Your job contains 1 sequence.
>040295
ITYLSFRSHDIVSISLLIAIDEDRLSFVRVLIFGRQEMDSTDRASLEKRPGILIIGSSNV
GKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISD
QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLK
REESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDK
CLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKEVMMKKD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040295
(289 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156832 - symbol:AT5G65960 species:3702 "Arabi... 839 9.1e-84 1
MGI|MGI:1914189 - symbol:Aagab "alpha- and gamma-adaptin ... 103 1.8e-07 2
RGD|621601 - symbol:Aagab "alpha- and gamma-adaptin bindi... 94 2.4e-07 2
UNIPROTKB|F1SJJ1 - symbol:AAGAB "Uncharacterized protein"... 104 3.6e-07 2
UNIPROTKB|A5PKE7 - symbol:MGC152585 "Uncharacterized prot... 101 4.0e-07 2
UNIPROTKB|Q6PD74 - symbol:AAGAB "Alpha- and gamma-adaptin... 99 6.7e-07 2
UNIPROTKB|E1C7X1 - symbol:Gga.6982 "Uncharacterized prote... 95 1.2e-06 2
ZFIN|ZDB-GENE-040718-120 - symbol:aagab "alpha- and gamma... 94 3.6e-05 2
UNIPROTKB|Q5JT25 - symbol:RAB41 "Ras-related protein Rab-... 117 7.2e-05 1
DICTYBASE|DDB_G0282847 - symbol:rab5B "Rab GTPase" specie... 114 0.00015 1
ASPGD|ASPL0000015781 - symbol:srgH species:162425 "Emeric... 114 0.00016 1
WB|WBGene00004279 - symbol:rab-21 species:6239 "Caenorhab... 113 0.00017 1
DICTYBASE|DDB_G0277441 - symbol:rabJ "Rab GTPase" species... 115 0.00019 1
CGD|CAL0001741 - symbol:orf19.714 species:5476 "Candida a... 112 0.00027 1
UNIPROTKB|Q59U18 - symbol:YPT6 "Likely rab family GTP-bin... 112 0.00027 1
UNIPROTKB|F1N8I9 - symbol:RAB6A "Ras-related protein Rab-... 106 0.00058 1
UNIPROTKB|F5GZB1 - symbol:RAB6A "Ras-related protein Rab-... 99 0.00077 1
DICTYBASE|DDB_G0291269 - symbol:spg1 "small GTPase" speci... 107 0.00083 1
DICTYBASE|DDB_G0271736 - symbol:rabC "Rab GTPase" species... 106 0.00098 1
>TAIR|locus:2156832 [details] [associations]
symbol:AT5G65960 species:3702 "Arabidopsis thaliana"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0007264
"small GTPase mediated signal transduction" evidence=IEA]
InterPro:IPR013684 Pfam:PF08477 GO:GO:0005525 EMBL:CP002688
GO:GO:0007264 InterPro:IPR019341 Pfam:PF10199 GO:GO:0005622
UniGene:At.9206 EMBL:AY065381 EMBL:AY117200 IPI:IPI00524161
RefSeq:NP_569023.1 UniGene:At.28639 ProteinModelPortal:Q8VZ15
PRIDE:Q8VZ15 EnsemblPlants:AT5G65960.1 GeneID:836726
KEGG:ath:AT5G65960 TAIR:At5g65960 InParanoid:Q8VZ15 OMA:LMPDFQR
PhylomeDB:Q8VZ15 ProtClustDB:CLSN2917795 ArrayExpress:Q8VZ15
Genevestigator:Q8VZ15 Uniprot:Q8VZ15
Length = 393
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 160/246 (65%), Positives = 199/246 (80%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
+E RPG+L++GSS VGKRT+LSRLLSV FED+S+SSS+ V+GWTINTKYYTADVS+ ++
Sbjct: 1 MESRPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESSSQTEVHGWTINTKYYTADVSVCIS 60
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165
H+ +E+S+ +LP S L ALVMVF+L++LSTL AL+ WV D+ F+ILLCIGNKVD +
Sbjct: 61 HICDEYSLPNLPNSHPLVALVMVFDLSELSTLVALQDWVSHTDINSFDILLCIGNKVDRV 120
Query: 166 PGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE 223
P H H EYRRRLLK + S D D GISETEGSSLLG E+ S +IR +CLEWC+E
Sbjct: 121 PHHLAHDEYRRRLLKASDPSRDLYSDIDDFGISETEGSSLLGSEDASLDIRGACLEWCSE 180
Query: 224 HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKE 283
+ IE+IEACASN DFDKCLS+DGDSQGVERL+GALSAHMWPGM+LKSGD+I EP LP E
Sbjct: 181 NNIEFIEACASNPDFDKCLSVDGDSQGVERLFGALSAHMWPGMILKSGDRINEPVLPQGE 240
Query: 284 VMMKKD 289
+ +++
Sbjct: 241 ELSEEE 246
>MGI|MGI:1914189 [details] [associations]
symbol:Aagab "alpha- and gamma-adaptin binding protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015031 "protein transport" evidence=IEA]
MGI:MGI:1914189 GO:GO:0005829 GO:GO:0015031 CTD:79719
eggNOG:NOG271587 HOGENOM:HOG000115322 OMA:VMKNDRN OrthoDB:EOG4QFWDP
ChiTaRS:AAGAB InterPro:IPR019341 Pfam:PF10199 EMBL:AK159897
EMBL:AK009203 EMBL:CH466522 EMBL:BC027311 IPI:IPI00336915
RefSeq:NP_080133.1 UniGene:Mm.34338 ProteinModelPortal:Q8R2R3
STRING:Q8R2R3 PhosphoSite:Q8R2R3 PRIDE:Q8R2R3
Ensembl:ENSMUST00000041551 GeneID:66939 KEGG:mmu:66939
GeneTree:ENSGT00390000007218 HOVERGEN:HBG053397 InParanoid:Q3TW04
NextBio:323075 Bgee:Q8R2R3 CleanEx:MM_2310007F21RIK
Genevestigator:Q8R2R3 GermOnline:ENSMUSG00000037257 Uniprot:Q8R2R3
Length = 316
Score = 103 (41.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 25/91 (27%), Positives = 52/91 (57%)
Query: 75 EDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNL 131
EDA + SS + WTI+ KYY+A+++L + + +F + + I++ + A V+ F+
Sbjct: 30 EDAVVEATSSDAVRFYPWTIDNKYYSAEINLCV--VPSKFLVTA-EIAESVQAFVVYFDS 86
Query: 132 NDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
S LD++ W+P + E+++ + ++V
Sbjct: 87 TQKSGLDSVSSWLPLAEAWLAEVMILVCDRV 117
Score = 82 (33.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 214 RRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
R+ EWC +H E +E + + +S GV+R+ AL+A++W +V+KS
Sbjct: 124 RQQAQEWCIKHGFELVELNPEELPEED--DDFPESTGVKRIVQALNANVWSNVVMKS 178
>RGD|621601 [details] [associations]
symbol:Aagab "alpha- and gamma-adaptin binding protein"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] RGD:621601 GO:GO:0005829
GO:GO:0015031 CTD:79719 eggNOG:NOG271587 HOGENOM:HOG000115322
OMA:VMKNDRN OrthoDB:EOG4QFWDP InterPro:IPR019341 Pfam:PF10199
EMBL:AF178669 IPI:IPI00206882 RefSeq:NP_599225.1 UniGene:Rn.163023
MINT:MINT-1344470 STRING:Q9R0Z7 PRIDE:Q9R0Z7 GeneID:171435
KEGG:rno:171435 UCSC:RGD:621601 InParanoid:Q9R0Z7 NextBio:622324
Genevestigator:Q9R0Z7 GermOnline:ENSRNOG00000008424 Uniprot:Q9R0Z7
Length = 315
Score = 94 (38.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/91 (27%), Positives = 51/91 (56%)
Query: 75 EDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNL 131
EDA + SS + WTI+ KYY+A+V+L + + + + + I++ + A V+ F+
Sbjct: 30 EDAVVEATSSDAVRFYPWTIDNKYYSAEVNLCV--VPSKCRVTA-EIAEAVQAFVVYFDS 86
Query: 132 NDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
S LD++ W+P + E+++ + ++V
Sbjct: 87 TQKSGLDSVSSWLPLAETWLPEVMILVCDRV 117
Score = 91 (37.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 214 RRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
R+ EWC +H E +E C + + +S GV+R+ AL+A++W +V+K+
Sbjct: 124 RQQAQEWCIKHGFELVELCPEELPEED--DDFPESTGVKRIVQALNANVWSNVVMKN 178
>UNIPROTKB|F1SJJ1 [details] [associations]
symbol:AAGAB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] GO:GO:0005737
OMA:VMKNDRN InterPro:IPR019341 Pfam:PF10199
GeneTree:ENSGT00390000007218 EMBL:FP236622
Ensembl:ENSSSCT00000005463 Uniprot:F1SJJ1
Length = 314
Score = 104 (41.7 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 22/74 (29%), Positives = 45/74 (60%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F I + I++ + A V+ F+ S LD++ W+P +
Sbjct: 46 WTIDNKYYSADINLCV--VPNKFLITA-EIAESVQAFVVYFDSTQTSGLDSVSSWLPLAE 102
Query: 149 LQKFEILLCIGNKV 162
E+++ + ++V
Sbjct: 103 AWLPEVMILVCDRV 116
Score = 78 (32.5 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 214 RRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
R+ EWC +H E +E + + +S G++R+ AL+A++W +V+K+
Sbjct: 123 RQKAQEWCIKHGFELVELNPEELPEED--DDFPESTGIKRIVQALNANVWSNVVMKN 177
>UNIPROTKB|A5PKE7 [details] [associations]
symbol:MGC152585 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] GO:GO:0005737
CTD:79719 eggNOG:NOG271587 OMA:VMKNDRN OrthoDB:EOG4QFWDP
InterPro:IPR019341 Pfam:PF10199 GeneTree:ENSGT00390000007218
HOVERGEN:HBG053397 EMBL:DAAA02027904 EMBL:DAAA02027905
EMBL:DAAA02027906 EMBL:DAAA02027907 EMBL:DAAA02027908
EMBL:DAAA02027909 EMBL:DAAA02027910 EMBL:DAAA02027911
EMBL:DAAA02027912 EMBL:DAAA02027913 EMBL:DAAA02027914
EMBL:DAAA02027915 EMBL:BC142460 IPI:IPI00854495
RefSeq:NP_001092366.1 UniGene:Bt.105915 Ensembl:ENSBTAT00000055091
GeneID:507035 KEGG:bta:507035 InParanoid:A5PKE7 NextBio:20867871
Uniprot:A5PKE7
Length = 315
Score = 101 (40.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 --LQKFEILLC 157
L + IL+C
Sbjct: 104 SWLPEVMILVC 114
Score = 81 (33.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 214 RRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
R+ EWC +H E +E + + +S GV+R+ AL+A++W +V+K+
Sbjct: 124 RQKAQEWCIKHGFELVELSPEELPEED--DDFPESTGVKRIVQALNANVWSNVVMKN 178
>UNIPROTKB|Q6PD74 [details] [associations]
symbol:AAGAB "Alpha- and gamma-adaptin-binding protein p34"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] GO:GO:0005829 GO:GO:0005737 GO:GO:0015031
EMBL:AK021568 EMBL:AL136715 EMBL:CR533540 EMBL:BC001975
EMBL:BC047026 EMBL:BC058886 IPI:IPI00100193 RefSeq:NP_078942.3
UniGene:Hs.254642 ProteinModelPortal:Q6PD74 IntAct:Q6PD74
MINT:MINT-1373784 PhosphoSite:Q6PD74 DMDM:62286981 PaxDb:Q6PD74
PeptideAtlas:Q6PD74 PRIDE:Q6PD74 DNASU:79719
Ensembl:ENST00000261880 GeneID:79719 KEGG:hsa:79719 UCSC:uc002aqk.4
CTD:79719 GeneCards:GC15M067493 HGNC:HGNC:25662 HPA:HPA039371
HPA:HPA040174 MIM:148600 MIM:614888 neXtProt:NX_Q6PD74
PharmGKB:PA165478457 eggNOG:NOG271587 HOGENOM:HOG000115322
InParanoid:Q6PD74 OMA:VMKNDRN OrthoDB:EOG4QFWDP PhylomeDB:Q6PD74
ChiTaRS:AAGAB GenomeRNAi:79719 NextBio:69069 ArrayExpress:Q6PD74
Bgee:Q6PD74 Genevestigator:Q6PD74 GermOnline:ENSG00000103591
InterPro:IPR019341 Pfam:PF10199 Uniprot:Q6PD74
Length = 315
Score = 99 (39.9 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 21/74 (28%), Positives = 44/74 (59%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKV 162
E+++ + ++V
Sbjct: 104 AWLPEVMILVCDRV 117
Score = 81 (33.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 214 RRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
R+ EWC +H E +E + + +S GV+R+ AL+A++W +V+K+
Sbjct: 124 RQKAQEWCIKHGFELVELSPEELPEED--DDFPESTGVKRIVQALNANVWSNVVMKN 178
>UNIPROTKB|E1C7X1 [details] [associations]
symbol:Gga.6982 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] GO:GO:0005737
CTD:79719 OMA:VMKNDRN InterPro:IPR019341 Pfam:PF10199
GeneTree:ENSGT00390000007218 EMBL:AADN02038906 IPI:IPI00593288
RefSeq:NP_001258457.1 Ensembl:ENSGALT00000012808 GeneID:415553
KEGG:gga:415553 NextBio:20819136 Uniprot:E1C7X1
Length = 314
Score = 95 (38.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD+ L + ++ + I++ + A V+ F+ + S LD + W+P +
Sbjct: 47 WTIDNKYYSADIHLCVV---PNTALVTGAIAESVQAFVVYFDSSIKSGLDGVSEWLPLTE 103
Query: 149 LQKFEILLCIGNKV 162
E+++ + N+V
Sbjct: 104 EWLPEVMILVCNRV 117
Score = 83 (34.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 214 RRSCLEWCTEHRIEYIEACASNV-DFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
R+ EWC +H E +E + D D +S GV+R+ AL+A++W +V+K+
Sbjct: 124 RQKAQEWCIKHGFELVELNPEELPDEDDDFP---ESTGVKRIVQALNANVWSNVVMKN 178
>ZFIN|ZDB-GENE-040718-120 [details] [associations]
symbol:aagab "alpha- and gamma-adaptin binding
protein" species:7955 "Danio rerio" [GO:0005525 "GTP binding"
evidence=IEA] [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001806 Pfam:PF00071
ZFIN:ZDB-GENE-040718-120 GO:GO:0005525 GO:GO:0007264 CTD:79719
InterPro:IPR019341 Pfam:PF10199 HOVERGEN:HBG053397 EMBL:BC076147
IPI:IPI00639222 RefSeq:NP_001002423.1 UniGene:Dr.75893
ProteinModelPortal:Q6DH35 GeneID:436696 KEGG:dre:436696
InParanoid:Q6DH35 NextBio:20831139 ArrayExpress:Q6DH35
Uniprot:Q6DH35
Length = 321
Score = 94 (38.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 28/115 (24%), Positives = 57/115 (49%)
Query: 50 PGILIIG-SSNVGKRTILSRLLSVNFEDASDSSSELLV-NGWTINTKYYTADVSLWMAHL 107
P IL+ SN + ++ ++LS + E + WTIN KYYTA+VSL + +
Sbjct: 13 PCILVTSCDSNFKEEELIRQILSSESPPQPNRIEERVSWYPWTINNKYYTANVSLCV--V 70
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
F + + ++ + A ++ F+ +L+ + W+ ++ E+L+ + + V
Sbjct: 71 SSTFDMNA-EVARSMQAFIIYFDSKTKDSLNNVNSWLSVVEELAPEVLILVCDHV 124
Score = 70 (29.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 214 RRSCLEWCTEHRIEYIEACASNV-DFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
R+ +WC H E +E ++ D D +S GV+R AL+A++W + +K
Sbjct: 133 RQDAQQWCLAHAFELVELNPQDLPDEDDDFP---ESTGVKRTIQALNANVWSSVEMK 186
>UNIPROTKB|Q5JT25 [details] [associations]
symbol:RAB41 "Ras-related protein Rab-41" species:9606
"Homo sapiens" [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
InterPro:IPR001806 InterPro:IPR003579 InterPro:IPR005225
Pfam:PF00071 PRINTS:PR00449 SMART:SM00175 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0007264 GO:GO:0015031 PROSITE:PS51419
eggNOG:COG1100 EMBL:AL357752 HOVERGEN:HBG009351
HOGENOM:HOG000233968 EMBL:BC117239 IPI:IPI00232898 IPI:IPI00929731
RefSeq:NP_001027898.2 UniGene:Hs.276327 ProteinModelPortal:Q5JT25
SMR:Q5JT25 STRING:Q5JT25 PhosphoSite:Q5JT25 DMDM:229462781
PaxDb:Q5JT25 PRIDE:Q5JT25 DNASU:347517 Ensembl:ENST00000276066
Ensembl:ENST00000374473 GeneID:347517 KEGG:hsa:347517
UCSC:uc010nkv.3 CTD:347517 GeneCards:GC0XP069502 HGNC:HGNC:18293
HPA:HPA001510 neXtProt:NX_Q5JT25 PharmGKB:PA34140 InParanoid:Q5JT25
KO:K07896 OMA:FEESGNR GenomeRNAi:347517 NextBio:99173
ArrayExpress:Q5JT25 Bgee:Q5JT25 CleanEx:HS_RAB41
Genevestigator:Q5JT25 Uniprot:Q5JT25
Length = 222
Score = 117 (46.2 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 37/144 (25%), Positives = 71/144 (49%)
Query: 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN 92
FG + + T+ SL K +L +G +VGK +I+SR + +F A ++ + T+
Sbjct: 16 FGLEAAERTEYQSLCKSK-LLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMY 74
Query: 93 TKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151
+ + LW E F S+ I D T V+V+++ ++++ WV + ++
Sbjct: 75 LEDQIVQLQLWDTAGQERFHSLIPSYIRDS-TIAVVVYDITNINSFKETDKWVEHVRAER 133
Query: 152 FE--ILLCIGNKVDLLPGHPVHAE 173
+ +++ +GNK+DL V AE
Sbjct: 134 GDDVVIMLLGNKIDLDNKRQVTAE 157
>DICTYBASE|DDB_G0282847 [details] [associations]
symbol:rab5B "Rab GTPase" species:44689
"Dictyostelium discoideum" [GO:0015031 "protein transport"
evidence=IEA] [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001806 InterPro:IPR003579
InterPro:IPR005225 Pfam:PF00071 PRINTS:PR00449 SMART:SM00175
dictyBase:DDB_G0282847 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0007264 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0015031 PROSITE:PS51419 eggNOG:COG1100 KO:K07976 HSSP:P20339
RefSeq:XP_639358.1 ProteinModelPortal:Q54RX9 PRIDE:Q54RX9
EnsemblProtists:DDB0229394 GeneID:8623798 KEGG:ddi:DDB_G0282847
OMA:GQNINEL Uniprot:Q54RX9
Length = 214
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 46/149 (30%), Positives = 71/149 (47%)
Query: 40 STD-RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYY 96
STD R +K ++++G N GK I SRL+ F +DS+ + LV ++
Sbjct: 39 STDNRNKFDKGFKLVLLGEMNTGKTCISSRLVRNEF-GPTDSTIGAAFLVKSMVVDN--I 95
Query: 97 TADVSLWMAHLHEEFSIRSL-PISDQ-LTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ +W E + RSL P+ + A V+V+++ +T + LK WV +LQK
Sbjct: 96 NIKLEIWDTAGQERY--RSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVS--ELQKHAS 151
Query: 154 ---ILLCIGNKVDLLPGHPVHAEYRRRLL 179
IL GNKVDL P V + R +
Sbjct: 152 PNLILALAGNKVDL-PNREVQVDEVNRYI 179
>ASPGD|ASPL0000015781 [details] [associations]
symbol:srgH species:162425 "Emericella nidulans"
[GO:0005769 "early endosome" evidence=IDA] [GO:0006897
"endocytosis" evidence=IMP] [GO:0005525 "GTP binding" evidence=IDA]
[GO:0007264 "small GTPase mediated signal transduction"
evidence=IMP] [GO:0006623 "protein targeting to vacuole"
evidence=IMP] [GO:0044088 "regulation of vacuole organization"
evidence=IMP] [GO:0005770 "late endosome" evidence=IDA] [GO:0006913
"nucleocytoplasmic transport" evidence=IEA] [GO:0006184 "GTP
catabolic process" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IEA] [GO:0031338 "regulation of vesicle fusion"
evidence=IEA] [GO:0070314 "G1 to G0 transition" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001806 InterPro:IPR003579
InterPro:IPR005225 Pfam:PF00071 PRINTS:PR00449 SMART:SM00175
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0007264 GO:GO:0015031
EMBL:BN001302 eggNOG:COG1100 EMBL:AACD01000062 KO:K07976
HOGENOM:HOG000233968 OMA:PTSRTCC OrthoDB:EOG4S1XHJ
RefSeq:XP_661446.1 ProteinModelPortal:Q5B6I8 SMR:Q5B6I8
EnsemblFungi:CADANIAT00004864 GeneID:2873265 KEGG:ani:AN3842.2
Uniprot:Q5B6I8
Length = 218
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 35/137 (25%), Positives = 63/137 (45%)
Query: 43 RASLEKRPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT-K 94
RA+ RPG ++++G S VGK +++ R + F+D +S+ TI+ +
Sbjct: 4 RAAAGARPGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDE 63
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E + + V+V+++ S+LD K WV + Q E
Sbjct: 64 STTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANEN 123
Query: 154 -ILLCIGNKVDLLPGHP 169
++ GNK+DL+ +P
Sbjct: 124 IVIALAGNKLDLVTENP 140
>WB|WBGene00004279 [details] [associations]
symbol:rab-21 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0007264 "small GTPase
mediated signal transduction" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0006913 "nucleocytoplasmic transport"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR001806 InterPro:IPR003579
InterPro:IPR005225 Pfam:PF00071 PRINTS:PR00449 SMART:SM00175
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0009792 GO:GO:0007264
GO:GO:0015031 eggNOG:COG1100 EMBL:Z66499 HOGENOM:HOG000233968
HSSP:P20339 KO:K07890 GeneTree:ENSGT00640000091439 PIR:T24268
RefSeq:NP_495854.1 ProteinModelPortal:Q22045 SMR:Q22045
IntAct:Q22045 STRING:Q22045 PaxDb:Q22045 EnsemblMetazoa:T01B7.3.1
EnsemblMetazoa:T01B7.3.2 GeneID:187932 KEGG:cel:CELE_T01B7.3
UCSC:T01B7.3 CTD:187932 WormBase:T01B7.3 InParanoid:Q22045
OMA:GARYLET NextBio:937000 Uniprot:Q22045
Length = 207
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 33/141 (23%), Positives = 71/141 (50%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G VGK +++ R + F S+ + T+N + AD+ +W E++
Sbjct: 15 IVLLGEGCVGKSSLVLRFVENKFSCKHLSTIQASFQNKTVNVEDCQADLHIWDTAGQEKY 74
Query: 112 SIRSLPISDQ-LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL-PGHP 169
PI + +++VF++ D + + +K+WV EI C+GN ++L G+
Sbjct: 75 HALG-PIYYRGSNGVLLVFDITDRKSFEKVKNWV-------LEIKTCLGNTAEILIVGNK 126
Query: 170 VHAEYRRRLLKRE-ESSADPD 189
+ E R++ +++ E+ A+ +
Sbjct: 127 IDLEEERQVTRQDAEAYAESE 147
>DICTYBASE|DDB_G0277441 [details] [associations]
symbol:rabJ "Rab GTPase" species:44689 "Dictyostelium
discoideum" [GO:0015031 "protein transport" evidence=IEA]
[GO:0007264 "small GTPase mediated signal transduction"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016020 "membrane"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR001806
InterPro:IPR003579 InterPro:IPR005225 Pfam:PF00071 PRINTS:PR00449
SMART:SM00175 dictyBase:DDB_G0277441 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0005886 GO:GO:0007264 GO:GO:0015031
GenomeReviews:CM000151_GR EMBL:AAFI02000020 PROSITE:PS51419
eggNOG:COG1100 KO:K07976 HSSP:P20339 RefSeq:XP_642644.1
ProteinModelPortal:Q8MYF2 EnsemblProtists:DDB0229403 GeneID:8621060
KEGG:ddi:DDB_G0277441 OMA:KIKYLIW Uniprot:Q8MYF2
Length = 256
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 41/162 (25%), Positives = 75/162 (46%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVS 101
D S+ ++++GSS+VGK + R + F S+ TIN +
Sbjct: 2 DPLSISMESKVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYL 61
Query: 102 LWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCI 158
+W + + F S+ +L A ++VF++ T D +K WV + ++Q+ I++
Sbjct: 62 IWDSAGQDRFRSLATLYYRGACVA-ILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLC 120
Query: 159 GNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200
GNK+DL V +E + L +E +A + ++ E EG
Sbjct: 121 GNKIDLEQNRQVKSETAK--LYADEINAM--YVETSAKENEG 158
>CGD|CAL0001741 [details] [associations]
symbol:orf19.714 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0042147 "retrograde transport, endosome to Golgi"
evidence=IEA] InterPro:IPR001806 InterPro:IPR003579
InterPro:IPR005225 Pfam:PF00071 PRINTS:PR00449 SMART:SM00175
CGD:CAL0001741 GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0007264
GO:GO:0015031 eggNOG:COG1100 EMBL:AACQ01000135 KO:K07976
RefSeq:XP_713074.1 ProteinModelPortal:Q59U18 SMR:Q59U18
GeneID:3645263 KEGG:cal:CaO19.714 Uniprot:Q59U18
Length = 219
Score = 112 (44.5 bits), Expect = 0.00027, P = 0.00027
Identities = 36/132 (27%), Positives = 70/132 (53%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFED--ASDSSSELLVNGWTINTKYYT 97
S+D+++L K+ I+ +G +VGK ++++R + F++ A+ + L + + T
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSLITRFMYDTFDETYAATIGIDFLSKTMYLE-EGKT 60
Query: 98 ADVSLWMAHLHEEFSIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ LW E F RSL P I D A V+ +++ + + D L W+ + L++ +
Sbjct: 61 IRLQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFDNLDKWIKDVKLERGDD 117
Query: 154 -ILLCIGNKVDL 164
I++ +GNK DL
Sbjct: 118 VIIVLVGNKSDL 129
>UNIPROTKB|Q59U18 [details] [associations]
symbol:YPT6 "Likely rab family GTP-binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001806
InterPro:IPR003579 InterPro:IPR005225 Pfam:PF00071 PRINTS:PR00449
SMART:SM00175 CGD:CAL0001741 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0007264 GO:GO:0015031 eggNOG:COG1100 EMBL:AACQ01000135
KO:K07976 RefSeq:XP_713074.1 ProteinModelPortal:Q59U18 SMR:Q59U18
GeneID:3645263 KEGG:cal:CaO19.714 Uniprot:Q59U18
Length = 219
Score = 112 (44.5 bits), Expect = 0.00027, P = 0.00027
Identities = 36/132 (27%), Positives = 70/132 (53%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFED--ASDSSSELLVNGWTINTKYYT 97
S+D+++L K+ I+ +G +VGK ++++R + F++ A+ + L + + T
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSLITRFMYDTFDETYAATIGIDFLSKTMYLE-EGKT 60
Query: 98 ADVSLWMAHLHEEFSIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ LW E F RSL P I D A V+ +++ + + D L W+ + L++ +
Sbjct: 61 IRLQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFDNLDKWIKDVKLERGDD 117
Query: 154 -ILLCIGNKVDL 164
I++ +GNK DL
Sbjct: 118 VIIVLVGNKSDL 129
>UNIPROTKB|F1N8I9 [details] [associations]
symbol:RAB6A "Ras-related protein Rab-6A" species:9031
"Gallus gallus" [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
InterPro:IPR001806 InterPro:IPR003579 InterPro:IPR005225
Pfam:PF00071 PRINTS:PR00449 SMART:SM00175 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0007264 GO:GO:0015031
GeneTree:ENSGT00600000084341 IPI:IPI00571478 OMA:TTKWIED
EMBL:AADN02055116 EMBL:AADN02055117 EMBL:AADN02055118
EMBL:AADN02055119 EMBL:AADN02055120 Ensembl:ENSGALT00000031276
Uniprot:F1N8I9
Length = 175
Score = 106 (42.4 bits), Expect = 0.00058, P = 0.00058
Identities = 36/163 (22%), Positives = 74/163 (45%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL P I D T V+V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDS-TVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEP 209
V E R K ++G + + S+ L P
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQVSNALAASSP 175
>UNIPROTKB|F5GZB1 [details] [associations]
symbol:RAB6A "Ras-related protein Rab-6A" species:9606
"Homo sapiens" [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
InterPro:IPR001806 InterPro:IPR003579 InterPro:IPR005225
Pfam:PF00071 PRINTS:PR00449 SMART:SM00175 GO:GO:0005525
TIGRFAMs:TIGR00231 GO:GO:0007264 GO:GO:0015031 EMBL:AP002770
EMBL:AP002993 HGNC:HGNC:9786 ChiTaRS:RAB6A IPI:IPI01009243
ProteinModelPortal:F5GZB1 SMR:F5GZB1 Ensembl:ENST00000539750
ArrayExpress:F5GZB1 Bgee:F5GZB1 Uniprot:F5GZB1
Length = 142
Score = 99 (39.9 bits), Expect = 0.00077, P = 0.00077
Identities = 30/127 (23%), Positives = 63/127 (49%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 75
Query: 112 SIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL P I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSAAAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAE 173
V E
Sbjct: 133 KRQVSIE 139
>DICTYBASE|DDB_G0291269 [details] [associations]
symbol:spg1 "small GTPase" species:44689
"Dictyostelium discoideum" [GO:0005813 "centrosome" evidence=IDA]
[GO:0007264 "small GTPase mediated signal transduction"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0007096
"regulation of exit from mitosis" evidence=ISS] [GO:0006184 "GTP
catabolic process" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001806
InterPro:IPR005225 Pfam:PF00071 PRINTS:PR00449
dictyBase:DDB_G0291269 GO:GO:0005525 TIGRFAMs:TIGR00231
GO:GO:0005813 GO:GO:0007264 EMBL:AAFI02000177
GenomeReviews:CM000155_GR GO:GO:0003924 GO:GO:0007096
eggNOG:COG1100 KO:K07976 OMA:DSQIGKT InterPro:IPR017231
PIRSF:PIRSF037527 RefSeq:XP_635107.1 ProteinModelPortal:Q54EY3
EnsemblProtists:DDB0230030 GeneID:8628054 KEGG:ddi:DDB_G0291269
InParanoid:Q54EY3 ProtClustDB:CLSZ2429534 Uniprot:Q54EY3
Length = 203
Score = 107 (42.7 bits), Expect = 0.00083, P = 0.00083
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + F++ D L VN TI+ + S+W EF
Sbjct: 23 MVGDSQIGKTSLMVKYVEGTFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF 80
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W K I IG K D+ P
Sbjct: 81 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDVFATKP 139
Query: 170 VHAEYRRRLLKREESSA--DP-DFCQSGIS 196
+ + R+ +SA P FC + S
Sbjct: 140 IEEQEEITKQARKFASAMKSPLIFCSTSHS 169
>DICTYBASE|DDB_G0271736 [details] [associations]
symbol:rabC "Rab GTPase" species:44689 "Dictyostelium
discoideum" [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0015031 "protein transport" evidence=IEA] [GO:0007264 "small
GTPase mediated signal transduction" evidence=IEA] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0016020 "membrane" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001806 InterPro:IPR003579 InterPro:IPR005225
Pfam:PF00071 PRINTS:PR00449 SMART:SM00175 dictyBase:DDB_G0271736
GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005886 GO:GO:0007264
GO:GO:0015031 GenomeReviews:CM000151_GR EMBL:AAFI02000006
PROSITE:PS51419 eggNOG:COG1100 KO:K07976 EMBL:L21013
RefSeq:XP_645455.1 ProteinModelPortal:P34143 PRIDE:P34143
EnsemblProtists:DDB0185061 GeneID:8618083 KEGG:ddi:DDB_G0271736
OMA:PPSQQNC Uniprot:P34143
Length = 196
Score = 106 (42.4 bits), Expect = 0.00098, P = 0.00098
Identities = 33/134 (24%), Positives = 60/134 (44%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY--YTADVSLWMAHLHE 109
I+++G S VGK +IL R F + + N TI K T + LW E
Sbjct: 9 IILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPG 167
F + +++V+++ D + + K+WV I+ Q I++ +GNK D++
Sbjct: 69 RFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQ 128
Query: 168 HPVHAEYRRRLLKR 181
V E + + ++
Sbjct: 129 RKVTFEQGQEMAEQ 142
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 289 289 0.00088 115 3 11 22 0.38 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 616 (65 KB)
Total size of DFA: 219 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.14u 0.09s 23.23t Elapsed: 00:00:02
Total cpu time: 23.15u 0.09s 23.24t Elapsed: 00:00:02
Start: Fri May 10 12:19:52 2013 End: Fri May 10 12:19:54 2013