cd01424 MGS_CPS_II Methylglyox 81.0 12 0.00025 23.9 8.2 84 15-133 10-100 (110)
149 PF12146 Hydrolase_4: Putative 81.0 4 8.7E-05 24.6 4.1 34 4-37 16-49 (79)
150 PF08323 Glyco_transf_5: Starc 81.0 1.6 3.5E-05 32.3 2.7 24 18-41 20-43 (245)
151 PF04413 Glycos_transf_N: 3-De 80.8 9.8 0.00021 27.0 6.6 94 11-136 28-126 (186)
152 cd03799 GT1_amsK_like This is 80.2 5 0.00011 30.4 5.3 38 5-42 1-39 (355)
153 cd05844 GT1_like_7 Glycosyltra 80.2 24 0.00052 26.9 9.4 29 106-134 81-111 (367)
154 TIGR02193 heptsyl_trn_I lipopo 80.1 3.9 8.5E-05 31.2 4.7 43 5-47 1-45 (319)
155 PRK06904 replicative DNA helic 79.8 24 0.00053 28.9 9.3 41 6-46 224-265 (472)
156 PRK07313 phosphopantothenoylcy 79.3 2.9 6.3E-05 29.6 3.5 41 4-45 2-42 (182)
157 PRK07773 replicative DNA helic 79.2 24 0.00052 31.4 9.7 41 6-46 220-261 (886)
158 cd03806 GT1_ALG11_like This fa 78.9 31 0.00068 27.6 10.7 113 15-138 15-139 (419)
159 PRK06249 2-dehydropantoate 2-r 78.9 3.4 7.3E-05 31.7 4.0 36 1-41 3-38 (313)
160 TIGR02655 circ_KaiC circadian 78.8 35 0.00076 28.0 10.0 44 5-48 265-308 (484)
161 PRK05636 replicative DNA helic 78.7 22 0.00047 29.5 8.8 41 6-46 268-309 (505)
162 PRK09165 replicative DNA helic 78.7 22 0.00047 29.4 8.8 41 6-46 220-275 (497)
163 PF09314 DUF1972: Domain of un 78.2 3.5 7.6E-05 29.4 3.6 45 15-66 17-62 (185)
164 PRK13982 bifunctional SbtC-lik 77.1 4.3 9.3E-05 33.3 4.2 40 2-41 255-306 (475)
165 TIGR02201 heptsyl_trn_III lipo 77.1 32 0.00068 26.6 10.7 105 5-133 1-108 (344)
166 PRK07004 replicative DNA helic 76.4 36 0.00078 27.8 9.4 41 6-46 216-257 (460)
167 PF04244 DPRP: Deoxyribodipyri 76.1 3.2 7E-05 30.5 3.0 26 16-41 47-72 (224)
168 PF07355 GRDB: Glycine/sarcosi 75.8 7.4 0.00016 30.5 5.0 30 106-135 79-118 (349)
169 cd03822 GT1_ecORF704_like This 75.1 5.6 0.00012 30.0 4.3 38 5-42 1-41 (366)
170 PRK14569 D-alanyl-alanine synt 75.0 9.5 0.00021 29.0 5.5 39 1-40 1-44 (296)
171 PF00070 Pyr_redox: Pyridine n 74.6 6.9 0.00015 23.3 3.8 24 19-42 10-33 (80)
172 COG1066 Sms Predicted ATP-depe 74.0 9.1 0.0002 30.9 5.1 40 6-46 96-135 (456)
173 TIGR00421 ubiX_pad polyprenyl 73.0 5 0.00011 28.4 3.3 40 6-46 2-41 (181)
174 cd01018 ZntC Metal binding pro 72.9 20 0.00043 26.9 6.7 46 92-140 205-252 (266)
175 TIGR00521 coaBC_dfp phosphopan 72.8 6.5 0.00014 31.4 4.2 44 1-45 1-44 (390)
176 PRK06719 precorrin-2 dehydroge 72.7 7.8 0.00017 26.7 4.1 34 2-40 12-45 (157)
177 PRK11823 DNA repair protein Ra 72.6 51 0.0011 26.9 10.6 41 6-46 83-123 (446)
178 PF07302 AroM: AroM protein; 72.6 13 0.00027 27.4 5.3 47 92-141 166-215 (221)
179 PRK04940 hypothetical protein; 72.5 12 0.00026 26.6 5.0 34 107-140 60-94 (180)
180 PRK14089 ipid-A-disaccharide s 72.3 8.7 0.00019 30.2 4.8 31 106-136 75-110 (347)
181 cd01121 Sms Sms (bacterial rad 72.1 48 0.001 26.4 10.8 41 6-46 85-125 (372)
182 PF02572 CobA_CobO_BtuR: ATP:c 71.8 32 0.00069 24.2 7.9 37 3-39 3-39 (172)
183 COG0859 RfaF ADP-heptose:LPS h 71.8 45 0.00097 25.9 8.7 107 4-136 2-110 (334)
184 PRK06849 hypothetical protein; 71.7 11 0.00024 29.8 5.3 38 1-42 1-39 (389)
185 COG2910 Putative NADH-flavin r 71.7 4.6 0.0001 29.0 2.8 35 4-42 1-35 (211)
186 PLN02316 synthase/transferase 71.1 11 0.00023 34.1 5.5 39 3-41 587-631 (1036)
187 PF01210 NAD_Gly3P_dh_N: NAD-d 71.0 3.7 8E-05 28.1 2.2 21 21-41 12-32 (157)
188 cd02065 B12-binding_like B12 b 70.3 16 0.00036 23.4 5.2 41 6-46 2-42 (125)
189 PF06925 MGDG_synth: Monogalac 70.2 15 0.00033 25.3 5.2 42 91-138 79-126 (169)
190 COG0052 RpsB Ribosomal protein 70.1 1.8 4E-05 32.2 0.5 33 107-139 156-190 (252)
191 COG0162 TyrS Tyrosyl-tRNA synt 69.9 5.8 0.00013 31.8 3.3 35 6-41 37-74 (401)
192 PRK11064 wecC UDP-N-acetyl-D-m 69.6 8.9 0.00019 30.8 4.4 35 1-40 1-35 (415)
193 PRK05579 bifunctional phosphop 69.4 8.1 0.00018 31.0 4.1 43 1-44 4-46 (399)
194 PF13450 NAD_binding_8: NAD(P) 69.2 7.8 0.00017 22.5 3.1 21 21-41 9-29 (68)
195 PRK12311 rpsB 30S ribosomal pr 69.1 2.7 5.9E-05 32.7 1.3 34 106-139 151-186 (326)
196 TIGR01918 various_sel_PB selen 69.0 13 0.00029 30.0 5.1 30 106-135 75-114 (431)
197 TIGR01917 gly_red_sel_B glycin 69.0 13 0.00028 30.0 5.1 30 106-135 75-114 (431)
198 TIGR00853 pts-lac PTS system, 68.9 19 0.0004 22.6 4.9 40 1-40 1-40 (95)
199 PRK07206 hypothetical protein; 68.7 37 0.00079 27.0 7.7 35 3-42 2-36 (416)
200 COG0467 RAD55 RecA-superfamily 68.6 20 0.00044 26.5 5.9 46 4-49 24-69 (260)
201 TIGR00708 cobA cob(I)alamin ad 68.6 39 0.00084 23.8 10.6 35 3-37 5-39 (173)
202 TIGR02113 coaC_strep phosphopa 68.4 7 0.00015 27.6 3.2 39 5-44 2-40 (177)
203 TIGR00347 bioD dethiobiotin sy 68.0 32 0.0007 23.3 6.5 28 10-37 5-32 (166)
204 PRK04020 rps2P 30S ribosomal p 67.6 2.7 5.8E-05 30.5 0.9 31 107-137 114-146 (204)
205 TIGR00075 hypD hydrogenase exp 67.3 62 0.0013 25.7 9.8 62 90-155 178-245 (369)
206 TIGR01012 Sa_S2_E_A ribosomal 67.2 2.9 6.2E-05 30.1 1.0 31 107-137 108-140 (196)
207 TIGR01007 eps_fam capsular exo 66.8 42 0.00092 23.7 12.5 39 3-41 16-56 (204)
208 TIGR02128 G6PI_arch bifunction 66.7 57 0.0012 25.2 12.8 134 7-158 69-205 (308)
209 KOG2941 Beta-1,4-mannosyltrans 66.6 65 0.0014 25.7 10.7 60 2-67 11-70 (444)
210 PF10087 DUF2325: Uncharacteri 66.5 16 0.00035 22.8 4.3 37 106-142 47-89 (97)
211 cd01981 Pchlide_reductase_B Pc 66.3 12 0.00026 30.1 4.5 27 106-135 369-395 (430)
212 PRK06179 short chain dehydroge 66.2 15 0.00034 26.9 4.9 37 1-40 1-37 (270)
213 PRK15062 hydrogenase isoenzyme 66.0 66 0.0014 25.6 9.8 50 106-155 184-239 (364)
214 PRK05920 aromatic acid decarbo 65.7 11 0.00024 27.3 3.8 42 4-46 4-45 (204)
215 TIGR02699 archaeo_AfpA archaeo 65.4 13 0.00027 26.3 4.0 32 13-44 8-41 (174)
216 PF01555 N6_N4_Mtase: DNA meth 65.3 15 0.00032 26.1 4.5 34 107-140 190-225 (231)
217 PRK14106 murD UDP-N-acetylmura 65.3 14 0.0003 29.8 4.7 35 2-41 4-38 (450)
218 PRK13604 luxD acyl transferase 64.9 20 0.00043 27.7 5.2 33 5-37 38-70 (307)
219 PRK06029 3-octaprenyl-4-hydrox 64.8 13 0.00028 26.5 3.9 43 4-47 2-45 (185)
220 cd03466 Nitrogenase_NifN_2 Nit 64.7 14 0.00031 29.8 4.7 27 106-135 371-397 (429)
221 COG0859 RfaF ADP-heptose:LPS h 64.6 37 0.00081 26.3 6.9 99 4-138 176-280 (334)
222 TIGR02149 glgA_Coryne glycogen 64.5 64 0.0014 24.9 9.4 35 5-40 2-41 (388)
223 TIGR03880 KaiC_arch_3 KaiC dom 64.4 51 0.0011 23.7 7.9 43 6-48 19-61 (224)
224 PF03720 UDPG_MGDP_dh_C: UDP-g 64.4 11 0.00024 24.0 3.3 26 18-43 17-42 (106)
225 PTZ00254 40S ribosomal protein 64.2 4 8.6E-05 30.5 1.3 30 107-136 118-149 (249)
226 PF12695 Abhydrolase_5: Alpha/ 64.2 24 0.00052 22.8 5.1 35 7-41 2-36 (145)
227 PRK08674 bifunctional phosphog 64.0 67 0.0014 25.0 11.5 139 7-158 81-228 (337)
228 PRK06732 phosphopantothenate-- 64.0 9.6 0.00021 28.0 3.3 19 21-39 30-48 (229)
229 PRK08057 cobalt-precorrin-6x r 64.0 14 0.00031 27.6 4.2 92 3-136 2-100 (248)
230 PRK08229 2-dehydropantoate 2-r 63.9 11 0.00023 29.2 3.7 32 4-40 3-34 (341)
231 cd02034 CooC The accessory pro 63.9 25 0.00055 22.8 5.0 37 5-41 1-37 (116)
232 COG0503 Apt Adenine/guanine ph 63.7 21 0.00045 25.2 4.9 29 106-134 52-82 (179)
233 COG1255 Uncharacterized protei 63.6 9 0.00019 25.2 2.7 20 19-38 24-43 (129)
234 COG3349 Uncharacterized conser 63.6 9 0.00019 31.5 3.3 33 5-42 2-34 (485)
235 TIGR01501 MthylAspMutase methy 63.4 31 0.00068 23.2 5.4 44 3-46 1-44 (134)
236 PF03308 ArgK: ArgK protein; 63.2 17 0.00037 27.5 4.5 41 4-44 30-70 (266)
237 TIGR00288 conserved hypothetic 63.0 33 0.00071 23.9 5.5 26 13-41 114-139 (160)
238 cd01141 TroA_d Periplasmic bin 62.8 17 0.00037 25.2 4.3 39 91-136 60-100 (186)
239 PF02350 Epimerase_2: UDP-N-ac 62.6 6.7 0.00014 30.7 2.4 40 92-137 58-100 (346)
240 PRK01372 ddl D-alanine--D-alan 62.6 22 0.00049 26.8 5.3 42 1-42 2-47 (304)
241 PRK10499 PTS system N,N'-diace 62.6 25 0.00054 22.5 4.7 38 1-38 1-38 (106)
242 KOG0081 GTPase Rab27, small G 62.2 24 0.00051 24.8 4.7 45 93-137 109-164 (219)
243 PF02558 ApbA: Ketopantoate re 62.1 9.2 0.0002 25.6 2.8 20 22-41 12-31 (151)
244 TIGR00745 apbA_panE 2-dehydrop 62.0 9.6 0.00021 28.5 3.1 19 22-40 5-23 (293)
245 PF01380 SIS: SIS domain SIS d 61.9 39 0.00086 21.6 6.1 35 10-44 59-93 (131)
246 cd01965 Nitrogenase_MoFe_beta_ 61.6 18 0.00038 29.2 4.7 27 106-135 370-396 (428)
247 PRK05299 rpsB 30S ribosomal pr 61.5 4.4 9.5E-05 30.5 1.1 35 106-140 156-192 (258)
248 PTZ00318 NADH dehydrogenase-li 61.3 11 0.00025 30.1 3.5 37 1-42 8-44 (424)
249 TIGR02015 BchY chlorophyllide 60.9 16 0.00035 29.5 4.3 27 106-135 354-380 (422)
250 CHL00067 rps2 ribosomal protei 60.9 5.4 0.00012 29.4 1.5 36 106-141 160-197 (230)
251 CHL00076 chlB photochlorophyll 60.6 17 0.00037 30.2 4.5 27 106-135 373-399 (513)
252 TIGR02700 flavo_MJ0208 archaeo 60.4 19 0.0004 26.5 4.3 35 12-46 7-44 (234)
253 PF05728 UPF0227: Uncharacteri 60.2 21 0.00046 25.4 4.4 32 109-140 61-93 (187)
254 COG0665 DadA Glycine/D-amino a 60.1 14 0.00029 28.8 3.8 35 2-41 3-37 (387)
255 PRK06180 short chain dehydroge 59.8 24 0.00051 26.2 4.9 35 3-40 3-37 (277)
256 KOG1053 Glutamate-gated NMDA-t 59.7 6.7 0.00015 34.7 2.0 75 57-135 686-760 (1258)
257 PRK08293 3-hydroxybutyryl-CoA 59.7 14 0.00031 27.9 3.7 35 1-40 1-35 (287)
258 PRK12342 hypothetical protein; 59.6 23 0.00051 26.6 4.7 30 107-136 109-144 (254)
259 TIGR01011 rpsB_bact ribosomal 59.5 5 0.00011 29.5 1.1 35 106-140 154-190 (225)
260 PF03403 PAF-AH_p_II: Platelet 59.5 11 0.00025 29.9 3.2 37 5-41 101-137 (379)
261 TIGR01278 DPOR_BchB light-inde 59.1 20 0.00042 29.8 4.6 27 106-135 363-389 (511)
262 PRK03359 putative electron tra 58.9 24 0.00052 26.5 4.7 30 107-136 112-147 (256)
263 PF02780 Transketolase_C: Tran 58.9 27 0.00058 22.7 4.5 36 3-40 9-44 (124)
264 cd01075 NAD_bind_Leu_Phe_Val_D 58.7 17 0.00037 26.0 3.8 31 2-37 27-57 (200)
265 TIGR01285 nifN nitrogenase mol 58.6 21 0.00046 28.9 4.6 26 106-134 372-397 (432)
266 PRK10481 hypothetical protein; 58.5 30 0.00065 25.5 5.0 45 93-140 171-218 (224)
267 PRK14098 glycogen synthase; Pr 58.4 11 0.00025 30.9 3.2 37 4-40 6-48 (489)
268 COG4088 Predicted nucleotide k 58.4 15 0.00032 27.1 3.3 34 6-39 4-37 (261)
269 PRK06522 2-dehydropantoate 2-r 58.2 16 0.00034 27.6 3.7 31 5-40 2-32 (304)
270 KOG1014 17 beta-hydroxysteroid 58.0 12 0.00025 29.0 2.9 20 21-40 63-82 (312)
271 TIGR01286 nifK nitrogenase mol 57.9 19 0.00042 29.9 4.4 26 106-134 436-461 (515)
272 TIGR00234 tyrS tyrosyl-tRNA sy 57.6 11 0.00024 30.0 2.8 34 7-41 36-72 (377)
273 PF00448 SRP54: SRP54-type pro 57.3 27 0.00059 24.9 4.6 38 6-43 4-41 (196)
274 PRK06718 precorrin-2 dehydroge 57.3 20 0.00043 25.8 3.9 35 2-41 9-43 (202)
275 PLN02240 UDP-glucose 4-epimera 57.2 24 0.00051 27.1 4.6 33 2-38 4-36 (352)
276 COG0299 PurN Folate-dependent 57.2 31 0.00067 24.9 4.7 47 92-138 13-60 (200)
277 COG0300 DltE Short-chain dehyd 57.1 13 0.00029 28.0 3.1 34 4-40 6-39 (265)
278 PRK14619 NAD(P)H-dependent gly 56.8 19 0.00041 27.5 4.0 35 2-41 3-37 (308)
279 PRK02910 light-independent pro 56.7 23 0.00051 29.4 4.7 26 106-134 361-386 (519)
280 PRK13982 bifunctional SbtC-lik 56.7 21 0.00046 29.4 4.3 43 3-46 70-112 (475)
281 PF13460 NAD_binding_10: NADH( 56.6 15 0.00032 25.3 3.1 29 12-42 5-33 (183)
282 cd01974 Nitrogenase_MoFe_beta 56.5 26 0.00056 28.3 4.8 27 106-135 376-402 (435)
283 PRK07236 hypothetical protein; 56.4 15 0.00032 28.9 3.4 34 1-39 4-37 (386)
284 PRK05993 short chain dehydroge 56.3 29 0.00062 25.8 4.8 36 1-39 1-36 (277)
285 PRK12921 2-dehydropantoate 2-r 56.0 28 0.00061 26.3 4.8 30 5-39 2-31 (305)
286 PF01297 TroA: Periplasmic sol 55.9 24 0.00052 26.1 4.3 43 92-137 187-231 (256)
287 PF02571 CbiJ: Precorrin-6x re 55.9 18 0.0004 27.0 3.6 34 4-43 1-34 (249)
288 PF02374 ArsA_ATPase: Anion-tr 55.7 33 0.00072 26.4 5.1 39 5-43 2-41 (305)
289 PRK09922 UDP-D-galactose:(gluc 55.4 30 0.00064 26.8 4.9 39 4-42 1-44 (359)
290 PF03853 YjeF_N: YjeF-related 55.2 17 0.00038 25.2 3.3 35 3-38 25-59 (169)
291 PRK14478 nitrogenase molybdenu 54.8 19 0.00042 29.5 3.9 26 106-134 392-417 (475)
292 PRK13608 diacylglycerol glucos 54.7 26 0.00056 27.7 4.5 35 3-37 5-43 (391)
293 cd01983 Fer4_NifH The Fer4_Nif 54.7 43 0.00092 19.7 4.8 33 6-38 2-34 (99)
294 TIGR01005 eps_transp_fam exopo 54.3 1.5E+02 0.0032 25.9 12.2 39 4-42 546-586 (754)
295 PF01695 IstB_IS21: IstB-like 54.3 22 0.00048 24.9 3.7 43 4-46 48-90 (178)
296 PRK01966 ddl D-alanyl-alanine 54.2 32 0.00069 26.6 4.9 40 1-41 1-45 (333)
297 COG4081 Uncharacterized protei 54.2 30 0.00066 23.2 4.0 29 14-42 15-43 (148)
298 COG0569 TrkA K+ transport syst 54.2 13 0.00029 27.2 2.6 22 21-42 13-34 (225)
299 cd03115 SRP The signal recogni 54.1 47 0.001 22.7 5.4 39 6-44 3-41 (173)
300 PLN00016 RNA-binding protein; 54.0 24 0.00052 27.7 4.2 36 4-41 53-90 (378)
301 PF00391 PEP-utilizers: PEP-ut 53.9 26 0.00056 21.0 3.5 31 106-136 29-61 (80)
302 PRK00683 murD UDP-N-acetylmura 53.8 19 0.0004 28.9 3.6 33 1-38 1-33 (418)
303 TIGR03264 met_CoM_red_C methyl 53.7 23 0.00049 25.1 3.5 33 6-38 36-69 (194)
304 cd01147 HemV-2 Metal binding p 53.6 28 0.0006 25.5 4.3 40 91-137 65-107 (262)
305 PF01497 Peripla_BP_2: Peripla 53.5 58 0.0013 23.3 6.0 33 106-138 59-93 (238)
306 TIGR00064 ftsY signal recognit 53.2 40 0.00086 25.5 5.1 39 5-43 74-112 (272)
307 cd01976 Nitrogenase_MoFe_alpha 53.2 21 0.00045 28.8 3.8 28 106-136 368-395 (421)
308 PRK14568 vanB D-alanine--D-lac 53.1 32 0.0007 26.7 4.8 38 1-39 1-43 (343)
309 PRK13886 conjugal transfer pro 53.1 38 0.00083 25.2 4.9 43 1-43 1-43 (241)
310 PRK12829 short chain dehydroge 53.1 42 0.00092 24.3 5.2 34 3-40 11-44 (264)
311 PF14626 RNase_Zc3h12a_2: Zc3h 53.0 15 0.00032 24.2 2.4 30 17-46 9-38 (122)
312 PRK11914 diacylglycerol kinase 52.9 55 0.0012 24.9 6.0 41 1-41 6-49 (306)
313 cd03809 GT1_mtfB_like This fam 52.8 27 0.00059 26.2 4.3 29 14-42 15-43 (365)
314 PRK09219 xanthine phosphoribos 52.7 36 0.00079 24.2 4.6 32 106-137 49-82 (189)
315 cd02032 Bchl_like This family 52.2 35 0.00075 25.3 4.7 36 5-40 2-37 (267)
316 KOG3062 RNA polymerase II elon 52.2 37 0.00081 25.4 4.5 30 4-33 2-31 (281)
317 PRK09072 short chain dehydroge 51.7 45 0.00098 24.3 5.2 33 5-40 6-38 (263)
318 PRK06222 ferredoxin-NADP(+) re 51.6 28 0.0006 26.3 4.1 38 4-43 99-136 (281)
319 PF09001 DUF1890: Domain of un 51.6 14 0.0003 25.0 2.1 30 17-46 13-42 (139)
320 COG2084 MmsB 3-hydroxyisobutyr 51.6 29 0.00063 26.6 4.2 32 5-41 2-33 (286)
321 KOG1509 Predicted nucleic acid 51.5 57 0.0012 23.6 5.3 73 29-112 7-82 (209)
322 PRK09739 hypothetical protein; 51.4 60 0.0013 23.0 5.6 39 1-39 1-42 (199)
323 PTZ00445 p36-lilke protein; Pr 51.4 21 0.00046 26.1 3.2 28 15-42 74-102 (219)
324 TIGR03088 stp2 sugar transfera 51.4 1.1E+02 0.0024 23.5 11.1 102 4-131 2-106 (374)
325 PF02302 PTS_IIB: PTS system, 51.4 33 0.00071 20.6 3.8 36 5-40 1-37 (90)
326 PRK00652 lpxK tetraacyldisacch 51.0 36 0.00079 26.5 4.7 34 6-39 52-87 (325)
327 PLN03209 translocon at the inn 51.0 35 0.00076 28.9 4.8 34 3-39 79-112 (576)
328 TIGR00640 acid_CoA_mut_C methy 50.9 30 0.00065 23.1 3.7 37 3-39 53-90 (132)
329 PF03205 MobB: Molybdopterin g 50.9 42 0.00091 22.5 4.5 37 4-40 1-37 (140)
330 PRK13234 nifH nitrogenase redu 50.7 45 0.00097 25.4 5.1 40 1-40 1-41 (295)
331 TIGR02114 coaB_strep phosphopa 50.7 19 0.0004 26.4 2.9 18 21-38 29-46 (227)
332 TIGR01675 plant-AP plant acid 50.5 27 0.00058 25.8 3.7 27 17-43 122-148 (229)
333 TIGR00176 mobB molybdopterin-g 50.2 44 0.00096 22.8 4.6 35 6-40 2-36 (155)
334 cd01017 AdcA Metal binding pro 50.1 52 0.0011 24.8 5.4 43 92-137 208-252 (282)
335 CHL00072 chlL photochlorophyll 50.1 44 0.00095 25.4 5.0 36 5-40 2-37 (290)
336 cd01916 ACS_1 Acetyl-CoA synth 49.9 20 0.00043 31.2 3.3 32 106-137 264-297 (731)
337 COG2099 CobK Precorrin-6x redu 49.7 28 0.0006 26.2 3.6 25 20-44 14-38 (257)
338 PRK13608 diacylglycerol glucos 49.7 32 0.00068 27.2 4.3 32 106-137 103-136 (391)
339 PRK05632 phosphate acetyltrans 49.5 1.8E+02 0.0038 25.3 12.2 35 5-39 4-39 (684)
340 cd00395 Tyr_Trp_RS_core cataly 49.2 17 0.00037 27.5 2.6 32 7-39 5-39 (273)
341 PF08026 Antimicrobial_5: Bee 49.0 2.2 4.9E-05 21.5 -1.4 23 9-31 16-38 (39)
342 PLN02293 adenine phosphoribosy 49.0 52 0.0011 23.4 4.9 30 106-135 61-92 (187)
343 TIGR01281 DPOR_bchL light-inde 48.9 43 0.00094 24.8 4.8 33 5-37 2-34 (268)
344 cd00861 ProRS_anticodon_short 48.7 44 0.00096 20.1 4.1 34 5-38 3-38 (94)
345 PRK06835 DNA replication prote 48.7 36 0.00079 26.5 4.4 43 4-46 184-226 (329)
346 TIGR03026 NDP-sugDHase nucleot 48.7 33 0.00072 27.4 4.3 31 5-40 2-32 (411)
347 COG2085 Predicted dinucleotide 48.4 25 0.00053 25.7 3.2 23 21-43 14-36 (211)
348 PRK00771 signal recognition pa 48.4 54 0.0012 26.7 5.4 40 5-44 97-136 (437)
349 PF02702 KdpD: Osmosensitive K 48.3 39 0.00085 24.6 4.1 38 3-40 5-42 (211)
350 COG2210 Peroxiredoxin family p 48.3 51 0.0011 22.3 4.4 39 9-47 9-47 (137)
351 PRK07251 pyridine nucleotide-d 48.2 27 0.00058 28.0 3.7 34 1-39 1-34 (438)
352 cd01143 YvrC Periplasmic bindi 48.1 44 0.00096 23.1 4.5 40 91-137 51-91 (195)
353 TIGR01425 SRP54_euk signal rec 48.1 40 0.00087 27.4 4.6 40 5-44 102-141 (429)
354 PF01266 DAO: FAD dependent ox 48.0 21 0.00046 27.0 3.1 20 21-40 12-31 (358)
355 PLN03050 pyridoxine (pyridoxam 48.0 21 0.00045 26.7 2.8 34 4-40 61-96 (246)
356 TIGR01470 cysG_Nterm siroheme 47.9 34 0.00075 24.6 3.9 35 3-42 9-43 (205)
357 PRK04148 hypothetical protein; 47.9 23 0.0005 23.9 2.8 31 4-40 18-48 (134)
358 PHA02857 monoglyceride lipase; 47.8 45 0.00098 24.5 4.7 35 4-38 25-59 (276)
359 PRK00090 bioD dithiobiotin syn 47.6 99 0.0022 22.1 6.4 29 10-38 7-35 (222)
360 TIGR02329 propionate_PrpR prop 47.6 39 0.00085 28.2 4.6 41 91-137 132-172 (526)
361 PRK09841 cryptic autophosphory 47.5 1.9E+02 0.0042 25.2 15.3 39 4-42 531-571 (726)
362 COG1440 CelA Phosphotransferas 47.5 58 0.0013 20.8 4.4 37 4-40 2-38 (102)
363 PLN02891 IMP cyclohydrolase 47.4 1.1E+02 0.0023 25.8 6.9 38 19-67 34-71 (547)
364 PRK02006 murD UDP-N-acetylmura 47.1 32 0.00069 28.3 4.1 33 2-39 6-38 (498)
365 COG0543 UbiB 2-polyprenylpheno 47.1 32 0.00069 25.6 3.7 37 6-44 110-148 (252)
366 PF13407 Peripla_BP_4: Peripla 47.0 63 0.0014 23.3 5.3 32 106-137 54-89 (257)
367 cd01452 VWA_26S_proteasome_sub 47.0 65 0.0014 23.0 5.1 34 6-39 111-144 (187)
368 TIGR00521 coaBC_dfp phosphopan 47.0 51 0.0011 26.4 5.0 20 21-40 215-234 (390)
369 TIGR02622 CDP_4_6_dhtase CDP-g 46.9 46 0.00099 25.7 4.8 32 4-39 5-36 (349)
370 PRK14489 putative bifunctional 46.9 54 0.0012 25.9 5.2 37 4-40 206-242 (366)
371 TIGR01862 N2-ase-Ialpha nitrog 46.9 22 0.00048 28.9 3.0 28 106-136 386-413 (443)
372 PF03698 UPF0180: Uncharacteri 46.8 21 0.00046 21.8 2.2 22 20-41 10-31 (80)
373 COG1252 Ndh NADH dehydrogenase 46.8 23 0.0005 28.6 3.1 39 1-42 1-39 (405)
374 PRK08939 primosomal protein Dn 46.7 39 0.00083 26.1 4.2 42 5-46 158-199 (306)
375 PRK13609 diacylglycerol glucos 46.4 37 0.00081 26.4 4.2 31 106-136 103-135 (380)
376 cd01124 KaiC KaiC is a circadi 46.3 83 0.0018 21.5 5.7 42 6-47 2-43 (187)
377 cd05014 SIS_Kpsf KpsF-like pro 45.5 65 0.0014 20.6 4.7 36 9-44 52-87 (128)
378 PRK11524 putative methyltransf 45.5 48 0.001 25.1 4.6 41 107-147 207-249 (284)
379 TIGR00640 acid_CoA_mut_C methy 45.5 90 0.0019 20.8 5.6 42 3-44 2-43 (132)
380 TIGR01283 nifE nitrogenase mol 45.4 40 0.00087 27.4 4.4 27 106-135 394-420 (456)
381 PF10657 RC-P840_PscD: Photosy 45.4 42 0.00091 22.2 3.6 40 3-42 46-85 (144)
382 PRK10749 lysophospholipase L2; 45.4 58 0.0013 25.0 5.1 34 6-39 56-89 (330)
383 PRK03094 hypothetical protein; 45.3 24 0.00052 21.5 2.3 21 20-40 10-30 (80)
384 PRK05973 replicative DNA helic 45.3 71 0.0015 23.7 5.3 43 6-48 67-109 (237)
385 cd02067 B12-binding B12 bindin 45.2 49 0.0011 21.2 4.0 35 3-37 50-85 (119)
386 PRK11259 solA N-methyltryptoph 45.2 30 0.00065 26.8 3.5 32 3-39 3-34 (376)
387 COG1763 MobB Molybdopterin-gua 45.2 60 0.0013 22.6 4.6 37 6-42 5-41 (161)
388 PF01316 Arg_repressor: Argini 45.1 13 0.00027 22.1 1.1 21 18-38 20-40 (70)
389 PRK11889 flhF flagellar biosyn 44.9 69 0.0015 26.1 5.4 40 4-43 242-281 (436)
390 TIGR01284 alt_nitrog_alph nitr 44.8 20 0.00043 29.3 2.5 27 106-135 394-420 (457)
391 PRK13054 lipid kinase; Reviewe 44.4 82 0.0018 23.9 5.7 41 1-41 1-41 (300)
392 PRK08849 2-octaprenyl-3-methyl 44.1 30 0.00064 27.2 3.4 34 1-39 1-34 (384)
393 PRK13354 tyrosyl-tRNA syntheta 44.0 31 0.00067 27.8 3.4 33 7-40 39-74 (410)
394 PF09334 tRNA-synt_1g: tRNA sy 43.8 22 0.00049 28.4 2.6 27 15-41 17-46 (391)
395 COG1090 Predicted nucleoside-d 43.8 27 0.00059 26.7 2.9 23 21-43 12-34 (297)
396 PRK09186 flagellin modificatio 43.7 66 0.0014 23.2 5.0 36 1-39 1-36 (256)
397 cd00805 TyrRS_core catalytic c 43.6 31 0.00067 26.0 3.2 34 7-41 6-42 (269)
398 PLN02331 phosphoribosylglycina 43.6 68 0.0015 23.2 4.9 45 92-136 12-57 (207)
399 COG3046 Uncharacterized protei 43.6 33 0.00072 27.8 3.4 26 16-41 51-76 (505)
400 COG0452 Dfp Phosphopantothenoy 43.6 43 0.00093 26.9 4.1 42 3-45 4-45 (392)
401 TIGR03499 FlhF flagellar biosy 43.5 80 0.0017 23.9 5.5 39 5-43 196-236 (282)
402 PRK09361 radB DNA repair and r 43.4 75 0.0016 22.8 5.2 35 6-40 26-60 (225)
403 PRK13236 nitrogenase reductase 43.4 45 0.00097 25.4 4.1 30 11-40 14-43 (296)
404 TIGR01689 EcbF-BcbF capsule bi 43.3 44 0.00095 22.2 3.6 25 19-43 28-52 (126)
405 PLN02775 Probable dihydrodipic 43.3 65 0.0014 24.7 4.9 32 106-137 78-113 (286)
406 PRK06935 2-deoxy-D-gluconate 3 43.3 78 0.0017 23.0 5.3 34 4-40 15-48 (258)
407 KOG1615 Phosphoserine phosphat 43.2 35 0.00075 24.8 3.2 40 89-131 89-129 (227)
408 KOG2585 Uncharacterized conser 43.2 55 0.0012 26.7 4.6 36 3-41 266-303 (453)
409 PRK05802 hypothetical protein; 43.2 40 0.00088 26.1 3.9 37 5-43 174-210 (320)
410 cd01971 Nitrogenase_VnfN_like 43.1 51 0.0011 26.6 4.6 26 107-135 371-396 (427)
411 PF00318 Ribosomal_S2: Ribosom 42.9 8 0.00017 28.0 -0.0 34 106-139 142-177 (211)
412 PRK09545 znuA high-affinity zi 42.8 77 0.0017 24.4 5.3 43 92-137 240-284 (311)
413 PF01738 DLH: Dienelactone hyd 42.7 61 0.0013 23.0 4.6 31 6-36 16-46 (218)
414 PRK10867 signal recognition pa 42.6 66 0.0014 26.2 5.1 40 6-45 103-143 (433)
415 cd06267 PBP1_LacI_sugar_bindin 42.5 82 0.0018 22.4 5.3 32 106-137 54-87 (264)
416 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.2 78 0.0017 20.2 4.7 34 11-44 53-86 (126)
417 PF13378 MR_MLE_C: Enolase C-t 42.1 42 0.0009 21.2 3.3 43 106-148 17-66 (111)
418 PRK07530 3-hydroxybutyryl-CoA 42.1 30 0.00066 26.1 3.0 35 1-40 2-36 (292)
419 PRK08265 short chain dehydroge 42.1 73 0.0016 23.3 5.0 32 5-39 7-38 (261)
420 PF00975 Thioesterase: Thioest 42.0 34 0.00074 24.3 3.2 36 7-42 3-38 (229)
421 COG1435 Tdk Thymidine kinase [ 42.0 1.3E+02 0.0029 21.8 10.5 39 4-42 4-43 (201)
422 PF03796 DnaB_C: DnaB-like hel 42.0 1E+02 0.0023 22.7 5.9 41 6-46 22-63 (259)
423 TIGR03325 BphB_TodD cis-2,3-di 41.9 75 0.0016 23.2 5.1 33 4-39 5-37 (262)
424 PRK15411 rcsA colanic acid cap 41.8 75 0.0016 22.7 4.9 32 106-137 46-86 (207)
425 TIGR03018 pepcterm_TyrKin exop 41.8 84 0.0018 22.3 5.2 39 4-42 35-76 (207)
426 PF07881 Fucose_iso_N1: L-fuco 41.7 1.2E+02 0.0027 21.3 6.0 67 58-129 4-74 (171)
427 PRK08558 adenine phosphoribosy 41.7 52 0.0011 24.4 4.1 29 106-134 110-140 (238)
428 PF05762 VWA_CoxE: VWA domain 41.6 84 0.0018 22.8 5.2 36 5-40 152-188 (222)
429 PRK13869 plasmid-partitioning 41.6 60 0.0013 26.1 4.7 36 5-40 122-159 (405)
430 COG1233 Phytoene dehydrogenase 41.5 48 0.001 27.2 4.3 33 1-38 1-33 (487)
431 PRK12826 3-ketoacyl-(acyl-carr 41.4 79 0.0017 22.6 5.1 27 12-40 13-39 (251)
432 KOG0332 ATP-dependent RNA heli 41.4 27 0.00058 28.1 2.6 24 19-42 342-365 (477)
433 PRK14974 cell division protein 41.3 73 0.0016 25.0 5.0 39 5-43 142-180 (336)
434 PRK10566 esterase; Provisional 41.3 62 0.0013 23.3 4.5 35 6-40 29-63 (249)
435 PRK10427 putative PTS system f 41.2 92 0.002 20.3 4.8 36 4-39 3-41 (114)
436 TIGR00041 DTMP_kinase thymidyl 41.1 1.1E+02 0.0024 21.2 5.7 41 1-41 1-41 (195)
437 TIGR01860 VNFD nitrogenase van 41.1 38 0.00082 27.7 3.6 25 106-133 396-420 (461)
438 cd00806 TrpRS_core catalytic c 41.0 32 0.00069 26.1 3.0 34 8-41 6-41 (280)
439 PLN02939 transferase, transfer 41.0 43 0.00094 30.2 4.1 39 3-41 481-525 (977)
440 TIGR01285 nifN nitrogenase mol 41.0 39 0.00085 27.4 3.6 35 106-140 235-270 (432)
441 TIGR01743 purR_Bsub pur operon 41.0 66 0.0014 24.4 4.6 31 106-136 127-159 (268)
442 TIGR00355 purH phosphoribosyla 40.9 1.3E+02 0.0028 25.2 6.5 38 18-66 11-48 (511)
443 COG0763 LpxB Lipid A disacchar 40.8 81 0.0017 25.3 5.2 41 93-136 74-119 (381)
444 PRK14573 bifunctional D-alanyl 40.8 38 0.00082 29.8 3.7 33 1-37 2-34 (809)
445 TIGR00725 conserved hypothetic 40.7 54 0.0012 22.6 3.8 32 4-35 2-35 (159)
446 PRK09444 pntB pyridine nucleot 40.7 42 0.00091 27.5 3.7 38 3-40 306-346 (462)
447 PF00590 TP_methylase: Tetrapy 40.6 74 0.0016 22.4 4.7 42 4-45 77-120 (210)
448 TIGR00730 conserved hypothetic 40.5 64 0.0014 22.8 4.3 34 5-38 2-39 (178)
449 KOG1838 Alpha/beta hydrolase [ 40.4 91 0.002 25.3 5.5 38 4-41 126-164 (409)
450 PRK14494 putative molybdopteri 40.3 65 0.0014 23.8 4.4 33 6-38 4-36 (229)
451 PRK10310 PTS system galactitol 40.2 91 0.002 19.3 4.9 39 2-40 1-40 (94)
452 COG1663 LpxK Tetraacyldisaccha 40.2 50 0.0011 26.0 3.9 31 9-39 55-85 (336)
453 PF02844 GARS_N: Phosphoribosy 40.0 59 0.0013 20.7 3.6 28 106-133 61-91 (100)
454 PRK12429 3-hydroxybutyrate deh 40.0 76 0.0017 22.8 4.8 33 5-40 5-37 (258)
455 PRK06067 flagellar accessory p 39.9 1.3E+02 0.0029 21.7 6.1 41 6-46 28-68 (234)
456 PRK08309 short chain dehydroge 39.8 53 0.0011 23.0 3.8 34 106-139 74-115 (177)
457 COG1028 FabG Dehydrogenases wi 39.8 86 0.0019 22.5 5.1 37 3-42 4-40 (251)
458 cd01977 Nitrogenase_VFe_alpha 39.7 33 0.00072 27.5 3.1 34 95-134 349-382 (415)
459 TIGR02990 ectoine_eutA ectoine 39.7 1.6E+02 0.0034 21.9 8.8 101 17-135 105-213 (239)
460 TIGR02845 spore_V_AD stage V s 39.7 1.4E+02 0.003 23.5 6.2 50 106-155 70-122 (327)
461 cd05017 SIS_PGI_PMI_1 The memb 39.7 1E+02 0.0022 19.7 6.6 33 10-42 49-81 (119)
462 PF02606 LpxK: Tetraacyldisacc 39.6 45 0.00098 26.0 3.7 31 9-39 43-73 (326)
463 PRK07208 hypothetical protein; 39.6 35 0.00077 27.6 3.2 34 1-39 2-35 (479)
464 PRK15427 colanic acid biosynth 39.5 66 0.0014 25.6 4.7 37 5-42 2-40 (406)
465 TIGR01744 XPRTase xanthine pho 39.5 70 0.0015 22.8 4.4 32 106-137 49-82 (191)
466 PRK07308 flavodoxin; Validated 39.4 78 0.0017 21.1 4.5 39 1-41 1-40 (146)
467 PRK09213 pur operon repressor; 39.4 72 0.0016 24.2 4.6 31 106-136 129-161 (271)
468 TIGR03087 stp1 sugar transfera 39.3 31 0.00068 27.1 2.8 29 12-41 12-40 (397)
469 COG0771 MurD UDP-N-acetylmuram 39.3 64 0.0014 26.4 4.6 35 3-42 7-41 (448)
470 TIGR03274 methan_mark_7 putati 39.2 44 0.00096 25.4 3.3 33 6-38 73-106 (302)
471 PRK08334 translation initiatio 39.2 45 0.00099 26.4 3.6 16 121-136 265-280 (356)
472 PRK05579 bifunctional phosphop 39.2 35 0.00075 27.4 3.0 20 21-40 218-237 (399)
473 PRK06603 enoyl-(acyl carrier p 39.1 78 0.0017 23.2 4.8 34 4-38 8-41 (260)
474 cd06167 LabA_like LabA_like pr 39.0 44 0.00095 22.2 3.2 30 6-40 103-132 (149)
475 PRK06079 enoyl-(acyl carrier p 39.0 65 0.0014 23.5 4.4 33 4-38 7-40 (252)
476 cd00550 ArsA_ATPase Oxyanion-t 38.9 63 0.0014 24.0 4.3 36 7-42 4-39 (254)
477 PF03446 NAD_binding_2: NAD bi 38.8 41 0.00088 23.0 3.0 31 4-39 2-32 (163)
478 PRK09435 membrane ATPase/prote 38.7 1E+02 0.0022 24.2 5.4 39 5-43 58-96 (332)
479 PRK01906 tetraacyldisaccharide 38.7 51 0.0011 25.9 3.8 31 9-39 64-94 (338)
480 PRK05708 2-dehydropantoate 2-r 38.7 45 0.00097 25.5 3.5 33 3-40 2-34 (305)
481 PF07015 VirC1: VirC1 protein; 38.7 67 0.0015 23.8 4.2 35 11-45 10-44 (231)
482 PF03721 UDPG_MGDP_dh_N: UDP-g 38.6 41 0.00089 23.8 3.1 32 5-41 2-33 (185)
483 COG3433 Aryl carrier domain [S 38.5 18 0.00038 21.6 1.0 20 18-37 32-51 (74)
484 PRK00941 acetyl-CoA decarbonyl 38.4 40 0.00087 29.6 3.4 33 106-138 301-335 (781)
485 PF13614 AAA_31: AAA domain; P 38.4 74 0.0016 21.1 4.3 35 10-44 8-42 (157)
486 cd00532 MGS-like MGS-like doma 38.4 68 0.0015 20.4 3.9 86 16-134 10-105 (112)
487 cd01122 GP4d_helicase GP4d_hel 38.3 1E+02 0.0023 22.7 5.4 42 5-46 32-74 (271)
488 PF02142 MGS: MGS-like domain 38.2 42 0.0009 20.7 2.8 85 20-133 2-95 (95)
489 cd01020 TroA_b Metal binding p 38.2 1E+02 0.0023 22.9 5.4 39 93-134 195-238 (264)
490 PRK08181 transposase; Validate 38.1 81 0.0018 23.8 4.7 38 4-41 107-144 (269)
491 PRK12726 flagellar biosynthesi 38.0 1.2E+02 0.0025 24.7 5.7 39 6-44 209-247 (407)
492 COG1611 Predicted Rossmann fol 38.0 67 0.0014 23.3 4.1 29 3-31 14-47 (205)
493 PRK07577 short chain dehydroge 38.0 1.1E+02 0.0024 21.7 5.3 36 1-40 1-36 (234)
494 PRK12404 stage V sporulation p 37.9 1.4E+02 0.0031 23.4 6.0 35 106-140 74-111 (334)
495 PRK08304 stage V sporulation p 37.9 1.3E+02 0.0029 23.6 5.9 50 106-155 76-128 (337)
496 TIGR03772 anch_rpt_subst ancho 37.8 90 0.0019 25.9 5.2 41 92-135 408-452 (479)
497 PF00205 TPP_enzyme_M: Thiamin 37.8 53 0.0012 21.6 3.4 41 95-137 3-48 (137)
498 COG0451 WcaG Nucleoside-diphos 37.7 55 0.0012 24.4 3.9 27 13-41 8-34 (314)
499 PRK12747 short chain dehydroge 37.7 92 0.002 22.5 5.0 33 3-38 3-35 (252)
500 PRK06914 short chain dehydroge 37.6 1.1E+02 0.0024 22.4 5.5 36 1-40 1-36 (280)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=99.94 E-value=6.6e-26 Score=180.20 Aligned_cols=146 Identities=31% Similarity=0.623 Sum_probs=115.7
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLF 82 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 82 (160)
+.||+++|+|++||++||++||+.|+.||++||+++++.+..++.+... ..++++++.+|++.+.+. ..++..+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~~-~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDDP-PRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCCc-cccHHHHH
Confidence 4699999999999999999999999999999999999987665543211 113699999998764321 12343444
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhHHhcC
Q 040291 83 EKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLIDDG 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~ 155 (160)
..+...+.+.++++++++... .+++|||+|.+++|+.++|+++|||.+.|+++++..++++++++.+...+
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 555456788899999887431 35699999999999999999999999999999999999998888765554
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.94 E-value=7e-26 Score=179.94 Aligned_cols=145 Identities=21% Similarity=0.407 Sum_probs=114.5
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCC-CcccHHHH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWE-DRNDFGKL 81 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~~~ 81 (160)
+.||+++|+|++||++||++||+.|+.||+.|||++|+.+.... . ....++++..+|++++++. +......+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 56999999999999999999999999999999999998764211 0 1113699999998876531 22223345
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhHHhc
Q 040291 82 FEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLIDD 154 (160)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~ 154 (160)
+..+.+.+.+.++++++++....+.+++|||+|.+++|+.++|+++|||.+.|++++++.++++++++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 152 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYAN 152 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhc
Confidence 5556566777888888886432224679999999999999999999999999999999999999988777654
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.94 E-value=1.9e-25 Score=177.12 Aligned_cols=140 Identities=24% Similarity=0.507 Sum_probs=111.1
Q ss_pred CC--CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCC--CCcc
Q 040291 1 MN--RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPW--EDRN 76 (160)
Q Consensus 1 m~--~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~~~ 76 (160)
|+ +.||+++|+|++||++||++|||.|+.+|+.|||++|+.+..++... ..++++++.+|++++++ +...
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCccccccc
Confidence 55 36899999999999999999999999999999999999765444221 12469999999888763 2223
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHc
Q 040291 77 DFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFH 147 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~ 147 (160)
+...++..+.+.+.+.++++++++.... .+++|||+|.|++|+.++|+++|||.+.|++++++.++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQSTD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhccC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 3445666666677888999998864321 234999999999999999999999999999999888877654
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.94 E-value=3.2e-25 Score=176.03 Aligned_cols=145 Identities=25% Similarity=0.453 Sum_probs=113.3
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCC-hhhHHhhhccCCCCCCCeeeeecCCCCCCCC-C-cc
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYD-HKRIMESLEGKNDLGEQIRLVSIPDGMEPWE-D-RN 76 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~-~~ 76 (160)
|++.||+++|+|++||++||++||+.|++ +|+.|||++|+.+ .+.+.+. ....++++++.++++++++. . ..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~----~~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN----HNNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc----CCCCCCEEEEEcCCCCCCccccccc
Confidence 88899999999999999999999999996 6999999999854 2221111 01113699999998776542 1 23
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhh
Q 040291 77 DFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPK 150 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~ 150 (160)
+....+..+...+.+.++++++++.... .+++|||+|.+++|+.++|+++|||.+.|++++++.++++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 3444455555677888999998865321 356999999999999999999999999999999999999988753
No 5
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.93 E-value=4.6e-25 Score=176.13 Aligned_cols=143 Identities=26% Similarity=0.490 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCC-CcccHH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWE-DRNDFG 79 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~ 79 (160)
+.||+++|+|++||++||++||++|++| ||+||+++++.+...+.+.. ..++++|+.+|++.+++. ...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCCCCCCccccccCHH
Confidence 5799999999999999999999999999 99999999998876665421 124799999987654431 123344
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhHHhc
Q 040291 80 KLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLIDD 154 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~ 154 (160)
.++..+.+.+.+.++++++++. .++||||+|.+++|+..+|+++|||++.|+++++..++.+++++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~ 155 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQN 155 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhc
Confidence 4455555556677888887753 3689999999999999999999999999999999999999888766543
No 6
>PLN00164 glucosyltransferase; Provisional
Probab=99.93 E-value=1e-24 Score=174.69 Aligned_cols=147 Identities=20% Similarity=0.373 Sum_probs=111.4
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCC----CEEEEEeCCCChh----hHHhhhccCCCCCCCeeeeecCCCCCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQG----FRVTFVNTDYDHK----RIMESLEGKNDLGEQIRLVSIPDGMEPW 72 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 72 (160)
|.++||+++|+|++||++||++||+.|+.|| +.|||++++.+.. ++............+++++.+|++..+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8899999999999999999999999999997 8999999876422 2322111100111259999998753221
Q ss_pred CCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhHH
Q 040291 73 EDRNDFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLI 152 (160)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~ 152 (160)
...+...++..+.+.+.+.++++++++. .+++|||+|.+++|+.++|+++|||.+.|++++++.++++++++.+.
T Consensus 81 -~~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 -DAAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -ccccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1112334444455677778888887751 36799999999999999999999999999999999999999988653
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=99.93 E-value=1.1e-24 Score=173.64 Aligned_cols=145 Identities=28% Similarity=0.462 Sum_probs=109.8
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC----CCCCCCC-Cccc
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP----DGMEPWE-DRND 77 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~-~~~~ 77 (160)
+.||+++|+|++||++||++||+.|+.||+.|||++|+.+..++.+... ...++++++.+| ++++++. ...+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccccc
Confidence 5699999999999999999999999999999999999987655532100 112358888887 4555431 1112
Q ss_pred H----HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhHHh
Q 040291 78 F----GKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLID 153 (160)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~ 153 (160)
. ..++....+.+.+.+++++++ .+++|||+|.+++|+.++|+++|||++.|+++++..++++++.+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 2 123334445667777888765 368999999999999999999999999999999999999876655544
Q ss_pred cCC
Q 040291 154 DGI 156 (160)
Q Consensus 154 ~~~ 156 (160)
+|.
T Consensus 157 ~~~ 159 (472)
T PLN02670 157 GGD 159 (472)
T ss_pred ccc
Confidence 443
No 8
>PLN02555 limonoid glucosyltransferase
Probab=99.93 E-value=1.7e-24 Score=172.88 Aligned_cols=146 Identities=25% Similarity=0.482 Sum_probs=111.0
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHh--hhccC--CC-CCCCeeeeecCCCCCCCC-Ccc
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIME--SLEGK--ND-LGEQIRLVSIPDGMEPWE-DRN 76 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~--~~~~~--~~-~~~~i~~~~l~~~~~~~~-~~~ 76 (160)
++||+++|+|++||++||++||+.|+.||..|||++|+.+..++.+ ..... .. ....++|..+|++++++. ...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 5899999999999999999999999999999999999976654432 11000 00 012367776777776542 122
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchh
Q 040291 77 DFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIP 149 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 149 (160)
+...++..+...+.+.++++++++.... .+++|||+|.+++|+.++|+++|||.++|++++++.++++++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 3444555555567788999998764322 34599999999999999999999999999999999999998875
No 9
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.92 E-value=3.3e-24 Score=171.99 Aligned_cols=147 Identities=18% Similarity=0.348 Sum_probs=104.0
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCChhhHH--hh-hccCC-CCCCCeeeeecCCCCCCCCCcc
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQG--FRVTFVNTDYDHKRIM--ES-LEGKN-DLGEQIRLVSIPDGMEPWEDRN 76 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~~~~~~~~~~~--~~-~~~~~-~~~~~i~~~~l~~~~~~~~~~~ 76 (160)
|.||+++|+|++||++||++|||.|+.|| ..|||++|+.+..+.. .. ..... ...++++++.+|++.+......
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 78999999999999999999999999998 8999999987643211 00 00000 0123699999987643211111
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcC----CCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhHH
Q 040291 77 DFGKLFEKVLQVMPGKLEELIEDINSR----EDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLI 152 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~ 152 (160)
.+.. +...+.+.+++.++++... .+.+++|||+|.+++|+.++|+++|||++.|++++++.+++++|++.+.
T Consensus 82 ---~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 ---TFQS-YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred ---HHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 2222 2233444555555554211 1123589999999999999999999999999999999999999998764
Q ss_pred h
Q 040291 153 D 153 (160)
Q Consensus 153 ~ 153 (160)
.
T Consensus 158 ~ 158 (481)
T PLN02554 158 D 158 (481)
T ss_pred c
Confidence 3
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.92 E-value=4.4e-24 Score=170.74 Aligned_cols=139 Identities=25% Similarity=0.395 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCC----CCCCCC-Cccc
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPD----GMEPWE-DRND 77 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~-~~~~ 77 (160)
++||+++|+|++||++||++|||.|+.+|+.|||++|+.+..++.+... ..++++++.+|. +++++. ...+
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 6899999999999999999999999999999999999988766543211 113577766542 233321 1111
Q ss_pred ----HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchh
Q 040291 78 ----FGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIP 149 (160)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 149 (160)
....+......+.+.+.++++++ . .+++|||+|.+++|+.++|+++|||++.||+++++.++++++++
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~ 156 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLW 156 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHh
Confidence 11122223334555666666653 1 46799999999999999999999999999999999999998875
No 11
>PLN02534 UDP-glycosyltransferase
Probab=99.92 E-value=7.7e-24 Score=169.47 Aligned_cols=143 Identities=26% Similarity=0.501 Sum_probs=104.0
Q ss_pred CC-CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC-----CCCCCC-C
Q 040291 1 MN-RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP-----DGMEPW-E 73 (160)
Q Consensus 1 m~-~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~~~~~-~ 73 (160)
|+ +.||+++|+|++||++||++||+.|++||+.|||++|+.+..++.............++|+.+| ++++++ +
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 44 4699999999999999999999999999999999999987655543221100111248898887 466544 1
Q ss_pred Ccc-----cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHc
Q 040291 74 DRN-----DFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFH 147 (160)
Q Consensus 74 ~~~-----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~ 147 (160)
... .....+......+.+.+++++++. +.+++|||+|.+++|+.++|+++|||.++|++++++.++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 111 111112222334566777777653 1468999999999999999999999999999999998887654
No 12
>PLN03004 UDP-glycosyltransferase
Probab=99.92 E-value=9e-24 Score=167.65 Aligned_cols=149 Identities=15% Similarity=0.308 Sum_probs=106.5
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCC--CEEEE--EeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCC-C--
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQG--FRVTF--VNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPW-E-- 73 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~-- 73 (160)
|++.||+++|+|++||++||++||+.|+.|| +.||+ +++..+...+.+.........++++++.+|++.+.. .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 8899999999999999999999999999998 55555 444433222211110000112369999998765321 1
Q ss_pred CcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhH
Q 040291 74 DRNDFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKL 151 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l 151 (160)
...+....+..+.+.+.+.++++++++.. +.+++|||+|.+++|+.++|+++|||.+.|++++++.+++++|+|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR--NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC--CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 11122223333445677788888887632 13569999999999999999999999999999999999999998754
No 13
>PLN02210 UDP-glucosyl transferase
Probab=99.92 E-value=7.3e-24 Score=168.81 Aligned_cols=136 Identities=21% Similarity=0.429 Sum_probs=105.4
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHH--HHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQC--LAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGK 80 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 80 (160)
+.||+++|+|++||++|+++||++ |++||++|||++|+.+.+++.... .....+++..++++++++.. .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 569999999999999999999999 569999999999998765542211 11235788777777665421 23334
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchh
Q 040291 81 LFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIP 149 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 149 (160)
++..+.+.+.+.+++++++ .++||||+|.+++|+..+|+++|||.+.||++++..++++++++
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 4555555555666666654 47999999999999999999999999999999999999888764
No 14
>PLN02207 UDP-glycosyltransferase
Probab=99.92 E-value=1.4e-23 Score=167.14 Aligned_cols=151 Identities=18% Similarity=0.332 Sum_probs=106.1
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCCh-hhHHhhhccCCCCCCCeeeeecCCCCC-CC-CCc
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQG--FRVTFVNTDYDH-KRIMESLEGKNDLGEQIRLVSIPDGME-PW-EDR 75 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~-~~-~~~ 75 (160)
|++.|++++|+|++||++||++||+.|+.|| ..|||++++.+. ..+...........++++|+.+|+... .. ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8899999999999999999999999999998 999999998764 222111110001123699999986432 11 111
Q ss_pred ccHHHHHHHHHHhccH----HHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhH
Q 040291 76 NDFGKLFEKVLQVMPG----KLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKL 151 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l 151 (160)
.+....+..+.+.+.+ .++++++++.. .+.+++|||+|.+++|+.++|+++|||.+.|+++++..++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLAL-DGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhcc-CCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 2333333223344533 34555544321 113459999999999999999999999999999999999999988765
Q ss_pred H
Q 040291 152 I 152 (160)
Q Consensus 152 ~ 152 (160)
.
T Consensus 160 ~ 160 (468)
T PLN02207 160 H 160 (468)
T ss_pred c
Confidence 4
No 15
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.91 E-value=1.7e-23 Score=166.98 Aligned_cols=141 Identities=21% Similarity=0.343 Sum_probs=106.7
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCC----CCCCCCCcc
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLA-KQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPD----GMEPWEDRN 76 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~~~ 76 (160)
.++||+++|+|++||++||++|||.|+ ++|++|||++|+.+..++.+... ..++++++.+|+ ++++. . .
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~-~-~ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDP-S-A 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCC-C-c
Confidence 368999999999999999999999998 78999999999987654422211 113688888874 33211 1 1
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchhhHH
Q 040291 77 DFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLI 152 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~ 152 (160)
+....+....+.+.+.++++++++. .+++|||+|.+++|+.++|+++|||++.|+++++..++++.++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 2222222333456677888887642 46899999999999999999999999999999999999888887553
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.91 E-value=3.3e-23 Score=166.33 Aligned_cols=140 Identities=29% Similarity=0.545 Sum_probs=95.4
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCC----CeeeeecC---CCCCCCC-C
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGE----QIRLVSIP---DGMEPWE-D 74 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~---~~~~~~~-~ 74 (160)
+.||+++|+|++||++|+++||++|++||++|||++++.+..++.+.........+ .+....+| ++++.+. .
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 56999999999999999999999999999999999999887655433211000011 34445555 3444321 1
Q ss_pred c--------ccHHHHHHHHH---HhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHH
Q 040291 75 R--------NDFGKLFEKVL---QVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVA 143 (160)
Q Consensus 75 ~--------~~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~ 143 (160)
. .....+...+. ..+.+.++++++. .++||||+|.+++|+..+|+++|||.++||+++++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 0 01112222232 2223333433332 47899999999999999999999999999999998877
Q ss_pred HHHch
Q 040291 144 LLFHI 148 (160)
Q Consensus 144 ~~~~~ 148 (160)
.++++
T Consensus 159 ~~~~~ 163 (482)
T PLN03007 159 ASYCI 163 (482)
T ss_pred HHHHH
Confidence 76643
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.91 E-value=6.4e-23 Score=164.34 Aligned_cols=151 Identities=16% Similarity=0.296 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCC---CEEEEEeCCCChh-hHHhhhccCCCCCCCeeeeecCCCCCC-CCC-
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQG---FRVTFVNTDYDHK-RIMESLEGKNDLGEQIRLVSIPDGMEP-WED- 74 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rG---h~Vt~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~~~~-~~~- 74 (160)
|++.||+++|+|++||++||++|||.|+.|| +.||++++..... .............++|+|+.+|++..+ +.+
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 7899999999999999999999999999999 3567777553321 111111000011246999999865311 101
Q ss_pred -cccHHHHHHHHHHhccHHHHHHHHHHhcC---CCC-CccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchh
Q 040291 75 -RNDFGKLFEKVLQVMPGKLEELIEDINSR---EDE-KLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIP 149 (160)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~-~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 149 (160)
.......+..+...+.+.++++++++... .+. +++|||+|.+++|+.++|+++|||.+.|++++++.+++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11121222233345556677777765321 112 4699999999999999999999999999999999999999887
Q ss_pred hH
Q 040291 150 KL 151 (160)
Q Consensus 150 ~l 151 (160)
..
T Consensus 161 ~~ 162 (475)
T PLN02167 161 ER 162 (475)
T ss_pred Hh
Confidence 54
No 18
>PLN00414 glycosyltransferase family protein
Probab=99.91 E-value=4.4e-23 Score=163.82 Aligned_cols=136 Identities=26% Similarity=0.405 Sum_probs=97.5
Q ss_pred CC-CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeec--C--CCCCCCC-C
Q 040291 1 MN-RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSI--P--DGMEPWE-D 74 (160)
Q Consensus 1 m~-~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~-~ 74 (160)
|. ++||+++|+|++||++||++|||.|++||++|||++++.+..++.... ...+++++..+ | ++++++. .
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcCCCCCcccc
Confidence 44 569999999999999999999999999999999999988765553211 11135777544 3 4555431 1
Q ss_pred cccH----HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHc
Q 040291 75 RNDF----GKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFH 147 (160)
Q Consensus 75 ~~~~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~ 147 (160)
..+. ...+......+.+.++++++. .++||||+|. ++|+.++|+++|||++.|++++++.++++++
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 1111 111122222344445555543 4679999995 8999999999999999999999999999877
No 19
>PLN03015 UDP-glucosyl transferase
Probab=99.91 E-value=8e-23 Score=162.55 Aligned_cols=148 Identities=20% Similarity=0.282 Sum_probs=108.6
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCChhhHH-hhhccCCCCCCCeeeeecCCCCCCC-CCc-c
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYDHKRIM-ESLEGKNDLGEQIRLVSIPDGMEPW-EDR-N 76 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~-~~~-~ 76 (160)
|.++||+++|+|++||++||++||+.|++| |..|||+++......+. ...........+++++.+|+...++ ... .
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 788999999999999999999999999987 99999999886554321 1100000011258999888532211 010 1
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCc-cEEEccchHHHHHHHHchhhHH
Q 040291 77 DFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVR-GALFWPSSAASVALLFHIPKLI 152 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP-~i~~~~~~~~~~~~~~~~~~l~ 152 (160)
+....+....+.+.+.++++++++. .+++|||+|.+++|+.++|+++||| .+.|++++++.+++++|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 2322233344577788999998753 3679999999999999999999999 6999999999998999988654
No 20
>PLN02208 glycosyltransferase family protein
Probab=99.90 E-value=7.7e-23 Score=162.24 Aligned_cols=137 Identities=25% Similarity=0.441 Sum_probs=97.9
Q ss_pred CC-CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC----CCCCCCC-C
Q 040291 1 MN-RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP----DGMEPWE-D 74 (160)
Q Consensus 1 m~-~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~-~ 74 (160)
|| ++||+++|+|++||++|+++||+.|++||++|||+++..+..++.+.. ....++++..++ ++++++. .
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCccCCCCCccc
Confidence 66 469999999999999999999999999999999999987766553311 111246665543 3444431 1
Q ss_pred cccHH----HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHchh
Q 040291 75 RNDFG----KLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFHIP 149 (160)
Q Consensus 75 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 149 (160)
..+.. ..+....+.+.+.+++++++ .++||||+| +++|+.++|+++|||++.||+++++.++ +++++
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC
Confidence 11221 12222233445556666654 468999999 6899999999999999999999998765 66665
No 21
>PLN02764 glycosyltransferase family protein
Probab=99.89 E-value=5.6e-22 Score=157.23 Aligned_cols=136 Identities=25% Similarity=0.371 Sum_probs=100.1
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC--CCCCCC-CCccc--
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP--DGMEPW-EDRND-- 77 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~-~~~~~-- 77 (160)
+.||+++|+|++||++||++||+.|+.||+.|||++|+.+...+.+ .. .....-.+++.++| ++++++ +...+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~-~~-~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEH-LN-LFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcc-cc-cCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 6899999999999999999999999999999999999987654432 10 00001126677777 565544 21111
Q ss_pred --HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHHHHc
Q 040291 78 --FGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVALLFH 147 (160)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~ 147 (160)
....+....+.+.+.+++++++ .++||||+|. ++|+.++|+++|||++.|++++++.++++++
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~ 147 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV 147 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc
Confidence 1112222334556778888876 3579999995 8999999999999999999999999988864
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.80 E-value=2.7e-19 Score=140.57 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=92.1
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCC----CC-----
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPW----ED----- 74 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~----~~----- 74 (160)
+||+++++|+.||++|++.||++|++|||+|+|++++.+...+++ .|++|..+++..... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 599999999999999999999999999999999999987766654 588888887532211 00
Q ss_pred ---cccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchH
Q 040291 75 ---RNDFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSA 139 (160)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~ 139 (160)
..........+.+.....++++++.+.. .++||||+|.+..++..+|+++|||++.+++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 0011122233333444455555555432 6899999999889899999999999999988764
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.75 E-value=9.6e-18 Score=131.62 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=85.9
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCC-C-c---ccHHHHHH
Q 040291 9 LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWE-D-R---NDFGKLFE 83 (160)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~-~---~~~~~~~~ 83 (160)
+.+|+.||++|++.||++|++|||+||+++++.+.+.+.+ .|+++..+++...... . . .+......
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA---------AGAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH---------cCCEEEecCCcCccccccccccCcchHHHHH
Confidence 3579999999999999999999999999999998877765 5888888875432210 0 0 22333333
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccch
Q 040291 84 KVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSS 138 (160)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~ 138 (160)
.+...+...+.++.+.+.+ .++||||+|.++.|+..+|+++|||+|.+.+..
T Consensus 72 ~~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 3433333344444444332 589999999998999999999999999986543
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.60 E-value=3e-16 Score=106.29 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=77.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKV 85 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 85 (160)
|++++.++.||++|++.|+++|.+|||+|++.+++.+.+.+++ .|++|++++.+ ................
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~---------~Gl~~~~~~~~-~~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA---------AGLEFVPIPGD-SRLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH---------TT-EEEESSSC-GGGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc---------cCceEEEecCC-cCcCcccchhhhhhhH
Confidence 6899999999999999999999999999999999999888754 58999998754 0110000011111000
Q ss_pred HH---hccHHHHHHHHHHhc-----CC-CCCccEEEecCCCccHHHHHHHhCCccEEEccchH
Q 040291 86 LQ---VMPGKLEELIEDINS-----RE-DEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSA 139 (160)
Q Consensus 86 ~~---~~~~~~~~ll~~l~~-----~~-~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~ 139 (160)
.+ ... ...+.+++... .. ....|+++.+.....+..+|+++|||++.....+.
T Consensus 71 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 71 ARLIRGLE-EAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHH-HHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHHhhhhh-HHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00 111 11122222110 01 12567888888777888999999999999766543
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.35 E-value=1.6e-12 Score=104.94 Aligned_cols=147 Identities=23% Similarity=0.369 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCC----CCCCeeeeecCCCCCCCCCcc--
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKND----LGEQIRLVSIPDGMEPWEDRN-- 76 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~l~~~~~~~~~~~-- 76 (160)
+.|++++++|++||++|+.++|++|++|||+||++++.......... ..... ......+...+++++......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 46899999999999999999999999999999999998765432210 00000 000111111111121111000
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhC-CccEEEccchHHHHHHHHchhh
Q 040291 77 DFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMN-VRGALFWPSSAASVALLFHIPK 150 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lg-iP~i~~~~~~~~~~~~~~~~~~ 150 (160)
........+...+...+++....+......++||+|+|.+..|...++.+.+ |+...+++.++...++..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 1111123333444444555443332222234999999999888888887775 9999999999988877766553
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.30 E-value=2.2e-11 Score=98.70 Aligned_cols=127 Identities=14% Similarity=0.295 Sum_probs=76.8
Q ss_pred CCeEEEE-cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCC----CC---
Q 040291 3 RPHVLVL-PIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPW----ED--- 74 (160)
Q Consensus 3 ~~~i~~~-~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~----~~--- 74 (160)
..+|+.+ |.++.||+.-+.+++++|++|||+||++++..... .... ...+++...++...+.. ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 3567755 88999999999999999999999999998764211 1000 01355555443110000 00
Q ss_pred --c-c---cHHH----HHHHHHHhc-----cHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHh-CCccEEEccch
Q 040291 75 --R-N---DFGK----LFEKVLQVM-----PGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKM-NVRGALFWPSS 138 (160)
Q Consensus 75 --~-~---~~~~----~~~~~~~~~-----~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~l-giP~i~~~~~~ 138 (160)
. . +... ....+.+.| .+.+.+++++ .+.+||++|+|.+..|+..+|+++ ++|.|.+++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~----~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN----KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc----CCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 0 0 0000 111112222 2333444431 125899999999988888899999 99988887754
Q ss_pred HH
Q 040291 139 AA 140 (160)
Q Consensus 139 ~~ 140 (160)
..
T Consensus 169 ~~ 170 (507)
T PHA03392 169 GL 170 (507)
T ss_pred Cc
Confidence 43
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.12 E-value=5.5e-13 Score=107.80 Aligned_cols=122 Identities=25% Similarity=0.369 Sum_probs=60.0
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCC--C-cc----
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWE--D-RN---- 76 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~--~-~~---- 76 (160)
.||+++|. +.||+.++..++++|++|||+||++++.... .+... ...++++..++.+.+..+ . ..
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHH
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 47888884 7899999999999999999999999885422 12111 124677766665432211 0 00
Q ss_pred c----------HHHHHHH-------HHHhccHHH--HHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 77 D----------FGKLFEK-------VLQVMPGKL--EELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 77 ~----------~~~~~~~-------~~~~~~~~~--~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
. ....+.. ....|...+ .++++.+++ .++|++|+|.+.+|+..+|+.+|+|.+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 0 1111111 111221111 122223332 4799999999999999999999999987654
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.04 E-value=6e-10 Score=88.17 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCC--CC-cccH-
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPW--ED-RNDF- 78 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~-~~~~- 78 (160)
++||+++..|..||++|.+.||++|.+|||+|++++++.+.+.+++ .++.|..++....+. .+ ..+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~---------ag~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA---------AGLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH---------hCcceeeccccCChhhhhhhhhhcc
Confidence 4799999999999999999999999999999999999999988876 467777665421111 10 1111
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 79 GKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
..+.. ..........++++-+.+ ..+|.++.|.-.+.+ .++...++|++....
T Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 124 (406)
T COG1819 72 KSFRR-LLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINV 124 (406)
T ss_pred chhHH-HhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhh
Confidence 11111 111222223333333332 456777766554433 566666666665433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.91 E-value=2.7e-08 Score=75.91 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=71.7
Q ss_pred CeEEEEcCC-CCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCC-CCCCCCcccHHHH
Q 040291 4 PHVLVLPIP-AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDG-MEPWEDRNDFGKL 81 (160)
Q Consensus 4 ~~i~~~~~p-~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~ 81 (160)
+||++...+ |.||+.-.+.|+++| |||+|+|++.....+.+.+ .+....+++- ........+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 577776644 889999999999999 6999999998765433322 2344444321 1111111111111
Q ss_pred HHHH---HHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHH
Q 040291 82 FEKV---LQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 82 ~~~~---~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~ 140 (160)
.... .......++++.+.+.. .+||+||+|. .+.+..+|+..|||++.+......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 1111 11112234444444443 5899999994 444667899999999987665433
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.82 E-value=6.2e-08 Score=74.44 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=66.8
Q ss_pred eEEE-EcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCee-eeecCC-CCCCCCCcccHHHH
Q 040291 5 HVLV-LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIR-LVSIPD-GMEPWEDRNDFGKL 81 (160)
Q Consensus 5 ~i~~-~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~-~~~~~~~~~~~~~~ 81 (160)
||++ +...|.||+.|.+.++++|.+ ||+|+++++......+.. .++. +...|. .........+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~---------~~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK---------YGFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh---------hcCcceeccCCceEeecCCcCcHHHH
Confidence 4555 445666999999999999999 999999987763322222 1232 222221 00000000112111
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccc
Q 040291 82 FEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 137 (160)
...........+.+..+.+++ .+||+||+| +-+.+..+|+.+|||.+.+..+
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQ 122 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecc
Confidence 110001101223333333333 689999999 5566678999999999976553
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.62 E-value=6.7e-07 Score=69.70 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=71.7
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh-HHhhhccCCCCCCCeeeeecCCC-CCCCCCcccHHHH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR-IMESLEGKNDLGEQIRLVSIPDG-MEPWEDRNDFGKL 81 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~ 81 (160)
.+|++...+..||+.|.+.++++|.++||+|.|+++....+. +.+ ..++.+..++.. +.. ...+ ..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~--------~~g~~~~~~~~~~l~~---~~~~-~~ 69 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE--------KENIPYYSISSGKLRR---YFDL-KN 69 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc--------ccCCcEEEEeccCcCC---CchH-HH
Confidence 368888888899999999999999999999999997654322 111 136777766531 111 1111 11
Q ss_pred HHHHHHhccH--HHHHHHHHHhcCCCCCccEEEecCCCcc--HHHHHHHhCCccEEEccc
Q 040291 82 FEKVLQVMPG--KLEELIEDINSREDEKLDCFIADGYMAW--SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 82 ~~~~~~~~~~--~~~~ll~~l~~~~~~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~~ 137 (160)
+......... ....++++ .+||+||...-... +...|..+++|.+..-..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n 123 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRK------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD 123 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC
Confidence 1111111111 11223443 68999998654432 466788889999886543
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=1.1e-05 Score=62.92 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=71.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCC-EEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCC-CcccHHHHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGF-RVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWE-DRNDFGKLF 82 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~~~~ 82 (160)
+|++...++.||+.|.+.++++|.+||+ +|.++.+....+..... ..++.+..++.+..... ........+
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~~~~~~~~~~~~~~~ 74 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGGLRRKGSLKLLKAPF 74 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecccccccCcHHHHHHHH
Confidence 5778888889999999999999999999 57777665543322111 13677777764322111 111121111
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEecC-CCc-cHHHHHHHhCCccEEEcc
Q 040291 83 EKVLQVMPGKLEELIEDINSREDEKLDCFIADG-YMA-WSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~-~~~-~~~~~A~~lgiP~i~~~~ 136 (160)
.... .....+.++++ .+||+||.=. +.+ .+...|..+|||.+.--.
T Consensus 75 ~~~~--~~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq 122 (357)
T COG0707 75 KLLK--GVLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ 122 (357)
T ss_pred HHHH--HHHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEec
Confidence 2111 11123456665 6899999743 333 345678888999998644
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.14 E-value=6.4e-05 Score=57.88 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=66.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEK 84 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (160)
||+++.....||+.....|+++|.++||+|++++.+..... ... ...++++..++..-.. .......+..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--~~~-----~~~g~~~~~i~~~~~~---~~~~~~~l~~ 71 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--RLV-----PKAGIEFYFIPVGGLR---RKGSFRLIKT 71 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--ccc-----ccCCCceEEEeccCcC---CCChHHHHHH
Confidence 79999999999999778999999999999999986432110 000 0135666655422100 1112111111
Q ss_pred HHHhc--cHHHHHHHHHHhcCCCCCccEEEecCCCc--cHHHHHHHhCCccEEE
Q 040291 85 VLQVM--PGKLEELIEDINSREDEKLDCFIADGYMA--WSMEVAKKMNVRGALF 134 (160)
Q Consensus 85 ~~~~~--~~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i~~ 134 (160)
..... ...+.+++++ .+||+|++..... .+..++...++|.+..
T Consensus 72 ~~~~~~~~~~l~~~i~~------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 72 PLKLLKAVFQARRILKK------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 11111 0123344444 6899999865332 2344677789999863
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.13 E-value=6.5e-05 Score=58.28 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=67.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFE 83 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 83 (160)
++|+++..+..||...++.|+++|.++||+|++++........ .. ...++++..++..-... ......+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~--~~-----~~~g~~~~~~~~~~~~~---~~~~~~l~ 71 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEAR--LV-----PKAGIEFHFIPSGGLRR---KGSLANLK 71 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh--cc-----ccCCCcEEEEeccCcCC---CChHHHHH
Confidence 7899998888899999999999999999999999886532111 00 01356666554211011 11111111
Q ss_pred HHHHhcc--HHHHHHHHHHhcCCCCCccEEEecCCC-cc-HHHHHHHhCCccEEE
Q 040291 84 KVLQVMP--GKLEELIEDINSREDEKLDCFIADGYM-AW-SMEVAKKMNVRGALF 134 (160)
Q Consensus 84 ~~~~~~~--~~~~~ll~~l~~~~~~~~d~vI~D~~~-~~-~~~~A~~lgiP~i~~ 134 (160)
....... ..+.+++++ .+||+|++.... .+ +..++...++|.+..
T Consensus 72 ~~~~~~~~~~~~~~~ik~------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 72 APFKLLKGVLQARKILKR------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHHHHHHHHHHHh------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 1111111 123334433 589999988632 33 345567778999875
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.12 E-value=6.3e-05 Score=57.95 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=67.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCC-cccHHHHHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWED-RNDFGKLFE 83 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~-~~~~~~~~~ 83 (160)
||++......||......+++.|.++||+|++++....... ... ...++++..++..-..... .........
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVGGLRRKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEecCcCCCChHHHHHHHHH
Confidence 57888888889999999999999999999999987543211 110 0135666655432101100 011111111
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEecCCC--ccHHHHHHHhCCccEEE
Q 040291 84 KVLQVMPGKLEELIEDINSREDEKLDCFIADGYM--AWSMEVAKKMNVRGALF 134 (160)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~--~~~~~~A~~lgiP~i~~ 134 (160)
. .... ..+..++++ .+||+|++..-. ..+..+|...|+|.+..
T Consensus 74 ~-~~~~-~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 74 L-LKGV-LQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred H-HHHH-HHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 1 1111 123344443 689999976532 23456778889999864
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.02 E-value=6.5e-05 Score=59.31 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=64.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFE 83 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 83 (160)
++|++......||+.|. .++++|.++|++++|+..... .+++.+. ...+++..++. ..+.+.+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~v--------~G~~~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELSV--------MGLREVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhhh--------ccHHHHHH
Confidence 68999998899999999 999999999999999987643 2333110 01223222221 11111111
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEE-ecCCCcc--HHHHHHHhCCccEEE
Q 040291 84 KVLQVMPGKLEELIEDINSREDEKLDCFI-ADGYMAW--SMEVAKKMNVRGALF 134 (160)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~vI-~D~~~~~--~~~~A~~lgiP~i~~ 134 (160)
.+... ...+.+..+.+++ .+||+|| .|.-... ....|+.+|||.+..
T Consensus 70 ~~~~~-~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 70 RLGRL-LKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHH-HHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 11111 1112223333332 6899998 6853322 233788999999986
No 37
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.51 E-value=0.0044 Score=49.34 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP 66 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (160)
++.||.+++.+-.|+-.=+..+|++|+++||+|++++........+.. ...++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~ 60 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLP 60 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECC
Confidence 467888888888888777889999999999999999875432111100 12578777764
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.51 E-value=0.0015 Score=51.02 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=32.3
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
++|+++.....||+.|.. ++++|.++++++.++....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~ 38 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG 38 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc
Confidence 489999999999999998 9999999988888876543
No 39
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.46 E-value=0.0044 Score=48.80 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=61.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEK 84 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (160)
||+++---.+ -++.+||++|+++||+|++++........ .+++.+.++...............+..
T Consensus 1 ~il~~~~~~p---~~~~~la~~L~~~G~~v~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~ 66 (396)
T cd03818 1 RILFVHQNFP---GQFRHLAPALAAQGHEVVFLTEPNAAPPP-----------GGVRVVRYRPPRGPTSGTHPYLREFEE 66 (396)
T ss_pred CEEEECCCCc---hhHHHHHHHHHHCCCEEEEEecCCCCCCC-----------CCeeEEEecCCCCCCCCCCccchhHHH
Confidence 4555543333 34788999999999999999887654211 146666665321111111111111111
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHh-CCccEEEc
Q 040291 85 VLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKM-NVRGALFW 135 (160)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~l-giP~i~~~ 135 (160)
........++ .+..+... +.+||+|+....+.++..+.+.+ ++|.+.+.
T Consensus 67 ~~~~~~~~~~-~~~~~~~~-~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 67 AVLRGQAVAR-ALLALRAK-GFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHHHH-HHHHHHhc-CCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 1111111122 22222221 25899999887766677777775 48888743
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.46 E-value=0.0034 Score=47.48 Aligned_cols=51 Identities=27% Similarity=0.364 Sum_probs=37.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCC
Q 040291 11 IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPD 67 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 67 (160)
--|.||+.=.+.||++|.++|++|+|++.......... . ...++.+..+++
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~-i-----~~~g~~v~~~~~ 61 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDL-L-----LSAGFPVYELPD 61 (279)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHH-H-----HHcCCeEEEecC
Confidence 34679999999999999999999999998764432111 1 014677777654
No 41
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.24 E-value=0.001 Score=51.47 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=46.2
Q ss_pred CCeEEEEc--CCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCC
Q 040291 3 RPHVLVLP--IPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPD 67 (160)
Q Consensus 3 ~~~i~~~~--~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 67 (160)
++||++++ .-|-||+.=.+.+|++|++. |.+|++++......... ...+++++.+|.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecCc
Confidence 45999999 56779999999999999997 99999999876543321 226899999985
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.06 E-value=0.0063 Score=47.29 Aligned_cols=110 Identities=15% Similarity=0.285 Sum_probs=58.3
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHH
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKL 93 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
.|.-..+..|+++|+++||+|++++........... ....++.+..++..................+ .
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 88 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPAEYLPKEELWPYLDEF-------A 88 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccccccCCChhhcchhHHHH-------H
Confidence 478889999999999999999999865432211000 0124566655542110000000111111111 1
Q ss_pred HHHHHHHhcCCCCCccEEEecCCCc--cHHHHHHHhCCccEEEcc
Q 040291 94 EELIEDINSREDEKLDCFIADGYMA--WSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i~~~~ 136 (160)
..+.+.+.... .++|+|+...... .+..++.++|+|++....
T Consensus 89 ~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h 132 (398)
T cd03800 89 DDLLRFLRREG-GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFH 132 (398)
T ss_pred HHHHHHHHhcC-CCccEEEEecCccchHHHHHHhhcCCceEEEee
Confidence 12222222210 2899999765432 245678899999886433
No 43
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=97.04 E-value=0.0013 Score=44.25 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHH
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEELIE 98 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 98 (160)
-+..|+++|+++||+|+++++......... ...++++..++..... ......... ..+.+++.
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~l~ 68 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE-------EEDGVRVHRLPLPRRP--WPLRLLRFL--------RRLRRLLA 68 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE-------EETTEEEEEE--S-SS--SGGGHCCHH--------HHHHHHCH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc-------ccCCceEEeccCCccc--hhhhhHHHH--------HHHHHHHh
Confidence 367899999999999999997655432111 1146777666522111 000010111 12233331
Q ss_pred HHhcCCCCCccEEEecCCCc-cHHHHHH-HhCCccEEEccc
Q 040291 99 DINSREDEKLDCFIADGYMA-WSMEVAK-KMNVRGALFWPS 137 (160)
Q Consensus 99 ~l~~~~~~~~d~vI~D~~~~-~~~~~A~-~lgiP~i~~~~~ 137 (160)
. .+ .++|+|....... +...++. ..++|.+.-.-.
T Consensus 69 ~-~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 69 A-RR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp H-CT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred h-hc---cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 1 11 6899998665332 2344555 889999986654
No 44
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.03 E-value=0.012 Score=44.61 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
.|+-.-...++++|.++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 578888999999999999999999887543
No 45
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.98 E-value=0.035 Score=36.90 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=61.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEK 84 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (160)
+|+++......| ...+++.|.++|++|++++.....+.... ..++.+..++.+. ......+.
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~~------k~~~~~~~- 62 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSPR------KSPLNYIK- 62 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCCC------CccHHHHH-
Confidence 466666555555 56889999999999999999655422221 1578877764221 11112221
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEecCCCc-cH--HHHHHHhC-CccEEEcc
Q 040291 85 VLQVMPGKLEELIEDINSREDEKLDCFIADGYMA-WS--MEVAKKMN-VRGALFWP 136 (160)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~~--~~~A~~lg-iP~i~~~~ 136 (160)
+ . .+..++++ .+||+|.+-...+ +. ..++...| +|.+....
T Consensus 63 ~----~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 63 Y----F-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred H----H-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 1 23445544 6899998666554 22 23556777 88886544
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.87 E-value=0.011 Score=44.63 Aligned_cols=96 Identities=24% Similarity=0.311 Sum_probs=62.8
Q ss_pred CeEEEEcCC----CCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHH
Q 040291 4 PHVLVLPIP----AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFG 79 (160)
Q Consensus 4 ~~i~~~~~p----~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 79 (160)
+||++++-+ |.||+.=++.||++|.+||..++|++.....+.+.+.+ .++.+... ...+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~~--------~~~n-- 63 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLEG--------RGNN-- 63 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccceee--------eccc--
Confidence 477887744 57999999999999999999999999877554221110 11111000 0000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccH---HHHHHHhCCccEEEccch
Q 040291 80 KLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWS---MEVAKKMNVRGALFWPSS 138 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~---~~~A~~lgiP~i~~~~~~ 138 (160)
.+++ .|+|++|.|.....+ ..+..+.+.+.+.|-.-.
T Consensus 64 ----------------~ik~------~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~ 103 (318)
T COG3980 64 ----------------LIKE------EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDEN 103 (318)
T ss_pred ----------------cccc------ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCC
Confidence 2222 588999999877554 457778888888875543
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.84 E-value=0.015 Score=46.97 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCC-----CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 2 NRPHVLVLPIPA-----QGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 2 ~~~~i~~~~~p~-----~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.++||+++..+. .|=-+-+..++++|.++||+|+++++...
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 468999885332 24346778999999999999999997643
No 48
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.74 E-value=0.025 Score=44.79 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=26.9
Q ss_pred CeEEEEcC---CCCC-ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 4 PHVLVLPI---PAQG-HVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 4 ~~i~~~~~---p~~G-H~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+||++++. |-.| =-.-...|+++|.++||+|+++++..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 46777763 3222 11235799999999999999999764
No 49
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.72 E-value=0.036 Score=43.11 Aligned_cols=105 Identities=21% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCh-hhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHH-HHHHHHHHhccH
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYDH-KRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFG-KLFEKVLQVMPG 91 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (160)
.-|+.-+..+.++|.++||+|.+.+-+... ..+... .++.+..+...- .+.. ....... .
T Consensus 10 p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~--------yg~~y~~iG~~g------~~~~~Kl~~~~~-R--- 71 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL--------YGIDYIVIGKHG------DSLYGKLLESIE-R--- 71 (335)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH--------cCCCeEEEcCCC------CCHHHHHHHHHH-H---
Confidence 349999999999999999999986654322 122222 478877765321 1121 1112111 1
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHH
Q 040291 92 KLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAAS 141 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~ 141 (160)
..++++.+.+ .+||++|+- ....+.-+|.-+|+|.|.|.=..-..
T Consensus 72 -~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 72 -QYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred -HHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhh
Confidence 1223333322 589999952 22446669999999999997665443
No 50
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.54 E-value=0.025 Score=42.99 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.|+...+..|+++|.++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 68999999999999999999999998754
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.54 E-value=0.037 Score=42.10 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=30.6
Q ss_pred eEEEEcCCC----CCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPIPA----QGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p~----~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
||++++... .|+-.-...++++|+++||+|++++.....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 355555322 589999999999999999999999876543
No 52
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.54 E-value=0.13 Score=34.79 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
|++++|++.+.++.+|-.-..-++..|.++|++|+++...-..+.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 8899999999999999999999999999999999999887665544
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.52 E-value=0.066 Score=40.23 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=33.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
+|++++....|+......++++|.++||+|++++......
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~ 40 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDEL 40 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcc
Confidence 4677776678889999999999999999999999876543
No 54
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.45 E-value=0.048 Score=38.30 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=54.3
Q ss_pred hCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCc
Q 040291 29 KQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEELIEDINSREDEKL 108 (160)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (160)
++||+|++++........ +|++.+.+...-............++.-..... ...+.+.+|++. +..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~-Gf~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQ-GFVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHc-CCCC
Confidence 479999999955443221 377777764311111111111111121112222 233445555554 3689
Q ss_pred cEEEecCCCccHHHHHHHh-CCccEEEc
Q 040291 109 DCFIADGYMAWSMEVAKKM-NVRGALFW 135 (160)
Q Consensus 109 d~vI~D~~~~~~~~~A~~l-giP~i~~~ 135 (160)
|+||.-.-+..+..+.+.+ ++|.+.+.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999999888889999999 89988853
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.30 E-value=0.078 Score=40.84 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=30.1
Q ss_pred eEEEEcCCC-CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 5 HVLVLPIPA-QGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 5 ~i~~~~~p~-~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
||++++.|. .|.-.-...+++.|.++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 666666544 4777889999999999999999998754
No 56
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.19 E-value=0.11 Score=46.11 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHhCC--CEEEEEeCCCChhhHHhhhccC---------------CCCCCCeeeeecCCCCCCCC-Cc
Q 040291 14 QGHVIPLLEFSQCLAKQG--FRVTFVNTDYDHKRIMESLEGK---------------NDLGEQIRLVSIPDGMEPWE-DR 75 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~l~~~~~~~~-~~ 75 (160)
.|+..=..+||++|+++| |+|.++|-....+.+...+..+ ....++++++.+|.+..... ..
T Consensus 195 GGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~K 274 (1050)
T TIGR02468 195 GGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPK 274 (1050)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCH
Confidence 356667799999999998 8999988654322110011000 01235788777776543211 22
Q ss_pred ccHHHHHHHHHHhccHHHHH----HHHHHhcCCCCCccEEEecCCCc-c-HHHHHHHhCCccEEEccc
Q 040291 76 NDFGKLFEKVLQVMPGKLEE----LIEDINSREDEKLDCFIADGYMA-W-SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~----ll~~l~~~~~~~~d~vI~D~~~~-~-~~~~A~~lgiP~i~~~~~ 137 (160)
..++..+..|.+.+...+.+ +.+.+.......||+|-+-.... . +..+++.+|||.|....+
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HS 342 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHS 342 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECcc
Confidence 33444444444433322222 22222110112489998765442 2 467899999998886665
No 57
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=96.15 E-value=0.13 Score=44.46 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHH--------HHhCCC----EEEEEeCCCChhhHHhhhcc---CCCCCCCeeeeecCCCCCCCC-----
Q 040291 14 QGHVIPLLEFSQC--------LAKQGF----RVTFVNTDYDHKRIMESLEG---KNDLGEQIRLVSIPDGMEPWE----- 73 (160)
Q Consensus 14 ~GH~~P~l~la~~--------L~~rGh----~Vt~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~~~----- 73 (160)
.|+..=.++++++ |+++|| +|+++|-...... ...+.. .....++.+++.+|.+.....
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~-~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~ 357 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAE-GTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNW 357 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcc-ccccccccccccCCCceEEEEecCCCCcccccccc
Confidence 4666667777776 578999 7778775432111 000000 001125677777765432211
Q ss_pred -CcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCc-c-HHHHHHHhCCccEEEcc
Q 040291 74 -DRNDFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMA-W-SMEVAKKMNVRGALFWP 136 (160)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~-~~~~A~~lgiP~i~~~~ 136 (160)
...+++..+..+.+. ..+.+.+.. ..+||+|++-...+ + +..+|+++|||.+....
T Consensus 358 i~k~~l~p~l~~f~~~---~~~~~~~~~----~~~pDlIHahy~d~glva~lla~~lgVP~v~t~H 416 (784)
T TIGR02470 358 ISRFEIWPYLETFAED---AEKEILAEL----QGKPDLIIGNYSDGNLVASLLARKLGVTQCTIAH 416 (784)
T ss_pred cCHHHHHHHHHHHHHH---HHHHHHHhc----CCCCCEEEECCCchHHHHHHHHHhcCCCEEEECC
Confidence 112333333333322 122222221 14799999876443 2 46789999999776543
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=96.10 E-value=0.11 Score=39.44 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.2
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 10 PIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+....|+-.-...++++|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 344578999999999999999999999987654
No 59
>PLN00142 sucrose synthase
Probab=95.81 E-value=0.092 Score=45.40 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=55.5
Q ss_pred HHHHHHHhCCCEEE----EEeCCCChhhHHhhhcc---CCCCCCCeeeeecCCCCCCCC-----CcccHHHHHHHHHHhc
Q 040291 22 EFSQCLAKQGFRVT----FVNTDYDHKRIMESLEG---KNDLGEQIRLVSIPDGMEPWE-----DRNDFGKLFEKVLQVM 89 (160)
Q Consensus 22 ~la~~L~~rGh~Vt----~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~ 89 (160)
+++++|+++||+|+ ++|=-..... ...+.. .....++.+++.+|.+...+. ....++.++..+.+.
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~-~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~- 396 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAK-GTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAED- 396 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCcc-CCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHH-
Confidence 46688889999875 6553211110 000000 001124667766665432111 112333433333322
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCCc-c-HHHHHHHhCCccEEEccc
Q 040291 90 PGKLEELIEDINSREDEKLDCFIADGYMA-W-SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~-~~~~A~~lgiP~i~~~~~ 137 (160)
..+.+.+.. ..+||+|..-.-.+ + +..+|+++|||.+....+
T Consensus 397 --~~~~~~~~~----~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 397 --AASEILAEL----QGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred --HHHHHHHhc----CCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 222232321 14799999885543 3 467999999999987654
No 60
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=95.68 E-value=0.2 Score=37.94 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=29.9
Q ss_pred CeEEEEcCC--------CCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVLVLPIP--------AQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~~p--------~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+||++++.. ..|--.-...|+++|.++||+|++++....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 477776642 234457789999999999999999997654
No 61
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=95.59 E-value=0.19 Score=39.59 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHH
Q 040291 15 GHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLE 94 (160)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
|--.-...++++|+++||+|+++++......... ....++.+..+|..... .......... ....++
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~i~v~~~p~~~~~--~~~~~~~~~~-----~~~~l~ 81 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIR------YLTNGLKVYYLPFVVFY--NQSTLPTFFG-----TFPLLR 81 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcc------cccCceeEEEecceecc--CCccccchhh-----hHHHHH
Confidence 4457789999999999999999997532111000 00135665555421100 0000111111 011233
Q ss_pred HHHHHHhcCCCCCccEEEecCCC-cc---HHHHHHHhCCccEEEc
Q 040291 95 ELIEDINSREDEKLDCFIADGYM-AW---SMEVAKKMNVRGALFW 135 (160)
Q Consensus 95 ~ll~~l~~~~~~~~d~vI~D~~~-~~---~~~~A~~lgiP~i~~~ 135 (160)
+.+++ .+||+|-.-... .+ +..+++.+++|.+...
T Consensus 82 ~~~~~------~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~ 120 (398)
T cd03796 82 NILIR------ERITIVHGHQAFSALAHEALLHARTMGLKTVFTD 120 (398)
T ss_pred HHHHh------cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEe
Confidence 34433 589998855432 22 3456788999988743
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.56 E-value=0.26 Score=38.34 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.5
Q ss_pred CeEEEEcCC-CC-CChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 4 PHVLVLPIP-AQ-GHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 4 ~~i~~~~~p-~~-GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
++|+++... .. |=-.-...||++|+++||+|+++++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 367766532 22 333566899999999999999998753
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.28 E-value=0.56 Score=35.74 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHH
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKL 93 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
.|--.-...++++|+++||+|+++++.......... .++++..++.. .. ........+ ..+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~--------~~~~~~~~~~~--~~----~~~~~~~~~-----~~l 70 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELEA--------EGSRHIKLPFI--SK----NPLRILLNV-----ARL 70 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh--------cCCeEEEcccc--cc----chhhhHHHH-----HHH
Confidence 455577889999999999999999876543221111 35665554321 10 111111111 112
Q ss_pred HHHHHHHhcCCCCCccEEEecCCC-ccH-HHHHHHhCCccEEEccc
Q 040291 94 EELIEDINSREDEKLDCFIADGYM-AWS-MEVAKKMNVRGALFWPS 137 (160)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D~~~-~~~-~~~A~~lgiP~i~~~~~ 137 (160)
..+++. .++|+|+..... .|. ..++..+++|.+.....
T Consensus 71 ~~~~~~------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 110 (355)
T cd03819 71 RRLIRE------EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHG 110 (355)
T ss_pred HHHHHH------cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCC
Confidence 333333 589999976533 343 34567789999875543
No 64
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.18 E-value=0.5 Score=30.72 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=35.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
++++.+.++..|.....-++..|.++|++|..+...-..+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~ 41 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEE 41 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 57899999999999999999999999999988776544433
No 65
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=95.14 E-value=0.32 Score=39.07 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHhCCC--EEEEEeCCCChhhHHhhhccC-CCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHH
Q 040291 16 HVIPLLEFSQCLAKQGF--RVTFVNTDYDHKRIMESLEGK-NDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGK 92 (160)
Q Consensus 16 H~~P~l~la~~L~~rGh--~Vt~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
=-.-+..|+++|+++|| +|+++|...........+... .....++++..++...............+..+ ...
T Consensus 28 ~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~----~~~ 103 (439)
T TIGR02472 28 QTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDEL----ADN 103 (439)
T ss_pred cchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHH----HHH
Confidence 33567899999999997 999999532110000000000 00124676666653211100101111111111 112
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCC-cc-HHHHHHHhCCccEEEcc
Q 040291 93 LEELIEDINSREDEKLDCFIADGYM-AW-SMEVAKKMNVRGALFWP 136 (160)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~-~~-~~~~A~~lgiP~i~~~~ 136 (160)
+..++++ .. .+||+|-+-... .+ +..+++.+|+|++...-
T Consensus 104 l~~~~~~---~~-~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H 145 (439)
T TIGR02472 104 LLQHLRQ---QG-HLPDLIHAHYADAGYVGARLSRLLGVPLIFTGH 145 (439)
T ss_pred HHHHHHH---cC-CCCCEEEEcchhHHHHHHHHHHHhCCCEEEecc
Confidence 3333332 11 369999976533 22 34567888999977554
No 66
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=95.06 E-value=0.29 Score=38.46 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHH
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGK 92 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
..|--.-...|+++|+++||+|+++++......-. .. ....++++..++...-.. .....+...+.......
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~-~~----~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 90 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPP-VV----EVAPGVRVRNVVAGPYEG---LDKEDLPTQLCAFTGGV 90 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC-cc----ccCCCcEEEEecCCCccc---CCHHHHHHHHHHHHHHH
Confidence 34666889999999999999999999754321100 00 011466666553211000 01111111111111112
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCC-cc-HHHHHHHhCCccEEEccc
Q 040291 93 LEELIEDINSREDEKLDCFIADGYM-AW-SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~-~~-~~~~A~~lgiP~i~~~~~ 137 (160)
++.+++.. . .++|+|-+-... .+ +..+++.+++|+|.....
T Consensus 91 ~~~~~~~~---~-~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~ 133 (405)
T TIGR03449 91 LRAEARHE---P-GYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHT 133 (405)
T ss_pred HHHHhhcc---C-CCCCeEEechHHHHHHHHHHHHhcCCCEEEeccc
Confidence 22333321 1 479998755422 22 345677889998876553
No 67
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=94.52 E-value=0.058 Score=42.24 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCC-CChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 3 RPHVLVLPIPAQ-GHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 3 ~~~i~~~~~p~~-GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+||++++.... ||..+...|+++|.++||+|.++.+.
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 578998885554 99999999999999999987776554
No 68
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.40 E-value=0.46 Score=36.43 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=36.3
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
.+|.+.-.|+.|--.-.-.|+++|.+|||+|-++.-+....
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 46888889999999999999999999999999998766543
No 69
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=94.37 E-value=0.49 Score=35.41 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
.|+..-+..+++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 688999999999999999999999987554
No 70
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.30 E-value=0.58 Score=35.74 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP 66 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (160)
.|=-.-...++++|.++||+|++++.......... ...++++..++
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~-------~~~~i~~~~~~ 60 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPYPKQKET-------EYNGVRLIHIP 60 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCccc-------ccCCceEEEcC
Confidence 34457778999999999999999987654321111 12467776665
No 71
>PLN02275 transferase, transferring glycosyl groups
Probab=94.28 E-value=2.1 Score=33.59 Aligned_cols=126 Identities=13% Similarity=0.013 Sum_probs=66.5
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCC-EEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGF-RVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKL 81 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (160)
+.++.++..+-.|.-.-+..++++|+++|| +||+++........+. . ...++++..++. .+...........
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~-~-----~~~~v~v~r~~~-~~~~~~~~~~~~~ 76 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL-L-----NHPSIHIHLMVQ-PRLLQRLPRVLYA 76 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH-h-----cCCcEEEEECCC-cccccccccchHH
Confidence 456777777888999999999999999986 7999976543221111 0 124677777653 1111111111121
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEecC-CCcc----HHHHHHHhCCccEEEccc
Q 040291 82 FEKVLQVMPGKLEELIEDINSREDEKLDCFIADG-YMAW----SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~-~~~~----~~~~A~~lgiP~i~~~~~ 137 (160)
+..+.... ..+..++..+... ..+||+|++-. ...+ +..++...++|.++.+..
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~-~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 77 LALLLKVA-IQFLMLLWFLCVK-IPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred HHHHHHHH-HHHHHHHHHHHhh-CCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 11111100 0111122211000 16899988643 3222 234566778999886554
No 72
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=94.20 E-value=1.3 Score=34.78 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=62.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCChhh-----HHhhhccCCCCCCCeeeee-cCCCCCCCCCccc
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYDHKR-----IMESLEGKNDLGEQIRLVS-IPDGMEPWEDRND 77 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~-l~~~~~~~~~~~~ 77 (160)
+|+++. +.+..+.=+.++.++|.+. ++++.++.|....+. ..... ..++.... +.-.+.. .....
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~ 73 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIE------KDGFDIDEKIEILLDS-DSNAG 73 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHH------HcCCCCCCccccccCC-CCCCC
Confidence 555555 7788888899999999974 789888877644321 11000 01222110 0000110 00112
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEE--ecCCCcc-HHHHHHHhCCccEEEccc
Q 040291 78 FGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFI--ADGYMAW-SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI--~D~~~~~-~~~~A~~lgiP~i~~~~~ 137 (160)
....... +-..+.+++++ .+||+|+ .|.+... +..+|.++|||++.+.-+
T Consensus 74 ~~~~~~~----~~~~~~~~~~~------~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 74 MAKSMGL----TIIGFSDAFER------LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHH----HHHHHHHHHHH------hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 2121111 11235556655 5789877 4555543 567899999999976443
No 73
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=94.09 E-value=1.3 Score=31.82 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+.++++.+.++..|-....-++..|.++|++|+.+...-..+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 56899999999999999999999999999999988765544443
No 74
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=93.91 E-value=0.72 Score=34.35 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
..|...-...++++|.++||+|++++.....
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3566677889999999999999999886553
No 75
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=93.76 E-value=0.2 Score=38.67 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=27.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYD 42 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~ 42 (160)
|++++ +....+.=+.++.++|.++ |+++.++.+...
T Consensus 2 i~~~~-gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h 38 (363)
T cd03786 2 ILVVT-GTRPEYIKLAPLIRALKKDPGFELVLVVTGQH 38 (363)
T ss_pred EEEEE-ecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 44444 7777788888899999988 999998777543
No 76
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=93.58 E-value=1.3 Score=34.53 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=60.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCChhhHHhhhccCCCCCCCeee-eecCCCCCCCCCcccHHHHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYDHKRIMESLEGKNDLGEQIRL-VSIPDGMEPWEDRNDFGKLF 82 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~~ 82 (160)
+|++++ +...++.=+.++.++|.++ +.++.++.|............ .-++.. +.+. ... ...+.....
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-----~~~i~~~~~~~--~~~--~~~~~~~~~ 71 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-----LFHLPPDYDLN--IMS--PGQTLGEIT 71 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-----hcCCCCCeeee--cCC--CCCCHHHHH
Confidence 666655 8889999999999999987 677777776654432221100 012211 1111 101 111121111
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEe--cCCCc-cHHHHHHHhCCccEEE
Q 040291 83 EKVLQVMPGKLEELIEDINSREDEKLDCFIA--DGYMA-WSMEVAKKMNVRGALF 134 (160)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~--D~~~~-~~~~~A~~lgiP~i~~ 134 (160)
... + ..+.+++++ .+||+|++ |.... ++..+|.++|||++.+
T Consensus 72 ~~~---~-~~l~~~l~~------~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 72 SNM---L-EGLEELLLE------EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHH---H-HHHHHHHHH------cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 111 1 235556655 58999885 44433 3567889999999865
No 77
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=93.42 E-value=0.37 Score=38.37 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=53.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEE----EeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHH
Q 040291 11 IPAQGHVIPLLEFSQCLAKQGFRVTF----VNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVL 86 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 86 (160)
..+.|.+.-..+|+++|.++++++.+ .++.+ .+...+.. ..++.+..+|.+.+
T Consensus 57 a~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~-~~~~~~~~------~~~~~~~~~P~d~~---------------- 113 (425)
T PRK05749 57 AVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTG-SERAQALF------GDDVEHRYLPYDLP---------------- 113 (425)
T ss_pred eCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccH-HHHHHHhc------CCCceEEEecCCcH----------------
Confidence 45669999999999999998755332 22222 22222111 12444444442211
Q ss_pred HhccHHHHHHHHHHhcCCCCCccEEEecC--CCccHHHHHHHhCCccEEEc
Q 040291 87 QVMPGKLEELIEDINSREDEKLDCFIADG--YMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 87 ~~~~~~~~~ll~~l~~~~~~~~d~vI~D~--~~~~~~~~A~~lgiP~i~~~ 135 (160)
..++.+++. .+||+++.-. +++.....+.+.|+|.+...
T Consensus 114 ----~~~~~~l~~------~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 ----GAVRRFLRF------WRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred ----HHHHHHHHh------hCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 134455655 6899988432 23334456788999998864
No 78
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.28 E-value=2.4 Score=32.18 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=26.7
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
..|.-.-...++++|.++||+|++++.....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 5578888899999999999999999887544
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=93.16 E-value=1.9 Score=32.82 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=30.3
Q ss_pred eEEEEcC--CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPI--PAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~--p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
||+++.. ...|.-.-...++++|.++||+|++++.....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 3454443 45688888999999999999999999976544
No 80
>PLN02846 digalactosyldiacylglycerol synthase
Probab=92.89 E-value=0.22 Score=40.51 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=31.7
Q ss_pred CCCeEEEEcC---CCC-CChHHHHHHHHHHHhCC-CEEEEEeCCC
Q 040291 2 NRPHVLVLPI---PAQ-GHVIPLLEFSQCLAKQG-FRVTFVNTDY 41 (160)
Q Consensus 2 ~~~~i~~~~~---p~~-GH~~P~l~la~~L~~rG-h~Vt~~~~~~ 41 (160)
+++||++++- |.. |=..-.+.++..|+++| |+|+++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 4689999984 444 55477788888999999 8999998854
No 81
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.80 E-value=3 Score=32.30 Aligned_cols=108 Identities=21% Similarity=0.168 Sum_probs=66.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCC-hhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHH-HHHHHHHHhc
Q 040291 12 PAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD-HKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFG-KLFEKVLQVM 89 (160)
Q Consensus 12 p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (160)
.-.-|+.-+-.+.++|.++||+|.+.+-+.. ...+.+. -|+++..+... .+ ..+. .+.....+.
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~--------ygf~~~~Igk~--g~---~tl~~Kl~~~~eR~- 73 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL--------YGFPYKSIGKH--GG---VTLKEKLLESAERV- 73 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH--------hCCCeEeeccc--CC---ccHHHHHHHHHHHH-
Confidence 4456888899999999999999987554432 2223232 36776665421 10 1122 122222111
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHH
Q 040291 90 PGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAAS 141 (160)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~ 141 (160)
-.+.++... .+||+.+. -..+.+.-+|--+|+|.|.|.-..-+.
T Consensus 74 -~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 74 -YKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred -HHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 123344443 68999998 566778889999999999997655443
No 82
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.48 E-value=0.19 Score=34.01 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
.|=-.-...|+++|+++||+|+++++....
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 355577899999999999999999876543
No 83
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=91.82 E-value=1.9 Score=32.35 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
..|+-.-...+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4788899999999999999999999987654
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=91.59 E-value=0.25 Score=37.69 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=28.7
Q ss_pred EEEEcC--CCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 6 VLVLPI--PAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 6 i~~~~~--p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|+++.. ...|+......|+++|.++||+|++++...
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 455543 346889999999999999999999987543
No 85
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=91.53 E-value=0.34 Score=32.21 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=33.3
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIM 47 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (160)
+||++.-.++.+=+. ...+.++|.++|++|+++.++.-.+.+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~ 43 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVT 43 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhh
Confidence 477777777766666 9999999999999999999987655443
No 86
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=91.43 E-value=0.38 Score=36.72 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred CeEEEEcCC-C-CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVLVLPIP-A-QGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~~p-~-~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+||+++... + .|+-.-...++++|.++||+|++++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 467777633 3 68889999999999999999999987654
No 87
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=91.17 E-value=4.7 Score=31.31 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=38.6
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhHH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRIM 47 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~ 47 (160)
+||+++-..+.|++.-..++.++|.++ +.+|++++.+...+.++
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 46 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS 46 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh
Confidence 379999999999999999999999996 89999999877665543
No 88
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.16 E-value=4.3 Score=29.12 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
|++..|.+++.++.|=....+.++-+.+.+|++|.++-
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 45678999999999999999999999999999999874
No 89
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=91.07 E-value=5.1 Score=30.16 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=40.3
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGM 69 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~ 69 (160)
|.++||+++.+|+...-. +..++|.++|.++.++......+.. .. ...++.+.+|.+.
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~-~~-------l~~~DgLvipGGf 58 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAER-KS-------VSDYDCLVIPGGF 58 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccc-cc-------hhhCCEEEECCCC
Confidence 778999999999987554 5678999999999988764321110 00 1357777777664
No 90
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.01 E-value=1.3 Score=35.03 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCC-CEEEEEeCCCChh-hHHhhhccCCCCCCCeeeeecCCC-CCCCCCccc
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQG-FRVTFVNTDYDHK-RIMESLEGKNDLGEQIRLVSIPDG-MEPWEDRND 77 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rG-h~Vt~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~ 77 (160)
|.+.+|+++. +.+--+.=+.++.+++.+.+ .+..++.|....+ .+...+- ...++.. |+- +.......+
T Consensus 1 m~~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~l----e~~~i~~---pdy~L~i~~~~~t 72 (383)
T COG0381 1 MKMLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVL----ELFGIRK---PDYDLNIMKPGQT 72 (383)
T ss_pred CCceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHH----HHhCCCC---CCcchhccccCCC
Confidence 6666776665 88888999999999999987 7777777765542 2211110 0012221 110 100001122
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEE--ecCCCccH-HHHHHHhCCccEEEcc
Q 040291 78 FGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFI--ADGYMAWS-MEVAKKMNVRGALFWP 136 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI--~D~~~~~~-~~~A~~lgiP~i~~~~ 136 (160)
+.+. . ...-..+.+++++ .+||+|+ .|.....+ +.+|.+.+||+..+-.
T Consensus 73 l~~~---t-~~~i~~~~~vl~~------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEA 124 (383)
T COG0381 73 LGEI---T-GNIIEGLSKVLEE------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEA 124 (383)
T ss_pred HHHH---H-HHHHHHHHHHHHh------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEec
Confidence 2221 1 1111246667766 6899877 67766554 6788899999988643
No 91
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.43 E-value=0.95 Score=30.80 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
|+++||++.+.+.-||-.-.--+++.|++.|++|.........
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp 52 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP 52 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH
Confidence 4789999999999999999999999999999999986655443
No 92
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=90.28 E-value=0.59 Score=35.30 Aligned_cols=31 Identities=39% Similarity=0.427 Sum_probs=27.3
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
..|...-...++++|.++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 4689999999999999999999999886543
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=90.23 E-value=2.4 Score=32.96 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=27.3
Q ss_pred EEEEc--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 6 VLVLP--IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 6 i~~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
|+++. ..+.|=-.-...+++.|.+.||+|+++++...
T Consensus 2 i~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~ 40 (372)
T cd03792 2 VLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGD 40 (372)
T ss_pred eEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCC
Confidence 44443 34445567777999999999999999887543
No 94
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=90.19 E-value=4.3 Score=30.25 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
-+..|.++|.+.| +|+++.+...+..
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 3567889999988 9999999876543
No 95
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=90.15 E-value=0.55 Score=33.77 Aligned_cols=42 Identities=10% Similarity=-0.071 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
+.+||++.-.++.|=+.-...++++|.++|++|+++.|+...
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 456777666554444333699999999999999999988654
No 96
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.79 E-value=0.79 Score=30.24 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCC---ChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVLVLPIPAQG---HVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~~p~~G---H~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
++|+|+--|..+ .-.....++++-++|||+|.++...+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 367777666655 346788999999999999999988764
No 97
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.72 E-value=2.3 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
=+..|+++|. .+++||++.+...+..
T Consensus 15 Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 15 GIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred HHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 3567788888 9999999999876643
No 98
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.61 E-value=2.9 Score=31.42 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
++||++.-==|. |---+..|+++|.+.| +|+++.+...+..
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 567776652221 1234677888998888 7999998876543
No 99
>PRK00654 glgA glycogen synthase; Provisional
Probab=89.61 E-value=0.67 Score=37.58 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.2
Q ss_pred CeEEEEcC---CC---CCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPI---PA---QGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~---p~---~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+||+++++ |. .|--.-.-.|+++|+++||+|+++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 35666552 22 244466689999999999999999975
No 100
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=89.47 E-value=4.2 Score=31.14 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=37.9
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~ 46 (160)
+||+++-..+.|++.-..++.+.|.++ +.+||+++.+.+...+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 489999999999999999999999997 9999999987765443
No 101
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=89.39 E-value=1.9 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=25.6
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEccchH
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFWPSSA 139 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~~~~~ 139 (160)
..||+|| .|+.. ..+..-|.++|||.|.+.-+..
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 4789877 77655 3456679999999999876653
No 102
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=89.17 E-value=5.5 Score=30.11 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 18 IPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
--+..|+++|.+.| +|+++.+...+..
T Consensus 14 pGi~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 14 PGLRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred HHHHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 44678899998888 8999988876543
No 103
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.73 E-value=7.1 Score=31.31 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=34.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLA-KQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~~~~~~~~~~ 46 (160)
+++...|+.|=..-.+.++..++ +.|+.|.|++.+.....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 45666899999999999999988 679999999988765544
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=88.65 E-value=7.3 Score=31.35 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=63.0
Q ss_pred EEcCCCCCChHHHHHHHHHHHhC--CCEEEEEe-CCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHH
Q 040291 8 VLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVN-TDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEK 84 (160)
Q Consensus 8 ~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (160)
-+=..+.|=++-..+|.++|.++ ++.+++-+ |+...+.+.+.+ ...+....+|-+.+
T Consensus 53 WiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D~~-------------- 112 (419)
T COG1519 53 WIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLDLP-------------- 112 (419)
T ss_pred EEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcCch--------------
Confidence 33345678999999999999999 77777755 444444444432 13355555553321
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEE-ecC-CCccHHHHHHHhCCccEEEcc
Q 040291 85 VLQVMPGKLEELIEDINSREDEKLDCFI-ADG-YMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~d~vI-~D~-~~~~~~~~A~~lgiP~i~~~~ 136 (160)
..++.+++. .+||++| .+. +++....-+++.|+|.+.+..
T Consensus 113 ------~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 113 ------IAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred ------HHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 123445555 5788655 676 555567788999999998754
No 105
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.51 E-value=1.6 Score=31.24 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=39.3
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIM 47 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (160)
+.++++.+.++..|-....-++..|..+|++|+++...-..+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v 128 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVV 128 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 468999999999999999999999999999999998876655543
No 106
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=88.31 E-value=6.2 Score=29.59 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 20 LLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
...|.++|++ +|+|+++.+...+..
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 6678888865 579999999876543
No 107
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=88.21 E-value=6.9 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=22.1
Q ss_pred CCCCCChHHHHHHHHHH-HhCC-CEEEEEeCCC
Q 040291 11 IPAQGHVIPLLEFSQCL-AKQG-FRVTFVNTDY 41 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L-~~rG-h~Vt~~~~~~ 41 (160)
.++.||..-|+.|.+.+ .++. ++..+++..+
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 46789999999999999 4454 4444444443
No 108
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.14 E-value=2.9 Score=26.92 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=33.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
|+++...+..-|-.-..-++..|.++||+|.++-....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP 39 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 68889999999999999999999999999999866543
No 109
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.82 E-value=4 Score=30.64 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 20 LLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
-..|+++|.++||+|+..+...+.
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCc
Confidence 578999999999999987665543
No 110
>PRK08506 replicative DNA helicase; Provisional
Probab=87.75 E-value=7 Score=32.03 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=34.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+++...|+.|=..-.+.++...+..|+.|.|++.+.....+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 45666899999999999999998899999999988765544
No 111
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=87.50 E-value=1.3 Score=33.01 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=31.0
Q ss_pred eEEEEcCC--CCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPIP--AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p--~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
||+++... ..|+-.-+..++++|.+.||+|++++.....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 35555533 5788899999999999999999999886543
No 112
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=87.33 E-value=5.2 Score=31.46 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=23.8
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC-C--CEEEEE
Q 040291 7 LVLPIPAQGHVIPLLEFSQCLAKQ-G--FRVTFV 37 (160)
Q Consensus 7 ~~~~~p~~GH~~P~l~la~~L~~r-G--h~Vt~~ 37 (160)
.+....|.||......|.++|.++ | .+|+++
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 345578889999999999999875 4 455554
No 113
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=87.20 E-value=9.3 Score=28.66 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 20 LLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
+..|+++|.+ +++|+++.+...+.
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 6788888865 67999999887654
No 114
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=86.92 E-value=11 Score=28.17 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=37.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCChhhHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQG--FRVTFVNTDYDHKRIM 47 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~~~~~~~~~~~ 47 (160)
||+++-..+-|++.-+.++.++|.++. -+|++++.....+.++
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 588888899999999999999999974 8999999987765443
No 115
>PRK14099 glycogen synthase; Provisional
Probab=86.89 E-value=1.4 Score=36.02 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCCCeEEEEcC---CC--C-CChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPI---PA--Q-GHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~---p~--~-GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|.++||++++. |. . |=-.-.-.|.++|+++||+|.++.+.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 78889998762 22 2 33366788999999999999999985
No 116
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=86.50 E-value=5.6 Score=24.42 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChhhHHh
Q 040291 20 LLEFSQCLAKQGFRVTFVNTDYDHKRIME 48 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (160)
++++++.|.+.|+++ ++|++..+.+..
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 468999999999998 366665555543
No 117
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=86.18 E-value=9.7 Score=28.71 Aligned_cols=98 Identities=8% Similarity=0.049 Sum_probs=49.3
Q ss_pred HHHHHHHHHhC---CCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHHH
Q 040291 20 LLEFSQCLAKQ---GFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEEL 96 (160)
Q Consensus 20 ~l~la~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (160)
+..|+++|.+. |++|+++.+...+....+.+ +....+++..+.++ .......+-+-.. + .+..+
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai----T~~~pl~~~~~~~~--~yav~GTPaDCV~-l------al~~~ 82 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI----SYTHPMMIAELGPR--RFAAEGSPADCVL-A------ALYDV 82 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc----cCCCCeEEEEeCCC--eEEEcCchHHHHH-H------HHHHh
Confidence 45566777663 47999999987654332211 11223444444311 0000111111111 1 12223
Q ss_pred HHHHhcCCCCCccEEEecC----------CCcc---HHHHHHHhCCccEEEcc
Q 040291 97 IEDINSREDEKLDCFIADG----------YMAW---SMEVAKKMNVRGALFWP 136 (160)
Q Consensus 97 l~~l~~~~~~~~d~vI~D~----------~~~~---~~~~A~~lgiP~i~~~~ 136 (160)
+.. .+||+||+.. +++. ++.-|..+|||.|.++.
T Consensus 83 ~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 83 MKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred cCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 221 3689998743 3333 24557888999999985
No 118
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=86.12 E-value=12 Score=27.92 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 11 IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+...|.-.....++++|.+.||+|.+++....
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 34478999999999999999999999987543
No 119
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=86.08 E-value=1.6 Score=35.29 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=27.3
Q ss_pred CeEEEEcC---CC---CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 4 PHVLVLPI---PA---QGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 4 ~~i~~~~~---p~---~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+||+++++ |. .|=-.-.-.|+++|+++||+|.++++.-
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 36666652 32 2333556889999999999999999753
No 120
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=85.95 E-value=9.4 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
+.-|-+++.++.|=....+.+|-+.+.+|++|.++
T Consensus 2 ~G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 2 KGLIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45678899999999999999999999999999993
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=85.70 E-value=12 Score=31.68 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCCCccEEE-ecCC--CccHHHHHHHhCC--ccEEEcc
Q 040291 92 KLEELIEDINSREDEKLDCFI-ADGY--MAWSMEVAKKMNV--RGALFWP 136 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI-~D~~--~~~~~~~A~~lgi--P~i~~~~ 136 (160)
.++++.+.+.+ .+||++| .|.- ....+..+++.|+ |.+.+.+
T Consensus 298 ~~~~l~~~i~~---~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs 344 (608)
T PRK01021 298 RYRKLYKTILK---TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC 344 (608)
T ss_pred HHHHHHHHHHh---cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 34555555554 6899988 6873 3335567788896 9877644
No 122
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=85.62 E-value=2.9 Score=30.40 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+.++++.+.++..|-....-++..|.++|++|+++...-..+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 56899999999999999999999999999999999876655444
No 123
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.57 E-value=3.6 Score=28.85 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPD 67 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 67 (160)
.++|.+.-.|+.|-..-...++..|.++|++|-=+.+++..+.=. ..|++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGk---------R~GF~Ivdl~t 60 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGK---------RIGFKIVDLAT 60 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCe---------EeeeEEEEccC
Confidence 578999999999999999999999999999998777766543211 13677777653
No 124
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=85.41 E-value=3 Score=27.36 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=36.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
|+++.+.++..|-.-..-++.-|...|++|..+......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999886554443
No 125
>PRK05595 replicative DNA helicase; Provisional
Probab=85.26 E-value=8.6 Score=31.17 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=33.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLA-KQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.++..++ +.|..|.+++.+.....+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 44566889999999999999887 569999999988765544
No 126
>PRK09620 hypothetical protein; Provisional
Probab=85.20 E-value=1.6 Score=32.09 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCCCChHHH------------HHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPL------------LEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~------------l~la~~L~~rGh~Vt~~~~~ 40 (160)
|+..+|++...|..=.+.|. ..||++|.+||++|+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45667777766544443332 57899999999999998753
No 127
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.97 E-value=1.8 Score=30.23 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
..|+-.....+++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 66999999999999999999999998
No 128
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=84.95 E-value=18 Score=29.00 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=23.0
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
.+||++|.. +.+..+|+++|||.+.+.-
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 589999977 4577899999999988543
No 129
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=84.94 E-value=13 Score=29.69 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHh--CCCEEE---EEeCCCChhhHHhhhccCCCCCCCeeeeecCCC-CCCCCCcccHHHHHHHHHHh
Q 040291 15 GHVIPLLEFSQCLAK--QGFRVT---FVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDG-MEPWEDRNDFGKLFEKVLQV 88 (160)
Q Consensus 15 GH~~P~l~la~~L~~--rGh~Vt---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 88 (160)
|==.--+.++++|.+ +|++|. ++.+....+. +..+ ..+ .+..+|.+ +........+.+....+...
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~--~~ip-----~~g-~~~~~~sgg~~~~~~~~~~~~~~~gl~~~ 79 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQN--LGIP-----IIG-PTKELPSGGFSYQSLRGLLRDLRAGLVGL 79 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhh--CCCc-----eeC-CCCCCCCCCccCCCHHHHHHHHHhhHHHH
Confidence 333566889999998 699999 8887654321 0110 012 33334322 11100001112222212222
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 89 MPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
..... .++++.. .++|+||.=-=+. ....|...|+|++.+.+
T Consensus 80 ~~~~~-~~~~~~~----~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 80 TLGQW-RALRKWA----KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHH-HHHHHHh----hcCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 22222 2344421 3789888322111 56678888999999433
No 130
>PRK06321 replicative DNA helicase; Provisional
Probab=84.73 E-value=14 Score=30.30 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=33.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.+++..+. .|..|.|++-+.....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 456668999999999999999884 59999999888766544
No 131
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.41 E-value=13 Score=27.76 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
-+..|+++|.+. |+|+++.+...+..
T Consensus 15 Gi~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 15 GIRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred hHHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 367888999988 69999999876543
No 132
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=84.29 E-value=15 Score=28.19 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=36.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~ 46 (160)
||+++-..+-|++.-..++.++|.+. +.+|++++.+...+.+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLL 44 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHH
Confidence 58899999999999999999999986 8999999987665444
No 133
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.27 E-value=18 Score=28.18 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=39.3
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~ 46 (160)
.++|+++-..+.|++.-..++.++|.++ +.+|++++.+...+.+
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 4689999999999999999999999997 8999999998776544
No 134
>PHA02542 41 41 helicase; Provisional
Probab=84.20 E-value=8.1 Score=31.71 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=34.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.+|...++.|..|-+++-+.....+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 45666899999999999999999899999999887765543
No 135
>PRK08760 replicative DNA helicase; Provisional
Probab=83.72 E-value=10 Score=31.15 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=33.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.+|...+. .|..|-|++-+.....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 456668999999999999999885 49999999888765544
No 136
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=83.43 E-value=11 Score=29.87 Aligned_cols=39 Identities=26% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCccEEE-ecCC--CccHHHHHHHhCCc--cEEE
Q 040291 93 LEELIEDINSREDEKLDCFI-ADGY--MAWSMEVAKKMNVR--GALF 134 (160)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI-~D~~--~~~~~~~A~~lgiP--~i~~ 134 (160)
++++.+.+.+ .+||++| .|.- ....+..+++.|+| .+.+
T Consensus 71 ~~~~~~~~~~---~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyY 114 (373)
T PF02684_consen 71 FRKLVERIKE---EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYY 114 (373)
T ss_pred HHHHHHHHHH---cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEE
Confidence 3444444443 6899888 8873 33345677888988 4443
No 137
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=83.36 E-value=5.9 Score=27.72 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccchHHHHHH
Q 040291 91 GKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSSAASVAL 144 (160)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~ 144 (160)
..+++.++++.+ .++|+||.+.. +..+|+++|+|++.+.++.-+....
T Consensus 112 ~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~esi~~A 159 (176)
T PF06506_consen 112 EEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEESIRRA 159 (176)
T ss_dssp HHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HHHHHHH
T ss_pred HHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHHHHHH
Confidence 346666777665 57999998854 5689999999999998865554443
No 138
>PRK11519 tyrosine kinase; Provisional
Probab=83.33 E-value=29 Score=30.05 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=31.5
Q ss_pred CeEEEEc--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVLVLP--IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.++++++ .|+.|=..-...||..|+.+|++|-++-.+..
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4566555 57789999999999999999999999866543
No 139
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=83.09 E-value=2 Score=32.71 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCcc-----HHHHHHHhCCccEEEcc
Q 040291 91 GKLEELIEDINSREDEKLDCFIADGYMAW-----SMEVAKKMNVRGALFWP 136 (160)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~-----~~~~A~~lgiP~i~~~~ 136 (160)
+.++++++++-+.+ .++-+||.|.|... ...+|.+.+||++.+.-
T Consensus 133 p~IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD 182 (284)
T PF07894_consen 133 PHIKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLD 182 (284)
T ss_pred CCHHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEec
Confidence 45777777765433 68999999999854 24677799999999754
No 140
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=82.18 E-value=2.2 Score=30.47 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=30.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
||++.-.++.|=+.-..++.++|.++|++|+++.++.-.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 566666666666666679999999999999999988654
No 141
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=82.02 E-value=11 Score=24.27 Aligned_cols=87 Identities=22% Similarity=0.178 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHH
Q 040291 16 HVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEE 95 (160)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
.-.=+.++++.|.+.|+++ +++.+..+.+.. .++....+.. ..... ..+ .+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~---------~gi~~~~v~~-~~~~~-~~~------------~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLE---------NGIPVTPVAW-PSEEP-QND------------KPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHH---------cCCCceEeee-ccCCC-CCC------------chhHHH
Confidence 4455789999999999888 466666555543 3454433311 00000 000 123445
Q ss_pred HHHHHhcCCCCCccEEEecCC---------CccHHHHHHHhCCccEE
Q 040291 96 LIEDINSREDEKLDCFIADGY---------MAWSMEVAKKMNVRGAL 133 (160)
Q Consensus 96 ll~~l~~~~~~~~d~vI~D~~---------~~~~~~~A~~lgiP~i~ 133 (160)
++++ .++|+||.-+- .......|-++|||+++
T Consensus 66 ~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 5554 58999997432 23456789999999963
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=81.86 E-value=4.5 Score=29.08 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=26.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
||++.-==+. +---+..|.++|.+.||+|+++.+...+..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 4444442222 334467899999888899999999876543
No 143
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=81.77 E-value=1.9 Score=30.63 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCCChHHH------------HHHHHHHHhCCCEEEEEeCCC
Q 040291 2 NRPHVLVLPIPAQGHVIPL------------LEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~------------l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+..+|++...|..=.+.|. ..||+++..||++||++..+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 3455555555554444443 578999999999999999874
No 144
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.76 E-value=3.4 Score=30.90 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhh
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMES 49 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (160)
...++++-.||.|=..=...++.+|..+|+.|+|++.++....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34688888999998888999999999999999999998876655443
No 145
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=81.66 E-value=19 Score=29.00 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=34.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~~~~~ 46 (160)
+++...|+.|=..-.+.++..++. .|..|.+++.+.....+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 456668899999999999999886 59999999998776554
No 146
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=81.35 E-value=1.7 Score=35.05 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 18 IPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.-.-.|+++|+++||+|+++++.-
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 445779999999999999999753
No 147
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.18 E-value=5.1 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
+.|--.-..+++..+...|++||+++|+....
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~r 69 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVR 69 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHH
Confidence 45666777889999999999999999987643
No 148
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=81.04 E-value=12 Score=23.88 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHH
Q 040291 15 GHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLE 94 (160)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
++-.=+.++++.|.+.|+++. ++++..+.+.. .|+....+... .. ..+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~---------~gi~~~~v~~~-~~-----------------~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQE---------AGIPVEVVNKV-SE-----------------GRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHH---------cCCeEEEEeec-CC-----------------CchhHH
Confidence 355668899999999999883 56665555543 36665443211 00 112344
Q ss_pred HHHHHHhcCCCCCccEEEecCC-------CccHHHHHHHhCCccEE
Q 040291 95 ELIEDINSREDEKLDCFIADGY-------MAWSMEVAKKMNVRGAL 133 (160)
Q Consensus 95 ~ll~~l~~~~~~~~d~vI~D~~-------~~~~~~~A~~lgiP~i~ 133 (160)
+++++ .++|+||.-+- ..+..-.|-++|||.++
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 44443 68999997432 23356689999999985
No 149
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=81.01 E-value=4 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
.-++++..+...|..-+.++|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3577788888999999999999999999998754
No 150
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=80.96 E-value=1.6 Score=32.35 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 18 IPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.-.-.|+++|+++||+|+++++.-
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 456789999999999999999864
No 151
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=80.80 E-value=9.8 Score=26.99 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=44.1
Q ss_pred CCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCh-hhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHH
Q 040291 11 IPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDH-KRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQ 87 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 87 (160)
..+.|=++-..+|+++|.++ |++|.+-++...- +...+.++ +.+....+|-+.+
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D~~----------------- 84 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLDFP----------------- 84 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---SSH-----------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCccCH-----------------
Confidence 45678899999999999987 8888875553332 22322111 2333333332210
Q ss_pred hccHHHHHHHHHHhcCCCCCccEEE-ecC-CCccHHHHHHHhCCccEEEcc
Q 040291 88 VMPGKLEELIEDINSREDEKLDCFI-ADG-YMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~d~vI-~D~-~~~~~~~~A~~lgiP~i~~~~ 136 (160)
...+.+++. .+||++| .+. +++.....|++.|||.+.+..
T Consensus 85 ---~~~~rfl~~------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 ---WAVRRFLDH------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ---HHHHHHHHH------H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ---HHHHHHHHH------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 123445555 3677655 555 445566788999999998754
No 152
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=80.20 E-value=5 Score=30.39 Aligned_cols=38 Identities=13% Similarity=-0.013 Sum_probs=27.0
Q ss_pred eEEEEcCCCC-CChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 5 HVLVLPIPAQ-GHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 5 ~i~~~~~p~~-GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
||++++.-.. +--.-+..+++.|.++||+|++++....
T Consensus 1 ki~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred CEEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 3555552222 2446688999999999999999987643
No 153
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=80.19 E-value=24 Score=26.92 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=20.1
Q ss_pred CCccEEEecCCC--ccHHHHHHHhCCccEEE
Q 040291 106 EKLDCFIADGYM--AWSMEVAKKMNVRGALF 134 (160)
Q Consensus 106 ~~~d~vI~D~~~--~~~~~~A~~lgiP~i~~ 134 (160)
.+||+|..-... ..+..+++++|+|++..
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 579988864322 22456789999999874
No 154
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=80.10 E-value=3.9 Score=31.18 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=37.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRIM 47 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~ 47 (160)
||+++-....|++.-..++.++|.++ +.+||+++.+.+.+.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 58889999999999999999999998 99999999987765543
No 155
>PRK06904 replicative DNA helicase; Validated
Probab=79.83 E-value=24 Score=28.94 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=33.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.+|...+. .|+.|.|++.+-..+.+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 455668999999999999998875 59999999988766544
No 156
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=79.31 E-value=2.9 Score=29.64 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
+||++.-.++.|=+. ...+.++|.++|++|.++.|+.-.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~f 42 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKF 42 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 466766666555554 79999999999999999998875443
No 157
>PRK07773 replicative DNA helicase; Validated
Probab=79.21 E-value=24 Score=31.44 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=33.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.++...+.+ |..|.|++-+.....+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 5566689999999999999998855 8899999988776554
No 158
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=78.94 E-value=31 Score=27.56 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHhC--CCEEEEEeCCCChhh---H---HhhhccCCCCCCCeeeeecC---CCCCCCCCcccHHHHHH
Q 040291 15 GHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKR---I---MESLEGKNDLGEQIRLVSIP---DGMEPWEDRNDFGKLFE 83 (160)
Q Consensus 15 GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~---~---~~~~~~~~~~~~~i~~~~l~---~~~~~~~~~~~~~~~~~ 83 (160)
|==.-+...+++|.++ ||+|+++|+...... + .+... .....++.++.+. ..++.. ....+..+..
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~ 91 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFN--IELDRPRIVFFLLKYRKLVEAS-TYPRFTLLGQ 91 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcC--eecCCCceEEEEecceeeeccc-cCCceeeHHH
Confidence 3345678889999998 899999998754421 1 11110 0111234433321 111111 0001111111
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHh-CCccEEEccch
Q 040291 84 KVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKM-NVRGALFWPSS 138 (160)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~l-giP~i~~~~~~ 138 (160)
.+. . +-..++.+.. .+||++|.++-++.+..+++.+ ++|.+...-.+
T Consensus 92 ~~~-~----~~~~~~~~~~---~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 92 ALG-S----MILGLEALLK---LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred HHH-H----HHHHHHHHHh---cCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 111 1 1111222211 4799988888777777777653 68888765544
No 159
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.86 E-value=3.4 Score=31.71 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|++++|+++-.++.| .-+|..|++.||+|+++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 567899999777766 356788999999999998754
No 160
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=78.76 E-value=35 Score=28.04 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=38.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIME 48 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (160)
-+++.-.|+.|=-.-.++++.+.+++|.++.+++.++..+.+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 36677789999999999999999999999999999988766544
No 161
>PRK05636 replicative DNA helicase; Provisional
Probab=78.74 E-value=22 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=32.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLA-KQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.+++..+ +.|..|.|++.+.....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 45666889999999999999877 458899998887765443
No 162
>PRK09165 replicative DNA helicase; Provisional
Probab=78.70 E-value=22 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=33.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC---------------CCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQ---------------GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~r---------------Gh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.++...+.+ |..|.|++.+.....+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 4566688999999999999988754 7889999988776554
No 163
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=78.21 E-value=3.5 Score=29.39 Aligned_cols=45 Identities=24% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCh-HHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC
Q 040291 15 GHV-IPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP 66 (160)
Q Consensus 15 GH~-~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (160)
|=+ .-.-+|+..|+++||+||+.......+.-... ..+++...+|
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~-------y~gv~l~~i~ 62 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE-------YNGVRLVYIP 62 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc-------cCCeEEEEeC
Confidence 444 44556888888899999998775544222222 2577777665
No 164
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=77.13 E-value=4.3 Score=33.31 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCChHHH------------HHHHHHHHhCCCEEEEEeCCC
Q 040291 2 NRPHVLVLPIPAQGHVIPL------------LEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~------------l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+..||++...|..=-+.|. ..||+++..||++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3457888777777777776 478999999999999998653
No 165
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=77.09 E-value=32 Score=26.58 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=65.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCChhhHHhhhccCCCCCCCeee-eecCCCCCCCCCcccHHHH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQ--GFRVTFVNTDYDHKRIMESLEGKNDLGEQIRL-VSIPDGMEPWEDRNDFGKL 81 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~ 81 (160)
||+++-..+.|++.-..++.++|.++ +.+|++++.+...+.++. .+.++- +.++... .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~--------~p~vd~vi~~~~~~-----~~~~~-- 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE--------NPDINALYGLDRKK-----AKAGE-- 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc--------CCCccEEEEeChhh-----hcchH--
Confidence 58899999999999999999999996 899999999877654432 255653 3332110 00000
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEE
Q 040291 82 FEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGAL 133 (160)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~ 133 (160)
..+. ...++++.+.+ .++|++|.=........++...|+|.-+
T Consensus 66 -~~~~-----~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 -RKLA-----NQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred -HHHH-----HHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0111 11223444443 6899988433223356677777888654
No 166
>PRK07004 replicative DNA helicase; Provisional
Probab=76.41 E-value=36 Score=27.85 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~~~~~ 46 (160)
+++..-|+.|=..-.+.++...+. .|..|.|++-+-....+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 455668999999999999998874 69999999888766554
No 167
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=76.15 E-value=3.2 Score=30.49 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 16 HVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|+..|...+.+|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56789999999999999999998874
No 168
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=75.79 E-value=7.4 Score=30.52 Aligned_cols=30 Identities=20% Similarity=0.086 Sum_probs=22.7
Q ss_pred CCccEEEecCCCccH----------HHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWS----------MEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~----------~~~A~~lgiP~i~~~ 135 (160)
.+||++|+.+.+..+ ..+.++++||.++-.
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 589999999976431 235679999999853
No 169
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=75.10 E-value=5.6 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=28.7
Q ss_pred eEEEEcC--C-CCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 5 HVLVLPI--P-AQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 5 ~i~~~~~--p-~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
||+++.. | ..|--.-...|+++|+++||+|+++.....
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 4555542 2 346668899999999999999999886543
No 170
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=74.96 E-value=9.5 Score=29.02 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCCCCC-----hHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGH-----VIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH-----~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|++.||+++.. |.|+ +.....++++|.+.||+|.++...
T Consensus 1 ~~~~~i~vl~g-g~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~ 44 (296)
T PRK14569 1 MKNEKIVVLYG-GDSPEREVSLKSGKAVLDSLISQGYDAVGVDAS 44 (296)
T ss_pred CCCcEEEEEeC-CCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 88899998885 4443 467788999999999999887543
No 171
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.59 E-value=6.9 Score=23.25 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.-+++|..|+++|.+||++...+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 357899999999999999987653
No 172
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=73.97 E-value=9.1 Score=30.92 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=34.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
|++---|+-|--.=+++++..|++|| +|-+++.++...++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 45555789999999999999999999 99999999887655
No 173
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=72.97 E-value=5 Score=28.43 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=28.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
|++.-.++-|-+.- ..+.++|.++|++|.++.|+.-.+.+
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 34443444444443 78999999999999999998766544
No 174
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=72.86 E-value=20 Score=26.86 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCCcc--HHHHHHHhCCccEEEccchHH
Q 040291 92 KLEELIEDINSREDEKLDCFIADGYMAW--SMEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~~~~~ 140 (160)
.+.++.+.+++ .+..||+++..... +..+|++.|+|.+.+.+.+..
T Consensus 205 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~ 252 (266)
T cd01018 205 DLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAAD 252 (266)
T ss_pred HHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHH
Confidence 45666666654 57999999987754 457999999999988766543
No 175
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=72.77 E-value=6.5 Score=31.43 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
++..||++.-.++.| ..-...+.+.|.+.|++|+++.++.-.+.
T Consensus 1 l~~k~IllgiTGSia-a~~~~~ll~~L~~~g~~V~vv~T~~A~~f 44 (390)
T TIGR00521 1 LENKKILLGVTGGIA-AYKTVELVRELVRQGAEVKVIMTEAAKKF 44 (390)
T ss_pred CCCCEEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHH
Confidence 356787777655544 45589999999999999999999875443
No 176
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=72.74 E-value=7.8 Score=26.68 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+..+|+++-.+-. -...++.|.+.|++||++.+.
T Consensus 12 ~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 3456666643322 377889999999999999644
No 177
>PRK11823 DNA repair protein RadA; Provisional
Probab=72.57 E-value=51 Score=26.87 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=34.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+++.-.|+.|=-.-+++++..++++|.+|.+++.++..+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45666889999999999999999999999999998766554
No 178
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=72.57 E-value=13 Score=27.38 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCCccH---HHHHHHhCCccEEEccchHHH
Q 040291 92 KLEELIEDINSREDEKLDCFIADGYMAWS---MEVAKKMNVRGALFWPSSAAS 141 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~~---~~~A~~lgiP~i~~~~~~~~~ 141 (160)
.+.+..++|.+ .+.|+||.|.+.+.. ..+++..|+|++...+.-+..
T Consensus 166 ~l~~Aa~~L~~---~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr~ 215 (221)
T PF07302_consen 166 ELAAAARELAE---QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVARL 215 (221)
T ss_pred HHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHHH
Confidence 34445555554 579999999988664 358899999999866544443
No 179
>PRK04940 hypothetical protein; Provisional
Probab=72.47 E-value=12 Score=26.61 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=27.4
Q ss_pred CccEEEecCCC-ccHHHHHHHhCCccEEEccchHH
Q 040291 107 KLDCFIADGYM-AWSMEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 107 ~~d~vI~D~~~-~~~~~~A~~lgiP~i~~~~~~~~ 140 (160)
++.++|-..+. +|+.-+|+++|+|.|.+.|.---
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFP 94 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCCh
Confidence 45788877766 67889999999999999886433
No 180
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=72.28 E-value=8.7 Score=30.17 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=21.5
Q ss_pred CCccEEE-ecC--CCccHHHHHHHh--CCccEEEcc
Q 040291 106 EKLDCFI-ADG--YMAWSMEVAKKM--NVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI-~D~--~~~~~~~~A~~l--giP~i~~~~ 136 (160)
.+||++| .|. |....+.-+++. |||.+.+.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~ 110 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYIL 110 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 5899888 787 333345566777 799888654
No 181
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=72.14 E-value=48 Score=26.37 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+++.-.|+.|=-.-+++++..++.+|.+|.+++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45556788899999999999999999999999887665544
No 182
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=71.84 E-value=32 Score=24.21 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
+..|-+++..+.|=....+.+|-+-+.+|.+|.++--
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 4567889999999999888888888889999998753
No 183
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.78 E-value=45 Score=25.85 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=66.3
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQG--FRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKL 81 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (160)
++|+++-..+-|++.-...+.+.|.++. .++++++.....+.+.. .+.+.-+..-+. .. ..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~--------~p~I~~vi~~~~--~~---~~---- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKL--------NPEIDKVIIIDK--KK---KG---- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhc--------ChHhhhhccccc--cc---cc----
Confidence 6899999999999999999999999984 99999999887754432 133443221010 00 01
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 82 FEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
..+ .....+.+.+.+ .++|+||.=.-..-...++...++|.-.-+-
T Consensus 65 -~~~-----~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 65 -LGL-----KERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred -cch-----HHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 000 123344455543 5799887433323355666677887766444
No 184
>PRK06849 hypothetical protein; Provisional
Probab=71.72 E-value=11 Score=29.77 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCC-CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 1 MNR-PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 1 m~~-~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
|+. ++|++.- .. ..-.+++++.|.++||+|.++.....
T Consensus 1 ~~~~~~VLI~G-~~---~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITG-AR---APAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeC-CC---cHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 444 4555553 22 22578999999999999999877653
No 185
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.69 E-value=4.6 Score=28.99 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
++|.++... |+.- -.+.++...|||+||-++-...
T Consensus 1 mKIaiIgAs--G~~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGAS--GKAG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecC--chhH--HHHHHHHHhCCCeeEEEEeChH
Confidence 356665433 3322 3678999999999999876543
No 186
>PLN02316 synthase/transferase
Probab=71.13 E-value=11 Score=34.10 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=28.8
Q ss_pred CCeEEEEc---CCC--CCCh-HHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 3 RPHVLVLP---IPA--QGHV-IPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 3 ~~~i~~~~---~p~--~GH~-~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.+||++++ .|. .|-+ .-...|+++|+++||+|.++++..
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 46788776 232 3444 445789999999999999999864
No 187
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.96 E-value=3.7 Score=28.12 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 040291 21 LEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~~ 41 (160)
..+|..|+++||+|++...+.
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 378999999999999999875
No 188
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=70.34 E-value=16 Score=23.37 Aligned_cols=41 Identities=24% Similarity=0.218 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
++....++..|-....-++..|.++|++|.++......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56677789999999999999999999999998765544433
No 189
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=70.18 E-value=15 Score=25.28 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCcc-H-HH-HH--HHh-CCccEEEccch
Q 040291 91 GKLEELIEDINSREDEKLDCFIADGYMAW-S-ME-VA--KKM-NVRGALFWPSS 138 (160)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~-~-~~-~A--~~l-giP~i~~~~~~ 138 (160)
+.+.+++++ .+||+||+-..+.. . .. +. ..+ ++|.+++.|=.
T Consensus 79 ~~l~~~l~~------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 79 RRLIRLLRE------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHhh------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 345555555 68999997665432 2 22 21 223 58888776644
No 190
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=70.11 E-value=1.8 Score=32.15 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=24.6
Q ss_pred CccEEE-ecCCCc-cHHHHHHHhCCccEEEccchH
Q 040291 107 KLDCFI-ADGYMA-WSMEVAKKMNVRGALFWPSSA 139 (160)
Q Consensus 107 ~~d~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~ 139 (160)
-||+++ .|+-.- -+..=|.++|||+|.+.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 489765 888663 356679999999999865544
No 191
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.89 E-value=5.8 Score=31.82 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=26.4
Q ss_pred EEEEcCC-C--CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 6 VLVLPIP-A--QGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 6 i~~~~~p-~--~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+.+=|++ . -||+.|+..| +.|.+.||+|+++....
T Consensus 37 ~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 37 IGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred EeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 4455554 2 3899998877 67999999999987653
No 192
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=69.58 E-value=8.9 Score=30.83 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|+.++|.++-.+..| ..+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 777888888555544 56899999999999988654
No 193
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=69.43 E-value=8.1 Score=30.99 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
|.+.||++.-.++. ...=...+.++|.++|++|.++.|+.-.+
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~ 46 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKK 46 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHH
Confidence 34667877765655 45567899999999999999999986544
No 194
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=69.24 E-value=7.8 Score=22.52 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 040291 21 LEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+..|..|+++|++|+++=..+
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567889999999999986544
No 195
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=69.09 E-value=2.7 Score=32.70 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=25.4
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEccchH
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFWPSSA 139 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~~~~~ 139 (160)
..||+|| .|+-. ..+..=|.++|||.|.+.=+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 3689766 78766 3466789999999999865544
No 196
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=69.00 E-value=13 Score=29.98 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=22.8
Q ss_pred CCccEEEecCCCccH----------HHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWS----------MEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~----------~~~A~~lgiP~i~~~ 135 (160)
.+||++|..+.+..+ ..+.+++|||.++-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 75 KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 589999999966431 235678999999864
No 197
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=69.00 E-value=13 Score=30.00 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCccEEEecCCCccH----------HHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWS----------MEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~----------~~~A~~lgiP~i~~~ 135 (160)
.+||++|..+.+..+ ..+.+++|||.++-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 75 ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 589999999966431 235678999999864
No 198
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.91 E-value=19 Score=22.58 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|+..+|++++..|.|--.-...+=+.+.++|.++.+-...
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 5678999999888764444455555666789988875554
No 199
>PRK07206 hypothetical protein; Provisional
Probab=68.73 E-value=37 Score=27.00 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+.+++++-... .-..+++++.++|+++.++.....
T Consensus 2 ~k~~liv~~~~-----~~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 2 MKKVVIVDPFS-----SGKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred CCeEEEEcCCc-----hHHHHHHHHHHcCCeEEEEEcCCC
Confidence 34677766432 235689999999999998887643
No 200
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=68.58 E-value=20 Score=26.53 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=39.6
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMES 49 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (160)
.-+++.-.|+.|...-..+++...+++|..|-++++......+.+.
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 3467777999999999999999999999999999999877665443
No 201
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=68.56 E-value=39 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
+.-|.+++..+.|=..-.+.+|-+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 45688899999999999999999999999999654
No 202
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=68.38 E-value=7 Score=27.59 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
||++.-.++ +...-...+.++|.++|++|.++.++.-.+
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 455555444 445556799999999999999999886543
No 203
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=68.03 E-value=32 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.4
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 10 PIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
+-++.|-..-.+.|++.|+++|.+|-++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3566788889999999999999999986
No 204
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=67.58 E-value=2.7 Score=30.46 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=23.4
Q ss_pred CccEEE-ecCCCc-cHHHHHHHhCCccEEEccc
Q 040291 107 KLDCFI-ADGYMA-WSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 107 ~~d~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~ 137 (160)
.||+|| .|+..- -+..-|.++|||.|.+.-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 578766 888664 3566799999999998643
No 205
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=67.26 E-value=62 Score=25.74 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCCcc-----H-HHHHHHhCCccEEEccchHHHHHHHHchhhHHhcC
Q 040291 90 PGKLEELIEDINSREDEKLDCFIADGYMAW-----S-MEVAKKMNVRGALFWPSSAASVALLFHIPKLIDDG 155 (160)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~-----~-~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~ 155 (160)
.+.++.++++ ...+.|.+|.=...+. . ..+++++++|.++.---+...+...+.+-+..++|
T Consensus 178 PPa~~~ll~~----~~~~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVaGFEp~DiL~~i~~ll~qi~~g 245 (369)
T TIGR00075 178 PPAVEALLEN----PAVQIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIAGFEPVDILQAIYMLLKQAISG 245 (369)
T ss_pred HHHHHHHHcC----CCCCccEEEecCEEEEEeccchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCC
Confidence 3445555533 2235777774433221 1 46999999999998777777766666655555554
No 206
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=67.17 E-value=2.9 Score=30.11 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=23.5
Q ss_pred CccEEE-ecCCCc-cHHHHHHHhCCccEEEccc
Q 040291 107 KLDCFI-ADGYMA-WSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 107 ~~d~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~ 137 (160)
.||+|| .|+..- -+..-|.++|||.|.+.-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeC
Confidence 578765 888664 3667899999999997543
No 207
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=66.84 E-value=42 Score=23.68 Aligned_cols=39 Identities=18% Similarity=0.446 Sum_probs=29.1
Q ss_pred CCeEEEEc--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 3 RPHVLVLP--IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 3 ~~~i~~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.++++.+. -++.|=..-...||..|+++|++|.++=.+.
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34544444 4556778889999999999999998875543
No 208
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=66.72 E-value=57 Score=25.16 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=67.4
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcc-cHHHHHHHH
Q 040291 7 LVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRN-DFGKLFEKV 85 (160)
Q Consensus 7 ~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~~~~~~ 85 (160)
+++.....|.-.-.+..++...+||..|..+|..+......+. .+.....+|.+.+...... -+......+
T Consensus 69 lvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~g~L~~~a~~--------~~~~~i~vP~~~~~R~s~~~~~~~~l~~l 140 (308)
T TIGR02128 69 LLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGGRLEEMAKE--------RGLDVIKIPKGLQPRAAFPYLLTPLILML 140 (308)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCCcHHHHHHHh--------cCCeEEEcCCCCCCeeeHHHHHHHHHHHH
Confidence 3444455666666777788888999998888864432222211 3566677776543221100 011112222
Q ss_pred HHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhC--CccEEEccchHHHHHHHHchhhHHhcCCCC
Q 040291 86 LQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMN--VRGALFWPSSAASVALLFHIPKLIDDGIID 158 (160)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lg--iP~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (160)
...+...+++..+.++ .++ .+.+...+..+|.++. +|.+.-.+. +.-..+-.--.|.||...|
T Consensus 141 ~~~~g~d~~~~~~~l~-----~~~---~~~~~n~Ak~LA~~l~~~~pvi~~~~~--~~~~A~R~k~~l~enak~~ 205 (308)
T TIGR02128 141 IKPLGIDIEEAELLEG-----GLD---TPKLKALAKRLAEEIYNRIPVIYSSSP--TRPIAERWKNEINENAKSP 205 (308)
T ss_pred HHHcCCChHHHHHHhc-----CCc---cccccCHHHHHHHHhhCCCCEEEeCCc--cHHHHHHHHHHHHhhcCCc
Confidence 2222223343333331 233 3455566778888875 776665532 2223333344555555544
No 209
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.57 E-value=65 Score=25.73 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPD 67 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 67 (160)
++.|+.++-.+--||---|--=|..|++.|++|+++.-.+..... +.. ++++|+++.++.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e-~l~-----~hprI~ih~m~~ 70 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLE-ELL-----NHPRIRIHGMPN 70 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChH-HHh-----cCCceEEEeCCC
Confidence 367888888899999988888899999999999998765543211 111 248999998874
No 210
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.50 E-value=16 Score=22.76 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCccEEE--ecCCCc---c-HHHHHHHhCCccEEEccchHHHH
Q 040291 106 EKLDCFI--ADGYMA---W-SMEVAKKMNVRGALFWPSSAASV 142 (160)
Q Consensus 106 ~~~d~vI--~D~~~~---~-~~~~A~~lgiP~i~~~~~~~~~~ 142 (160)
.+.|+|| +|...- | +...|++.|+|++..-..+...+
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 3578776 676542 2 35789999999999986665543
No 211
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=66.27 E-value=12 Score=30.14 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+||++|.+. ....+|+++|+|.+.+.
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 4799999886 45678999999998773
No 212
>PRK06179 short chain dehydrogenase; Provisional
Probab=66.18 E-value=15 Score=26.95 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|...+.++++. +.|-+ =..++++|+++|++|+.+.-.
T Consensus 1 m~~~~~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 54445556653 44544 368899999999999887653
No 213
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=66.01 E-value=66 Score=25.57 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCccEEEecCCCcc-----H-HHHHHHhCCccEEEccchHHHHHHHHchhhHHhcC
Q 040291 106 EKLDCFIADGYMAW-----S-MEVAKKMNVRGALFWPSSAASVALLFHIPKLIDDG 155 (160)
Q Consensus 106 ~~~d~vI~D~~~~~-----~-~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~ 155 (160)
.+.|.+|.=..... . ..+++++++|.++.---+...+...+.+-+..++|
T Consensus 184 ~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaGFEp~DiL~ai~~lv~q~~~g 239 (364)
T PRK15062 184 LRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAGFEPLDILQSILMLVRQLEEG 239 (364)
T ss_pred CCccEEEecCEeEEEeccchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCC
Confidence 46787774433221 2 46999999999998777777666666555555554
No 214
>PRK05920 aromatic acid decarboxylase; Validated
Probab=65.70 E-value=11 Score=27.27 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+||++.-.+ .+...=...+.++|.+.|++|+++.|+.-.+.+
T Consensus 4 krIllgITG-siaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAITG-ASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEEeC-HHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 566655444 444467889999999999999999998765544
No 215
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=65.40 E-value=13 Score=26.29 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=25.6
Q ss_pred CCCChHH-HHHHHHHHHh-CCCEEEEEeCCCChh
Q 040291 13 AQGHVIP-LLEFSQCLAK-QGFRVTFVNTDYDHK 44 (160)
Q Consensus 13 ~~GH~~P-~l~la~~L~~-rGh~Vt~~~~~~~~~ 44 (160)
+.||... ..++.++|.+ +|++|.++.++.-.+
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 3478866 8899999984 699999999987654
No 216
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=65.33 E-value=15 Score=26.14 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=23.2
Q ss_pred CccEEEecCCCccH--HHHHHHhCCccEEEccchHH
Q 040291 107 KLDCFIADGYMAWS--MEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 107 ~~d~vI~D~~~~~~--~~~A~~lgiP~i~~~~~~~~ 140 (160)
++.-+|.|+|+..+ ..+|.++|-.+|.+-...-.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y 225 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEY 225 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHH
Confidence 45778999999653 77899999999988665443
No 217
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.30 E-value=14 Score=29.77 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+..+++++ |.|. .- +.+|+.|+++|++|+++....
T Consensus 4 ~~k~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 34566665 3444 33 499999999999999986643
No 218
>PRK13604 luxD acyl transferase; Provisional
Probab=64.85 E-value=20 Score=27.74 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=27.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
..+++..+..++-.-+.++|+.|+++|+.|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 567777777787777999999999999988764
No 219
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=64.79 E-value=13 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=32.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCChhhHH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYDHKRIM 47 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~~~~~~ 47 (160)
+||++.-.++-| ..=..+++++|.+ .|++|.++.|+.-.+.+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 467766666666 5558999999999 599999999987665443
No 220
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=64.74 E-value=14 Score=29.78 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.++|++|.+.. ...+|+++|||.+.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 57999998864 6789999999998663
No 221
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=64.62 E-value=37 Score=26.28 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=54.6
Q ss_pred CeEEEEcCCCC-C----ChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccH
Q 040291 4 PHVLVLPIPAQ-G----HVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDF 78 (160)
Q Consensus 4 ~~i~~~~~p~~-G----H~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 78 (160)
+.|++.|..+. . -..=+.+|++.|.++|.+|.++.+....+..+.-. ..+....
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~-------~~~~~~~-------------- 234 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIA-------KGLPNAV-------------- 234 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHH-------HhcCCcc--------------
Confidence 45667766233 2 23457888889999998888877763332221110 0000000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEE-ecCCCccHHHHHHHhCCccEEEccch
Q 040291 79 GKLFEKVLQVMPGKLEELIEDINSREDEKLDCFI-ADGYMAWSMEVAKKMNVRGALFWPSS 138 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI-~D~~~~~~~~~A~~lgiP~i~~~~~~ 138 (160)
. +. ....+.++..-+ ...|++| .| +...-+|..+|.|.|.++...
T Consensus 235 ~-----l~--~k~sL~e~~~li-----~~a~l~I~~D---Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 235 I-----LA--GKTSLEELAALI-----AGADLVIGND---SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred c-----cC--CCCCHHHHHHHH-----hcCCEEEccC---ChHHHHHHHcCCCEEEEECCC
Confidence 0 10 112244444433 2468887 45 334579999999999998544
No 222
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=64.53 E-value=64 Score=24.89 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=22.9
Q ss_pred eEEEEcCCCC----CCh-HHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQ----GHV-IPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~----GH~-~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+|++++.... |-. .-...|+++|.++ |+|++++..
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCC
Confidence 5666653222 322 5567999999987 777777654
No 223
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=64.39 E-value=51 Score=23.70 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=34.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHh
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIME 48 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (160)
+++.-.|+.|=..-.++++..-+++|..|.+++.+...+.+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 4556677888888888899888888999999999887665543
No 224
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=64.35 E-value=11 Score=23.97 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 18 IPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
.|.+.++++|.++|.+|.+.=+.-..
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccCh
Confidence 79999999999999998876554433
No 225
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=64.17 E-value=4 Score=30.52 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=22.8
Q ss_pred CccEEE-ecCCCcc-HHHHHHHhCCccEEEcc
Q 040291 107 KLDCFI-ADGYMAW-SMEVAKKMNVRGALFWP 136 (160)
Q Consensus 107 ~~d~vI-~D~~~~~-~~~~A~~lgiP~i~~~~ 136 (160)
.||+|| .|+...- +..-|.++|||.|.+.-
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~D 149 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCD 149 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEec
Confidence 577655 8886643 56679999999999864
No 226
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=64.16 E-value=24 Score=22.81 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=28.1
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 7 LVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 7 ~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+++..+..+.-.-+..+++.|+++|+.|..+..+.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 36 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPG 36 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45556667778889999999999999999886544
No 227
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=64.05 E-value=67 Score=24.96 Aligned_cols=139 Identities=11% Similarity=0.103 Sum_probs=69.4
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHH-HHHHHH
Q 040291 7 LVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFG-KLFEKV 85 (160)
Q Consensus 7 ~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~-~~~~~~ 85 (160)
+++...-.|...-.+..++...+||..|..+|..+....... ..+...+.+|.+........... ..+..+
T Consensus 81 lvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~--------~~~~~~i~ip~~~~~r~s~~~ll~~l~~~l 152 (337)
T PRK08674 81 LVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAK--------EHGLPVIIVPGGYQPRAALGYLFTPLLKIL 152 (337)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHH--------hcCCeEEEeCCCCcchhhHHHHHHHHHHHH
Confidence 334445678888899999999999998888886442222211 13566777765442211101111 111111
Q ss_pred HHh-----ccHHHHHHHHHHhcCCCCCccEE-EecCCCccHHHHHHHhC--CccEEEccchHHHHHHHHchhhHHhcCCC
Q 040291 86 LQV-----MPGKLEELIEDINSREDEKLDCF-IADGYMAWSMEVAKKMN--VRGALFWPSSAASVALLFHIPKLIDDGII 157 (160)
Q Consensus 86 ~~~-----~~~~~~~ll~~l~~~~~~~~d~v-I~D~~~~~~~~~A~~lg--iP~i~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (160)
... ....++++++.+.+.. . +|. ..+.+...+..+|.+++ +|++.- ++......+.+-..+.|+...
T Consensus 153 ~~~Gl~~~~~~d~~~~~~~l~~~~--~-~~~~~~~~~~~~A~~lA~~~~~~~pv~~g--s~~~~~~a~~~~~~~~Ena~~ 227 (337)
T PRK08674 153 EKLGLIPDKSAEVLETKIVLSELA--E-GLKEKVPTLKNLAKRLAGKLYGRIPVIYG--SGLTLAVAYRWKTQINENAKY 227 (337)
T ss_pred HHcCCCccchhhHHHHHHHHHHHH--H-hhCcCCCcccCHHHHHHHHHhCCCCEEEe--CcccHHHHHHHHHHHHHhcCC
Confidence 110 0012333443332210 0 111 01244555667887776 777773 444444445555666665544
Q ss_pred C
Q 040291 158 D 158 (160)
Q Consensus 158 ~ 158 (160)
|
T Consensus 228 ~ 228 (337)
T PRK08674 228 P 228 (337)
T ss_pred c
Confidence 4
No 228
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=64.04 E-value=9.6 Score=27.98 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCEEEEEeC
Q 040291 21 LEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~ 39 (160)
..|+++|.++|++|+++..
T Consensus 30 ~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 5788999999999999874
No 229
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=64.01 E-value=14 Score=27.57 Aligned_cols=92 Identities=13% Similarity=0.175 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLF 82 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 82 (160)
.++|+++...+.| ..|++.|.++|++|++-+...+.. . . ..+..... ..+ .
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~-~--------~~~~~v~~--G~l------~------ 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P-A--------DLPGPVRV--GGF------G------ 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c-c--------cCCceEEE--CCC------C------
Confidence 3566776655555 578999999999888755544332 1 1 01222111 000 0
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccH-------HHHHHHhCCccEEEcc
Q 040291 83 EKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWS-------MEVAKKMNVRGALFWP 136 (160)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~-------~~~A~~lgiP~i~~~~ 136 (160)
..+.+++++++ .++++|| |...+++ ..+|+++|||++-|.-
T Consensus 53 ------~~~~l~~~l~~------~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 ------GAEGLAAYLRE------EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ------CHHHHHHHHHH------CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 11234455554 5777755 5555543 4678899999998864
No 230
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=63.90 E-value=11 Score=29.16 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+||.++-.+..| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 678888776666 45788999999999998764
No 231
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=63.89 E-value=25 Score=22.78 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=33.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
||++..-++.|=......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888999999999999999999999999888775
No 232
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=63.72 E-value=21 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCccEEE-ecC-CCccHHHHHHHhCCccEEE
Q 040291 106 EKLDCFI-ADG-YMAWSMEVAKKMNVRGALF 134 (160)
Q Consensus 106 ~~~d~vI-~D~-~~~~~~~~A~~lgiP~i~~ 134 (160)
.++|.|+ .+. -...+..+|.++|+|++..
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 4699998 444 3356789999999999985
No 233
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.64 E-value=9 Score=25.23 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCEEEEEe
Q 040291 19 PLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~ 38 (160)
-+..+|++|++||++|+..-
T Consensus 24 ~~~~VA~~L~e~g~dv~atD 43 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATD 43 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEe
Confidence 46889999999999888643
No 234
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=63.62 E-value=9 Score=31.53 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
||+|+-.+..| +.-|.+|+++||+||++-..+.
T Consensus 2 rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 2 RVAIAGAGLAG-----LAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred eEEEEcccHHH-----HHHHHHHHhCCCceEEEeccCc
Confidence 56665544444 6678899999999999876654
No 235
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.37 E-value=31 Score=23.20 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=37.3
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+++|++-+..+-+|-.=-.-++..|.+.|++|..+...-..+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 46889999999999999999999999999999998876654443
No 236
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=63.22 E-value=17 Score=27.46 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=32.2
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
.+|.+.-.|+.|--.-.-.|++.|.++|++|-++.-+...+
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 46788889999999999999999999999999998765543
No 237
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=62.95 E-value=33 Score=23.91 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=20.2
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+-|++ .+|+++|.++|.+|+.++.+.
T Consensus 114 gD~DF---~~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 114 RDADF---LPVINKAKENGKETIVIGAEP 139 (160)
T ss_pred ccHhH---HHHHHHHHHCCCEEEEEeCCC
Confidence 45554 557888899999999999664
No 238
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=62.77 E-value=17 Score=25.23 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCcc--HHHHHHHhCCccEEEcc
Q 040291 91 GKLEELIEDINSREDEKLDCFIADGYMAW--SMEVAKKMNVRGALFWP 136 (160)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~ 136 (160)
..++.+++ -+||+||....... ....-++.|||++.+..
T Consensus 60 ~n~E~ll~-------l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVA-------LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhc-------cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 34565554 48999997543322 33445789999988853
No 239
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=62.62 E-value=6.7 Score=30.70 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCCCccEEE--ecCCCcc-HHHHHHHhCCccEEEccc
Q 040291 92 KLEELIEDINSREDEKLDCFI--ADGYMAW-SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI--~D~~~~~-~~~~A~~lgiP~i~~~~~ 137 (160)
.+.+++++ .+||+|| .|.+... ++.+|.+++||.+.+-.+
T Consensus 58 ~~~~~~~~------~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 58 ELADVLER------EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHH------HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHh------cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 35556665 4788776 6766644 467889999998887654
No 240
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=62.61 E-value=22 Score=26.83 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCC-CCCChH---HHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 1 MNRPHVLVLPIP-AQGHVI---PLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 1 m~~~~i~~~~~p-~~GH~~---P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
|.+.+|++++.+ +.=|-. ....+.++|.++||+|.++.....
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~ 47 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED 47 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc
Confidence 446688877722 222433 668899999999999999876543
No 241
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=62.57 E-value=25 Score=22.53 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
|++.+|++++..|.|--.-.-.+-++..++|.++.+-.
T Consensus 1 m~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 77789999999998877766677777788898888743
No 242
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.17 E-value=24 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHHhcC-CCCCccEEEecCCCc----------cHHHHHHHhCCccEEEccc
Q 040291 93 LEELIEDINSR-EDEKLDCFIADGYMA----------WSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 93 ~~~ll~~l~~~-~~~~~d~vI~D~~~~----------~~~~~A~~lgiP~i~~~~~ 137 (160)
+++++..|... -.+.||.|+..--+. -+..+|+++|+|++-.+..
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 57888887532 126899998644321 1467999999999876543
No 243
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=62.05 E-value=9.2 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCEEEEEeCCC
Q 040291 22 EFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 22 ~la~~L~~rGh~Vt~~~~~~ 41 (160)
-+|..|+++||+|+++....
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999887
No 244
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=62.01 E-value=9.6 Score=28.52 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCEEEEEeCC
Q 040291 22 EFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 22 ~la~~L~~rGh~Vt~~~~~ 40 (160)
-+|..|++.||+||++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4688999999999999875
No 245
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=61.92 E-value=39 Score=21.62 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.9
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 10 PIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
-+...|.-..+.+.++.+.++|..|..++.....+
T Consensus 59 ~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 59 IISYSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp EEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred eeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 33478899999999999999999998888766554
No 246
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=61.61 E-value=18 Score=29.19 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.2
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+||++|.+.. ...+|+++|+|++.+.
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 57999999864 5789999999998653
No 247
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=61.52 E-value=4.4 Score=30.47 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=25.5
Q ss_pred CCccEEE-ecCCCc-cHHHHHHHhCCccEEEccchHH
Q 040291 106 EKLDCFI-ADGYMA-WSMEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 106 ~~~d~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~ 140 (160)
..||+|| .|+-.- .+..=|.++|||.|.+.=+.+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~d 192 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCD 192 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCC
Confidence 3689766 787653 4566799999999998655443
No 248
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=61.26 E-value=11 Score=30.14 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
|.+.||+++-.+..| +..++.|...+++||++....+
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 456788888744444 3457888766899999987654
No 249
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=60.87 E-value=16 Score=29.49 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=22.4
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+||++|.. +-+..+|+++|||.+.+.
T Consensus 354 ~~pDllig~---s~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGT---TPLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcC---CcchHHHHHcCCCEEEec
Confidence 589999977 446779999999999854
No 250
>CHL00067 rps2 ribosomal protein S2
Probab=60.86 E-value=5.4 Score=29.44 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=25.9
Q ss_pred CCccEEE-ecCCCc-cHHHHHHHhCCccEEEccchHHH
Q 040291 106 EKLDCFI-ADGYMA-WSMEVAKKMNVRGALFWPSSAAS 141 (160)
Q Consensus 106 ~~~d~vI-~D~~~~-~~~~~A~~lgiP~i~~~~~~~~~ 141 (160)
..||+|| .|+-.. -+..-|.++|||.|.+.-+....
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p 197 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDP 197 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 4688776 676653 46678999999999986654433
No 251
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=60.55 E-value=17 Score=30.17 Aligned_cols=27 Identities=4% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+||+|+.++ +...+|+++|||.+.++
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4799999886 56678999999998754
No 252
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=60.37 E-value=19 Score=26.55 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCCCCh-HHHHHHHHHHHhC--CCEEEEEeCCCChhhH
Q 040291 12 PAQGHV-IPLLEFSQCLAKQ--GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 12 p~~GH~-~P~l~la~~L~~r--Gh~Vt~~~~~~~~~~~ 46 (160)
.|.|+. .=..++.+.|.++ |++|.++.++.-.+.+
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 444555 5789999999999 9999999998755433
No 253
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=60.16 E-value=21 Score=25.38 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=24.8
Q ss_pred cEEEecCCC-ccHHHHHHHhCCccEEEccchHH
Q 040291 109 DCFIADGYM-AWSMEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 109 d~vI~D~~~-~~~~~~A~~lgiP~i~~~~~~~~ 140 (160)
.++|..++. .++..+|+++|+|.|.+.|+-..
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 577777766 45778999999999999876443
No 254
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=60.09 E-value=14 Score=28.81 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.+.+|+++-.+..| +..|..|+++|++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 46788888866667 889999999999999986544
No 255
>PRK06180 short chain dehydrogenase; Provisional
Probab=59.85 E-value=24 Score=26.20 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
..+.++++ ++.|.+ =..++++|+++|++|+.+...
T Consensus 3 ~~~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 3 SMKTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 34445555 445544 567889999999999887653
No 256
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=59.72 E-value=6.7 Score=34.67 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=45.0
Q ss_pred CCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 57 GEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 57 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+.++|-++|.+-.+.....+..++.+.+.+...+.+++-++.|+. .|.|+.|+|.... -..+...-|+..+++.
T Consensus 686 ~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~~v~dal~sLK~---gKLDAFIyDaAVL-nY~agkDegCKLvTIG 760 (1258)
T KOG1053|consen 686 YPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQPGVEDALESLKN---GKLDAFIYDAAVL-NYMAGKDEGCKLVTIG 760 (1258)
T ss_pred CCCcccccCCCCchhhhHHhccHHHHHHHHHhccCchHHHHHHHhc---ccchhHHHHHHHH-HHhhccCCCceEEEec
Confidence 3566666665442222123455566666766666778999999887 6899999996431 1223344455555543
No 257
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.69 E-value=14 Score=27.89 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|+-.+|.++-.+..| ..+|..|+++||+|+++...
T Consensus 1 ~~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 1 MDIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 555678888766666 56788999999999998764
No 258
>PRK12342 hypothetical protein; Provisional
Probab=59.64 E-value=23 Score=26.56 Aligned_cols=30 Identities=3% Similarity=-0.063 Sum_probs=22.9
Q ss_pred CccEEEecCCC-cc-----HHHHHHHhCCccEEEcc
Q 040291 107 KLDCFIADGYM-AW-----SMEVAKKMNVRGALFWP 136 (160)
Q Consensus 107 ~~d~vI~D~~~-~~-----~~~~A~~lgiP~i~~~~ 136 (160)
+||+|+..--. .. +..+|+.||+|++....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 59999965433 22 57899999999998754
No 259
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=59.53 E-value=5 Score=29.50 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEccchHH
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~~~~~~ 140 (160)
..||+|| .|+-- ..+..=|.++|||.|.+.-+.+.
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~ 190 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCD 190 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCC
Confidence 3689766 78765 34567799999999998655443
No 260
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=59.50 E-value=11 Score=29.86 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=26.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
-|+++..+..|+=.-+..+|.+||++|+-|.-+-+.+
T Consensus 101 PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrD 137 (379)
T PF03403_consen 101 PVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRD 137 (379)
T ss_dssp EEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---S
T ss_pred CEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCC
Confidence 4889999999999999999999999999888876654
No 261
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=59.11 E-value=20 Score=29.76 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=22.4
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+||+||.++ ....+|+++|||.+.+.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 4799999885 56788999999998764
No 262
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=58.93 E-value=24 Score=26.54 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=22.9
Q ss_pred CccEEEecCCCc------cHHHHHHHhCCccEEEcc
Q 040291 107 KLDCFIADGYMA------WSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 107 ~~d~vI~D~~~~------~~~~~A~~lgiP~i~~~~ 136 (160)
.||+|+..--.. -+..+|+.||+|++.+..
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 599999655332 257899999999998755
No 263
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=58.87 E-value=27 Score=22.68 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
..++.+++++.. +...++.++.|.+.|.+++++...
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 456778877666 466788999999999888886543
No 264
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=58.73 E-value=17 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
+.++++++-++..| ..+++.|.+.|++|++.
T Consensus 27 ~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 27 EGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 34677777665434 67899999999999954
No 265
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=58.61 E-value=21 Score=28.91 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEE
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALF 134 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (160)
.++|++|... +...+|+++|||++.+
T Consensus 372 ~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 372 AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 5799999774 4688999999999854
No 266
>PRK10481 hypothetical protein; Provisional
Probab=58.49 E-value=30 Score=25.49 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCCccH---HHHHHHhCCccEEEccchHH
Q 040291 93 LEELIEDINSREDEKLDCFIADGYMAWS---MEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~~~~---~~~A~~lgiP~i~~~~~~~~ 140 (160)
+.+..+++.. .+.|+||.|...+.. ..+.+.+|+|+|.....-+.
T Consensus 171 l~~aa~~L~~---~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar 218 (224)
T PRK10481 171 LIDAGKELLD---QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVAR 218 (224)
T ss_pred HHHHHHHhhc---CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHH
Confidence 4444555543 579999999977552 46889999999987655443
No 267
>PRK14098 glycogen synthase; Provisional
Probab=58.42 E-value=11 Score=30.86 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=26.9
Q ss_pred CeEEEEcC---C--CC-CChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPI---P--AQ-GHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~---p--~~-GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
++|++++. | =. |=-.-+-.|.++|+++||+|.++.+.
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 67776652 1 12 33356778999999999999999885
No 268
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=58.38 E-value=15 Score=27.09 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|.+.-+|+.|-..-.-+|+++|.+++|+|..++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 4455599999999999999999999999887654
No 269
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.17 E-value=16 Score=27.58 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+|.++-.+..| ..+|..|++.||+|+++...
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 56666655555 56788899999999999863
No 270
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=57.98 E-value=12 Score=28.97 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 040291 21 LEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~ 40 (160)
...|++|++||.+|.+++=.
T Consensus 63 KayA~eLAkrG~nvvLIsRt 82 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRT 82 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 46899999999998877643
No 271
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=57.87 E-value=19 Score=29.90 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.1
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEE
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALF 134 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (160)
.++|++|.+. .+..+|+++|||.+.+
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 4789999774 4678999999999755
No 272
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=57.64 E-value=11 Score=30.00 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=25.0
Q ss_pred EEEcCC-C--CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 7 LVLPIP-A--QGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 7 ~~~~~p-~--~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
++=|++ . -||+.|++.+ +.|.+.||++.++....
T Consensus 36 G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 36 GFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred eeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 445554 2 3999987665 68999999999987653
No 273
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.34 E-value=27 Score=24.94 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=32.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
|+++-..|.|=..-..+||..+..+|.+|.+++.+.++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 56777888999999999999999999999999998775
No 274
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=57.26 E-value=20 Score=25.75 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+..+++++-.+..| ...++.|.++|++||++++..
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 34566666543333 667889999999999997653
No 275
>PLN02240 UDP-glucose 4-epimerase
Probab=57.16 E-value=24 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
...+|++. ++.|.+- ..+++.|.++||+|+.+.
T Consensus 4 ~~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 4 MGRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEe
Confidence 34555553 5566553 467899999999999885
No 276
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=57.15 E-value=31 Score=24.91 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCC-CCCccEEEecCCCccHHHHHHHhCCccEEEccch
Q 040291 92 KLEELIEDINSRE-DEKLDCFIADGYMAWSMEVAKKMNVRGALFWPSS 138 (160)
Q Consensus 92 ~~~~ll~~l~~~~-~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~ 138 (160)
.++.+++...... +.+..+||+|---..+..-|++.|||...+..-.
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 4666666654210 1357899999877788999999999998876543
No 277
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=57.12 E-value=13 Score=28.02 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+-++++..+.| + =.++|+.|++||++|.++.=.
T Consensus 6 ~~~~lITGASsG-I--G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 6 GKTALITGASSG-I--GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CcEEEEECCCch-H--HHHHHHHHHHCCCEEEEEeCc
Confidence 344555544443 1 368999999999999998754
No 278
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.79 E-value=19 Score=27.51 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
++++|.++-.+..| ..+|+.|+++||+|+++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 35678888665555 478999999999999887543
No 279
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=56.72 E-value=23 Score=29.40 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEE
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALF 134 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (160)
.+||+||.++ ....+|+++|||.+.+
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 4799999775 4677999999999866
No 280
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=56.67 E-value=21 Score=29.40 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
..||++.-.++-+ ..=...|.++|.++|++|.++.|+.-.+.+
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv 112 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFV 112 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHh
Confidence 4567766555433 346789999999999999999998755443
No 281
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=56.62 E-value=15 Score=25.28 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 12 PAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 12 p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
++.|++- ..++++|.++||+|+.++-...
T Consensus 5 GatG~vG--~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 5 GATGFVG--RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp TTTSHHH--HHHHHHHHHTTSEEEEEESSGG
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEecCch
Confidence 4445443 4589999999999999886644
No 282
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.46 E-value=26 Score=28.34 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.++|++|... +...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 4789999775 46789999999998653
No 283
>PRK07236 hypothetical protein; Provisional
Probab=56.36 E-value=15 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|+..+|+|+-.+-.| +.+|..|+++|++|+++=-
T Consensus 4 ~~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEec
Confidence 567788888755333 6788899999999999864
No 284
>PRK05993 short chain dehydrogenase; Provisional
Probab=56.32 E-value=29 Score=25.80 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|...+.++++.+ .|-+- ..++++|+++|++|..+.-
T Consensus 1 m~~~k~vlItGa-sggiG--~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 1 MDMKRSILITGC-SSGIG--AYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCCCCEEEEeCC-CcHHH--HHHHHHHHHCCCEEEEEEC
Confidence 544555666633 33222 5688999999999988754
No 285
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=55.99 E-value=28 Score=26.26 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
+|+++-.++.| ..+|..|++.||+|+++..
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 57777655555 3578889999999999887
No 286
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=55.95 E-value=24 Score=26.08 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCCcc--HHHHHHHhCCccEEEccc
Q 040291 92 KLEELIEDINSREDEKLDCFIADGYMAW--SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~~ 137 (160)
.+.++.+.+++ .+..||+.+..... +..+|++.|+|.+.+.+.
T Consensus 187 ~l~~l~~~ik~---~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 187 DLAELIKLIKE---NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHH---TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHhhh---cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 35556665555 58899999987754 467999999999988776
No 287
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=55.90 E-value=18 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
+||+++...+.| ..|++.|.++|+ |++-...++.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g 34 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYG 34 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhh
Confidence 356666544444 579999999998 6654443343
No 288
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=55.70 E-value=33 Score=26.37 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=31.3
Q ss_pred eEEEEc-CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLP-IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~-~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
|++++. -+|-|=..-...+|-+++++|++|-+++++..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 555555 566788899999999999999999999998764
No 289
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=55.44 E-value=30 Score=26.79 Aligned_cols=39 Identities=5% Similarity=0.082 Sum_probs=28.8
Q ss_pred CeEEEEcC--CCCCCh-HHHHHHHHHHHhC--CCEEEEEeCCCC
Q 040291 4 PHVLVLPI--PAQGHV-IPLLEFSQCLAKQ--GFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~~--p~~GH~-~P~l~la~~L~~r--Gh~Vt~~~~~~~ 42 (160)
+||+++.. +..|=+ .-+..++++|.++ ||+|++++....
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDK 44 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCC
Confidence 46776654 333444 7779999999999 899999887654
No 290
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=55.19 E-value=17 Score=25.21 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
..+|+++..++. .=-=-+.+||.|+++|++|+++.
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 356777775542 11335778999999999999944
No 291
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=54.78 E-value=19 Score=29.50 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=21.9
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEE
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALF 134 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (160)
.++|++|.. ++...+|+++|||++-.
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEEc
Confidence 579999987 66789999999999843
No 292
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=54.68 E-value=26 Score=27.72 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=27.5
Q ss_pred CCeEEEEc-CCCCCChHHHHHHHHHHHhCCC---EEEEE
Q 040291 3 RPHVLVLP-IPAQGHVIPLLEFSQCLAKQGF---RVTFV 37 (160)
Q Consensus 3 ~~~i~~~~-~p~~GH~~P~l~la~~L~~rGh---~Vt~~ 37 (160)
.+||++++ .-|.||......|.++|.++|. +|.++
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 46888887 5567999999999999998864 45544
No 293
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=54.66 E-value=43 Score=19.72 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
+++...++.|=-.-...+++.|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345556678888889999999999999998765
No 294
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.32 E-value=1.5e+02 Score=25.87 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=30.6
Q ss_pred CeEEEEc--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVLVLP--IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.+++.++ -++.|--.-...||..|+..|.+|-++=.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3555444 56779999999999999999999888766544
No 295
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=54.30 E-value=22 Score=24.93 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=33.1
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
..++++-.+|.|=..-...+++++.++|+.|.|++..+....+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 4688888899998888999999999999999999876554443
No 296
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=54.24 E-value=32 Score=26.64 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCCCC-----hHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 1 MNRPHVLVLPIPAQGH-----VIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH-----~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|.+.||+++. +|.|. +..-..++++|.+.||+|..+-...
T Consensus 1 m~~~~i~vl~-GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLF-GGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEe-CCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 7788988887 44443 3566789999999999999775443
No 297
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.21 E-value=30 Score=23.23 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+--+...+=++..|.++|++||+..++.-
T Consensus 15 P~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 15 PPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred CccchHHHHHHHHhhccCccEEEecCHhh
Confidence 34556677788999999999999988643
No 298
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=54.16 E-value=13 Score=27.15 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCEEEEEeCCCC
Q 040291 21 LEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
..+|+.|.++||+|+.+-....
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHH
Confidence 5799999999999999877643
No 299
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=54.14 E-value=47 Score=22.70 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
+++.-.||.|=......++..++++|.+|.++..+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 466778999999999999999999999999999876543
No 300
>PLN00016 RNA-binding protein; Provisional
Probab=53.98 E-value=24 Score=27.71 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=24.5
Q ss_pred CeEEEEc--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 4 PHVLVLP--IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 4 ~~i~~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.+|+++. +++.|-+- ..|+++|.++||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 4576661 23444443 567899999999999987543
No 301
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=53.94 E-value=26 Score=21.03 Aligned_cols=31 Identities=3% Similarity=0.073 Sum_probs=21.9
Q ss_pred CCccEEEecCCC--ccHHHHHHHhCCccEEEcc
Q 040291 106 EKLDCFIADGYM--AWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI~D~~~--~~~~~~A~~lgiP~i~~~~ 136 (160)
.+..-||.+.-. +-+..+|+++|||.++=..
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 356777766643 4578899999999998554
No 302
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.75 E-value=19 Score=28.88 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=27.2
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
|...+|+++-.+..| +.+|+.|.++|++|+..-
T Consensus 1 ~~~~~i~iiGlG~~G-----~slA~~l~~~G~~V~g~D 33 (418)
T PRK00683 1 MGLQRVVVLGLGVTG-----KSIARFLAQKGVYVIGVD 33 (418)
T ss_pred CCCCeEEEEEECHHH-----HHHHHHHHHCCCEEEEEe
Confidence 777889999888777 358999999999988654
No 303
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=53.66 E-value=23 Score=25.14 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCh-HHHHHHHHHHHhCCCEEEEEe
Q 040291 6 VLVLPIPAQGHV-IPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 6 i~~~~~p~~GH~-~P~l~la~~L~~rGh~Vt~~~ 38 (160)
+++.++|+.=|+ .|.-+++..|.+.|.++.++.
T Consensus 36 ~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 36 VAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 567779999999 899999999999998877654
No 304
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=53.56 E-value=28 Score=25.47 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCcc--H-HHHHHHhCCccEEEccc
Q 040291 91 GKLEELIEDINSREDEKLDCFIADGYMAW--S-MEVAKKMNVRGALFWPS 137 (160)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~--~-~~~A~~lgiP~i~~~~~ 137 (160)
..++.++. -+||+||....... . ..+.+..|||++.+...
T Consensus 65 ~n~E~i~~-------l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 65 PNYEKIAA-------LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCHHHHHh-------cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 34565554 48999997654432 2 23445589999988654
No 305
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=53.48 E-value=58 Score=23.26 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=23.7
Q ss_pred CCccEEEecCCC--ccHHHHHHHhCCccEEEccch
Q 040291 106 EKLDCFIADGYM--AWSMEVAKKMNVRGALFWPSS 138 (160)
Q Consensus 106 ~~~d~vI~D~~~--~~~~~~A~~lgiP~i~~~~~~ 138 (160)
-+||+||..... .....-..+.+||++.+....
T Consensus 59 l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 59 LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 489999987766 334556678899999998865
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=53.24 E-value=40 Score=25.48 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=33.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
-++++..+|.|=..-...||..|+++|.+|.++..+.+.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 356777888899999999999999999999999988653
No 307
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.17 E-value=21 Score=28.82 Aligned_cols=28 Identities=18% Similarity=-0.057 Sum_probs=23.1
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
.+||++|.... ...+|+++|||...+..
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~~ 395 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMHS 395 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCCc
Confidence 58999998865 66789999999987654
No 308
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=53.14 E-value=32 Score=26.73 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCCC-----hHHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLPIPAQGH-----VIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH-----~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|.+.||+++. +|.|. +..-..++++|.+.||+|..+-.
T Consensus 1 m~~~~i~vl~-GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i 43 (343)
T PRK14568 1 MNRIKVGILF-GGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGI 43 (343)
T ss_pred CCCcEEEEEE-CCCCCchHHHHHhHHHHHHhhcccCCeEEEEEE
Confidence 7788988887 44444 45667888999999999997643
No 309
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=53.08 E-value=38 Score=25.23 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=35.1
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
|++-+++.-.=+|.|=......||..|+++|.+|.++-++...
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 6666666667788899999999999999999999988766443
No 310
>PRK12829 short chain dehydrogenase; Provisional
Probab=53.07 E-value=42 Score=24.35 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
..++++. ++.|.+ -..+++.|+++|++|+.+.-.
T Consensus 11 ~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 11 GLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3444443 444555 377899999999998877643
No 311
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=53.00 E-value=15 Score=24.21 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 17 VIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 17 ~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+.|+.++.-.+.-|||++|++-+.-+...+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 457778888888999999999887666543
No 312
>PRK11914 diacylglycerol kinase; Reviewed
Probab=52.86 E-value=55 Score=24.90 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCCCh---HHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 1 MNRPHVLVLPIPAQGHV---IPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~---~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|+..+++++-.|..|.- .-..++.+.|.++|++++++.+..
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 44567777776666543 345578889999999998766654
No 313
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=52.80 E-value=27 Score=26.23 Aligned_cols=29 Identities=14% Similarity=-0.096 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 14 QGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.|--.-...++++|+++||+|++++....
T Consensus 15 gG~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 15 TGIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred CcHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 44456689999999999999999887654
No 314
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=52.67 E-value=36 Score=24.25 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=23.9
Q ss_pred CCccEEE-ecCC-CccHHHHHHHhCCccEEEccc
Q 040291 106 EKLDCFI-ADGY-MAWSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI-~D~~-~~~~~~~A~~lgiP~i~~~~~ 137 (160)
.++|+|+ .+.- .+.+..+|.++|+|.+...-.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 4789998 4442 255778999999999987554
No 315
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=52.23 E-value=35 Score=25.33 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.|++.-=+|.|-..-...||..|+++|.+|-++=.+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 466676778899999999999999999999887443
No 316
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=52.18 E-value=37 Score=25.38 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCE
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFR 33 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~ 33 (160)
+=|++.-.|..|--.-..+|.++|.+||++
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 346777799999999999999999999976
No 317
>PRK09072 short chain dehydrogenase; Provisional
Probab=51.72 E-value=45 Score=24.35 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+.++++ ++.|.+- ..+++.|+++|++|+++.-.
T Consensus 6 ~~vlIt-G~s~~iG--~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLT-GASGGIG--QALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEE-CCCchHH--HHHHHHHHHCCCEEEEEECC
Confidence 344444 4444433 78899999999999987643
No 318
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=51.63 E-value=28 Score=26.30 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
.+++++. ++. =+.|++.++++|+++|.+|+++......
T Consensus 99 ~~~llIa-GGi-GiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVG-GGV-GIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEe-CcC-cHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 3566665 333 4899999999999999999988765543
No 319
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=51.61 E-value=14 Score=25.03 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 17 VIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 17 ~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+--.+=++..|.++||+|++..++.-.+.+
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 344677888999999999999998765544
No 320
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=51.61 E-value=29 Score=26.55 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+|.|+-.+..| .++|+.|.++||+|++..-..
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 45666555555 478999999999999986543
No 321
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=51.51 E-value=57 Score=23.62 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=37.4
Q ss_pred hCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCc---ccHHHHHHHHHHhccHHHHHHHHHHhcCCC
Q 040291 29 KQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDR---NDFGKLFEKVLQVMPGKLEELIEDINSRED 105 (160)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 105 (160)
..|.+++..+....++.+.+. .|+.+...+.++++.... ...+++ ......+..++++++|.+..+
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~--------~G~~~~~~~S~feEnl~k~~~~~p~~y---v~~tA~~KA~~I~erL~~~Ed 75 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE--------MGLNLEVVVSTFEENLIKSSFETPEDY---VVETAKQKAEEIIERLGDGED 75 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH--------cCCceEEEeccchhhchhhccCCHHHH---HHHHHHHHHHHHHHHhhcccc
Confidence 467888887776666656543 356666655554433111 223332 223333345677777764322
Q ss_pred CCccEEE
Q 040291 106 EKLDCFI 112 (160)
Q Consensus 106 ~~~d~vI 112 (160)
+.+|.+|
T Consensus 76 ~~~~~vi 82 (209)
T KOG1509|consen 76 SFPDVVI 82 (209)
T ss_pred CCccccc
Confidence 2244444
No 322
>PRK09739 hypothetical protein; Provisional
Probab=51.41 E-value=60 Score=23.00 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=24.3
Q ss_pred CCCCeEEEEc-CCCCCC-h-HHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLP-IPAQGH-V-IPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~-~p~~GH-~-~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|..++|+++. +|-.+- - .-.-.+.+++.++|++|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 5567777664 454322 2 2344566677778999998653
No 323
>PTZ00445 p36-lilke protein; Provisional
Probab=51.38 E-value=21 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=23.5
Q ss_pred CChHH-HHHHHHHHHhCCCEEEEEeCCCC
Q 040291 15 GHVIP-LLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 15 GH~~P-~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+|..| +..+.++|.++|..|+++|-.+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 45666 88999999999999999987654
No 324
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=51.37 E-value=1.1e+02 Score=23.52 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=54.8
Q ss_pred CeEE-EEcCCC-CCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHH
Q 040291 4 PHVL-VLPIPA-QGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKL 81 (160)
Q Consensus 4 ~~i~-~~~~p~-~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (160)
++|+ +++... .|--.-+..|++.|.++|+++++++...... ..... ...++.+..++.. .. ..+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~-~~~~~-----~~~~i~~~~~~~~--~~---~~~~-- 68 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSA-FRKRI-----QRPDVAFYALHKQ--PG---KDVA-- 68 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCCh-hHHHH-----HhcCceEEEeCCC--CC---CChH--
Confidence 3455 344443 4555899999999999999998887433221 11111 0136776665421 10 1111
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEecCCCc-cHHHHHHHhCCcc
Q 040291 82 FEKVLQVMPGKLEELIEDINSREDEKLDCFIADGYMA-WSMEVAKKMNVRG 131 (160)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~~~~~A~~lgiP~ 131 (160)
.+ ..+..++++ .+||+|-+-.... ++..++...++|.
T Consensus 69 --~~-----~~l~~~l~~------~~~Divh~~~~~~~~~~~~~~~~~~~~ 106 (374)
T TIGR03088 69 --VY-----PQLYRLLRQ------LRPDIVHTRNLAALEAQLPAALAGVPA 106 (374)
T ss_pred --HH-----HHHHHHHHH------hCCCEEEEcchhHHHHHHHHHhcCCCe
Confidence 11 023334444 5789887644322 2344566778885
No 325
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=51.35 E-value=33 Score=20.64 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=30.1
Q ss_pred eEEEEcCCCCCChHHH-HHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQGHVIPL-LEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~-l~la~~L~~rGh~Vt~~~~~ 40 (160)
||++++..|.|.-.-. ..+=+.+.++|.+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6889998998888877 88888899999888876665
No 326
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=51.02 E-value=36 Score=26.53 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=29.7
Q ss_pred EEE--EcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 6 VLV--LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 6 i~~--~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|.+ ++.+|.|=.--...|++.|.++|++|.+++-
T Consensus 52 IsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsR 87 (325)
T PRK00652 52 IVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSR 87 (325)
T ss_pred EEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECC
Confidence 555 7789999999999999999999999998763
No 327
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=51.01 E-value=35 Score=28.88 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
..++++++ ++.|.+ =..++++|+++|++|+.+.-
T Consensus 79 ~gKvVLVT-GATGgI--G~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 79 DEDLAFVA-GATGKV--GSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred CCCEEEEE-CCCCHH--HHHHHHHHHHCCCeEEEEeC
Confidence 45666665 455654 46778999999999998754
No 328
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.94 E-value=30 Score=23.09 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCC-EEEEEeC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGF-RVTFVNT 39 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~~~ 39 (160)
+.+++.++.-..+|..-+-.+.++|.++|. ++.++..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 467888888888899889999999999886 5666554
No 329
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=50.86 E-value=42 Score=22.53 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=28.0
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+.|.++-+...|=..-...|.+.|.+||++|.++-..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 3567777888888999999999999999999966443
No 330
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=50.72 E-value=45 Score=25.41 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=30.9
Q ss_pred CCCCeEE-EEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVL-VLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~-~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|.++++. +..=+|-|=..-...||..|+++|.+|-++-.+
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5565544 445566778889999999999999999998443
No 331
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=50.67 E-value=19 Score=26.43 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCEEEEEe
Q 040291 21 LEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~ 38 (160)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 568899999999999975
No 332
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=50.54 E-value=27 Score=25.84 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 17 VIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 17 ~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
+-+.+.+.+.|.++|++|-++|.....
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEE 148 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 457889999999999999999998643
No 333
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=50.24 E-value=44 Score=22.83 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=29.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+.++-+.+.|=..-...|+++|.++|++|.++-+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45666778888888899999999999999998754
No 334
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=50.12 E-value=52 Score=24.80 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCCcc--HHHHHHHhCCccEEEccc
Q 040291 92 KLEELIEDINSREDEKLDCFIADGYMAW--SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~~ 137 (160)
.+.++.+.+++ .+..||+++..... +..+|++.|++.+.+.+.
T Consensus 208 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 208 QLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 35566666654 57899999997754 456999999999887653
No 335
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=50.11 E-value=44 Score=25.44 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=31.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+|+++-=+|.|=..-...||.+|+++|.+|-++=.+
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 478888888899999999999999999999887544
No 336
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=49.88 E-value=20 Score=31.17 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=27.0
Q ss_pred CCccEEEecCCCcc--HHHHHHHhCCccEEEccc
Q 040291 106 EKLDCFIADGYMAW--SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~~ 137 (160)
.-+|++|+|.-|.. ...+|+++|.+.|.+.+-
T Consensus 264 G~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r 297 (731)
T cd01916 264 GIADVVVVDEQCIRADILEEAQKLGIPVIATNDK 297 (731)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEechh
Confidence 46899999997744 578999999999998763
No 337
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=49.73 E-value=28 Score=26.21 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 20 LLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
-..|+++|...++.+++.+..++-.
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~ 38 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGA 38 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccc
Confidence 4688999999987877776665543
No 338
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=49.72 E-value=32 Score=27.22 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=19.2
Q ss_pred CCccEEEecCCCccHHHHH--HHhCCccEEEccc
Q 040291 106 EKLDCFIADGYMAWSMEVA--KKMNVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A--~~lgiP~i~~~~~ 137 (160)
.+||+||.+.-......+. ..++||.+.+.+-
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATVMTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCC
Confidence 6899999864333222222 3458998766443
No 339
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=49.49 E-value=1.8e+02 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=28.3
Q ss_pred eEEEEc-CCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 5 HVLVLP-IPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 5 ~i~~~~-~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
.|.+.+ -+..|=..-.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 566664 45568889999999999999999998654
No 340
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=49.23 E-value=17 Score=27.51 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=24.3
Q ss_pred EEEcCC-C--CCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 7 LVLPIP-A--QGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 7 ~~~~~p-~--~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
++-|++ . -||+.| +...+.|.+.||++.++..
T Consensus 5 G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 5 GIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred eEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 344554 2 399999 7778899999999988665
No 341
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=49.04 E-value=2.2 Score=21.48 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=15.2
Q ss_pred EcCCCCCChHHHHHHHHHHHhCC
Q 040291 9 LPIPAQGHVIPLLEFSQCLAKQG 31 (160)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rG 31 (160)
=++|++|-+||-+++---|-+.|
T Consensus 16 PTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CcCCCCCCCCccccccccCCCCC
Confidence 35888999988776654444444
No 342
>PLN02293 adenine phosphoribosyltransferase
Probab=49.00 E-value=52 Score=23.38 Aligned_cols=30 Identities=3% Similarity=-0.013 Sum_probs=21.8
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~ 135 (160)
.++|+|+ .|.-. .++..+|.++|+|++...
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 4689888 44422 457889999999987643
No 343
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=48.95 E-value=43 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
.|++.-=+|-|=..-...||.+|+++|++|-++
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 466665666777799999999999999999887
No 344
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.73 E-value=44 Score=20.10 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=26.1
Q ss_pred eEEEEcCCCC--CChHHHHHHHHHHHhCCCEEEEEe
Q 040291 5 HVLVLPIPAQ--GHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 5 ~i~~~~~p~~--GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
+++++|.... .+..-...++..|.+.|.+|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5788886643 456678889999999999998844
No 345
>PRK06835 DNA replication protein DnaC; Validated
Probab=48.67 E-value=36 Score=26.54 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=35.0
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
..++++-.+|.|=..=...+|++|.++|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4577888888888888889999999999999998886654433
No 346
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=48.67 E-value=33 Score=27.42 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+|.++-.+..| ..+|..|+++||+|+.+-..
T Consensus 2 kI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 56676555444 67899999999999988654
No 347
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.38 E-value=25 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCEEEEEeCCCCh
Q 040291 21 LEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
..|+++|+..||+|++.+.....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCChh
Confidence 46889999999999998776553
No 348
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=48.37 E-value=54 Score=26.74 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=35.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
.|+++-.+|.|=..-...||..|.++|++|.++..+.+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 4677778999999999999999999999999999887654
No 349
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=48.33 E-value=39 Score=24.62 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+.+|.+-..||.|-..-|+.=|++|.++|.+|.+-.-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 35677888999999999999999999999999984443
No 350
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=48.30 E-value=51 Score=22.35 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=30.2
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHH
Q 040291 9 LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIM 47 (160)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (160)
+.++..--+.|..-++...+++|++|++.-|..-...+.
T Consensus 9 l~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~ 47 (137)
T COG2210 9 LASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALR 47 (137)
T ss_pred EeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhh
Confidence 334555677999999999999999999999876554443
No 351
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=48.23 E-value=27 Score=28.04 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=26.8
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|++-.|+++-.+..| +..|..|+++|++|+++--
T Consensus 1 ~~~~dvvVIG~GpaG-----~~aA~~l~~~g~~V~liE~ 34 (438)
T PRK07251 1 MLTYDLIVIGFGKAG-----KTLAAKLASAGKKVALVEE 34 (438)
T ss_pred CCccCEEEECCCHHH-----HHHHHHHHhCCCEEEEEec
Confidence 666778888766556 6778899999999999854
No 352
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=48.13 E-value=44 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCcc-HHHHHHHhCCccEEEccc
Q 040291 91 GKLEELIEDINSREDEKLDCFIADGYMAW-SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~-~~~~A~~lgiP~i~~~~~ 137 (160)
..++.+++ -+||+||....... ...--++.|+|++.+...
T Consensus 51 ~n~E~l~~-------l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 51 PNVEKIVA-------LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred CCHHHHhc-------cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 34566554 48999997653322 334457789998887643
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=48.05 E-value=40 Score=27.43 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=35.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
-|+++-.+|.|=..-...||..|.++|++|.+++.+.+..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 3667778999999999999999999999999999987753
No 354
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=48.02 E-value=21 Score=26.99 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 040291 21 LEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~ 40 (160)
+..|.+|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 56788999999999998776
No 355
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=48.01 E-value=21 Score=26.65 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=26.1
Q ss_pred CeEEEEcCCCC--CChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQ--GHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~--GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+|++++.++- |+ -+.+||.|.++|++|+++...
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 96 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYPK 96 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEcC
Confidence 46888876653 33 467899999999999998743
No 356
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=47.92 E-value=34 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
..+++++-.+..| ..-++.|.+.|.+||++.+...
T Consensus 9 gk~vlVvGgG~va-----~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVA-----LRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCEEEEEcCCCC
Confidence 4466666433322 6677899999999999987654
No 357
>PRK04148 hypothetical protein; Provisional
Probab=47.91 E-value=23 Score=23.86 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+++.+-.+ .| ..+|+.|++.||+|+.+=..
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 345555544 33 35788999999999976443
No 358
>PHA02857 monoglyceride lipase; Provisional
Probab=47.81 E-value=45 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
.-++++..+..++..-+..+++.|+++|+.|..+-
T Consensus 25 ~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D 59 (276)
T PHA02857 25 KALVFISHGAGEHSGRYEELAENISSLGILVFSHD 59 (276)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhCCCEEEEcc
Confidence 35777777888899999999999999999988763
No 359
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=47.64 E-value=99 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=24.9
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 10 PIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
+-++.|-..-...|++.|.++|.+|-++-
T Consensus 7 t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 7 TDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 35567889999999999999999998864
No 360
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=47.63 E-value=39 Score=28.21 Aligned_cols=41 Identities=10% Similarity=0.398 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEEccc
Q 040291 91 GKLEELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 137 (160)
...+..++.+++ .++++||.|.. +..+|+++|++.+.+.+.
T Consensus 132 ~e~~~~~~~l~~---~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRA---RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHH---CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 345666777765 57999999974 468999999999988764
No 361
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.54 E-value=1.9e+02 Score=25.21 Aligned_cols=39 Identities=18% Similarity=0.431 Sum_probs=30.4
Q ss_pred CeEEEEc--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVLVLP--IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.++++++ .|+.|=..-...||..|+..|.+|-++=.+..
T Consensus 531 ~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4566665 45668888899999999999999998866543
No 362
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=47.53 E-value=58 Score=20.84 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+|++++..|.|--.-.-..=++..++|-++++-...
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 5899999999998888888888888899999985544
No 363
>PLN02891 IMP cyclohydrolase
Probab=47.41 E-value=1.1e+02 Score=25.83 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCC
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPD 67 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 67 (160)
=..+||+.|.+.|+++ ++|.+..+.+.. .|+.+..+.+
T Consensus 34 gi~~fAk~L~~~gveI--iSTgGTak~L~e---------~Gi~v~~Vsd 71 (547)
T PLN02891 34 DLALLANGLQELGYTI--VSTGGTASALEA---------AGVSVTKVEE 71 (547)
T ss_pred CHHHHHHHHHHCCCEE--EEcchHHHHHHH---------cCCceeeHHh
Confidence 4678999999987665 678777766654 4788777654
No 364
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.10 E-value=32 Score=28.26 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 2 NRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
+..+|+++-.+..| +.+|+.|.++|++|+..=.
T Consensus 6 ~~~~i~v~G~G~sG-----~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 6 QGPMVLVLGLGESG-----LAMARWCARHGARLRVADT 38 (498)
T ss_pred CCCEEEEEeecHhH-----HHHHHHHHHCCCEEEEEcC
Confidence 34578888877777 3499999999999987543
No 365
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=47.06 E-value=32 Score=25.58 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=28.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCChh
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQG--FRVTFVNTDYDHK 44 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~~~~~~~~ 44 (160)
++++. ++.| +.|+.++++++.+.| .+|+++......+
T Consensus 110 vllia-gGtG-~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~ 148 (252)
T COG0543 110 VLLIA-GGTG-IAPLYAIAKELKEKGDANKVTLLYGARTAK 148 (252)
T ss_pred EEEEe-cccC-HhHHHHHHHHHHhcCCCceEEEEEeccChh
Confidence 44443 3444 679999999999999 9999998766543
No 366
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=47.04 E-value=63 Score=23.31 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=23.6
Q ss_pred CCccEEEecCCCcc----HHHHHHHhCCccEEEccc
Q 040291 106 EKLDCFIADGYMAW----SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI~D~~~~~----~~~~A~~lgiP~i~~~~~ 137 (160)
.++|.||..+.... ...-+.+-|||++.+...
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 47999998776642 244567779999998765
No 367
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=47.00 E-value=65 Score=22.96 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|+++..++.-|---+..+++.|++.|.+|.+++-
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4455555555544455666666666666666543
No 368
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=46.95 E-value=51 Score=26.43 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 040291 21 LEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~ 40 (160)
..+|++|..||.+|+++...
T Consensus 215 ~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 215 LALAEAAYKRGADVTLITGP 234 (390)
T ss_pred HHHHHHHHHCCCEEEEeCCC
Confidence 46899999999999998743
No 369
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=46.91 E-value=46 Score=25.67 Aligned_cols=32 Identities=25% Similarity=0.049 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
++|++. ++.|.+- ..++++|+++||+|+.+.-
T Consensus 5 k~ilIt--GatG~IG--~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVT--GHTGFKG--SWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CEEEEE--CCCChhH--HHHHHHHHHCCCEEEEEeC
Confidence 455444 3444333 6789999999999987753
No 370
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=46.90 E-value=54 Score=25.86 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.2
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.-|.++-.++.|=..-...|.++|.++|++|-++-..
T Consensus 206 ~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 206 PLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 3466777899999999999999999999999998754
No 371
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=46.86 E-value=22 Score=28.88 Aligned_cols=28 Identities=21% Similarity=0.038 Sum_probs=22.5
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
.++|++|... +...+|+++|||.+.+..
T Consensus 386 ~~pdllig~s---~~~~~A~~lgip~~~~~~ 413 (443)
T TIGR01862 386 LKPDIIFSGI---KEKFVAQKLGVPYRQMHS 413 (443)
T ss_pred cCCCEEEEcC---cchhhhhhcCCCeEecCC
Confidence 4789999764 567899999999987643
No 372
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=46.84 E-value=21 Score=21.77 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 040291 20 LLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+-.+.++|.++|++|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578899999999999877654
No 373
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=46.80 E-value=23 Score=28.55 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
|.++|||++- +|.|.+.-...|++.+ . +.+||++....+
T Consensus 1 ~~~~~iVIlG-gGfgGl~~a~~l~~~~-~-~~~itLVd~~~~ 39 (405)
T COG1252 1 MMKKRIVILG-GGFGGLSAAKRLARKL-P-DVEITLVDRRDY 39 (405)
T ss_pred CCCceEEEEC-CcHHHHHHHHHhhhcC-C-CCcEEEEeCCCc
Confidence 5678898887 7788888888888888 5 899999987654
No 374
>PRK08939 primosomal protein DnaI; Reviewed
Probab=46.67 E-value=39 Score=26.07 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=33.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
.+.+.-.+|.|=..=+..+|.+|.++|..|+|+..+.....+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 477887888888888899999999999999998876544333
No 375
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=46.36 E-value=37 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.016 Sum_probs=18.7
Q ss_pred CCccEEEecCCCccHHHH--HHHhCCccEEEcc
Q 040291 106 EKLDCFIADGYMAWSMEV--AKKMNVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~--A~~lgiP~i~~~~ 136 (160)
.+||+||.+.-......+ +..+++|.+.+.+
T Consensus 103 ~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 103 EKPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 689999987533332222 3345689875543
No 376
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=46.29 E-value=83 Score=21.52 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=35.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIM 47 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (160)
+++.-.|+.|=-.-.++++.+.++.|..|.+++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 466778899999999999999999999999999987765543
No 377
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=45.53 E-value=65 Score=20.63 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=29.3
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 9 LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
+.....|.-.-+.+.++.+.++|..|..+|.....+
T Consensus 52 i~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 334667888889999999999999999998876543
No 378
>PRK11524 putative methyltransferase; Provisional
Probab=45.49 E-value=48 Score=25.07 Aligned_cols=41 Identities=15% Similarity=-0.140 Sum_probs=30.7
Q ss_pred CccEEEecCCCccH--HHHHHHhCCccEEEccchHHHHHHHHc
Q 040291 107 KLDCFIADGYMAWS--MEVAKKMNVRGALFWPSSAASVALLFH 147 (160)
Q Consensus 107 ~~d~vI~D~~~~~~--~~~A~~lgiP~i~~~~~~~~~~~~~~~ 147 (160)
.+.=+|.|+|+..+ ..+|+++|--+|.+-...-+.-...-.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 45567899999654 678999999999998877665444333
No 379
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.47 E-value=90 Score=20.79 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
+.+|++....+-+|-.=--=++..|...|++|.-.......+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e 43 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPE 43 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHH
Confidence 678999999999999998888889999999999877654433
No 380
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=45.41 E-value=40 Score=27.43 Aligned_cols=27 Identities=22% Similarity=0.020 Sum_probs=21.6
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+||++|.. +....+|.++|||++.+.
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 479999975 446788999999998764
No 381
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=45.38 E-value=42 Score=22.22 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+..+-+.|..|.+-+.|.-++.+.|.+.-.++.++++...
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 4467889999999999999999999999999999998754
No 382
>PRK10749 lysophospholipase L2; Provisional
Probab=45.38 E-value=58 Score=24.97 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=27.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
++++-.+..+|..-+..+++.|+++|++|..+--
T Consensus 56 ~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~ 89 (330)
T PRK10749 56 VVVICPGRIESYVKYAELAYDLFHLGYDVLIIDH 89 (330)
T ss_pred EEEEECCccchHHHHHHHHHHHHHCCCeEEEEcC
Confidence 4555567789999999999999999999977543
No 383
>PRK03094 hypothetical protein; Provisional
Probab=45.29 E-value=24 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 040291 20 LLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+..+.++|.++|++|.=+.+.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 456889999999999876553
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=45.26 E-value=71 Score=23.72 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=36.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHh
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIME 48 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (160)
+++..-||.|=..-.++++.+-+.+|..|.|++.+.....+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 5666789999999999999999999999999999887655543
No 385
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=45.25 E-value=49 Score=21.15 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCC-EEEEE
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGF-RVTFV 37 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~ 37 (160)
++.++.++.....|.....++++.+.+++. ++.++
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 345555555556666666666666666655 55443
No 386
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.20 E-value=30 Score=26.81 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
..+|+|+-.+..| +.+|.+|+++|++||++--
T Consensus 3 ~~dv~IIGgGi~G-----~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 3 RYDVIVIGLGSMG-----SAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred cccEEEECCCHHH-----HHHHHHHHHCCCeEEEEec
Confidence 4456666655555 5678999999999999854
No 387
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=45.18 E-value=60 Score=22.59 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+.++-+-..|=..-+-++.++|.+||++|..+-....
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4566677788889999999999999999999866543
No 388
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=45.15 E-value=13 Score=22.08 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEe
Q 040291 18 IPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~~ 38 (160)
.---+|...|.++|++||=.|
T Consensus 20 ~sQ~eL~~~L~~~Gi~vTQaT 40 (70)
T PF01316_consen 20 SSQEELVELLEEEGIEVTQAT 40 (70)
T ss_dssp -SHHHHHHHHHHTT-T--HHH
T ss_pred CCHHHHHHHHHHcCCCcchhH
Confidence 344679999999999987533
No 389
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.94 E-value=69 Score=26.11 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=35.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
..|+++-..|.|=..-...||..|..+|.+|.+++.+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888899999999999999999999999999998764
No 390
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=44.78 E-value=20 Score=29.28 Aligned_cols=27 Identities=26% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
.+||++|... ....+|+++|||++.+.
T Consensus 394 ~~pDllig~~---~~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 394 YKPDIILTGI---REGELAKKLGVPYINIH 420 (457)
T ss_pred cCCCEEEecC---CcchhhhhcCCCEEEcc
Confidence 4799999764 45789999999998863
No 391
>PRK13054 lipid kinase; Reviewed
Probab=44.39 E-value=82 Score=23.93 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|-+++++++-.|..|...-..++.+.|.++|+++++..+..
T Consensus 1 ~~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~ 41 (300)
T PRK13054 1 MTFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWE 41 (300)
T ss_pred CCCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecC
Confidence 44567777666776665667778888999999988876654
No 392
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=44.15 E-value=30 Score=27.20 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|+..+|+|+-.+-.| +.+|..|+++|++||++=-
T Consensus 1 ~~~~dv~IvGgG~aG-----l~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 1 MNKYDIAVVGGGMVG-----AATALGFAKQGRSVAVIEG 34 (384)
T ss_pred CCcccEEEECcCHHH-----HHHHHHHHhCCCcEEEEcC
Confidence 655567776644434 5677889999999999863
No 393
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=43.97 E-value=31 Score=27.85 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=24.1
Q ss_pred EEEcCCC---CCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 7 LVLPIPA---QGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 7 ~~~~~p~---~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+=|++. -||+.|++. .+.|.+.||++.++...
T Consensus 39 G~dPT~~sLHlGhlv~l~~-l~~lq~~G~~~~~ligd 74 (410)
T PRK13354 39 GFDPTAPSLHIGHLVPLMK-LKRFQDAGHRPVILIGG 74 (410)
T ss_pred cccCCCCCcchhhHHHHHH-HHHHHHcCCeEEEEEcc
Confidence 3445542 399999555 56889999999998844
No 394
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=43.78 E-value=22 Score=28.36 Aligned_cols=27 Identities=33% Similarity=0.563 Sum_probs=21.6
Q ss_pred CChHHHH---HHHHHHHhCCCEEEEEeCCC
Q 040291 15 GHVIPLL---EFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 15 GH~~P~l---~la~~L~~rGh~Vt~~~~~~ 41 (160)
||+.|++ -++|.+..+|++|.+++..+
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 8998776 58888889999999988654
No 395
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=43.76 E-value=27 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCCCh
Q 040291 21 LEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
..|..+|...||+||+++=....
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcc
Confidence 46788888999999999865443
No 396
>PRK09186 flagellin modification protein A; Provisional
Probab=43.69 E-value=66 Score=23.22 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|-+.+.++++..+ |. ==..+++.|+++|++|.++..
T Consensus 1 ~~~~k~vlItGas-~g--iG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 1 MLKGKTILITGAG-GL--IGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CCCCCEEEEECCC-ch--HHHHHHHHHHHCCCEEEEEec
Confidence 3344566666443 32 335679999999999988754
No 397
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=43.65 E-value=31 Score=25.99 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=25.3
Q ss_pred EEEcCC-C--CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 7 LVLPIP-A--QGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 7 ~~~~~p-~--~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.+-|++ . -||+.|++ ..+.|.+.||++.++..+.
T Consensus 6 G~~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 6 GFDPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred eeCCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 445554 2 39999976 6788888899999987663
No 398
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=43.61 E-value=68 Score=23.24 Aligned_cols=45 Identities=4% Similarity=0.027 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCC-CCCccEEEecCCCccHHHHHHHhCCccEEEcc
Q 040291 92 KLEELIEDINSRE-DEKLDCFIADGYMAWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 92 ~~~~ll~~l~~~~-~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 136 (160)
.++.+++.+++.. ....-+||+|--...+...|+++|||+..+..
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4666776654421 12456788886545567899999999987644
No 399
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=43.59 E-value=33 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 16 HVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
++..|..++.+|.++|++|++..-+.
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 46789999999999999999987766
No 400
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=43.55 E-value=43 Score=26.87 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
..||++.-.++-. ......+++.|.++|++|.++-+....+.
T Consensus 4 ~k~ill~v~gsia-ayk~~~l~r~L~~~ga~v~vvmt~~a~~f 45 (392)
T COG0452 4 GKRILLGVTGSIA-AYKSVELVRLLRRSGAEVRVVMTESARKF 45 (392)
T ss_pred CceEEEEecCchh-hhhHHHHHHHHhhCCCeeEEEcchhhhhh
Confidence 4467766655443 34458999999999999999998875443
No 401
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=43.51 E-value=80 Score=23.91 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-C-CEEEEEeCCCCh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQ-G-FRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~r-G-h~Vt~~~~~~~~ 43 (160)
.++++-..|.|=..-...||..++.+ | ++|.+++.+.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45667678889999999999999987 5 999999998764
No 402
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=43.38 E-value=75 Score=22.78 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=31.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+.+.-.|+.|-..-.++++.+.+.+|..|.|+.++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45667899999999999999999999999999998
No 403
>PRK13236 nitrogenase reductase; Reviewed
Probab=43.35 E-value=45 Score=25.41 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 11 IPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
=+|-|=..-...||.+|+++|.+|-++=-+
T Consensus 14 KGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 455577789999999999999999998443
No 404
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=43.34 E-value=44 Score=22.20 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
...+..++|.+.||+|+++|.....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 5666677778999999999988654
No 405
>PLN02775 Probable dihydrodipicolinate reductase
Probab=43.34 E-value=65 Score=24.71 Aligned_cols=32 Identities=13% Similarity=-0.066 Sum_probs=20.7
Q ss_pred CCccEEEecCCCccH----HHHHHHhCCccEEEccc
Q 040291 106 EKLDCFIADGYMAWS----MEVAKKMNVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~----~~~A~~lgiP~i~~~~~ 137 (160)
.++|.|+.|+..+.+ ...|.+.|+|.|+=.|.
T Consensus 78 ~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 78 EYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 367777777766554 34567777777765554
No 406
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=43.27 E-value=78 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+.++++ ++.|.+- ..++++|+++|++|.++...
T Consensus 15 ~k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 3555665 4445444 78899999999999987654
No 407
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=43.24 E-value=35 Score=24.82 Aligned_cols=40 Identities=13% Similarity=0.374 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEE-ecCCCccHHHHHHHhCCcc
Q 040291 89 MPGKLEELIEDINSREDEKLDCFI-ADGYMAWSMEVAKKMNVRG 131 (160)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~vI-~D~~~~~~~~~A~~lgiP~ 131 (160)
+.+.++++.+.|.+ ...++.+ +.-|-..+..+|.+||||.
T Consensus 89 lT~Gi~eLv~~L~~---~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 89 LTPGIRELVSRLHA---RGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred cCCCHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 34567888888876 4556554 5556677889999999998
No 408
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.22 E-value=55 Score=26.69 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCC--CChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 3 RPHVLVLPIPAQ--GHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 3 ~~~i~~~~~p~~--GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.++|++++.|+- |.-.- .||+|+..||.++++.+..
T Consensus 266 ~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk~ 303 (453)
T KOG2585|consen 266 WPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPKR 303 (453)
T ss_pred CceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeecC
Confidence 467999998874 44333 9999999999999988763
No 409
>PRK05802 hypothetical protein; Provisional
Probab=43.18 E-value=40 Score=26.09 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
+++++. ++. =+.|++.++++|.++|.+|+++......
T Consensus 174 ~~llIa-GGi-GIaPl~~l~~~l~~~~~~v~li~g~r~~ 210 (320)
T PRK05802 174 KSLVIA-RGI-GQAPGVPVIKKLYSNGNKIIVIIDKGPF 210 (320)
T ss_pred eEEEEE-eEE-eHHHHHHHHHHHHHcCCcEEEEEeCCCH
Confidence 556555 333 3899999999999999999988766544
No 410
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=43.07 E-value=51 Score=26.58 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.1
Q ss_pred CccEEEecCCCccHHHHHHHhCCccEEEc
Q 040291 107 KLDCFIADGYMAWSMEVAKKMNVRGALFW 135 (160)
Q Consensus 107 ~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 135 (160)
++|+||.+ ++...+|+++|+|++.+.
T Consensus 371 ~~dliig~---s~~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 371 KPPIIFGS---SWERDLAKELGGKILEVS 396 (427)
T ss_pred CCCEEEec---hHHHHHHHHcCCCeEEEe
Confidence 38999977 457789999999998654
No 411
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=42.92 E-value=8 Score=28.05 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=24.1
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEccchH
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFWPSSA 139 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~~~~~ 139 (160)
..||+|| .|+-. ..+..-|.++|||.|.+.-+..
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 3589766 77755 4466779999999999865543
No 412
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.76 E-value=77 Score=24.43 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCCcc--HHHHHHHhCCccEEEccc
Q 040291 92 KLEELIEDINSREDEKLDCFIADGYMAW--SMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~~ 137 (160)
.+.++.+.+++ .+..||++++.... +..++++.|++.+.+.+.
T Consensus 240 ~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl 284 (311)
T PRK09545 240 RLHEIRTQLVE---QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPL 284 (311)
T ss_pred HHHHHHHHHHH---cCCCEEEecCCCChHHHHHHHHhcCCeEEEeccc
Confidence 34556666554 58999999998754 467999999998877544
No 413
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=42.73 E-value=61 Score=23.03 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEE
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTF 36 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~ 36 (160)
.+++-.-..|-..-+..+|+.|+++|+.|.+
T Consensus 16 ~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 16 AVVVIHDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEE-BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred EEEEEcCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 3444446677778888999999999976665
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=42.56 E-value=66 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=35.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCChhh
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYDHKR 45 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~~~~ 45 (160)
|+++-.+|.|=..-...||..|+.+ |.+|.++..+.+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 5677788999999999999999999 999999999877643
No 415
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=42.53 E-value=82 Score=22.38 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=21.2
Q ss_pred CCccEEEecCCCccH--HHHHHHhCCccEEEccc
Q 040291 106 EKLDCFIADGYMAWS--MEVAKKMNVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~--~~~A~~lgiP~i~~~~~ 137 (160)
.++|.||........ ...+.+.|||++.+...
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLVDRP 87 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEeccc
Confidence 468888866554433 34567778888887654
No 416
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.23 E-value=78 Score=20.19 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=27.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 11 IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
....|.-.-+++.++...++|..|..+|.....+
T Consensus 53 iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 53 ISQSGETADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred EeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3446677779999999999999999888875543
No 417
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=42.13 E-value=42 Score=21.18 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=26.6
Q ss_pred CCccEEEecCCCcc-------HHHHHHHhCCccEEEccchHHHHHHHHch
Q 040291 106 EKLDCFIADGYMAW-------SMEVAKKMNVRGALFWPSSAASVALLFHI 148 (160)
Q Consensus 106 ~~~d~vI~D~~~~~-------~~~~A~~lgiP~i~~~~~~~~~~~~~~~~ 148 (160)
...|++..|....+ ...+|+++|+++..=...+....+...|+
T Consensus 17 ~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hl 66 (111)
T PF13378_consen 17 GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHL 66 (111)
T ss_dssp TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHH
T ss_pred CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHH
Confidence 46799999964432 24688999999877654444444444443
No 418
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.11 E-value=30 Score=26.10 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|+-.+|.++-.+..|. .+|..|+++||+|+++...
T Consensus 2 ~~~~kI~vIGaG~mG~-----~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 2 MAIKKVGVIGAGQMGN-----GIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCCCEEEEECCcHHHH-----HHHHHHHHCCCeEEEEeCC
Confidence 4456788886665553 4788899999999998654
No 419
>PRK08265 short chain dehydrogenase; Provisional
Probab=42.06 E-value=73 Score=23.30 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
+.++++..+.| -=..++++|+++|++|+++.-
T Consensus 7 k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 56666644332 446789999999999988754
No 420
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=42.02 E-value=34 Score=24.31 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=27.3
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 7 LVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 7 ~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+++-.|+.|+...+.+|++.|..++..|..+-.+..
T Consensus 3 lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~ 38 (229)
T PF00975_consen 3 LFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGR 38 (229)
T ss_dssp EEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTS
T ss_pred EEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCC
Confidence 444558889999999999999988566666655543
No 421
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=42.02 E-value=1.3e+02 Score=21.77 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=30.6
Q ss_pred CeEE-EEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 4 PHVL-VLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~-~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
..+- ++.....|-..-+++-++....+|-+|.++++.-.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3443 44456678899999999999999999999888644
No 422
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=42.01 E-value=1e+02 Score=22.69 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=34.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~~~~~ 46 (160)
+++...|+.|-..-++.+|..++.+ |+.|.+++.+...+.+
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 4566689999999999999999998 6999999998776554
No 423
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=41.93 E-value=75 Score=23.20 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
.+.++++.++.| + =..++++|+++|++|.++.-
T Consensus 5 ~k~vlItGas~g-I--G~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 5 GEVVLVTGGASG-L--GRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred CcEEEEECCCCh-H--HHHHHHHHHHCCCEEEEEeC
Confidence 456666644433 2 26788999999999987643
No 424
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=41.81 E-value=75 Score=22.73 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=19.1
Q ss_pred CCccEEEec----CCCccHHHHHHHh-----CCccEEEccc
Q 040291 106 EKLDCFIAD----GYMAWSMEVAKKM-----NVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI~D----~~~~~~~~~A~~l-----giP~i~~~~~ 137 (160)
.+|||||.| .-...+..+.+++ +++.+++...
T Consensus 46 ~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 46 LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 478999999 2223344444433 4677777543
No 425
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=41.77 E-value=84 Score=22.35 Aligned_cols=39 Identities=15% Similarity=0.422 Sum_probs=29.6
Q ss_pred CeEEEEc--CCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCC
Q 040291 4 PHVLVLP--IPAQGHVIPLLEFSQCLAK-QGFRVTFVNTDYD 42 (160)
Q Consensus 4 ~~i~~~~--~p~~GH~~P~l~la~~L~~-rGh~Vt~~~~~~~ 42 (160)
.+++.+. -++.|=-.-...||..|++ +|.+|.++=.+..
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 4555444 4777888889999999996 6999998865543
No 426
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=41.74 E-value=1.2e+02 Score=21.30 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHH-HhcCCCCCccEEEecCCCcc---HHHHHHHhCC
Q 040291 58 EQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEELIED-INSREDEKLDCFIADGYMAW---SMEVAKKMNV 129 (160)
Q Consensus 58 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~d~vI~D~~~~~---~~~~A~~lgi 129 (160)
+.|-+.++.|+-. ....+.++.....+.+.+.+++++ +....+.++.|||.|..... +...+++|.-
T Consensus 4 pkIGIrp~iDGR~-----~gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~ 74 (171)
T PF07881_consen 4 PKIGIRPTIDGRR-----GGVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKR 74 (171)
T ss_dssp -EEEEEEB----T-----TTHHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHC
T ss_pred CeEEEEEeecCCc-----hhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHH
Confidence 4466666655422 124444444443444445555554 22222356799999997755 3456777753
No 427
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=41.65 E-value=52 Score=24.37 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=21.7
Q ss_pred CCccEEEe-cC-CCccHHHHHHHhCCccEEE
Q 040291 106 EKLDCFIA-DG-YMAWSMEVAKKMNVRGALF 134 (160)
Q Consensus 106 ~~~d~vI~-D~-~~~~~~~~A~~lgiP~i~~ 134 (160)
.++|+|+. +. -.+.+..+|..+|+|.+..
T Consensus 110 ~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 110 LRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred CCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 46899883 33 3355778999999999874
No 428
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=41.59 E-value=84 Score=22.84 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=25.2
Q ss_pred eEEEEcCC-CCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIP-AQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p-~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.|+|++=+ -.+...+.....++|.++|++|.++++.
T Consensus 152 ~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 152 TVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred EEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 35555544 4577777777777777777777777776
No 429
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=41.55 E-value=60 Score=26.07 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=28.5
Q ss_pred eEEEEc--CCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLP--IPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+|..+. =+|.|=..-...||..|+.+|++|-++=.+
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 444444 377889999999999999999999887444
No 430
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.48 E-value=48 Score=27.23 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
|...+++++-.+--| +.-|..|+++|++|+++=
T Consensus 1 ~~~~dvvVIGaG~~G-----L~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 1 MPMYDVVVIGAGLNG-----LAAAALLARAGLKVTVLE 33 (487)
T ss_pred CCCccEEEECCChhH-----HHHHHHHHhCCCEEEEEE
Confidence 555677777644444 566888999999999975
No 431
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=41.41 E-value=79 Score=22.60 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 12 PAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 12 p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
++.|.+ =..+++.|+++|++|+.+...
T Consensus 13 Gasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 13 GAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 445555 467899999999999887654
No 432
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.38 E-value=27 Score=28.07 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 19 PLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
....|.++|.++||+|+++...-.
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred hHHHHHHHHHhcCceeEEeeccch
Confidence 345788999999999999988754
No 433
>PRK14974 cell division protein FtsY; Provisional
Probab=41.29 E-value=73 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=34.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
-|+++-.+|.|=..-...||..|..+|++|.++..+.+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 466777999999999999999999999999998877553
No 434
>PRK10566 esterase; Provisional
Probab=41.28 E-value=62 Score=23.29 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=27.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
.+++..+..|.-..+..+++.|+++|+.|..+--.
T Consensus 29 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 63 (249)
T PRK10566 29 TVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAP 63 (249)
T ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCC
Confidence 55566667777777889999999999998876543
No 435
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=41.22 E-value=92 Score=20.27 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=26.9
Q ss_pred CeEEEEcCCCCCChHHHH---HHHHHHHhCCCEEEEEeC
Q 040291 4 PHVLVLPIPAQGHVIPLL---EFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l---~la~~L~~rGh~Vt~~~~ 39 (160)
+++++++....|-...++ .|.++-.++||++.+=+-
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~q 41 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQ 41 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 678888877777776665 566666778999997543
No 436
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=41.09 E-value=1.1e+02 Score=21.18 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|..+-|++.-.+|.|=-.-.-.|+++|..+|++|.++..+.
T Consensus 1 ~~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 41 (195)
T TIGR00041 1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG 41 (195)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 65556888889999999999999999999999998765543
No 437
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=41.07 E-value=38 Score=27.73 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=20.4
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEE
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGAL 133 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~ 133 (160)
.++|++|... ....+|+++|||.+-
T Consensus 396 ~~pDliig~s---~~~~~A~klgiP~vd 420 (461)
T TIGR01860 396 IKPDVIFTGP---RVGELVKKLHIPYVN 420 (461)
T ss_pred cCCCEEEeCC---cchhhHhhcCCCEEe
Confidence 4789999774 456799999999983
No 438
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=41.02 E-value=32 Score=26.12 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=27.1
Q ss_pred EEcCCC--CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 8 VLPIPA--QGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 8 ~~~~p~--~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+-|++. -||+.+.+.....|.+.|+++.++..+.
T Consensus 6 ~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 6 IQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred eCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 344443 3999999999999999999999987764
No 439
>PLN02939 transferase, transferring glycosyl groups
Probab=40.98 E-value=43 Score=30.20 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=29.0
Q ss_pred CCeEEEEc-----CCCCCCh-HHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 3 RPHVLVLP-----IPAQGHV-IPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 3 ~~~i~~~~-----~p~~GH~-~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
++||++++ +.-.|-+ .-.-.|.++|+++||+|.+++|.-
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46788765 2323444 566789999999999999999853
No 440
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=40.98 E-value=39 Score=27.37 Aligned_cols=35 Identities=11% Similarity=-0.035 Sum_probs=23.4
Q ss_pred CCccEEEecCCCccHHHHHHHhCCccEEE-ccchHH
Q 040291 106 EKLDCFIADGYMAWSMEVAKKMNVRGALF-WPSSAA 140 (160)
Q Consensus 106 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~-~~~~~~ 140 (160)
.+..+++.+.....+..+.+++|||++.+ .+.+..
T Consensus 235 A~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~G~~ 270 (432)
T TIGR01285 235 SCCTLAIGESMRRAASLLADRCGVPYIVFPSLMGLE 270 (432)
T ss_pred CcEEEEEChhHHHHHHHHHHHHCCCeEecCCCcChH
Confidence 35566665554444667889999999987 454443
No 441
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=40.97 E-value=66 Score=24.42 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=23.0
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEcc
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~~ 136 (160)
.++|+|+ .+.-. +.+..+|.++|+|.+..--
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK 159 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLNVPLVIVRK 159 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHCCCEEEEEE
Confidence 4789998 44422 5577899999999988643
No 442
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=40.92 E-value=1.3e+02 Score=25.17 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecC
Q 040291 18 IPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIP 66 (160)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (160)
.=..++++.|.+.|+++ ++|.+..+.+.. .|+.+..+.
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L~e---------~GI~v~~Vs 48 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLLAE---------AGVPVTEVS 48 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHHHH---------CCCeEEEee
Confidence 34678999999999998 467776666654 477766654
No 443
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=40.82 E-value=81 Score=25.28 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCccEEE-ecCCCcc--HHHHHHHhC--CccEEEcc
Q 040291 93 LEELIEDINSREDEKLDCFI-ADGYMAW--SMEVAKKMN--VRGALFWP 136 (160)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI-~D~~~~~--~~~~A~~lg--iP~i~~~~ 136 (160)
.+++++.+.+ .+||++| .|.--+- ...--++.| +|.|.+.+
T Consensus 74 ~~~~~~~i~~---~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~ 119 (381)
T COG0763 74 RRELVRYILA---NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS 119 (381)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC
Confidence 4556665554 6899888 7864322 233345556 88887644
No 444
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=40.76 E-value=38 Score=29.79 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (160)
|...|+.++-.++.| +-.||+.|.++|++|+..
T Consensus 2 ~~~~~i~viG~G~sG----~salA~~L~~~G~~V~~s 34 (809)
T PRK14573 2 MKSLFYHFIGIGGIG----MSALAHILLDRGYSVSGS 34 (809)
T ss_pred CCcceEEEEEecHHh----HHHHHHHHHHCCCeEEEE
Confidence 344578888888877 667799999999999974
No 445
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=40.70 E-value=54 Score=22.62 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=20.6
Q ss_pred CeEEEEcCC--CCCChHHHHHHHHHHHhCCCEEE
Q 040291 4 PHVLVLPIP--AQGHVIPLLEFSQCLAKQGFRVT 35 (160)
Q Consensus 4 ~~i~~~~~p--~~GH~~P~l~la~~L~~rGh~Vt 35 (160)
.+|.++... ..-+..-..+|++.|+++|+.|.
T Consensus 2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv 35 (159)
T TIGR00725 2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILI 35 (159)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEE
Confidence 356666544 33444556788899999998443
No 446
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=40.66 E-value=42 Score=27.48 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCC--CC-hHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 3 RPHVLVLPIPAQ--GH-VIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 3 ~~~i~~~~~p~~--GH-~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
..+|+++|.=+. .+ .+...+|++.|.+||.+|.|.+++
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHP 346 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHP 346 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 457888873332 22 378899999999999999998876
No 447
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=40.56 E-value=74 Score=22.43 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHh--CCCEEEEEeCCCChhh
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAK--QGFRVTFVNTDYDHKR 45 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~--rGh~Vt~~~~~~~~~~ 45 (160)
.+|+++..+-.+-+.+...+.++|.+ +|.+|.++-.-+....
T Consensus 77 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~ 120 (210)
T PF00590_consen 77 KDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQA 120 (210)
T ss_dssp SEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHH
T ss_pred CCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHH
Confidence 45777777777777888888888887 7888887766554433
No 448
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=40.54 E-value=64 Score=22.75 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=23.4
Q ss_pred eEEEEcCCCC----CChHHHHHHHHHHHhCCCEEEEEe
Q 040291 5 HVLVLPIPAQ----GHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 5 ~i~~~~~p~~----GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
+|.++..... ....-..+|++.|+++||.+..=.
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GG 39 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGG 39 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECC
Confidence 5677765443 344667788889999998876533
No 449
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=40.41 E-value=91 Score=25.26 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=31.8
Q ss_pred CeEEEEc-CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 4 PHVLVLP-IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 4 ~~i~~~~-~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+-++++| ..+.||-.=++.++.+++++|+++.++.+.+
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 4577777 6667888888999999999999999998765
No 450
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=40.32 E-value=65 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=28.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
|.++-..+.|=..-...|+++|.+||++|-++-
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 456667788999999999999999999999985
No 451
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=40.23 E-value=91 Score=19.34 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCChHH-HHHHHHHHHhCCCEEEEEeCC
Q 040291 2 NRPHVLVLPIPAQGHVIP-LLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P-~l~la~~L~~rGh~Vt~~~~~ 40 (160)
=+.+|++++..|.|--.- ...+=+.|.++|.++.+....
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~ 40 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR 40 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 045899999888876655 355666778899999887643
No 452
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=40.15 E-value=50 Score=25.95 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=27.6
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 9 LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
++.+|.|=.--.+.|+++|.+||..+-+++=
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence 5678899999999999999999999999764
No 453
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=40.02 E-value=59 Score=20.70 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=18.9
Q ss_pred CCccEEEecCCC---ccHHHHHHHhCCccEE
Q 040291 106 EKLDCFIADGYM---AWSMEVAKKMNVRGAL 133 (160)
Q Consensus 106 ~~~d~vI~D~~~---~~~~~~A~~lgiP~i~ 133 (160)
.++|++|..+=. ....+..++.|||++.
T Consensus 61 ~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred cCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 689999988733 3346667777888753
No 454
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=40.00 E-value=76 Score=22.83 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+.++++ ++.|.+ =..+++.|+++|++|..+...
T Consensus 5 ~~vlIt-G~sg~i--G~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 5 KVALVT-GAASGI--GLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CEEEEE-CCCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 334444 334544 378999999999999887543
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=39.88 E-value=1.3e+02 Score=21.68 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhhH
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKRI 46 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (160)
+++.-.|+.|-..-..+++.+.+.+|..|.+++.+...+.+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 55667889999999999998888899999999998765544
No 456
>PRK08309 short chain dehydrogenase; Provisional
Probab=39.78 E-value=53 Score=23.02 Aligned_cols=34 Identities=15% Similarity=-0.095 Sum_probs=23.5
Q ss_pred CCccEEEecCCCcc---HHHHHHHhCCc-----cEEEccchH
Q 040291 106 EKLDCFIADGYMAW---SMEVAKKMNVR-----GALFWPSSA 139 (160)
Q Consensus 106 ~~~d~vI~D~~~~~---~~~~A~~lgiP-----~i~~~~~~~ 139 (160)
.++|.+|....... ...+|++.|+. .+.+..+.+
T Consensus 74 g~id~lv~~vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 74 GPFDLAVAWIHSSAKDALSVVCRELDGSSETYRLFHVLGSAA 115 (177)
T ss_pred CCCeEEEEeccccchhhHHHHHHHHccCCCCceEEEEeCCcC
Confidence 35788776655433 35688999998 777776655
No 457
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=39.75 E-value=86 Score=22.55 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+.++++++..+.| ==..+|++|+++|++|+++.....
T Consensus 4 ~~~~ilITGas~G---iG~aia~~l~~~G~~v~~~~~~~~ 40 (251)
T COG1028 4 SGKVALVTGASSG---IGRAIARALAREGARVVVAARRSE 40 (251)
T ss_pred CCCEEEEeCCCCH---HHHHHHHHHHHCCCeEEEEcCCCc
Confidence 4566777755553 346788999999999888776543
No 458
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=39.75 E-value=33 Score=27.50 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCccEEEecCCCccHHHHHHHhCCccEEE
Q 040291 95 ELIEDINSREDEKLDCFIADGYMAWSMEVAKKMNVRGALF 134 (160)
Q Consensus 95 ~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~ 134 (160)
++.+.+.+ .++|++|.. +....+|+++|||.+.+
T Consensus 349 e~~~~~~~---~~pdliig~---s~~~~~a~~lgip~~~~ 382 (415)
T cd01977 349 EFFEILEM---LKPDIILTG---PRVGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHHh---cCCCEEEec---CccchhhhhcCCCEEec
No 459
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=39.72 E-value=1.6e+02 Score=21.90 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhCC-CEEEEEeCCCCh--hhHHhhhccCCCCCCCeeeeecCC-CCCCCCCcccHHHHHHHHHHhccHH
Q 040291 17 VIPLLEFSQCLAKQG-FRVTFVNTDYDH--KRIMESLEGKNDLGEQIRLVSIPD-GMEPWEDRNDFGKLFEKVLQVMPGK 92 (160)
Q Consensus 17 ~~P~l~la~~L~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
..|...+.++|.+-| -+|.++++-... +.+.+.+ ...|+++..+.. +...+. . +.+.-.+.
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l-----~~~G~eV~~~~~~~~~~~~---~-------ia~i~p~~ 169 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYF-----AVRGFEIVNFTCLGLTDDR---E-------MARISPDC 169 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHH-----HhCCcEEeeeeccCCCCCc---e-------eeecCHHH
Confidence 356677777777776 456666653221 1111111 114566554421 111110 0 11112223
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCCccHH----HHHHHhCCccEEEc
Q 040291 93 LEELIEDINSREDEKLDCFIADGYMAWSM----EVAKKMNVRGALFW 135 (160)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~~~~~----~~A~~lgiP~i~~~ 135 (160)
+.+.++++.. ..+|.|+.-.....+. .+-+++|+|++...
T Consensus 170 i~~~~~~~~~---~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSN 213 (239)
T TIGR02990 170 IVEAALAAFD---PDADALFLSCTALRAATCAQRIEQAIGKPVVTSN 213 (239)
T ss_pred HHHHHHHhcC---CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHH
Confidence 3444444432 4689887665443333 35577899997653
No 460
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=39.71 E-value=1.4e+02 Score=23.49 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCccEEEe-cCCC--ccHHHHHHHhCCccEEEccchHHHHHHHHchhhHHhcC
Q 040291 106 EKLDCFIA-DGYM--AWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLIDDG 155 (160)
Q Consensus 106 ~~~d~vI~-D~~~--~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~ 155 (160)
...|++|. |... ..+..+++++|+|..-+...-..+......-..+.+.|
T Consensus 70 ~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ACSTf~~AL~lAa~lI~SG 122 (327)
T TIGR02845 70 DDVDFFLAGDLLNQIITANFVARDLGIPFLGLYGACSTSMETLALGAMLVDGG 122 (327)
T ss_pred HHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEeccCHHHHHHHHHHHHHHhCC
Confidence 35788874 4321 23567899999999777665444444443333444444
No 461
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.65 E-value=1e+02 Score=19.72 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=25.8
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 10 PIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
...-.|--.-+++.++...++|..|..+|....
T Consensus 49 ~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~ 81 (119)
T cd05017 49 AVSYSGNTEETLSAVEQAKERGAKIVAITSGGK 81 (119)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 345667777888899999999999988886543
No 462
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=39.64 E-value=45 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=27.3
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 9 LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
++.+|.|=.--...|++.|.++|++|.+++-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSR 73 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSR 73 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcC
Confidence 5678889888899999999999999998764
No 463
>PRK07208 hypothetical protein; Provisional
Probab=39.61 E-value=35 Score=27.61 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
|++.+|+|+-.+..| +.-|..|+++|++|+++=.
T Consensus 2 ~~~~~vvIiGaGisG-----L~aA~~L~~~g~~v~v~E~ 35 (479)
T PRK07208 2 TNKKSVVIIGAGPAG-----LTAAYELLKRGYPVTVLEA 35 (479)
T ss_pred CCCCcEEEECcCHHH-----HHHHHHHHHCCCcEEEEec
Confidence 566778887765434 6778889999999999854
No 464
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=39.54 E-value=66 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred eEEEE--cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 5 HVLVL--PIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 5 ~i~~~--~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
+|+++ .+|..||..-..++ .+|.++||+|++++-...
T Consensus 2 ~ia~~~~~~P~~setFi~~ei-~~l~~~G~~v~~~s~~~~ 40 (406)
T PRK15427 2 KVGFFLLKFPLSSETFVLNQI-TAFIDMGFEVEIVALQKG 40 (406)
T ss_pred eEEEEeccCCccchhhHHHHH-HHHHHcCceEEEEEccCC
Confidence 55544 48999998877554 677899999999986543
No 465
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=39.50 E-value=70 Score=22.84 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=23.2
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEccc
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~~~ 137 (160)
.++|+|+ .+.-- ..+..+|.++|+|.+...-.
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~ 82 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFARKK 82 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeC
Confidence 4789998 44322 44677999999999987543
No 466
>PRK07308 flavodoxin; Validated
Probab=39.45 E-value=78 Score=21.06 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCCCCCChHH-HHHHHHHHHhCCCEEEEEeCCC
Q 040291 1 MNRPHVLVLPIPAQGHVIP-LLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P-~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|++.+|+..+ ..||.-= ...+++.|.++|++|.+.-...
T Consensus 1 m~~~~IvY~S--~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~ 40 (146)
T PRK07308 1 MALAKIVYAS--MTGNTEEIADIVADKLRELGHDVDVDECTT 40 (146)
T ss_pred CceEEEEEEC--CCchHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 6655555433 6787754 4556778888999998865543
No 467
>PRK09213 pur operon repressor; Provisional
Probab=39.40 E-value=72 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCccEEE-ecCCC-ccHHHHHHHhCCccEEEcc
Q 040291 106 EKLDCFI-ADGYM-AWSMEVAKKMNVRGALFWP 136 (160)
Q Consensus 106 ~~~d~vI-~D~~~-~~~~~~A~~lgiP~i~~~~ 136 (160)
.++|+|+ .+.-. +.+..+|..+|+|.+..--
T Consensus 129 ~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 129 KKIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred cCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 4689988 44422 5577899999999988643
No 468
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=39.29 E-value=31 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 12 PAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 12 p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
|-.|.-.=+..++++|+++ |+||+++-..
T Consensus 12 ~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 12 PNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 3458889999999999776 8999998754
No 469
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=39.28 E-value=64 Score=26.44 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.++|+++-.+..| +..++.|.++|++|++.=....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 4689999988888 8999999999999999754443
No 470
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=39.24 E-value=44 Score=25.45 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCh-HHHHHHHHHHHhCCCEEEEEe
Q 040291 6 VLVLPIPAQGHV-IPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 6 i~~~~~p~~GH~-~P~l~la~~L~~rGh~Vt~~~ 38 (160)
+++.++|+.=|+ .|.-.++..|.+.|.++.++.
T Consensus 73 ~vVamSpgrrHlpkpvCdIt~~LR~~G~~tn~l~ 106 (302)
T TIGR03274 73 AVVSPSLARHHLPHAACDIAEYLRRYGAKTNMIG 106 (302)
T ss_pred EEEecCcccccCCCcHHHHHHHHHhcCCccceEE
Confidence 456679999999 899999999999998877754
No 471
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=39.23 E-value=45 Score=26.40 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=13.8
Q ss_pred HHHHHHhCCccEEEcc
Q 040291 121 MEVAKKMNVRGALFWP 136 (160)
Q Consensus 121 ~~~A~~lgiP~i~~~~ 136 (160)
+.+|+++|||+++..+
T Consensus 265 A~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 265 AVLAKEHGIPFFTVAP 280 (356)
T ss_pred HHHHHHhCCCEEEEcc
Confidence 5688999999999875
No 472
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=39.23 E-value=35 Score=27.43 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 040291 21 LEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~ 40 (160)
..+|++|+++|++|+++...
T Consensus 218 ~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 218 YALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHCCCEEEEeCCC
Confidence 57899999999999998654
No 473
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.12 E-value=78 Score=23.24 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
.++++++..+.|. --=..+|++|+++|++|.+..
T Consensus 8 ~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 8 GKKGLITGIANNM-SISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEe
Confidence 4678888776521 023578899999999998764
No 474
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=39.05 E-value=44 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
+++++ +-|++ .++++.|.++|.+|.++...
T Consensus 103 ivLvS--gD~Df---~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 103 IVLVS--GDSDF---VPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred EEEEE--CCccH---HHHHHHHHHcCCEEEEEccC
Confidence 44444 34554 45566777779999999887
No 475
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.04 E-value=65 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=22.8
Q ss_pred CeEEEEcCCCC-CChHHHHHHHHHHHhCCCEEEEEe
Q 040291 4 PHVLVLPIPAQ-GHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 4 ~~i~~~~~p~~-GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
.++++++..+. +-+ =..++++|+++|++|.+..
T Consensus 7 ~k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 7 GKKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CCEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEec
Confidence 45666765541 222 2789999999999998764
No 476
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=38.94 E-value=63 Score=23.98 Aligned_cols=36 Identities=25% Similarity=0.148 Sum_probs=30.9
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 040291 7 LVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYD 42 (160)
Q Consensus 7 ~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~ 42 (160)
.+..-+|.|-......+|..++++|.+|-++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 344478889999999999999999999999988764
No 477
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=38.83 E-value=41 Score=23.01 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
++|.++-.+..| ..+++.|.++||+|+++..
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 456666555444 5789999999999998763
No 478
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=38.73 E-value=1e+02 Score=24.22 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDH 43 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~ 43 (160)
.|.+.-.||.|=..-.-.|++.|.++|++|.++..+...
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 477888999999999999999999999999999887644
No 479
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=38.68 E-value=51 Score=25.86 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=26.9
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 040291 9 LPIPAQGHVIPLLEFSQCLAKQGFRVTFVNT 39 (160)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~ 39 (160)
++.+|.|=.--.+-|++.|.++|+++.+++-
T Consensus 64 itvGGTGKTP~v~~La~~l~~~G~~~~IlSR 94 (338)
T PRK01906 64 VTVGGTGKTPTVIALVDALRAAGFTPGVVSR 94 (338)
T ss_pred ccCCCCChHHHHHHHHHHHHHcCCceEEEec
Confidence 4678888888889999999999999998764
No 480
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=38.68 E-value=45 Score=25.50 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
++||+++-.++-|=+ +|..|++.|++||++.-.
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 468888888887754 566788999999998874
No 481
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=38.66 E-value=67 Score=23.81 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=30.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 040291 11 IPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHKR 45 (160)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (160)
=+|.|=..-.+.||.+|++||-.|+++=.+.+.+.
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 46779999999999999999999999988877653
No 482
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=38.63 E-value=41 Score=23.78 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+|.++ |.||+- +.+|..|++.||+|+.+=...
T Consensus 2 ~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 55555 555553 678889999999999876653
No 483
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.49 E-value=18 Score=21.64 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCEEEEE
Q 040291 18 IPLLEFSQCLAKQGFRVTFV 37 (160)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~ 37 (160)
.-++.|..++.++|.+|+|.
T Consensus 32 iR~M~L~~~wR~~G~~i~F~ 51 (74)
T COG3433 32 IRMMALLERWRKRGADIDFA 51 (74)
T ss_pred HHHHHHHHHHHHcCCcccHH
Confidence 45788999999999999984
No 484
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=38.42 E-value=40 Score=29.62 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=27.4
Q ss_pred CCccEEEecCCCcc--HHHHHHHhCCccEEEccch
Q 040291 106 EKLDCFIADGYMAW--SMEVAKKMNVRGALFWPSS 138 (160)
Q Consensus 106 ~~~d~vI~D~~~~~--~~~~A~~lgiP~i~~~~~~ 138 (160)
.-+|++|+|.-|.. ...+|+++|.+.|.+.+-.
T Consensus 301 GavD~~VvD~QCi~p~L~eiA~~ygt~lItTs~k~ 335 (781)
T PRK00941 301 GIPDVIVVDEQCVRTDILEEAKKLGIPVIATNDKI 335 (781)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEecccc
Confidence 46899999997744 5789999999999987643
No 485
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=38.40 E-value=74 Score=21.08 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=25.7
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 10 PIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
+.++.|=..-...+|+.|+++|++|-++-......
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~ 42 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSP 42 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 36777888899999999999999977776655443
No 486
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=38.37 E-value=68 Score=20.45 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHH
Q 040291 16 HVIPLLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEE 95 (160)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
+-.=++++++.|.+.|+++ +.|+...+.+.. .|+....+... +++ ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~---------~Gi~~~~v~~~-~~~----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLAD---------AGIPVRAVSKR-HED----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHH---------cCCceEEEEec-CCC----------------CCcHHHH
Confidence 4456789999999999988 466666555543 36665544211 110 1122333
Q ss_pred HHHHHhcCCCCCccEEEe--cCCC-----ccH---HHHHHHhCCccEEE
Q 040291 96 LIEDINSREDEKLDCFIA--DGYM-----AWS---MEVAKKMNVRGALF 134 (160)
Q Consensus 96 ll~~l~~~~~~~~d~vI~--D~~~-----~~~---~~~A~~lgiP~i~~ 134 (160)
++++ . .++|+||. |... ..+ .-.|-++|||+++-
T Consensus 62 ~i~~---~--g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 62 AIAE---K--GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHhC---C--CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 3321 0 37888885 4222 112 45789999999874
No 487
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=38.30 E-value=1e+02 Score=22.70 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=34.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCChhhH
Q 040291 5 HVLVLPIPAQGHVIPLLEFSQCLAKQ-GFRVTFVNTDYDHKRI 46 (160)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~~~~~~~~~~ 46 (160)
-+++...|+.|=..-..+++..++.. |+.|.+++.+.....+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 35566678999999999999999877 9999999998765444
No 488
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=38.22 E-value=42 Score=20.72 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChhhHHhhhccCCCCCCCeeeeecCCCCCCCCCcccHHHHHHHHHHhccHHHHHHHHH
Q 040291 20 LLEFSQCLAKQGFRVTFVNTDYDHKRIMESLEGKNDLGEQIRLVSIPDGMEPWEDRNDFGKLFEKVLQVMPGKLEELIED 99 (160)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (160)
++++|++|.+.|+++ +.|....+.+.. .|+....+.......+ ..+-.. .+.+++++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~---------~Gi~~~~v~~~~~~~~-~~~g~~-----------~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKE---------HGIEVTEVVNKIGEGE-SPDGRV-----------QIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHH---------TT--EEECCEEHSTG--GGTHCH-----------HHHHHHHT
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHH---------cCCCceeeeeecccCc-cCCchh-----------HHHHHHHc
Confidence 578999999999665 577766666654 4677444321110100 000000 23334443
Q ss_pred HhcCCCCCccEEEecCCCcc------H---HHHHHHhCCccEE
Q 040291 100 INSREDEKLDCFIADGYMAW------S---MEVAKKMNVRGAL 133 (160)
Q Consensus 100 l~~~~~~~~d~vI~D~~~~~------~---~~~A~~lgiP~i~ 133 (160)
.++|+||.-+--.. + ..+|.+++||.++
T Consensus 59 ------~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 59 ------GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp ------TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred ------CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 68999886543211 1 4578888998763
No 489
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.19 E-value=1e+02 Score=22.93 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCCccH--H---HHHHHhCCccEEE
Q 040291 93 LEELIEDINSREDEKLDCFIADGYMAWS--M---EVAKKMNVRGALF 134 (160)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~~~~--~---~~A~~lgiP~i~~ 134 (160)
+.++.+.+++ .+..||+++.....- . .+|++.|+|.+.+
T Consensus 195 l~~l~~~ik~---~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 195 IAAFQNAIKN---RQIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred HHHHHHHHHh---CCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 4555555554 578999999977542 2 4589999999876
No 490
>PRK08181 transposase; Validated
Probab=38.12 E-value=81 Score=23.85 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 4 PHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
.+++++-.+|.|=..=...++.++.++|+.|.|++...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD 144 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence 34666666666666666666777777777776665543
No 491
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.04 E-value=1.2e+02 Score=24.66 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=33.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 040291 6 VLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTDYDHK 44 (160)
Q Consensus 6 i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (160)
++++-..|.|=..-...||..+..+|++|.+++.+.+..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 456666788999999999999999999999999987743
No 492
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=37.99 E-value=67 Score=23.27 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCChHH-----HHHHHHHHHhCC
Q 040291 3 RPHVLVLPIPAQGHVIP-----LLEFSQCLAKQG 31 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P-----~l~la~~L~~rG 31 (160)
...++++...+.|.... ..+|+++|++||
T Consensus 14 ~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g 47 (205)
T COG1611 14 IRQIVVICGSARGIEPEEYYELARELGRELAKRG 47 (205)
T ss_pred cceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 45688888888655544 567777888899
No 493
>PRK07577 short chain dehydrogenase; Provisional
Probab=37.97 E-value=1.1e+02 Score=21.68 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|..++++++ ++.|-+ =..+++.|+++|++|+.+.-.
T Consensus 1 ~~~k~vlIt--G~s~~i--G~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 1 MSSRTVLVT--GATKGI--GLALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CCCCEEEEE--CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 444455443 444433 246789999999999887553
No 494
>PRK12404 stage V sporulation protein AD; Provisional
Probab=37.90 E-value=1.4e+02 Score=23.42 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=23.2
Q ss_pred CCccEEEe-cCC--CccHHHHHHHhCCccEEEccchHH
Q 040291 106 EKLDCFIA-DGY--MAWSMEVAKKMNVRGALFWPSSAA 140 (160)
Q Consensus 106 ~~~d~vI~-D~~--~~~~~~~A~~lgiP~i~~~~~~~~ 140 (160)
...|.++. |.. ...+..+++++|||.+-+...-+.
T Consensus 74 ~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gACST 111 (334)
T PRK12404 74 EDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGACST 111 (334)
T ss_pred HHCCEEEEEecCCCcCcHHHHHHHhCCCccceeecCHH
Confidence 35888885 544 233457899999999776554333
No 495
>PRK08304 stage V sporulation protein AD; Validated
Probab=37.90 E-value=1.3e+02 Score=23.64 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCccEEEe-cCC--CccHHHHHHHhCCccEEEccchHHHHHHHHchhhHHhcC
Q 040291 106 EKLDCFIA-DGY--MAWSMEVAKKMNVRGALFWPSSAASVALLFHIPKLIDDG 155 (160)
Q Consensus 106 ~~~d~vI~-D~~--~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~ 155 (160)
...|++|+ |.. ...+..+++++|||..-+....+.+......--.+.+.|
T Consensus 76 ~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~gACST~~~AL~lAa~lI~SG 128 (337)
T PRK08304 76 SDIDYLLAGDLLNQIISANFAARELGIPFLGLYGACSTMMESLALGSMLIDGG 128 (337)
T ss_pred HHCCEEEEECCCCCcchHHHHHHHhCCcEEEEeccCHHHHHHHHHHHHHHhcC
Confidence 35888874 433 123567899999998887765554444333333334443
No 496
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=37.83 E-value=90 Score=25.86 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCCcc----HHHHHHHhCCccEEEc
Q 040291 92 KLEELIEDINSREDEKLDCFIADGYMAW----SMEVAKKMNVRGALFW 135 (160)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~----~~~~A~~lgiP~i~~~ 135 (160)
.+.++.+.+++ .+..||+++....- +..+|++.|+|.+.+.
T Consensus 408 ~L~~Li~~IK~---~~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l~ 452 (479)
T TIGR03772 408 DRRRLTRTIEN---LKVPAVFLEPNLAARSTTLNEIADELGVRVCAIY 452 (479)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCCCchHHHHHHHHHcCCcEEeee
Confidence 35566666655 68999999998742 4679999999987764
No 497
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=37.75 E-value=53 Score=21.55 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCCccEEEecCCC-----ccHHHHHHHhCCccEEEccc
Q 040291 95 ELIEDINSREDEKLDCFIADGYM-----AWSMEVAKKMNVRGALFWPS 137 (160)
Q Consensus 95 ~ll~~l~~~~~~~~d~vI~D~~~-----~~~~~~A~~lgiP~i~~~~~ 137 (160)
++.+.|.++ .+|-+++-.... .....+|+++|+|++.....
T Consensus 3 ~~~~~L~~A--~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 3 EAADLLSSA--KRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHH---SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHhC--CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 344444442 466555433222 11357999999999886543
No 498
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.75 E-value=55 Score=24.37 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 040291 13 AQGHVIPLLEFSQCLAKQGFRVTFVNTDY 41 (160)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~~~~~ 41 (160)
+.|-+- ..|+++|.++||+|..+....
T Consensus 8 ~tGfiG--~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 8 GAGFIG--SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred CcccHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 345444 889999999999999988644
No 499
>PRK12747 short chain dehydrogenase; Provisional
Probab=37.69 E-value=92 Score=22.48 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 040291 3 RPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVN 38 (160)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~ 38 (160)
+.+.++++..+.| -=..++++|+++|++|.+..
T Consensus 3 ~~k~~lItGas~g---IG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 3 KGKVALVTGASRG---IGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CCCEEEEeCCCCh---HHHHHHHHHHHCCCeEEEEc
Confidence 3456666654443 35678999999999998764
No 500
>PRK06914 short chain dehydrogenase; Provisional
Probab=37.57 E-value=1.1e+02 Score=22.43 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 040291 1 MNRPHVLVLPIPAQGHVIPLLEFSQCLAKQGFRVTFVNTD 40 (160)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~~~~ 40 (160)
|+.. .++++ ++.|-+ =..+++.|+++|++|+.+...
T Consensus 1 ~~~k-~~lIt-Gasg~i--G~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 1 MNKK-IAIVT-GASSGF--GLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCC-EEEEE-CCCchH--HHHHHHHHHhCCCEEEEEeCC
Confidence 5443 34444 344433 567889999999999887543
Done!