BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040295
(289 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|164564733|dbj|BAF98215.1| CM0216.310.nc [Lotus japonicus]
Length = 401
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/245 (73%), Positives = 215/245 (87%), Gaps = 2/245 (0%)
Query: 41 TDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
TD SLE RPGI +IGSSNVGKRT+LSRLLSV+ EDA DS S++ V+GWTIN KYY+ADV
Sbjct: 8 TDPVSLESRPGIFVIGSSNVGKRTLLSRLLSVDCEDAFDSDSQVNVHGWTINNKYYSADV 67
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGN 160
S+WMAHLHE+FS+R LP+ ++TALVMVF++NDLS+L AL+ WV D+Q FEILLCIGN
Sbjct: 68 SVWMAHLHEDFSVRDLPVFQRMTALVMVFDMNDLSSLTALQGWVSHTDIQNFEILLCIGN 127
Query: 161 KVDLLPGHPVHAEYRRRLLKREESSADPD--FCQSGISETEGSSLLGDEEPSWEIRRSCL 218
KVDL+PGHP HAEYRRRLLK E+SSA+ D F + GISE+EG+SLLGDEEPSW+IR+SCL
Sbjct: 128 KVDLVPGHPAHAEYRRRLLKLEDSSANLDLEFSEYGISESEGTSLLGDEEPSWDIRKSCL 187
Query: 219 EWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPS 278
EWCTE+ IE++EACASN DFDKCLS+DGD QGVERLYGALSAHMWPGM+LKSGD+I++PS
Sbjct: 188 EWCTENNIEFVEACASNADFDKCLSVDGDLQGVERLYGALSAHMWPGMILKSGDRISQPS 247
Query: 279 LPVKE 283
P KE
Sbjct: 248 FPEKE 252
>gi|357517615|ref|XP_003629096.1| hypothetical protein MTR_8g073110 [Medicago truncatula]
gi|355523118|gb|AET03572.1| hypothetical protein MTR_8g073110 [Medicago truncatula]
Length = 405
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/242 (73%), Positives = 209/242 (86%), Gaps = 2/242 (0%)
Query: 41 TDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
TD SLE RPGI IIGSS VGKRT+LSRLL+V+ EDA DS+SEL V+GWTINTKYYTADV
Sbjct: 9 TDPISLETRPGIFIIGSSTVGKRTLLSRLLAVDSEDAFDSASELNVHGWTINTKYYTADV 68
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGN 160
++WMAHLH+EFS+ ++P Q+TALVMVF++NDLS+L AL+ WV D+Q FEILLCIGN
Sbjct: 69 AVWMAHLHDEFSVENVPAFQQMTALVMVFDMNDLSSLTALQGWVAHTDIQNFEILLCIGN 128
Query: 161 KVDLLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCL 218
KVDL+P HPVHAEYRRRLLK E+S+ D +F + GISETEG+SLLG EEPSW+IR+SCL
Sbjct: 129 KVDLVPDHPVHAEYRRRLLKHEDSAVDLYSEFSEYGISETEGTSLLGSEEPSWDIRKSCL 188
Query: 219 EWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPS 278
EWC EH IE++EACASN DFDKCLS+DGD QGVER+YGALSAHMWPGMVLKSG++I +PS
Sbjct: 189 EWCAEHNIEFVEACASNADFDKCLSVDGDLQGVERIYGALSAHMWPGMVLKSGERINQPS 248
Query: 279 LP 280
P
Sbjct: 249 FP 250
>gi|388495120|gb|AFK35626.1| unknown [Medicago truncatula]
Length = 405
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/242 (73%), Positives = 209/242 (86%), Gaps = 2/242 (0%)
Query: 41 TDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
TD SLE RPGI IIGSS VGKRT+LSRLL+V+ EDA DS+SEL V+GWTINTKYYTADV
Sbjct: 9 TDPISLETRPGIFIIGSSTVGKRTLLSRLLAVDSEDAFDSASELNVHGWTINTKYYTADV 68
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGN 160
++WMAHLH+EFS+ ++P Q+TALVMVF++NDLS+L AL+ WV D+Q FEILLCIGN
Sbjct: 69 AVWMAHLHDEFSVENVPAFQQMTALVMVFDMNDLSSLTALQGWVAHTDIQNFEILLCIGN 128
Query: 161 KVDLLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCL 218
KVDL+P HPVHAEYRRRLLK E+S+ D +F + GISETEG+SLLG EEPSW+IR+SCL
Sbjct: 129 KVDLVPDHPVHAEYRRRLLKHEDSAVDLYSEFSEYGISETEGASLLGSEEPSWDIRKSCL 188
Query: 219 EWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPS 278
EWC EH IE++EACASN DFDKCLS+DGD QGVER+YGALSAHMWPGMVLKSG++I +PS
Sbjct: 189 EWCAEHNIEFVEACASNADFDKCLSVDGDLQGVERIYGALSAHMWPGMVLKSGERINQPS 248
Query: 279 LP 280
P
Sbjct: 249 FP 250
>gi|255583430|ref|XP_002532474.1| conserved hypothetical protein [Ricinus communis]
gi|223527799|gb|EEF29898.1| conserved hypothetical protein [Ricinus communis]
Length = 400
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/247 (74%), Positives = 210/247 (85%), Gaps = 2/247 (0%)
Query: 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWM 104
SLE RPGIL+IGSSNVGKRT+LSRLLSV+FED+SD +EL+ GWTINTKYYTADVS+WM
Sbjct: 5 SLENRPGILMIGSSNVGKRTLLSRLLSVDFEDSSDLPTELVARGWTINTKYYTADVSVWM 64
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDL 164
AHLH+ FSI SLPI LTALVMVF++NDLS+ A++ WV ID+ KFEILLCIGNKVDL
Sbjct: 65 AHLHDGFSISSLPIYSSLTALVMVFDMNDLSSFAAIQDWVSRIDIHKFEILLCIGNKVDL 124
Query: 165 LPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCT 222
+PGHPVHAEYRRRLLK EESS+D +F GI ETEGSSLLG EEP+WEI+RSC EWC+
Sbjct: 125 IPGHPVHAEYRRRLLKLEESSSDTYTEFSGFGILETEGSSLLGGEEPAWEIKRSCTEWCS 184
Query: 223 EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVK 282
EH IEYIEACASN DFDKCLS DGDSQGVERL ALSAHMWPGMVLKSG IT+P+L K
Sbjct: 185 EHSIEYIEACASNADFDKCLSADGDSQGVERLLVALSAHMWPGMVLKSGSSITQPTLLYK 244
Query: 283 EVMMKKD 289
E + +++
Sbjct: 245 EDLSEEE 251
>gi|225438428|ref|XP_002276437.1| PREDICTED: uncharacterized protein LOC100266179 [Vitis vinifera]
gi|296082571|emb|CBI21576.3| unnamed protein product [Vitis vinifera]
Length = 403
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/250 (70%), Positives = 211/250 (84%), Gaps = 2/250 (0%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVS 101
D S+EK PGILI+GSS+VGKRT+LSRLLSV+FED +DSSSE+LV+GWTINTKYYTADVS
Sbjct: 2 DAKSVEKTPGILIVGSSSVGKRTLLSRLLSVDFEDGADSSSEILVHGWTINTKYYTADVS 61
Query: 102 LWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNK 161
+WMAHLHE FSI +LP+ DQL A+VMVF++NDLS+ AL+ WV D+Q F+ILLC+GNK
Sbjct: 62 VWMAHLHEGFSIGNLPMLDQLAAVVMVFDMNDLSSFVALQDWVSHTDIQNFDILLCVGNK 121
Query: 162 VDLLPGHPVHAEYRRRLLKREESSADP--DFCQSGISETEGSSLLGDEEPSWEIRRSCLE 219
VDL+PGH H EYRRRL + + SA+P +F + GISETEGSSLLGDEE WEI RSCLE
Sbjct: 122 VDLVPGHSAHVEYRRRLQRLGDLSAEPYLEFSEYGISETEGSSLLGDEESPWEISRSCLE 181
Query: 220 WCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSL 279
WC+E IEYIEACASN DFDKCLS++GDSQGV+R+ GALSAHMWPGM LKSGDKI EPSL
Sbjct: 182 WCSERNIEYIEACASNADFDKCLSVNGDSQGVDRILGALSAHMWPGMTLKSGDKIMEPSL 241
Query: 280 PVKEVMMKKD 289
P + + +++
Sbjct: 242 PENQELSEEE 251
>gi|363807144|ref|NP_001242087.1| uncharacterized protein LOC100813878 [Glycine max]
gi|255641216|gb|ACU20885.1| unknown [Glycine max]
Length = 394
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 169/238 (71%), Positives = 204/238 (85%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
+ L+ RPGI IIGSSNVGKRT+LSRL SV+ +DA DS+S++ V+GWTIN KYYTADVSL
Sbjct: 4 QTDLQNRPGIFIIGSSNVGKRTLLSRLTSVDVDDAFDSASQVNVHGWTINNKYYTADVSL 63
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
WMAHLH++FS ++ +S ++TALVMVF++N+ S+L AL+ WV D+Q FEILLCIGNKV
Sbjct: 64 WMAHLHDDFSAANVTLSRRMTALVMVFDMNEPSSLAALREWVSRTDIQNFEILLCIGNKV 123
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCT 222
DL+P HP HAEYRRRLLK E+S+AD + GISE+EG+SLLGDEEPSW+IRRSCL+WCT
Sbjct: 124 DLVPSHPAHAEYRRRLLKLEDSAADFYSEEYGISESEGTSLLGDEEPSWDIRRSCLDWCT 183
Query: 223 EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLP 280
+H IE+IEACASN DFDKCLSIDGD QGVERLYGALSAHMWPGMVLKSG++I + S P
Sbjct: 184 DHNIEFIEACASNADFDKCLSIDGDLQGVERLYGALSAHMWPGMVLKSGNRINQLSFP 241
>gi|224068092|ref|XP_002302663.1| predicted protein [Populus trichocarpa]
gi|222844389|gb|EEE81936.1| predicted protein [Populus trichocarpa]
Length = 411
Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 180/253 (71%), Positives = 210/253 (83%), Gaps = 5/253 (1%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
+E S+D SLE RPGIL IGSSNVGKRT+LSRLLS++ EDA DSS+++ +GW+I+TKY
Sbjct: 3 EETKSSDFTSLETRPGILFIGSSNVGKRTLLSRLLSIDLEDAFDSSNQVFSHGWSIDTKY 62
Query: 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL 155
YTADVSLW+AHLHE FSI SLPI ++L ALVMVF+L+DLS+ ALK WV D+ KFEIL
Sbjct: 63 YTADVSLWIAHLHEGFSIGSLPIYNKLAALVMVFDLSDLSSFVALKDWVAGNDISKFEIL 122
Query: 156 LCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC----QSGISETEGSSLLGD-EEPS 210
LCIGNKVD +PGHPVHAEYRR+L K ES + D + GISE EGSSLLGD EEPS
Sbjct: 123 LCIGNKVDRIPGHPVHAEYRRQLRKIGESGSFDDLNIELDEFGISEIEGSSLLGDEEEPS 182
Query: 211 WEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
EI+RSC+EWCT+H IEYIEACASNVDFDKCL +DGDSQGVERLYGALSAHMWPGM+LKS
Sbjct: 183 REIKRSCIEWCTDHGIEYIEACASNVDFDKCLLVDGDSQGVERLYGALSAHMWPGMILKS 242
Query: 271 GDKITEPSLPVKE 283
+KI +P+LP KE
Sbjct: 243 DNKIIQPTLPDKE 255
>gi|449531342|ref|XP_004172645.1| PREDICTED: uncharacterized LOC101203083 [Cucumis sativus]
Length = 397
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 170/242 (70%), Positives = 208/242 (85%), Gaps = 3/242 (1%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
LE RPGIL++GSSNVGKR++LSRLL+V+FEDA +SSS++ V+GWTINT+YYTADVS+ +A
Sbjct: 12 LESRPGILLVGSSNVGKRSLLSRLLTVDFEDALNSSSQVSVHGWTINTQYYTADVSVSVA 71
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165
HLHE+FSI +LP+ +QL ALVMVF++NDLS+L L+ W +DLQ F++LLCIGNKVDL+
Sbjct: 72 HLHEDFSIEALPMFNQLAALVMVFDMNDLSSLVTLQDWATRVDLQNFDVLLCIGNKVDLV 131
Query: 166 PGHPVHAEYRRRLLKR--EESSAD-PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCT 222
PGHPVH EYR+ L K+ ++SS D D + GISETEGSSLLGDE+ SWE RRSCLEWC
Sbjct: 132 PGHPVHMEYRKLLQKQRLKDSSIDYSDTAEYGISETEGSSLLGDEDSSWETRRSCLEWCI 191
Query: 223 EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVK 282
E IE++EACASN DFD+CLSIDGD QGV+RLYGALSAHMWPGM LKSGDKIT+PSLP +
Sbjct: 192 ERNIEFLEACASNADFDQCLSIDGDIQGVQRLYGALSAHMWPGMTLKSGDKITKPSLPKE 251
Query: 283 EV 284
E+
Sbjct: 252 EL 253
>gi|356531331|ref|XP_003534231.1| PREDICTED: uncharacterized protein LOC100813911 [Glycine max]
Length = 395
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 168/239 (70%), Positives = 202/239 (84%), Gaps = 1/239 (0%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDAS-DSSSELLVNGWTINTKYYTADVS 101
+ L RPGI +IGSSNVGKRT+LSRL SV+ E A+ DS+S++ V+GWTIN KYYTADVS
Sbjct: 4 QTDLLNRPGIFLIGSSNVGKRTLLSRLTSVDVEGAAFDSASQVNVHGWTINNKYYTADVS 63
Query: 102 LWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNK 161
+WMAHL+++FS ++P+ ++TALVMVF++N+ S+L AL+ WV D+Q FEILLCIGNK
Sbjct: 64 IWMAHLNDDFSAANVPVFRRMTALVMVFDMNEPSSLAALREWVSHTDIQNFEILLCIGNK 123
Query: 162 VDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC 221
VDL+ GHP HAEYRRRLLK E+S+AD + GISE EG+SLLGDEEPSW+IRRSCLEWC
Sbjct: 124 VDLVTGHPAHAEYRRRLLKLEDSAADLYSEEYGISELEGTSLLGDEEPSWDIRRSCLEWC 183
Query: 222 TEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLP 280
T+H IE+IEAC SN DFDKCLSIDGD QGVERLYGALSAHMWPGMVLKSGD+I +PS P
Sbjct: 184 TDHNIEFIEACGSNADFDKCLSIDGDLQGVERLYGALSAHMWPGMVLKSGDRINQPSFP 242
>gi|326519352|dbj|BAJ96675.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 419
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 155/248 (62%), Positives = 191/248 (77%), Gaps = 2/248 (0%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M+ SLE RPG+L++G+ VGKRTILSRLL D SD SS +L GW I+TKYY+
Sbjct: 1 MEEGGDGSLEARPGVLLVGAPGVGKRTILSRLLGAEVPDTSDLSSGVLCQGWKIDTKYYS 60
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC 157
AD+S+W AHL E FS+ SLP DQL AL+MVF++ND S+L L++WV +ID+Q+FE+LLC
Sbjct: 61 ADISIWTAHLEEGFSLGSLPHLDQLAALIMVFDMNDESSLVTLRNWVGNIDVQRFEVLLC 120
Query: 158 IGNKVDLLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRR 215
IGNK DL+PGH H EYRRR+ K ES +D P++ GI+E EG LL +EEP EIR
Sbjct: 121 IGNKADLVPGHGAHVEYRRRMQKIGESCSDPHPEYLDFGINENEGCGLLSEEEPQIEIRD 180
Query: 216 SCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKIT 275
S L+WC +H IEYIEACASN DFDKCLS+DGDSQG+ERL+GALSAHMWPGM+LKSG+KIT
Sbjct: 181 STLKWCIDHNIEYIEACASNADFDKCLSVDGDSQGLERLFGALSAHMWPGMILKSGNKIT 240
Query: 276 EPSLPVKE 283
PSL K+
Sbjct: 241 APSLVEKD 248
>gi|449449930|ref|XP_004142717.1| PREDICTED: uncharacterized protein LOC101203083 [Cucumis sativus]
Length = 373
Score = 323 bits (827), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 153/228 (67%), Positives = 190/228 (83%), Gaps = 3/228 (1%)
Query: 60 VGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPIS 119
V ++ + LL+V+FEDA +SSS++ V+GWTINT+YYTADVS+ +AHLHE+FSI +LP+
Sbjct: 2 VSEQVVQEGLLTVDFEDALNSSSQVSVHGWTINTQYYTADVSVSVAHLHEDFSIEALPMF 61
Query: 120 DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLL 179
+QL ALVMVF++NDLS+L L+ W +DLQ F++LLCIGNKVDL+PGHPVH EYR+ L
Sbjct: 62 NQLAALVMVFDMNDLSSLVTLQDWATRVDLQNFDVLLCIGNKVDLVPGHPVHMEYRKLLQ 121
Query: 180 KR--EESSAD-PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNV 236
K+ ++SS D D + GISETEGSSLLGDE+ SWE RRSCLEWC E IE++EACASN
Sbjct: 122 KQRLKDSSIDYSDTAEYGISETEGSSLLGDEDSSWETRRSCLEWCIERNIEFLEACASNA 181
Query: 237 DFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKEV 284
DFD+CLSIDGD QGV+RLYGALSAHMWPGM LKSGDKIT+PSLP +E+
Sbjct: 182 DFDQCLSIDGDIQGVQRLYGALSAHMWPGMTLKSGDKITKPSLPKEEL 229
>gi|357165482|ref|XP_003580398.1| PREDICTED: uncharacterized protein LOC100844433 [Brachypodium
distachyon]
Length = 418
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/249 (62%), Positives = 191/249 (76%), Gaps = 3/249 (1%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M+ + SLE+RPG+L++G+ VGKRTILSRL++ D D SS +L GW I+TKYY+
Sbjct: 1 MEESRAGSLEERPGVLLVGAPGVGKRTILSRLVAAEVPDTYDLSSGVLCQGWKIDTKYYS 60
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC 157
AD+S+W AHL E FS+ SLP DQL ALVMVF++ND S+L L++WV SID+Q+FE+LLC
Sbjct: 61 ADLSIWTAHLEEGFSLGSLPHLDQLAALVMVFDMNDESSLLTLQNWVDSIDIQRFEVLLC 120
Query: 158 IGNKVDLLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSS-LLGDEEPSWEIR 214
IGNK DL+PGH H EYRRR+ + ESS D P++ GI+E+EG LL ++ P EIR
Sbjct: 121 IGNKADLVPGHGAHVEYRRRMQRIGESSTDPHPEYLDFGINESEGCGLLLSEDAPRIEIR 180
Query: 215 RSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKI 274
S L+WC E IEYIEACASN DFDKCLS+DGDSQGVERL GALSAHMWPGM+LKSG+KI
Sbjct: 181 DSTLQWCIEQNIEYIEACASNADFDKCLSVDGDSQGVERLLGALSAHMWPGMILKSGNKI 240
Query: 275 TEPSLPVKE 283
T PSL KE
Sbjct: 241 TAPSLAEKE 249
>gi|242074118|ref|XP_002446995.1| hypothetical protein SORBIDRAFT_06g026550 [Sorghum bicolor]
gi|241938178|gb|EES11323.1| hypothetical protein SORBIDRAFT_06g026550 [Sorghum bicolor]
Length = 415
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/243 (63%), Positives = 187/243 (76%), Gaps = 2/243 (0%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
SLE RPG+L++G+ VGKRTILSRLL+ D D SS +L GWTI TKYY+AD+S+
Sbjct: 2 EGSLEARPGVLLVGAPGVGKRTILSRLLAAEIPDVHDLSSGVLCQGWTIQTKYYSADLSI 61
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
W A+L EEFS+ SLP D+L ALVMVF++ND STL L+ W ++D+Q+FE+LLCIGNK
Sbjct: 62 WTANLGEEFSLGSLPHLDRLAALVMVFDMNDESTLLTLQSWAANVDIQRFEVLLCIGNKA 121
Query: 163 DLLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEW 220
DL+PGH H EYRR + K ESS+D PD+ GI+E+EG SLL +EEP EIR S +W
Sbjct: 122 DLVPGHSAHIEYRRCMQKLGESSSDLHPDYFDFGINESEGCSLLSEEEPCIEIRNSTAQW 181
Query: 221 CTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLP 280
C E IEYIEACASN DFDKCLS+DGDSQG+ERL GALSAHMWPGM+LKSG++IT PSL
Sbjct: 182 CIEQNIEYIEACASNADFDKCLSVDGDSQGLERLLGALSAHMWPGMILKSGNRITAPSLV 241
Query: 281 VKE 283
KE
Sbjct: 242 EKE 244
>gi|297797795|ref|XP_002866782.1| hypothetical protein ARALYDRAFT_920139 [Arabidopsis lyrata subsp.
lyrata]
gi|297312617|gb|EFH43041.1| hypothetical protein ARALYDRAFT_920139 [Arabidopsis lyrata subsp.
lyrata]
Length = 394
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 192/240 (80%), Gaps = 10/240 (4%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
+E RPG+L++GSS VGKRT+LSRLLSV FED+S+S S+ V+GWTINTKYYTADVS+ ++
Sbjct: 1 MESRPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESPSQTEVHGWTINTKYYTADVSVCIS 60
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165
H+ +++S+ +LP S L ALVMVF+L++LSTL AL+ WV D+ F+ILLCIGNKVD +
Sbjct: 61 HICDDYSLPNLPHSHPLVALVMVFDLSELSTLVALQDWVSHTDINNFDILLCIGNKVDRV 120
Query: 166 PGHPVHAEYRRRLLKREESSADP------DFCQSGISETEGSSLLGDEEPSWEIRRSCLE 219
P H H EYRRRLLK + DP D GISETEGSSLLG ++ S +IR +CLE
Sbjct: 121 PHHLAHDEYRRRLLK----ATDPSRILYSDIDDFGISETEGSSLLGSQDTSLDIRGACLE 176
Query: 220 WCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSL 279
WC+E+ IE+IEACASN DFDKCLS+DGDSQGVERL+GALSAHMWPGM+LKSGDKI +P L
Sbjct: 177 WCSENNIEFIEACASNPDFDKCLSVDGDSQGVERLFGALSAHMWPGMILKSGDKINDPVL 236
>gi|226494045|ref|NP_001141046.1| uncharacterized protein LOC100273127 [Zea mays]
gi|194702388|gb|ACF85278.1| unknown [Zea mays]
gi|194703286|gb|ACF85727.1| unknown [Zea mays]
gi|414585728|tpg|DAA36299.1| TPA: hypothetical protein ZEAMMB73_301643 [Zea mays]
Length = 415
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/243 (61%), Positives = 186/243 (76%), Gaps = 2/243 (0%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
SLE RPG+L++G+ VGKRTILS+ L D D SS +L GWTI TKYY+AD+S+
Sbjct: 2 EGSLEARPGVLLVGAPGVGKRTILSQFLGAEIPDVHDLSSGVLCQGWTIETKYYSADLSI 61
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
W A+L EEFS+ SLP D++ ALVMVF+++D STL L+ W S+D+Q+FEILLC+GNK
Sbjct: 62 WTANLGEEFSLDSLPHLDRVAALVMVFDMSDESTLLTLQSWAASVDIQRFEILLCVGNKA 121
Query: 163 DLLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEW 220
DL+PGH VH EYRRR+ ESS+D PD+ GI+E+EG SLL +EEP +IR S +W
Sbjct: 122 DLVPGHSVHVEYRRRMQNLGESSSDPHPDYFNFGINESEGCSLLSEEEPCIKIRNSTAQW 181
Query: 221 CTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLP 280
C E IEYIEACASN DFDKCLS+DGDSQG+ERL GALSAHMWPGM+LKSG++IT PSL
Sbjct: 182 CIEQNIEYIEACASNADFDKCLSVDGDSQGLERLLGALSAHMWPGMILKSGNRITVPSLV 241
Query: 281 VKE 283
K+
Sbjct: 242 EKQ 244
>gi|218195440|gb|EEC77867.1| hypothetical protein OsI_17133 [Oryza sativa Indica Group]
Length = 418
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/242 (61%), Positives = 185/242 (76%), Gaps = 2/242 (0%)
Query: 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW 103
SLE RPG+L++G+ VGKRTILSRLL+ D D SS +L GW I+TKYY+AD+S+W
Sbjct: 6 GSLEARPGVLVVGAPGVGKRTILSRLLAAEIPDTHDLSSGVLCQGWNIDTKYYSADLSVW 65
Query: 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163
AHL + FS+ SLP DQL ALVMVF+++D S+ L++WV S+D+Q+FEILLCIGNK D
Sbjct: 66 TAHLGQGFSLDSLPHLDQLDALVMVFDMSDESSFLTLQNWVSSVDVQRFEILLCIGNKAD 125
Query: 164 LLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC 221
L+ GH H EYRRR+ K ESS D P++ GI+E+EG LL +EEP EIR S WC
Sbjct: 126 LVLGHGAHVEYRRRMQKIGESSTDPHPEYLDFGINESEGCGLLSEEEPQIEIRDSASHWC 185
Query: 222 TEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPV 281
EH IEY+EACASN DFDKCLS++GDSQG+ERL GALSAHMWPGM+LKSG++IT PSL
Sbjct: 186 IEHNIEYVEACASNADFDKCLSVNGDSQGLERLLGALSAHMWPGMILKSGNRITVPSLVE 245
Query: 282 KE 283
KE
Sbjct: 246 KE 247
>gi|115460144|ref|NP_001053672.1| Os04g0584800 [Oryza sativa Japonica Group]
gi|38344275|emb|CAE03755.2| OSJNBa0013K16.4 [Oryza sativa Japonica Group]
gi|113565243|dbj|BAF15586.1| Os04g0584800 [Oryza sativa Japonica Group]
gi|215734897|dbj|BAG95619.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629432|gb|EEE61564.1| hypothetical protein OsJ_15925 [Oryza sativa Japonica Group]
Length = 418
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/242 (61%), Positives = 185/242 (76%), Gaps = 2/242 (0%)
Query: 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW 103
SLE RPG+L++G+ VGKRTILSRLL+ D D SS +L GW I+TKYY+AD+S+W
Sbjct: 6 GSLEARPGVLVVGAPGVGKRTILSRLLAAEIPDTHDLSSGVLCQGWNIDTKYYSADLSVW 65
Query: 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163
AHL + FS+ SLP DQL ALVMVF+++D S+ L++WV S+D+Q+FEILLCIGNK D
Sbjct: 66 TAHLGQGFSLDSLPHLDQLDALVMVFDMSDESSFLTLQNWVSSVDVQRFEILLCIGNKAD 125
Query: 164 LLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC 221
L+ GH H EYRRR+ K ESS D P++ GI+E+EG LL +EEP EIR S WC
Sbjct: 126 LVLGHGAHVEYRRRMQKIGESSTDPHPEYLDFGINESEGCGLLSEEEPQIEIRDSASHWC 185
Query: 222 TEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPV 281
EH IEY++ACASN DFDKCLS++GDSQG+ERL GALSAHMWPGM+LKSG++IT PSL
Sbjct: 186 IEHNIEYVKACASNADFDKCLSVNGDSQGLERLLGALSAHMWPGMILKSGNRITVPSLVE 245
Query: 282 KE 283
KE
Sbjct: 246 KE 247
>gi|10177111|dbj|BAB10401.1| unnamed protein product [Arabidopsis thaliana]
Length = 412
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/240 (66%), Positives = 195/240 (81%), Gaps = 2/240 (0%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
+E RPG+L++GSS VGKRT+LSRLLSV FED+S+SSS+ V+GWTINTKYYTADVS+ ++
Sbjct: 1 MESRPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESSSQTEVHGWTINTKYYTADVSVCIS 60
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165
H+ +E+S+ +LP S L ALVMVF+L++LSTL AL+ WV D+ F+ILLCIGNKVD +
Sbjct: 61 HICDEYSLPNLPNSHPLVALVMVFDLSELSTLVALQDWVSHTDINSFDILLCIGNKVDRV 120
Query: 166 PGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE 223
P H H EYRRRLLK + S D D GISETEGSSLLG E+ S +IR +CLEWC+E
Sbjct: 121 PHHLAHDEYRRRLLKASDPSRDLYSDIDDFGISETEGSSLLGSEDASLDIRGACLEWCSE 180
Query: 224 HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKE 283
+ IE+IEACASN DFDKCLS+DGDSQGVERL+GALSAHMWPGM+LKSGD+I EP LP E
Sbjct: 181 NNIEFIEACASNPDFDKCLSVDGDSQGVERLFGALSAHMWPGMILKSGDRINEPVLPQGE 240
>gi|18425013|ref|NP_569023.1| GTP binding protein [Arabidopsis thaliana]
gi|17529192|gb|AAL38822.1| unknown protein [Arabidopsis thaliana]
gi|21436273|gb|AAM51275.1| unknown protein [Arabidopsis thaliana]
gi|332010749|gb|AED98132.1| GTP binding protein [Arabidopsis thaliana]
Length = 393
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/237 (67%), Positives = 194/237 (81%), Gaps = 2/237 (0%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
+E RPG+L++GSS VGKRT+LSRLLSV FED+S+SSS+ V+GWTINTKYYTADVS+ ++
Sbjct: 1 MESRPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESSSQTEVHGWTINTKYYTADVSVCIS 60
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165
H+ +E+S+ +LP S L ALVMVF+L++LSTL AL+ WV D+ F+ILLCIGNKVD +
Sbjct: 61 HICDEYSLPNLPNSHPLVALVMVFDLSELSTLVALQDWVSHTDINSFDILLCIGNKVDRV 120
Query: 166 PGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE 223
P H H EYRRRLLK + S D D GISETEGSSLLG E+ S +IR +CLEWC+E
Sbjct: 121 PHHLAHDEYRRRLLKASDPSRDLYSDIDDFGISETEGSSLLGSEDASLDIRGACLEWCSE 180
Query: 224 HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLP 280
+ IE+IEACASN DFDKCLS+DGDSQGVERL+GALSAHMWPGM+LKSGD+I EP LP
Sbjct: 181 NNIEFIEACASNPDFDKCLSVDGDSQGVERLFGALSAHMWPGMILKSGDRINEPVLP 237
>gi|21553525|gb|AAM62618.1| unknown [Arabidopsis thaliana]
Length = 393
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 158/237 (66%), Positives = 194/237 (81%), Gaps = 2/237 (0%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
+E RPG+L++GSS VGKRT+LSRLLSV FED+S+SSS+ V+GWTINTKYYTADVS+ ++
Sbjct: 1 MESRPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESSSQTEVHGWTINTKYYTADVSVCIS 60
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165
H+ +E+S+ +LP S L ALVMVF+L++LSTL AL+ WV D+ F+ILLCIGNKVD +
Sbjct: 61 HICDEYSLPNLPNSHPLVALVMVFDLSELSTLVALQDWVSHTDINSFDILLCIGNKVDRV 120
Query: 166 PGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE 223
P H H EYRRRLLK + S + D GISETEGSSLLG E+ S +IR +CLEWC+E
Sbjct: 121 PHHLAHDEYRRRLLKASDPSRNLYSDIDDFGISETEGSSLLGSEDASLDIRGACLEWCSE 180
Query: 224 HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLP 280
+ IE+IEACASN DFDKCLS+DGDSQGVERL+GALSAHMWPGM+LKSGD+I EP LP
Sbjct: 181 NNIEFIEACASNPDFDKCLSVDGDSQGVERLFGALSAHMWPGMILKSGDRINEPVLP 237
>gi|255635038|gb|ACU17877.1| unknown [Glycine max]
Length = 229
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/208 (67%), Positives = 172/208 (82%), Gaps = 1/208 (0%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDAS-DSSSELLVNGWTINTKYYTADVS 101
+ L RPGI +IGSSNVGKRT+LSRL SV+ E A+ DS+S++ V+GWTIN KYYTADVS
Sbjct: 4 QTDLLNRPGIFLIGSSNVGKRTLLSRLTSVDVEGAAFDSASQVNVHGWTINNKYYTADVS 63
Query: 102 LWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNK 161
+WMAHL+++FS ++P+ ++TALVMVF++N+ S+L A + WV D+Q FEILLCIGNK
Sbjct: 64 IWMAHLNDDFSAANVPVFRRMTALVMVFDMNEPSSLAAPREWVSHTDIQNFEILLCIGNK 123
Query: 162 VDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC 221
VDL+ GHP HAEYRRRLLK E+S+AD + GISE EG+SLLGDEEPSW+IRRSCLEWC
Sbjct: 124 VDLVTGHPAHAEYRRRLLKLEDSAADLYSEEYGISELEGTSLLGDEEPSWDIRRSCLEWC 183
Query: 222 TEHRIEYIEACASNVDFDKCLSIDGDSQ 249
T+H IE+IEAC SN DFDKCLSIDGD Q
Sbjct: 184 TDHNIEFIEACGSNADFDKCLSIDGDLQ 211
>gi|116787243|gb|ABK24427.1| unknown [Picea sitchensis]
Length = 449
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 146/261 (55%), Positives = 183/261 (70%), Gaps = 6/261 (2%)
Query: 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN 92
+G+ E + SL RP I ++GS NVGK IL+RL+S++ E+ + SSSE+ +GWTI+
Sbjct: 14 YGQPEQ--QEDGSLSSRPSIFVVGSPNVGKHAILTRLVSLDAEEITLSSSEITCHGWTID 71
Query: 93 TKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
TKYYTADV +WMAHL E+ S + +S ALVMVF+L++ S+ + L+ WV +DL KF
Sbjct: 72 TKYYTADVCVWMAHLCEKTSEHARSLSKHCDALVMVFDLSNPSSFEVLQDWVSEVDLHKF 131
Query: 153 EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSAD--PDFCQSGISETEGSSLLG-DEEP 209
EILLCIGNK DLLP HP HAEYRR+L K ESS+D P+F GI +EG LL DEE
Sbjct: 132 EILLCIGNKADLLPSHPSHAEYRRKLQKCGESSSDPHPEFWNYGIDRSEGCGLLNEDEET 191
Query: 210 SWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
S EI+RSCLEWC ++ IEYIEACA N FDKCLSI+GDSQG+ R+ AL AHMWPGMV+K
Sbjct: 192 SEEIQRSCLEWCNQNNIEYIEACAINDRFDKCLSINGDSQGINRIQEALYAHMWPGMVIK 251
Query: 270 SGDKITE-PSLPVKEVMMKKD 289
S K+ P P KE D
Sbjct: 252 SQSKLAGIPVSPKKEEFSDDD 272
>gi|414585729|tpg|DAA36300.1| TPA: hypothetical protein ZEAMMB73_301643 [Zea mays]
Length = 391
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 165/243 (67%), Gaps = 26/243 (10%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
SLE RPG+L++G+ VGKRTILS+ L D D SS +L GWTI TKYY+AD+S+
Sbjct: 2 EGSLEARPGVLLVGAPGVGKRTILSQFLGAEIPDVHDLSSGVLCQGWTIETKYYSADLSI 61
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
W A+L EEFS+ SLP D++ ALVMVF+++D STL L+ W S+D+Q
Sbjct: 62 WTANLGEEFSLDSLPHLDRVAALVMVFDMSDESTLLTLQSWAASVDIQ------------ 109
Query: 163 DLLPGHPVHAEYRRRLLKREESSADP--DFCQSGISETEGSSLLGDEEPSWEIRRSCLEW 220
RRR+ ESS+DP D+ GI+E+EG SLL +EEP +IR S +W
Sbjct: 110 ------------RRRMQNLGESSSDPHPDYFNFGINESEGCSLLSEEEPCIKIRNSTAQW 157
Query: 221 CTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLP 280
C E IEYIEACASN DFDKCLS+DGDSQG+ERL GALSAHMWPGM+LKSG++IT PSL
Sbjct: 158 CIEQNIEYIEACASNADFDKCLSVDGDSQGLERLLGALSAHMWPGMILKSGNRITVPSLV 217
Query: 281 VKE 283
K+
Sbjct: 218 EKQ 220
>gi|168008872|ref|XP_001757130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691628|gb|EDQ77989.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 440
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 161/241 (66%), Gaps = 10/241 (4%)
Query: 39 DSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTA 98
D+ +++ RP +LI+GSSNVGK ++L RLL DS S +GWTI+TKYYTA
Sbjct: 13 DAGTASAVAGRPSVLIVGSSNVGKYSVLKRLLGKEELLKDDSWSGSTCHGWTIDTKYYTA 72
Query: 99 DVSLWMAHLHEEFSIRS--LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILL 156
DV +W A L E S S P+ + AL+MVF+L+D +T + L+ W+ + +L +E+ +
Sbjct: 73 DVCIWTARLDELDSKDSGSSPL-EHCEALLMVFDLSDPTTFEKLQQWMGASEL-SYEVQI 130
Query: 157 CIGNKVDLLPGHPVHAEYRRRLLKREESSADP--DFCQSGISETEGSSLLG---DEEPSW 211
C+GNK D LP H H EYRRRL+KR ESS+DP +F GI TEGSSLL DE+P
Sbjct: 131 CVGNKADKLPSHFGHIEYRRRLMKRGESSSDPHPEFMDFGIDRTEGSSLLAEDDDEDPEH 190
Query: 212 EIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSG 271
RR+ +EWCTE IEYIEACA N FDKC+S+DGD QGV R+ A+SAHMW G+V+K
Sbjct: 191 R-RRARMEWCTERGIEYIEACAINEAFDKCMSVDGDLQGVPRILDAISAHMWTGLVMKPA 249
Query: 272 D 272
D
Sbjct: 250 D 250
>gi|255571780|ref|XP_002526833.1| hypothetical protein RCOM_0686310 [Ricinus communis]
gi|223533837|gb|EEF35568.1| hypothetical protein RCOM_0686310 [Ricinus communis]
Length = 352
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/206 (56%), Positives = 133/206 (64%), Gaps = 43/206 (20%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
QE+D+T SLE RPGI +IGSSNVGKRT+LSRLLSV FEDASDSS+ELL GWTINTKY
Sbjct: 3 QEIDAT---SLENRPGIFMIGSSNVGKRTLLSRLLSVGFEDASDSSTELLACGWTINTKY 59
Query: 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL 155
YTADVS+WM HL FS SL I LTALVMVF++NDLS+ A++ WV ID+ KFEIL
Sbjct: 60 YTADVSVWMTHLDNGFSTNSLAIYSSLTALVMVFDMNDLSSFAAIQDWVSRIDIHKFEIL 119
Query: 156 LCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRR 215
LCI EY R E P+WEI+R
Sbjct: 120 LCI--------------EYSRS--------------------------YASEVPAWEIKR 139
Query: 216 SCLEWCTEHRIEYIEACASNVDFDKC 241
SC EWC+EH +EYIEACASN DFDKC
Sbjct: 140 SCNEWCSEHNVEYIEACASNADFDKC 165
>gi|302805224|ref|XP_002984363.1| hypothetical protein SELMODRAFT_120150 [Selaginella moellendorffii]
gi|300147751|gb|EFJ14413.1| hypothetical protein SELMODRAFT_120150 [Selaginella moellendorffii]
Length = 422
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/237 (51%), Positives = 147/237 (62%), Gaps = 24/237 (10%)
Query: 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAH 106
E RP IL +G++ VGK TI + L SSS W I+TKYYTA+V +W A
Sbjct: 20 ESRPSILCVGAAGVGKTTIANHLHEF-------SSSR---KSWKIDTKYYTANVGIWTAR 69
Query: 107 LHEEFS----IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
L +E + R +S Q ALVMVF+L+++S +W DL FEILLC+GNK
Sbjct: 70 LEQEQTDEVVKRLESLSGQCEALVMVFDLSNVSAFLFFSNWASRADLTAFEILLCVGNKA 129
Query: 163 DLLPGHPVHAEYRRRLLKREESSADP--DFCQSGISETEGSSLLGDEE--------PSWE 212
D LP H H EYRRRL + ESS+DP +F + GI EGSSLL DEE P E
Sbjct: 130 DRLPQHYGHVEYRRRLQRLGESSSDPHPEFLEFGIQRNEGSSLLDDEEVELAGPAPPVDE 189
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
+ S +EWC E+ IEYIEACA NV FD CLS+DGD QGV R+ GALSAHMWPGMV+K
Sbjct: 190 KKHSRIEWCIENGIEYIEACALNVAFDDCLSLDGDLQGVSRIRGALSAHMWPGMVMK 246
>gi|302782025|ref|XP_002972786.1| hypothetical protein SELMODRAFT_97900 [Selaginella moellendorffii]
gi|300159387|gb|EFJ26007.1| hypothetical protein SELMODRAFT_97900 [Selaginella moellendorffii]
Length = 402
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 146/237 (61%), Gaps = 25/237 (10%)
Query: 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAH 106
E RP IL +G++ VGK TI + L D SS W I+TKYYTA+V +W A
Sbjct: 20 ESRPSILCVGAAGVGKTTIANHL--------HDFSSR---KSWKIDTKYYTANVGIWTAR 68
Query: 107 LHEEFS----IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162
L +E + R +S Q ALVMVF+L+++S +W DL FEILLC+GNK
Sbjct: 69 LEQEQTDEVVKRLESLSGQCEALVMVFDLSNVSAFLFFSNWASRADLTGFEILLCVGNKA 128
Query: 163 DLLPGHPVHAEYRRRLLKREESSADP--DFCQSGISETEGSSLLGDEE--------PSWE 212
D LP H H EYRRRL + ESS+DP +F GI EGSSLL DEE P E
Sbjct: 129 DRLPQHYGHVEYRRRLQRLGESSSDPHPEFLDFGIQRNEGSSLLDDEEVELAGPAPPVDE 188
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
+ S +EWC E+ IEYIEACA +V FD CLS+DGD QGV R+ GALSAHMWPGMV+K
Sbjct: 189 KKHSRIEWCIENGIEYIEACALDVAFDDCLSLDGDLQGVSRIRGALSAHMWPGMVMK 245
>gi|224160927|ref|XP_002338272.1| predicted protein [Populus trichocarpa]
gi|222871589|gb|EEF08720.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 88/113 (77%), Gaps = 5/113 (4%)
Query: 134 LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC-- 191
LS+ ALK WV D+ KFEILLCIGNKVD +PGHPVHAEYRR+L K ES + D
Sbjct: 1 LSSFVALKDWVAGNDISKFEILLCIGNKVDRIPGHPVHAEYRRQLRKIGESGSFDDLNIE 60
Query: 192 --QSGISETEGSSLLGD-EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKC 241
+ GISE EGSSLLGD EEPS EI+RSC+EWCT+H IEYIEACASNVDFDKC
Sbjct: 61 LDEFGISEIEGSSLLGDEEEPSREIKRSCIEWCTDHGIEYIEACASNVDFDKC 113
>gi|413947784|gb|AFW80433.1| hypothetical protein ZEAMMB73_235506 [Zea mays]
Length = 452
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 79/149 (53%), Gaps = 53/149 (35%)
Query: 135 STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194
STL L+ W S+D+Q FEILLC+G+K DL+PGH V
Sbjct: 286 STLLTLQIWAASVDIQMFEILLCVGSKADLVPGHSVQ----------------------- 322
Query: 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERL 254
IEYIEACASN DFDK S+DGDSQG+ERL
Sbjct: 323 ------------------------------NIEYIEACASNADFDKFRSVDGDSQGLERL 352
Query: 255 YGALSAHMWPGMVLKSGDKITEPSLPVKE 283
+GALSAHMWPGM+LKSG++IT P L K+
Sbjct: 353 FGALSAHMWPGMILKSGNRITAPFLVEKQ 381
>gi|414880725|tpg|DAA57856.1| TPA: hypothetical protein ZEAMMB73_440060 [Zea mays]
Length = 126
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 75/157 (47%), Gaps = 61/157 (38%)
Query: 135 STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194
STL L+ W S+D+Q FEILLCIGNK DL+P H V
Sbjct: 4 STLLTLQIWAASVDIQMFEILLCIGNKADLIPDHSV------------------------ 39
Query: 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGV--- 251
IEYIEA ASN DFDK S+DGDSQG+
Sbjct: 40 -----------------------------QNIEYIEAFASNADFDKYRSVDGDSQGLVDG 70
Query: 252 -----ERLYGALSAHMWPGMVLKSGDKITEPSLPVKE 283
ERL GALSAHMWPG++LKS ++IT P L K+
Sbjct: 71 DSQGLERLLGALSAHMWPGIILKSRNRITTPFLVEKQ 107
>gi|388521097|gb|AFK48610.1| unknown [Lotus japonicus]
Length = 71
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 55/68 (80%)
Query: 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKR 181
+T LVMVF++NDLS+L AL+ WV D+Q FEILLCIGNKVD++PGH HA+YRRR LK
Sbjct: 1 MTTLVMVFDMNDLSSLTALQGWVSHTDIQNFEILLCIGNKVDVVPGHSAHADYRRRFLKL 60
Query: 182 EESSADPD 189
E+SS + D
Sbjct: 61 EDSSINLD 68
>gi|414591813|tpg|DAA42384.1| TPA: hypothetical protein ZEAMMB73_312992 [Zea mays]
Length = 286
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 64/132 (48%), Gaps = 53/132 (40%)
Query: 152 FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSW 211
FEILLC+GNK DL+PG+ V
Sbjct: 202 FEILLCVGNKADLVPGYSV----------------------------------------- 220
Query: 212 EIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSG 271
IEYIE CASN DFDKC S+DGDSQG++RL GALSAHMWPG+VLKS
Sbjct: 221 ------------QNIEYIEVCASNADFDKCRSVDGDSQGLKRLLGALSAHMWPGIVLKSR 268
Query: 272 DKITEPSLPVKE 283
+IT P K+
Sbjct: 269 IRITAPFFVEKQ 280
>gi|297592139|gb|ADI46923.1| AIP1m [Volvox carteri f. nagariensis]
Length = 325
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 43/233 (18%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVS 101
++ ++ P +L+ G+ VGK + L S +A S S + WTI TKYYT V
Sbjct: 7 EKLAITTAPRVLVAGAPLVGKSQLCQVLTS---SEAPRSGSCV---PWTIQTKYYTTRVE 60
Query: 102 LWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNK 161
+ E ++ ++P + Q ALV+VFNL + T D ++ + DL+ ++ L G +
Sbjct: 61 VC------EENVPNVPCT-QPEALVLVFNLAEPHTFDLVQSCMRHFDLEAVQLKLLCGTR 113
Query: 162 VDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC 221
D+L + A+Y +G ET +P+W + +W
Sbjct: 114 ADVL----LSADY-----------------SAGNVETSS-------QPAW--FKIVTDWS 143
Query: 222 TEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKI 274
++ +E+I C D L++DGD QGV R+ AL AH WP + + SG K+
Sbjct: 144 VQNGVEFIICCPHLPALDATLTLDGDKQGVARVMEALQAHEWPYLKVSSGSKL 196
>gi|159476508|ref|XP_001696353.1| adaptin-interacting protein [Chlamydomonas reinhardtii]
gi|158282578|gb|EDP08330.1| adaptin-interacting protein [Chlamydomonas reinhardtii]
Length = 402
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 44/223 (19%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
+ P +L+ G+ VGK +++ SD +++ W I TKYY DV++
Sbjct: 37 ENPLVLVAGAPGVGKTSLVRAFSGSAAPANSDGTAQ-----WHIETKYYRTDVNV----- 86
Query: 108 HEEFSIRSLPIS--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165
E S S+ S Q ALV+ F+L + T + DL+ E+ L +G D L
Sbjct: 87 -RECSDASIEASTGSQPEALVVAFSLKEPKTFTTARAMACLFDLEAVEVKLLVGTHADAL 145
Query: 166 PGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR 225
AE RE S E+P+W + +W ++
Sbjct: 146 APSASAAE-------RETS----------------------EQPAW--FQEAADWSIQNG 174
Query: 226 IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268
E I + + D L++DGD QGV R+ AL AHMWP + L
Sbjct: 175 FELIICSPAVLAVDAALTLDGDRQGVARVVEALQAHMWPNLEL 217
>gi|307106721|gb|EFN54966.1| hypothetical protein CHLNCDRAFT_134739 [Chlorella variabilis]
Length = 341
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 55/229 (24%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE-- 109
IL++G+S VGK +L + D++ W ++ KYYTADV + H+ +
Sbjct: 10 ILLLGASGVGKHRLLQSIRGQETVRQPDATYP-----WRLDNKYYTADVQFDVRHVDQCA 64
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
E + S A+V+VF+ ++ D+++ W + + E + L +G + D LP
Sbjct: 65 ELELESAGYE----AVVIVFDAGRQASFDSVQRWYEAAGGGEAELGVQLAVGTREDGLP- 119
Query: 168 HPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE 227
R K E + +PSW + + +WCTE +E
Sbjct: 120 ---------RSTKGEPA-----------------------KPSWLV--AAEKWCTEQLVE 145
Query: 228 YIEACASNVDFDKCLSIDGDS-------QGVERLYGALSAHMWPGMVLK 269
Y+E ++ + S GV+R+ AL AHMWPG+ LK
Sbjct: 146 YVETWSTTERQQQPAQEAASSGQGSEGASGVQRIREALEAHMWPGLRLK 194
>gi|428173683|gb|EKX42584.1| hypothetical protein GUITHDRAFT_175544 [Guillardia theta CCMP2712]
Length = 651
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 60/238 (25%)
Query: 52 ILIIGSSNVGKRTILSRLL--------SVNFEDASDSSSELLVNGWTINTKYYTADVSLW 103
++I G GKRT+L RL S++ A+ S+ L V KY+ A+V +
Sbjct: 15 LVIAGEQGAGKRTLLGRLAGEHRPPFPSISVSRAARDSTVLHVE-----NKYFNAEVKVK 69
Query: 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163
+ H +E +R ++ L++V++ + + + W+ +D ++L+C+ NK D
Sbjct: 70 VVHSVDE--VREERGEKEIEGLILVYDSSQEEGFQSFQQWLSLLDQLDLDLLICVANKTD 127
Query: 164 LLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE 223
LL G P S LL D E WC
Sbjct: 128 LLKGDP-------------------------------SELLQDAE----------NWCIL 146
Query: 224 HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPV 281
H+IE++ A F + D DS+G++R+ A+ H W +V K K P L +
Sbjct: 147 HQIEFVHCSALQDRF----TYDRDSEGLDRVVEAVGNHTWSNLVRKEDKKQAGPRLEI 200
>gi|297592057|gb|ADI46842.1| AIP1f [Volvox carteri f. nagariensis]
Length = 296
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 98/221 (44%), Gaps = 46/221 (20%)
Query: 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWM 104
++ + P +L+ G+ +VGK S+L V DS V WTI TKYYT++V +
Sbjct: 10 TVSRAPRVLVAGAPHVGK----SKLCQV-LTGTEDSPHGKCVP-WTIQTKYYTSNVEVCE 63
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDL 164
+ E I +LP AL++VFNL+ +T ++L+ +V +IDL E L G D
Sbjct: 64 VEVCEA-QITTLP-----EALLLVFNLSAPNTFESLQSFVKNIDLNVVEFKLLCGTYADA 117
Query: 165 L--PGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCT 222
L PG +AD SL +P W + W
Sbjct: 118 LIKPG----------------CTAD--------------SLDTAFQPDW--FHMAMRWSF 145
Query: 223 EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263
++ E++ C S + D L +DGD GV R+ AL H W
Sbjct: 146 DNGFEFVICCPSMPELDATLILDGDRHGVLRVMEALRTHPW 186
>gi|413950128|gb|AFW82777.1| hypothetical protein ZEAMMB73_960115 [Zea mays]
Length = 327
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 243 SIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKE 283
S+DGDSQG+ERL+GALSAHMWPGM+LKSG++I P L K+
Sbjct: 216 SVDGDSQGLERLFGALSAHMWPGMILKSGNRIIAPFLVQKQ 256
>gi|298705072|emb|CBJ28531.1| IRC6, uncharacterised protein interacting with AP adaptor complexes
[Ectocarpus siliculosus]
Length = 512
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 20/172 (11%)
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLCIGNKVDLLPGHP 169
++RS + L +++VF+L S+LD + W + D ++ +C+G+K+DLLP P
Sbjct: 20 LALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDP 79
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRS-CLEWCTEHRIEY 228
E++ +P +SG+ + ++ G +E RRS CL WC +H EY
Sbjct: 80 GDGTG---FGTGAETAPEP--AESGLEGGDAAAAEGLQE-----RRSRCLGWCLDHGFEY 129
Query: 229 IEA-CASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSL 279
+EA C + + + +GV R+ AL +++W GM S ++ PSL
Sbjct: 130 VEADCRDSYTGGELR----EKEGVPRIVEALQSNVWTGMEFLSSNR---PSL 174
>gi|255571772|ref|XP_002526829.1| conserved hypothetical protein [Ricinus communis]
gi|223533833|gb|EEF35564.1| conserved hypothetical protein [Ricinus communis]
Length = 70
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE 227
GI+ETEG LLG EEP+WEI+R C EWC+EH IE
Sbjct: 37 GITETEGRCLLGSEEPAWEIKRLCTEWCSEHNIE 70
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 29/34 (85%), Gaps = 3/34 (8%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRL 69
QE+++T SLE RPGI +IGSS++GKRT+LS++
Sbjct: 3 QEINAT---SLENRPGIFLIGSSSIGKRTLLSQV 33
>gi|449707117|gb|EMD46831.1| Ras family protein [Entamoeba histolytica KU27]
Length = 239
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
I+I+G VGK ++++LL F+D++ S++ NTK Y D +++W +
Sbjct: 44 IVIVGDEGVGKMCLINQLLYGYFKDSNKSTN--------CNTKNYYVDGKEVFLNVWNYN 95
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDL 164
++ S+ S + A+++VF+++D +T +++K W+ + K I +GNK DL
Sbjct: 96 GKQQKSMMSRSYYEGCNAVIVVFDISDRTTYESVKGWLKDVGYYAPKDIIKYLVGNKTDL 155
Query: 165 LPGHPVHAEYRRRLLKRE 182
V ++ + L KRE
Sbjct: 156 AANRIVSSQEAQDLAKRE 173
>gi|407040823|gb|EKE40348.1| Ras-likeGTP-binding protein YPT1, putative [Entamoeba nuttalli P19]
Length = 237
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
I+I+G VGK ++++LL F+D++ S++ NTK Y D +++W +
Sbjct: 44 IVIVGDEGVGKMCLINQLLYGYFKDSNKSTN--------CNTKNYYVDGKEVFLNVWNYN 95
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDL 164
++ S+ S + A+++VF+++D +T +++K W+ + K I +GNK DL
Sbjct: 96 GKQQKSMMSRSYYEGCNAVIVVFDISDRTTYESVKGWLKDVGYYAPKDIIKYLVGNKTDL 155
Query: 165 LPGHPVHAEYRRRLLKRE 182
V ++ + L KRE
Sbjct: 156 AANRIVSSQEAQDLAKRE 173
>gi|240848903|ref|NP_001155746.1| uncharacterized protein LOC100167316alpha- and
gamma-adaptin-binding protein p34 homolog [Acyrthosiphon
pisum]
gi|239790839|dbj|BAH71954.1| ACYPI008121 [Acyrthosiphon pisum]
Length = 267
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 70/206 (33%)
Query: 79 DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ----LTALVMVFNLNDL 134
++ +L N WTI+ KYYTAD++L SI +SDQ + A++++FN+++
Sbjct: 36 NNEGNILSNHWTIDCKYYTADINLCT-------SINLNELSDQFVRNINAIIILFNIDES 88
Query: 135 STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194
+ ++ + +P + + E+L+ + K + GH
Sbjct: 89 NIIETMNKCLPLVKRSQAEVLILLSEKN--IDGHV------------------------- 121
Query: 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYI--EACASNVDFDKCLSIDGDSQGVE 252
+ + EWC ++ E I E A + D+ G+E
Sbjct: 122 ------------------MSNNVFEWCRKNYFELIVLEEIADEM----------DTTGIE 153
Query: 253 RLYGALSAHMWPGMVLKSGDKITEPS 278
R+ AL AH WP LK+ +IT PS
Sbjct: 154 RVKQALYAHHWPN--LKAKCQITNPS 177
>gi|348505904|ref|XP_003440500.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Oreochromis niloticus]
Length = 321
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 52/184 (28%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTIN KYYTADV+L + + F + S I+ + A + F+ L L+ W+P ++
Sbjct: 54 WTINNKYYTADVNLCV--VSSTFHMSS-EIAQSMQAFIAYFDSKAKDGLQKLQPWIPVVE 110
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+L+ + ++V C++G++
Sbjct: 111 DLAPEVLILVCDRV----------------------------CENGVT------------ 130
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-DFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267
R +WC H E +E + D D +S GV+R+ AL+A++W +
Sbjct: 131 -----RHEAQQWCLAHAFELVELNPQELPDEDDDFP---ESTGVKRIVQALNANVWSSVE 182
Query: 268 LKSG 271
+K G
Sbjct: 183 MKDG 186
>gi|358342590|dbj|GAA50022.1| Ras and EF-hand domain-containing protein [Clonorchis sinensis]
Length = 658
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 23 DRLSFVRVLIFGRQEMDSTDRASLEKRP-GILIIGSSNVGKRTILSRLLSVNFEDASDSS 81
D+LSF R D+ R+ + +R + +G SNVGK +I+ R + F+ ++
Sbjct: 475 DQLSF-------RSNDDAVSRSQMAQRVFKVTFVGDSNVGKSSIIHRFVEGEFKSNLGAT 527
Query: 82 SELLVNGWTINTKYYTAD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLST 136
G +NTK+ D + LW E F + + A+++V+++ + +
Sbjct: 528 V-----GVDVNTKFVECDNVNVILQLWDTAGLERFRGLTRQYYRRADAVILVYDVTNTQS 582
Query: 137 LDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+++ WV + + ++ +L+ + NK+DLLP P
Sbjct: 583 FLSVRKWVQEVRDNTDEYTVLMILSNKLDLLPEVP 617
>gi|340727575|ref|XP_003402117.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Bombus terrestris]
Length = 264
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
IR ++WC ++R E IE +VD + S + + G+ER+ AL AHMWP M+LK
Sbjct: 113 IRNKVIKWCLQNRFELIELNRPDVDASEADS-ENNKYGIERIIEALHAHMWPNMILK 168
>gi|405952402|gb|EKC20219.1| Alpha- and gamma-adaptin-binding protein p34 [Crassostrea gigas]
Length = 327
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 51/193 (26%)
Query: 88 GWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI 147
W I+TKYYTA++ L ++ ++ + +D + A+V+ FN + D K W+P
Sbjct: 28 SWNIDTKYYTAEIKLCTT---KKRTVGTEEFADGVEAIVIYFNAGQEESFDLAKAWLP-- 82
Query: 148 DLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207
L I + LL C++
Sbjct: 83 ------YLKEISPAIQLL------------------------VCKNI------------P 100
Query: 208 EPSWEIRRSCLEWCTEHRIEYIE-ACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266
+ S +R S WC ++ E +E VD D ++ G++R+ AL AHMWP M
Sbjct: 101 QKSANLRHSIHTWCLDNDFELVELEPEVKVDEDDDFQ---ETTGIQRIIQALHAHMWPNM 157
Query: 267 VLKSGDKITEPSL 279
+LK P +
Sbjct: 158 ILKESPHTVSPYM 170
>gi|91080527|ref|XP_972163.1| PREDICTED: hypothetical protein [Tribolium castaneum]
gi|270005544|gb|EFA01992.1| hypothetical protein TcasGA2_TC007613 [Tribolium castaneum]
Length = 256
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 75 EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL 134
ED DS+ +V+ WTI+TKYYTA+V + H E RS +D + ALV+ + N
Sbjct: 32 EDPLDSTK--IVHTWTIDTKYYTAEVDVIGITEHHE---RSQAFNDNVEALVIHIDTNKE 86
Query: 135 STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194
+ L L+ W + EI L I N +C +
Sbjct: 87 NGLKDLEMWSSLQEDCDPEIKLLIAN-----------------------------YCTNE 117
Query: 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERL 254
T+ ++ EWC +H E IE + D+ I + GVER+
Sbjct: 118 TKITKAAA---------------TEWCLKHGFELIELYPGSQTCDQ--DIIEEKIGVERV 160
Query: 255 YGALSAHMWPGMVLKSGDK 273
AL H W + +K+ +K
Sbjct: 161 IEALQTHTWSNLNMKNQEK 179
>gi|338717826|ref|XP_003363704.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like [Equus
caballus]
Length = 301
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ + S LD++ W+P +
Sbjct: 33 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSSQKSGLDSVSSWLPLAE 89
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C++G+S
Sbjct: 90 AWLPEVMILVCDRV----------------------------CENGVS------------ 109
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 110 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 157
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 158 SNVVMKN 164
>gi|149691836|ref|XP_001496808.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
isoform 1 [Equus caballus]
Length = 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ + S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSSQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C++G+S
Sbjct: 104 AWLPEVMILVCDRV----------------------------CENGVS------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|413921379|gb|AFW61311.1| hypothetical protein ZEAMMB73_139075 [Zea mays]
Length = 335
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 241 CLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKE 283
C S+DGDSQG+E L G LSAHMWPG++LKSG++IT P L K+
Sbjct: 94 CRSVDGDSQGLELLLGELSAHMWPGIILKSGNRITAPFLVEKQ 136
>gi|440291848|gb|ELP85090.1| RAB, putative [Entamoeba invadens IP1]
Length = 187
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
P + ++G+++VGK ++ RL+ F D S+ T DVS+W E
Sbjct: 6 PKLCLLGNASVGKSCLIDRLVKGTFSDEVHSTVSCNYVKRTFIVNGIVQDVSIWDTAGQE 65
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL 164
++ SI + ALV VF++ D + D+LK W + K E+LL +GNK+DL
Sbjct: 66 KYRSISEMYYRGSAGALV-VFDVTDTKSFDSLKRWFNELKNVSPKCEVLL-VGNKIDL 121
>gi|380025570|ref|XP_003696543.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like [Apis
florea]
Length = 264
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
IR ++WC ++R E IE ++D + S + + G+ER+ AL AHMWP M LK
Sbjct: 113 IRNKVIKWCLQNRFELIELNRPDIDASEADS-ENNKYGIERIIEALHAHMWPNMTLK 168
>gi|427787611|gb|JAA59257.1| Putative alpha- and gamma-adaptin binding protein [Rhipicephalus
pulchellus]
Length = 271
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110
G LI+ + ++ ++ D S + W + TKYYTA V L H
Sbjct: 7 GCLIVSCCDDSTDGLVKEIVDSPSVSPVDVSEGVKAFPWAVETKYYTATVYL---HTTSA 63
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPV 170
+ ++ + L+++FN N TL+ W ID + +++L +
Sbjct: 64 SVVDYDDSAENIHGLIVLFNPNQKDTLEQADKW---IDKCRCDVVLLV------------ 108
Query: 171 HAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIE 230
R S+A+P G+S R+ LEWC E E IE
Sbjct: 109 --------CGRCPSAAEP----QGLS-----------------RQQVLEWCVERSCELIE 139
Query: 231 ACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
+ D ++ D+ GV R+ AL AH WP + +K
Sbjct: 140 TQPNEEDDEE------DATGVRRIVEALHAHPWPQLEMK 172
>gi|66509718|ref|XP_625052.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
isoform 2 [Apis mellifera]
Length = 264
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
IR ++WC ++R E IE ++D + S + + G+ER+ AL AHMWP M LK
Sbjct: 113 IRNKVIKWCLQNRFELIELNRPDIDASEADS-ENNKYGIERIIEALHAHMWPNMTLK 168
>gi|321478913|gb|EFX89869.1| hypothetical protein DAPPUDRAFT_299986 [Daphnia pulex]
Length = 216
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+LI+G VGK I+ R ++ FED S + E L + + K YT + +W E
Sbjct: 17 VLILGDGGVGKTCIMGRFINDQFEDNSFHTIGVEFLNKDFALTGKNYT--LQIWDTAGQE 74
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
F P ++VF+L+D S+ L W D Q + ++ +GNKV
Sbjct: 75 RFKSLRTPFYRGTDICLLVFSLDDKSSFSNLSLWRQEFLHYADIQDPQDYPFII-VGNKV 133
Query: 163 DL-LPGHPVHAE 173
DL VHAE
Sbjct: 134 DLGAASRTVHAE 145
>gi|431895886|gb|ELK05304.1| Alpha- and gamma-adaptin-binding protein p34 [Pteropus alecto]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 56/185 (30%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F I + I++ + A V+ F+ S LD++ W+P ++
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLITA-EIAESVQAFVVYFDSTQKSGLDSVSTWLPLVE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G++
Sbjct: 104 GWLPEVMILVCDRVS----------------------------ENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGD---SQGVERLYGALSAHMWPG 265
R+ EWC +H E +E + D D D S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPED-----DDDFPESTGVKRIVQALNANVWSN 173
Query: 266 MVLKS 270
+V+K+
Sbjct: 174 VVMKN 178
>gi|355666136|gb|AER93435.1| Alpha- and gamma-adaptin-binding protein p34 [Mustela putorius
furo]
Length = 288
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F I + I++ + A V+ F+ S LD++ W+P +
Sbjct: 21 WTIDNKYYSADINLCV--VPNKFLITA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 77
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C++G++
Sbjct: 78 AWLPEVMILVCDRV----------------------------CENGVN------------ 97
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 98 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 145
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 146 SNVVMKN 152
>gi|167392767|ref|XP_001740289.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165895680|gb|EDR23316.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 227
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
I+ +G VGK ++++LL F+D + S++ NTK Y D +++W
Sbjct: 44 IVTVGDEGVGKTCLINQLLYGYFKDNNKSTN--------CNTKSYYVDDKEVFLNVWNYS 95
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDL 164
+ S+ S A+++VF+++D +T +++K W+ + K I IGNK DL
Sbjct: 96 GKQRNSMVSKSYYSSANAVIVVFDISDRTTYESVKGWLKDVGYYAPKDIIKYLIGNKTDL 155
Query: 165 LPGHPVHAEYRRRLLKRE 182
V ++ L KRE
Sbjct: 156 AANRIVSSQEAEDLAKRE 173
>gi|322795122|gb|EFZ17962.1| hypothetical protein SINV_05258 [Solenopsis invicta]
Length = 219
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++GS VGK +++ R L NFE AS + N IN + +W E F
Sbjct: 8 VVMLGSQGVGKTSLIGRYLG-NFEHASPTIGASFFN-CKINLDDMKIKLQVWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L +T A+K WV + ++++ +L IGNK DL+
Sbjct: 66 RSMAPMYYRNSNAAMLVFDLTQYNTFAAIKSWVKELQQNVEETMVLALIGNKSDLVQQRQ 125
Query: 170 VHAEYRRR 177
V E +R
Sbjct: 126 VDGEEGQR 133
>gi|440300438|gb|ELP92907.1| hypothetical protein EIN_312790 [Entamoeba invadens IP1]
Length = 744
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S+VGK ++R + F D + S+ + V I K T + LW E F
Sbjct: 557 IIMIGESSVGKTCCMNRYTTNEFSDMTKSTVGVGVGSKDIVVKDKTVKLQLWDTAGQERF 616
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLPGH 168
+ S V+VF++++ + + ++ W+ + +K+E +++ GNK+DL G
Sbjct: 617 ATLSSNYFRSALGGVIVFDVSNRQSFENVETWIE--ECKKYEEKRVIVLAGNKIDLGEGR 674
Query: 169 PVHAE 173
V E
Sbjct: 675 VVTKE 679
>gi|66475702|ref|XP_627667.1| RAS small GTpases RIC1/ypt1 [Cryptosporidium parvum Iowa II]
gi|67619548|ref|XP_667653.1| small GTP binding protein rab1a [Cryptosporidium hominis TU502]
gi|32398899|emb|CAD98364.1| small GTP binding protein rab1a, probable [Cryptosporidium parvum]
gi|46229098|gb|EAK89947.1| RAS small GTpases RIC1/ypt1 [Cryptosporidium parvum Iowa II]
gi|54658806|gb|EAL37422.1| small GTP binding protein rab1a [Cryptosporidium hominis]
Length = 203
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + TI+ + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + D +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRV 130
Query: 170 VHAEYRRRL 178
V ++ R L
Sbjct: 131 VTSDEGREL 139
>gi|332373492|gb|AEE61887.1| unknown [Dendroctonus ponderosae]
Length = 264
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 83/224 (37%), Gaps = 56/224 (25%)
Query: 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
P I+++ SSN ++++ + E ++ S L W I+TKYY+A V+L
Sbjct: 5 PTIVVVSSSNTKPKSLIKLITK---ETPTELPSGLFKQPWKIDTKYYSAIVNLIGVAELF 61
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169
EFS L +Q+ AL++ + N S LD LK W EI L I N
Sbjct: 62 EFSEDFL---NQIEALIIHMDSNKSSGLDDLKQWEKLETESDPEIKLLIAN--------- 109
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYI 229
+C T R + WC E++
Sbjct: 110 --------------------YCNEETKIT---------------RSDAVTWCLNKGFEFV 134
Query: 230 EACASNVDFDKCLSIDGD----SQGVERLYGALSAHMWPGMVLK 269
E S D + D D GV R+ +L AH W +VLK
Sbjct: 135 ELYPS--DMQTIQNSDEDIIIEKFGVNRVIESLEAHTWSNLVLK 176
>gi|281347346|gb|EFB22930.1| hypothetical protein PANDA_002205 [Ailuropoda melanoleuca]
Length = 290
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 22 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 78
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C++G++
Sbjct: 79 AWLPEVMILVCDRV----------------------------CENGVN------------ 98
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 99 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 146
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 147 SNVVMKN 153
>gi|301756959|ref|XP_002914312.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Ailuropoda melanoleuca]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C++G++
Sbjct: 104 AWLPEVMILVCDRV----------------------------CENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|159795493|pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + TI+ + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + D +K W+ ID E + L +GNK DL+
Sbjct: 72 RTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRV 131
Query: 170 VHAEYRRRL 178
V ++ R L
Sbjct: 132 VTSDEGREL 140
>gi|123977243|ref|XP_001330794.1| Ras family protein [Trichomonas vaginalis G3]
gi|121912605|gb|EAY17425.1| Ras family protein [Trichomonas vaginalis G3]
Length = 203
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++GSS VGK +I+ RL+ + + S+ + +TI T A S+W E F
Sbjct: 11 IVVVGSSGVGKTSIVQRLVDGIYSEEKQSTVGVEFKTFTITTDSEVAKFSIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF----EILLCIGNKVDLLPG 167
S ++ F L++ + L W+ DLQ ++L IGNK+D G
Sbjct: 71 RSVSKAYFRGAAGGILTFALDNQQSFQELDGWLN--DLQSLATPNAVILLIGNKLDCNEG 128
Query: 168 HPVHAE-----YRRRLLKREESSA 186
+ + +R L+ E+SA
Sbjct: 129 RQITTQEAMDYAQRHGLEYLETSA 152
>gi|440296340|gb|ELP89167.1| hypothetical protein EIN_485590 [Entamoeba invadens IP1]
Length = 226
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
L++G S VGK + RL+ F++ +S + I + LW E F
Sbjct: 10 LLLGESGVGKTACVQRLVETTFDNMYTASVGVDFKIKEIPIGDEVVRIELWDTAGQERFR 69
Query: 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLCIGNKVDLLPGHPVH 171
+ A V++F+L D ++ D + +W+ + DLQK I++ GNK DL V
Sbjct: 70 SITKTYYRGSDAAVVMFSLTDKNSFDRIAYWLNEMQDLQKRPIVVLAGNKCDLTSERSVF 129
Query: 172 AEYRRRLLKREESSADPDFCQSGISETEGSSL 203
AE E ++A PD S G ++
Sbjct: 130 AE--------EVTAAFPDLKYFETSAESGKNI 153
>gi|332024332|gb|EGI64531.1| Ras-related protein RabJ [Acromyrmex echinatior]
Length = 219
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++GS VGK +++ R + N E S + + N IN + + +W E F
Sbjct: 8 VIMLGSQGVGKTSLIGRYVG-NVEHVSPTIAASFFN-CKINLEDVKIKLQVWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L ST A+K WV + ++++ +L+ IGNK DL+
Sbjct: 66 RSMAPMYYRTCNAALLVFDLTQYSTFVAIKSWVKELQQNVEETMVLVLIGNKSDLVQKRQ 125
Query: 170 VHAEYRRR 177
V E RR
Sbjct: 126 VDGEEGRR 133
>gi|156552412|ref|XP_001600325.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Nasonia vitripennis]
Length = 275
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 134 LSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSAD---- 187
LS ++H + ID + + +ILLC + + P + Y + E + D
Sbjct: 35 LSQQADIEHHLLDIDNKYYTAQILLCTTKNLSIDPTN-----YEAMIFYYELETEDALHL 89
Query: 188 ------PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKC 241
P QS E E L+ + P+ +R +EWC + E IE S+
Sbjct: 90 VEEQVLPLLAQS---EAEILLLVCNSIPNTAVREKVIEWCALRKFELIELEHSDPQDIMD 146
Query: 242 LSIDGDSQGVERLYGALSAHMWPGMVLKSGDKIT--EPSLPVKEV 284
L D G++R+ AL HMWP + LK K T EP V EV
Sbjct: 147 LEEDQSKYGIDRIIEALETHMWPNINLKDSRKTTIQEPEPEVNEV 191
>gi|350412137|ref|XP_003489553.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Bombus impatiens]
Length = 264
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
IR ++WC ++R E IE +V + S + + G+ER+ AL AHMWP M+LK
Sbjct: 113 IRNEVIKWCLQNRFELIELNRPDVGASEADS-ENNKYGIERIIEALHAHMWPNMILKG 169
>gi|449270653|gb|EMC81312.1| Alpha- and gamma-adaptin-binding protein p34, partial [Columba
livia]
Length = 295
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 52/182 (28%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD+ L + + F + + I++ + A V+ F+ S LD++ W+P ++
Sbjct: 22 WTIDNKYYSADIHLCV--VPNAFLVTA-DIAESVQAFVVYFDSTIKSGLDSVSEWLPLME 78
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + N+V ++G++
Sbjct: 79 EWLPEVMILVCNRV----------------------------SENGVN------------ 98
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-DFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267
R+ EWC +H E +E + D D +S GV+R+ AL+A++W +V
Sbjct: 99 -----RQKAQEWCIKHGFELVELSPEELPDEDDDFP---ESTGVKRIVQALNANVWSNVV 150
Query: 268 LK 269
+K
Sbjct: 151 MK 152
>gi|407038920|gb|EKE39375.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 194
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG +VGK I+ R F D S+ + N + T + LW E F
Sbjct: 11 VLIIGEPSVGKTAIMERYCEDKFHDELISTIGVDFNSKLVKVGDLTIKLQLWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL-QKFEILLCIGNKVDL 164
+ ++V++++D+ + + + HW+ + Q+ ++ +GNK+DL
Sbjct: 71 RNVTSSYYKGTQGCLVVYDVSDIESFNKITHWIQEYQIEQEIAFIIIVGNKIDL 124
>gi|20071057|gb|AAH27311.1| RIKEN cDNA 2310007F21 gene [Mus musculus]
Length = 316
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+A+++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSAEINLCV--VPSKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C GI+
Sbjct: 104 AWLAEVMILVCDRV----------------------------CDDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYI-----EACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E + E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQQAQEWCIKHGFELVELNPEELPEEDNDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+KS
Sbjct: 172 SNVVMKS 178
>gi|110625673|ref|NP_080133.1| alpha- and gamma-adaptin-binding protein p34 [Mus musculus]
gi|341940165|sp|Q8R2R3.2|AAGAB_MOUSE RecName: Full=Alpha- and gamma-adaptin-binding protein p34
gi|74204801|dbj|BAE35463.1| unnamed protein product [Mus musculus]
gi|148694097|gb|EDL26044.1| mCG9286, isoform CRA_b [Mus musculus]
Length = 316
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+A+++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSAEINLCV--VPSKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C GI+
Sbjct: 104 AWLAEVMILVCDRV----------------------------CDDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQQAQEWCIKHGFELVELNPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+KS
Sbjct: 172 SNVVMKS 178
>gi|383859766|ref|XP_003705363.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
isoform 2 [Megachile rotundata]
Length = 258
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
IR ++WC +++ E IE +VD + S + + G+ER+ AL AHMWP M+LK
Sbjct: 113 IRDKVIKWCLQNKFELIEFNRPDVDASEADS-EYNKYGIERIIEALHAHMWPNMILK 168
>gi|351713853|gb|EHB16772.1| Alpha- and gamma-adaptin-binding protein p34 [Heterocephalus
glaber]
Length = 315
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ + S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLV-TPEIAESVQAFVVYFDSSQKSGLDSVSPWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C G+S
Sbjct: 104 TWVPEVMILVCDRV----------------------------CDDGVS------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|148694096|gb|EDL26043.1| mCG9286, isoform CRA_a [Mus musculus]
Length = 319
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+A+++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 51 WTIDNKYYSAEINLCV--VPSKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 107
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C GI+
Sbjct: 108 AWLAEVMILVCDRV----------------------------CDDGIN------------ 127
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 128 -----RQQAQEWCIKHGFELVELNPEELPEEDDDFP-------ESTGVKRIVQALNANVW 175
Query: 264 PGMVLKS 270
+V+KS
Sbjct: 176 SNVVMKS 182
>gi|383859764|ref|XP_003705362.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
isoform 1 [Megachile rotundata]
Length = 264
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
IR ++WC +++ E IE +VD + S + + G+ER+ AL AHMWP M+LK
Sbjct: 113 IRDKVIKWCLQNKFELIEFNRPDVDASEADS-EYNKYGIERIIEALHAHMWPNMILK 168
>gi|345795114|ref|XP_853575.2| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Canis
lupus familiaris]
Length = 315
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCVV---PNKYLVTAEIAESVQAFVIYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C++G++
Sbjct: 104 AWLPEVMILVCDRV----------------------------CENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIIQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|209881799|ref|XP_002142337.1| Ras small GTPase RIC1/ypt1 protein [Cryptosporidium muris RN66]
gi|209557943|gb|EEA07988.1| Ras small GTPase RIC1/ypt1 protein, putative [Cryptosporidium muris
RN66]
Length = 203
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTITLENKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + D +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRV 130
Query: 170 VHAEYRRRL 178
V ++ + L
Sbjct: 131 VTSDEGKEL 139
>gi|354476637|ref|XP_003500530.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Cricetulus griseus]
gi|344248215|gb|EGW04319.1| Alpha- and gamma-adaptin-binding protein p34 [Cricetulus griseus]
Length = 316
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+A+++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSAEINLCV--VPSKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C+ G+S
Sbjct: 104 AWLPEVMILVCDRV----------------------------CEDGVS------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELNPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|326926881|ref|XP_003209625.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Meleagris gallopavo]
Length = 348
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 52/183 (28%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD+ L + ++ + I++ + A V+ F+ + S LD++ W+P +
Sbjct: 90 WTIDNKYYSADIHLCVV---PNTALVTGAIAESVQAFVVYFDSSTKSGLDSVSEWLPLTE 146
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + N+V + G++
Sbjct: 147 DWLPEVMILVCNRV----------------------------SEHGVN------------ 166
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-DFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267
R+ EWC +H E +E + D D +S GV+R+ AL+A++W +V
Sbjct: 167 -----RQKAQEWCIKHGFELVELSPEELPDEDDDFP---ESTGVKRIVQALNANVWSNVV 218
Query: 268 LKS 270
+K+
Sbjct: 219 MKN 221
>gi|440297914|gb|ELP90555.1| hypothetical protein EIN_019940 [Entamoeba invadens IP1]
Length = 204
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M T A + +LIIG S VGK +L R F + S L G KY+T
Sbjct: 1 MQPTANAQCDYTFKVLIIGESGVGKTAVLERYCDNVFNE-----SLLSTVGVDFKAKYFT 55
Query: 98 AD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQ 150
D V LW E+F + ++ F++ DL+T + + +W+ + + Q
Sbjct: 56 IDSKKIKVQLWDTAGQEKFRNITSSYYRGTHGCIVAFDVTDLATFEKISYWLGELANEKQ 115
Query: 151 KFEILLCIGNKVDLLPGHPVHAE 173
+ EI++ +GNK+D P V E
Sbjct: 116 QPEIII-LGNKID-APNRKVTDE 136
>gi|67478653|ref|XP_654710.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56471775|gb|EAL49319.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790060|dbj|BAD82826.1| small GTPase EhRabC6 [Entamoeba histolytica]
gi|449708421|gb|EMD47886.1| small GTPase EhRabC6, putative [Entamoeba histolytica KU27]
Length = 194
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG +VGK I+ R F D S+ + N + T + LW E F
Sbjct: 11 VLIIGEPSVGKTAIMERYCEDKFHDELISTIGVDFNSKLVKVGDLTIKLQLWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL-QKFEILLCIGNKVDL 164
+ ++V++++D+ + + + HW+ + Q+ ++ +GNK+DL
Sbjct: 71 RNVTSSYYKGTQGCLVVYDVSDVESFNKITHWIQEYQIEQEIAFIIIVGNKIDL 124
>gi|70994486|ref|XP_752022.1| RAB GTPase Ypt5 [Aspergillus fumigatus Af293]
gi|119500926|ref|XP_001267220.1| RAB GTPase Ypt5, putative [Neosartorya fischeri NRRL 181]
gi|66849656|gb|EAL89984.1| RAB GTPase Ypt5, putative [Aspergillus fumigatus Af293]
gi|119415385|gb|EAW25323.1| RAB GTPase Ypt5, putative [Neosartorya fischeri NRRL 181]
gi|159125065|gb|EDP50182.1| RAB GTPase Ypt5, putative [Aspergillus fumigatus A1163]
Length = 218
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 43 RASLEKRPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TK 94
RA RPG ++++G S VGK +++ R + F+D +S+ TI+ +
Sbjct: 4 RAPAGTRPGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDE 63
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E + + V+V+++ S+LD K WV + Q E
Sbjct: 64 STTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANEN 123
Query: 154 -ILLCIGNKVDLLPGHP 169
++ GNK+DL+ HP
Sbjct: 124 IVIALAGNKLDLVTEHP 140
>gi|384245047|gb|EIE18543.1| ras-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 215
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 16/154 (10%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
+A+ ++ I+++G VGK ++++R + +F++ ++ + + +V+L
Sbjct: 8 KAASKQSMKIVLLGEGRVGKTSLMARFVHNSFKEDQQATIQAAFMSRQLQIDSQQVEVAL 67
Query: 103 WMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E F S+ L D AL +V+++ D TL+ ++HWV + + +L +G
Sbjct: 68 WDTAGQERFHSLAPLYYRDADAAL-LVYDITDRDTLERVRHWVKELRTMVGDDIVLTILG 126
Query: 160 NKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193
NK DL R R + EE++ +F QS
Sbjct: 127 NKSDLA---------RERTVPEEEAA---EFAQS 148
>gi|167396307|ref|XP_001742002.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893199|gb|EDR21539.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 194
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG +VGK I+ R F D S+ + N + T + LW E F
Sbjct: 11 VLIIGEPSVGKTAIMERYCEDKFHDELISTIGVDFNSKLVKVGDLTIKLQLWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLCIGNKVDL 164
+ ++V++++D+ + + + HWV + Q+ ++ +GNK+DL
Sbjct: 71 RNVTSSYYKGTQGCLVVYDVSDIESFNKITHWVQEYQNEQEIAFIIIVGNKIDL 124
>gi|429327071|gb|AFZ78864.1| Ras family protein [Coptotermes formosanus]
Length = 200
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IG S GK +IL RL+ F + S+ + WT + +W E F
Sbjct: 7 FIVIGHSGAGKTSILRRLVEDKFVKGTQSTVGIEFFNWTTTVEGTQVKCLIWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWV--PSIDLQKFEILLCIGNKVDLLPGHP 169
+ +++VF++ D + D+L W+ D ++L +GNK DL
Sbjct: 67 YTIAKAYFRNALGVILVFDITDRKSFDSLPKWLRDAKSDADPDCVVLLVGNKSDLAKERN 126
Query: 170 VHAEYRRRLLKR------EESSADPDFCQSGISETEG 200
V E K E S+ + D + +T G
Sbjct: 127 VSQEEAENYAKTNGLDYMETSALNSDGVREAFEKTAG 163
>gi|410960974|ref|XP_003987061.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Felis
catus]
Length = 315
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + + + + + ALV+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCVV---PNKCLVTAEVVESVQALVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C++G++
Sbjct: 104 AWLPEVMILVCDRV----------------------------CENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIIQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|67477546|ref|XP_654231.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56471261|gb|EAL48844.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790058|dbj|BAD82825.1| small GTPase EhRabC5 [Entamoeba histolytica]
Length = 203
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M++T + ILIIG S VGK IL R F + S L G +KY+T
Sbjct: 1 MEATTNTQSDYTFKILIIGESGVGKTAILERYCENIFNE-----SLLSTVGVDFKSKYFT 55
Query: 98 AD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ V LW E+F + ++ +++ D+++ D + +W+ + +K+
Sbjct: 56 IEGKRIKVQLWDTAGQEKFRNITTSYYRGTHGCIVTYDVTDINSFDKITYWLHELGNEKY 115
Query: 153 E-ILLCIGNKVD 163
+ ++ +GNK+D
Sbjct: 116 QPEIIILGNKID 127
>gi|383100637|emb|CCF17540.1| RabE GTPase protein [Micrasterias denticulata]
Length = 206
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M + R E R +L+IG S+VGK ++L R A DS S+ ++ ++ K T
Sbjct: 1 MAAGRRHGGETRLKLLLIGDSSVGKSSLLLRF-------AEDSFSQTFISTIGVDFKTRT 53
Query: 98 ADV-------SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
D+ S+W E F + +V+V+++ S+ ++++ W+ +I+
Sbjct: 54 IDIDGEQVKLSIWDTAGQERFRTITAAYYRGANGIVLVYDITSESSFNSIRGWIRNIEEH 113
Query: 151 KFEIL--LCIGNKVDL--------LPGHPVHAEYRRRLLKREESSADPD 189
E + + +GNK D+ G + E+R + E+SA D
Sbjct: 114 ASENVCKILVGNKADMEDRRVVSKEQGQALANEFRIKFF---ETSAKAD 159
>gi|407035385|gb|EKE37679.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 203
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M++T + ILIIG S VGK IL R F + S L G +KY+T
Sbjct: 1 MEATTNTQSDYTFKILIIGESGVGKTAILERYCENIFNE-----SLLSTVGVDFKSKYFT 55
Query: 98 AD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ V LW E+F + ++ +++ D+++ D + +W+ + +K+
Sbjct: 56 IEGKRIKVQLWDTAGQEKFRNITTSYYRGTHGCIVTYDVTDINSFDKITYWLHELGNEKY 115
Query: 153 E-ILLCIGNKVD 163
+ ++ +GNK+D
Sbjct: 116 QPEIIILGNKID 127
>gi|408440832|ref|NP_001258457.1| alpha- and gamma-adaptin binding protein [Gallus gallus]
Length = 314
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 52/183 (28%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD+ L + ++ + I++ + A V+ F+ + S LD + W+P +
Sbjct: 47 WTIDNKYYSADIHLCVV---PNTALVTGAIAESVQAFVVYFDSSIKSGLDGVSEWLPLTE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + N+V + G++
Sbjct: 104 EWLPEVMILVCNRV----------------------------SEHGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-DFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267
R+ EWC +H E +E + D D +S GV+R+ AL+A++W +V
Sbjct: 124 -----RQKAQEWCIKHGFELVELNPEELPDEDDDFP---ESTGVKRIVQALNANVWSNVV 175
Query: 268 LKS 270
+K+
Sbjct: 176 MKN 178
>gi|440291872|gb|ELP85114.1| hypothetical protein EIN_080860 [Entamoeba invadens IP1]
Length = 214
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+I+G ++VGK ++L R ++ +++ S+ + V + + + ++ + E+F
Sbjct: 25 IVIVGDADVGKTSLLLRYITQAYQEGVRSTIGVDVKKKIVEVQGHKVGLAFYDTAGQEKF 84
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIGNKVDLLPGHPV 170
S + TA ++V+++ L+T ++ WV I + +++ +L +GNK D+ V
Sbjct: 85 QSVSDSYFNGSTACIVVYDITRLTTFKNIEKWVAMIKNKLYDVPILFVGNKSDIEQQRDV 144
Query: 171 HAEYRRRLLKR 181
E + KR
Sbjct: 145 RLEDGENMAKR 155
>gi|307192071|gb|EFN75430.1| Alpha- and gamma-adaptin-binding protein p34 [Harpegnathos
saltator]
Length = 262
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 58/235 (24%)
Query: 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
P +LII + R I + + + +D+ L W I+ KYYT+ +S+
Sbjct: 4 PKLLIISTKEGKAREIAENIGAERLSEQNDTMDYL----WNIDNKYYTSQISV------- 52
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169
+I +L + + ++ + +D P D KVD
Sbjct: 53 -CTIENLTVKPSMEGVIALILYHD-----------PQAD------------KVD------ 82
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYI 229
E+ L+ S+ F S IS+ +R L WC +++ E +
Sbjct: 83 QELEHLTSLITLSSSAEVLLFSCSAISDML-------------LRDKVLSWCVQNKFELV 129
Query: 230 EACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKEV 284
E + D +G+ G+ER+ AL AH WP +VLK ++ E +L V E+
Sbjct: 130 ELDQTG---DSESDTEGNKYGIERIIEALQAHTWPNIVLKDKPRV-EETLEVNEI 180
>gi|346469019|gb|AEO34354.1| hypothetical protein [Amblyomma maculatum]
Length = 271
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 53/182 (29%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
W I TKYYTA V L H + ++ + L+++F+ N TLD W+
Sbjct: 45 WAIETKYYTATVYL---HTTAASVVDYDDSAENIHGLIVLFDPNQKDTLDLAARWIEK-- 99
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
C + V L+ G R +A+P G+S
Sbjct: 100 --------CPCDVVLLVCG-------------RCPPAAEP----QGLS------------ 122
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268
R+ LEWC E E IE + D ++ D+ GV+R+ AL AH WP + +
Sbjct: 123 -----RQQVLEWCIERSCELIETRPDHEDDEE------DATGVKRIVEALHAHPWPQLEM 171
Query: 269 KS 270
K+
Sbjct: 172 KA 173
>gi|154421511|ref|XP_001583769.1| Ras family protein [Trichomonas vaginalis G3]
gi|121918012|gb|EAY22783.1| Ras family protein [Trichomonas vaginalis G3]
Length = 203
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF- 111
+ IG S+VGK I++R L F+ A ++ L +T + + ++ +W E++
Sbjct: 13 VTIGDSSVGKTCIVNRFLQDKFDPAEPNTIGTLYESFTDHRDGHDLEIQIWDTAGQEQYR 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
S+ + L ALV VF++ + + D + WV E I+L +GNK+D LP
Sbjct: 73 SLGPIYYRSSLAALV-VFDITNRKSFDDINEWVSEFRSVAGENTIVLLVGNKID-LPERA 130
Query: 170 VHAE 173
V E
Sbjct: 131 VEKE 134
>gi|123374113|ref|XP_001297704.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121877975|gb|EAX84774.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 195
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS-------SELLVNGWTINTKYYTADVSLWM 104
++ +GS+ VGK +I+ + +F A +++ + VNG +N + +W
Sbjct: 11 VIFLGSAGVGKTSIIQHFMYSSFNGAYETTIGIDFFMKSIPVNGQPVN-------LQIWD 63
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKV 162
E+F + + +V+V++ +D TL+A K W S+ L IL +GNK+
Sbjct: 64 TAGQEQFKSLTPGYIREAQVVVLVYDTSDPKTLEATKDWYNSVLEILGTPPILFLVGNKI 123
Query: 163 DL 164
DL
Sbjct: 124 DL 125
>gi|344293431|ref|XP_003418426.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Loxodonta africana]
Length = 315
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L +A +F + + I++ + ALV+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCVA--PNKFLVTA-EIAECVQALVIYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++GI+
Sbjct: 104 AWLPEVMILVCDRVS----------------------------ENGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|340723572|ref|XP_003400163.1| PREDICTED: ras-related protein RabJ-like [Bombus terrestris]
Length = 220
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++GS VGK +++ R + + + + +N + + +W E F
Sbjct: 7 IVVLGSQGVGKTSMIMRYIGKTYNSQVNPTIGASFFNCKLNIQDTGIMLRVWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L +T A+K WV + ++++ +L+ IGNK DL+
Sbjct: 67 RSMAPMYYRNANAAMLVFDLTQYNTFAAMKRWVTELRRNVEETLVLVVIGNKSDLIEKRQ 126
Query: 170 VHAEYRR 176
V+AE R
Sbjct: 127 VNAEEGR 133
>gi|350426704|ref|XP_003494518.1| PREDICTED: ras-related protein RabJ-like [Bombus impatiens]
Length = 220
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+I+GS VGK +++ + + + + L +N + + +W E F
Sbjct: 7 IVILGSQGVGKTSMIMHYIGKTYNGQVNPTIGALFFNCKLNIQDTGIMLRIWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L +T A+K WV + ++++ +L IGNK DL+
Sbjct: 67 RSMAPMYYRNANAAMLVFDLTQYNTFAAMKRWVTELRRNVEEALVLAVIGNKSDLIEKRQ 126
Query: 170 VHAEYRR 176
V+AE R
Sbjct: 127 VNAEEGR 133
>gi|395502722|ref|XP_003755726.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34
[Sarcophilus harrisii]
Length = 309
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + F I + IS+ + A ++ F+ S LD++ W+P +
Sbjct: 41 WTIDNKYYSADINLCV--VPNRFLITA-EISEAVQAFIVYFDSTQKSGLDSVSSWLPLAE 97
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G+S
Sbjct: 98 AWLPEVMILVCDRV----------------------------SENGVS------------ 117
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 118 -----RPKAQEWCIQHGFELVELSPEELPEEDDDFP-------ESTGVKRIIQALNANVW 165
Query: 264 PGMVLKS 270
+V+KS
Sbjct: 166 SNVVMKS 172
>gi|291226743|ref|XP_002733350.1| PREDICTED: RASD family, member 2-like [Saccoglossus kowalevskii]
Length = 238
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
R ++++G+ VGK +I+SR L NF E ++ +L + IN D+ L A
Sbjct: 7 RYRLVVLGAGKVGKSSIISRFLHGNFAEKYRETIEDLHCREYEINGNVIKVDI-LDTAGS 65
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI----LLCIGNKVD 163
++R L IS A ++V++++D + D +K I QK L+ +GNK D
Sbjct: 66 QAFPAMRRLSIS-TAHAFLLVYSIDDSESFDEIKQVYEQIREQKSNYQDIPLILVGNKTD 124
Query: 164 LLPGHPVHAEY 174
L V EY
Sbjct: 125 LESERQVSKEY 135
>gi|401426815|ref|XP_003877891.1| putative ras-related rab-4 [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322494138|emb|CBZ29435.1| putative ras-related rab-4 [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 203
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK +L R + F D + + I+ + +W E +
Sbjct: 11 LIVIGDSGVGKSCLLHRFIEDTFSDEQTQTIGIEYGAKIIDLGGAKVKLQIWDTAGQERY 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ T ++V+++N+ S+ +++ W+ D+++ +++ IGNK+DL G
Sbjct: 71 KSVTRSYYRGATGCLIVYDVNNRSSYESVPQWLS--DVRQLAGSDVVVMLIGNKIDLAKG 128
Query: 168 HPVHA---------EYRRRLLKREESSADPDFCQSGISETEGS--SLLGDEEPSWEIRRS 216
+ V A + LL E S+A +F S SL EP E + S
Sbjct: 129 NSVRAVQHNEASLYAQQNGLLHFETSAATGEFVSEAFLRVAKSAVSLASAAEPESEAQLS 188
>gi|357445237|ref|XP_003592896.1| Ras-like protein [Medicago truncatula]
gi|92893897|gb|ABE91947.1| Ras small GTPase, Rab type [Medicago truncatula]
gi|355481944|gb|AES63147.1| Ras-like protein [Medicago truncatula]
Length = 203
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG S+VGK +L R +++D S+ + T+ + TA + +W E F
Sbjct: 12 LLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFKIRTVELEGKTAKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNKL 131
Query: 170 VH 171
VH
Sbjct: 132 VH 133
>gi|429327077|gb|AFZ78867.1| Ras-related protein [Coptotermes formosanus]
Length = 207
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
+++IG S+VGK +++ R + F S + L G TKY D V +W
Sbjct: 16 LILIGDSSVGKTSLIMRYIDDKF-----SPNNLSTIGVDFKTKYLEIDGHQVKVQVWDTA 70
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI---DLQKFEILLCIGNKVD 163
E+F + +++VF+L + T + +K W+ SI + +++LC GNKVD
Sbjct: 71 GQEQFRAITRAYYRNSNGILIVFDLTNRETFNQVKVWLQSIHDVSVDAVDVILC-GNKVD 129
Query: 164 L 164
L
Sbjct: 130 L 130
>gi|440800473|gb|ELR21511.1| Rab GTPase, putative [Acanthamoeba castellanii str. Neff]
Length = 228
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-------SSELLVNGWTINTKYYTADVSL-- 102
I+I+G S VGK I+SR + FE++S + + + V +TK V L
Sbjct: 15 IVIVGDSGVGKSNIMSRFTNDTFEESSKTTIGVAFATKNMAVETSNDSTKDCKKQVKLQV 74
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGN 160
W E + S ++V+++ +LD++ W+ ID + ++ +GN
Sbjct: 75 WDTAGQERYRALSSAYYRGAQGALVVYDITSRESLDSIPKWLEEIDKYCTQDVVVTLVGN 134
Query: 161 KVDLLPGHPVHAEYRRRLLKRE 182
K+DL V E +++ RE
Sbjct: 135 KLDLSENRCVSVEEGKKVAARE 156
>gi|145480171|ref|XP_001426108.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831490|emb|CAI39315.1| rab_C16 [Paramecium tetraurelia]
gi|124393181|emb|CAK58710.1| unnamed protein product [Paramecium tetraurelia]
Length = 332
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSS+VGK +I+ R L F S S+ + I V LW E F
Sbjct: 17 IVFLGSSSVGKTSIIKRFLKNEFAMKSMSTVGVACESKVITINNQQVKVQLWDTAGQERF 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL 164
+ A+V+V+++ ++ + + + W+ + ++ I + +GNK+DL
Sbjct: 77 RSLTKNYYRGCDAVVIVYDIQNMKSFEQVNGWIADFEDKCERPAIKMLLGNKIDL 131
>gi|410923859|ref|XP_003975399.1| PREDICTED: ras-related protein Rab-12-like [Takifugu rubripes]
Length = 242
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 43 RASLEKRPG-----ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
R + RP I+IIGS VGK +++ R F +A S+ + T+ +
Sbjct: 31 RRKIPPRPADFKLQIIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 90
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--IL 155
+ +W E F+ + +V+V+++ L + D L W+ ID E L
Sbjct: 91 IRLQIWDTAGQERFNSITSAYYRGAKGIVLVYDITKLESFDDLPKWMKMIDKYASEEAEL 150
Query: 156 LCIGNKVD 163
L +GNK+D
Sbjct: 151 LLVGNKLD 158
>gi|440790656|gb|ELR11936.1| Ras family protein [Acanthamoeba castellanii str. Neff]
Length = 228
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-------SSELLVNGWTINTKYYTADVSL-- 102
I+I+G S VGK I+SR + FE++S + + + V +TK V L
Sbjct: 15 IVIVGDSGVGKSNIMSRFTNDTFEESSKTTIGVAFATKNMAVETSNDSTKDCKKQVKLQV 74
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGN 160
W E + S ++V+++ +LD++ W+ ID + ++ +GN
Sbjct: 75 WDTAGQERYRALSSAYYRGAQGALVVYDITSRESLDSIPKWLEEIDKYCTQDVVVTLVGN 134
Query: 161 KVDLLPGHPVHAEYRRRLLKRE 182
K+DL V E +++ RE
Sbjct: 135 KLDLSENRCVSVEEGKKVAARE 156
>gi|440295244|gb|ELP88157.1| GTP-binding protein ryH1, putative [Entamoeba invadens IP1]
Length = 197
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 26/156 (16%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLS----VNFED--ASDSSSELLVNGWTINTKYYTADVS 101
K+ I+ +G S+VGK I+ R ++ N+E +D SS+ L + T T +
Sbjct: 5 KKHKIVFLGDSSVGKTCIIGRFMTSSFCTNYEATIGTDFSSKTLTDEAT----QQTVQLQ 60
Query: 102 LWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCI 158
+W E + S+ I D A V+V+++ND T D + +WV + ++ IL +
Sbjct: 61 IWDTAGQERYHSLIPSYIRDSSVA-VIVYDINDRQTFDNIDNWVEDVHSKEKGDVILFIV 119
Query: 159 GNKVDLLPGHPVHAEYRRRLLKREESSADPDF--CQ 192
GNK+DL +R + ++E+ A D+ CQ
Sbjct: 120 GNKLDL----------GKREVTQKEAIAKADYHHCQ 145
>gi|123438714|ref|XP_001310136.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736258|gb|AAX97458.1| small Rab GTPase RabA2 [Trichomonas vaginalis]
gi|121891893|gb|EAX97206.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 37/175 (21%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IGSS VGK IL RL+ F S S+ + TI+ + + +W E F
Sbjct: 7 FIVIGSSGVGKTAILKRLVDDVFTGESQSTIGVEFIATTIDVDGQSVKLQVWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL----- 164
+ +++VF+L D + + L W+ + ++ IGNK DL
Sbjct: 67 RSIAKAYFRSAIGVILVFDLTDRKSFEDLNQWLNDVHSLCDPNAVVTLIGNKSDLVGQRA 126
Query: 165 ----------------------LPGHPVH-------AE-YRRRLLKREESSADPD 189
L G V AE YRR L+K + SA PD
Sbjct: 127 ITQSEAEAFAAMHSLTYLETSALGGDNVQEAFQRTAAEVYRRSLMKGDNKSAQPD 181
>gi|348526560|ref|XP_003450787.1| PREDICTED: ras-related protein Rab-19-like [Oreochromis niloticus]
Length = 224
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG SNVGK ++ S F + ++ + T++ + + +W E F
Sbjct: 18 LVLIGDSNVGKTCVIQNFKSGIFSEKQQNTIGVDFTVRTLDIEGKKVKMQVWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ V+ +++ ST D++KHW+ ++L +L+ IGNK DL
Sbjct: 78 RTITQSYYRSAHGAVIAYDITRRSTFDSVKHWIKEVELYGAANVVLVLIGNKCDL 132
>gi|183233964|ref|XP_655812.2| Ras-likeGTP-binding protein YPT1 [Entamoeba histolytica HM-1:IMSS]
gi|169801326|gb|EAL50424.2| Ras-likeGTP-binding protein YPT1, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 239
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 32 IFGRQEMDSTDRASLEKRP-GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT 90
IF ++ D T+ +E++P IL++G VGK ++ + VN ++ D S +
Sbjct: 24 IFSTEDTD-TNIKQIEEQPFKILMVGDEGVGKTCLVRQF--VNKKNKEDGKSNICYTK-I 79
Query: 91 INTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
+N + +W ++ ++ S + A+++VF+++D +T +++K W+ +
Sbjct: 80 LNISGDNIALQIWDFESKQQDTMMSRSYYEGCNAVIVVFDISDRTTYESVKGWLKDVGYY 139
Query: 151 --KFEILLCIGNKVDLLPGHPVHAEYRRRLLKRE 182
K I +GNK DL V ++ + L KRE
Sbjct: 140 APKDIIKYLVGNKTDLAANRIVSSQEAQDLAKRE 173
>gi|19705519|ref|NP_599225.1| alpha- and gamma-adaptin-binding protein p34 [Rattus norvegicus]
gi|62286958|sp|Q9R0Z7.1|P34_RAT RecName: Full=Alpha- and gamma-adaptin-binding protein p34
gi|5802951|gb|AAD51852.1|AF178669_1 p34 [Rattus norvegicus]
gi|149041934|gb|EDL95775.1| p34 protein [Rattus norvegicus]
Length = 315
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+A+V+L + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSAEVNLCVVPSKCRVTAE---IAEAVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C+ GI+
Sbjct: 104 TWLPEVMILVCDRV----------------------------CEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E C + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQQAQEWCIKHGFELVELCPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|302855274|ref|XP_002959134.1| RabC/Rab18 [Volvox carteri f. nagariensis]
gi|549810|sp|P36862.1|YPTV3_VOLCA RecName: Full=GTP-binding protein yptV3
gi|409164|gb|AAA34252.1| GTP-binding protein [Volvox carteri]
gi|300255496|gb|EFJ39798.1| RabC/Rab18 [Volvox carteri f. nagariensis]
Length = 203
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
+L++G S VGK IL+R S FE+++ S+ G KY TAD +++W
Sbjct: 12 VLLVGDSGVGKSCILTRFTSGIFEESTTSTI-----GVDFKVKYLTADGKRCKLTIWDTA 66
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQ---KFEILLCIGNKV 162
E F + ++ V+++ T ++L+ +W+ D+ + I + + NKV
Sbjct: 67 GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126
Query: 163 DLLPGHPVHAEYRRRLLKR 181
DL V +E +R
Sbjct: 127 DLSAQRQVSSEEGHDFARR 145
>gi|224062966|ref|XP_002300952.1| predicted protein [Populus trichocarpa]
gi|222842678|gb|EEE80225.1| predicted protein [Populus trichocarpa]
Length = 211
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDS-SSELLVNGWTINTKY 95
E+ ST + E +L+IG S VGK T+L S NFED S + + V TI K
Sbjct: 2 EVPSTSQQEFEYLFKLLLIGDSGVGKSTLLLSFTSKNFEDLSPTIGVDFKVKHVTIGGK- 60
Query: 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQKFE- 153
+++W E F + ++MV+++ T L W IDL
Sbjct: 61 -KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQ 119
Query: 154 --ILLCIGNKVD 163
I + +GNKVD
Sbjct: 120 DCIKMLVGNKVD 131
>gi|159472783|ref|XP_001694524.1| small rab-related GTPase [Chlamydomonas reinhardtii]
gi|158276748|gb|EDP02519.1| small rab-related GTPase [Chlamydomonas reinhardtii]
Length = 229
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
++ +GS+ VGK ++ RL + F + D+ S + G + K Y D V++W
Sbjct: 25 VVFVGSAGVGKTCLIRRLFTDKF--SPDTQSTI---GCDFHFKRYRFDKKSVGVTIWDTA 79
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDAL-KHWVPSIDLQKF---EILLCIGNKV 162
E+F + +V V+++ TLDA+ +HW+P ++ + + +GNK+
Sbjct: 80 GAEKFQAVTSNYYRGAQGVVFVYDVTRRDTLDAIARHWLPEVERYTTYPDAVKMVVGNKI 139
Query: 163 DLLPGHPVHAE 173
D++ V E
Sbjct: 140 DMMEERAVSPE 150
>gi|167382932|ref|XP_001736335.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901506|gb|EDR27589.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 204
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK I+ RL +++ S+ + +N + T + +W E F
Sbjct: 13 ILIIGESGVGKTAIMQRLCEDTYDNVYISTVGVDFKPKILNIRNKTVKMQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLPGH 168
+ +++V+++ND+ TL+ + W + + ++ +GNK D P
Sbjct: 73 RNITASYYRNAQGVIIVYDVNDIGTLEKVDSWFNEVKERTGANPPVVFLVGNKSD-SPNP 131
Query: 169 PVHAEYRRRLLKR 181
V E + ++ +
Sbjct: 132 TVSKEMVKNVVNK 144
>gi|261205984|ref|XP_002627729.1| GTP-binding protein ypt5 [Ajellomyces dermatitidis SLH14081]
gi|239592788|gb|EEQ75369.1| GTP-binding protein ypt5 [Ajellomyces dermatitidis SLH14081]
gi|327350703|gb|EGE79560.1| Ypt5 protein [Ajellomyces dermatitidis ATCC 18188]
Length = 217
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 43 RASLEKRPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TK 94
RA++ RPG ++++G S VGK +++ R + F+D +S+ TI+ +
Sbjct: 4 RAAVGGRPGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDE 63
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E + + V+V+++ S+LD K WV + Q E
Sbjct: 64 NTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANEN 123
Query: 154 -ILLCIGNKVDLLPGHP 169
++ GNK+DL+ P
Sbjct: 124 IVIALAGNKLDLVTDSP 140
>gi|422295322|gb|EKU22621.1| rab18 -family small gtpase, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG + VGK +IL R F+D S+ + I + +++W E F
Sbjct: 52 LLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERF 111
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNK--VDLLPGHP 169
+ +++V+++N + + L HW LQ+ E+ G + V +L G+
Sbjct: 112 RTLTSSYYRGAQGIILVYDVNRRESFENLNHW-----LQEVEVYSTGGGREIVKVLVGNK 166
Query: 170 VHAEYRRRLLKREESSA 186
V E R++ REE+ A
Sbjct: 167 VDKE---RMVPREEAEA 180
>gi|47223036|emb|CAG07123.1| unnamed protein product [Tetraodon nigroviridis]
Length = 244
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 43 RASLEKRPG-----ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
R + RP I+IIGS VGK +++ R F +A S+ + T+ +
Sbjct: 31 RRKMPPRPADFKLQIIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 90
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--IL 155
+ +W E F+ + +V+V+++ L + D L W+ ID E L
Sbjct: 91 IRLQIWDTAGQERFNSITSAYYRGAKGIVLVYDITKLESFDDLPKWMKMIDKYASEEAEL 150
Query: 156 LCIGNKVD 163
L +GNK+D
Sbjct: 151 LLVGNKLD 158
>gi|444721651|gb|ELW62375.1| Alpha- and gamma-adaptin-binding protein p34, partial [Tupaia
chinensis]
Length = 206
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 22 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 78
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V+ ++G+S
Sbjct: 79 AWLPEVMILVCDRVN----------------------------ENGVS------------ 98
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 99 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 146
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 147 SNVVMKN 153
>gi|417409378|gb|JAA51198.1| Putative alpha- and gamma-adaptin-binding protein p34, partial
[Desmodus rotundus]
Length = 290
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD + W+P +
Sbjct: 22 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTQKSGLDGVSSWLPLAE 78
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G++
Sbjct: 79 AWLAEVMILVCDRV----------------------------SENGVN------------ 98
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 99 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 146
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 147 SNVVMKN 153
>gi|156555777|ref|XP_001602999.1| PREDICTED: ras-related protein Rab-18-B-like [Nasonia vitripennis]
Length = 223
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG +NVGK +IL R F D ++ + + T +++W E F
Sbjct: 12 ILMIGETNVGKSSILLRFTEDEFHDNIQNTVGMDYKSKKVTIDGNTVKLAIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL--QKFEIL-LCIGNKVDLLPGH 168
+ ++V+++ D ST L W+ + K +I+ + +GNK+D LP
Sbjct: 72 RTLTPNYYRDGQGAILVYDVTDRSTFTKLDMWLNELHTYCNKTDIVKMVVGNKID-LPDR 130
Query: 169 PVHAEYRRRLLKREES 184
V E + +R ++
Sbjct: 131 QVTTEEGLQFARRHQT 146
>gi|47222068|emb|CAG12094.1| unnamed protein product [Tetraodon nigroviridis]
Length = 251
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK ++ S F ++ + + T+ + + +W E F
Sbjct: 18 IILIGDSNVGKTCVVQNFKSGTFSAKQQNTIGVDFSVRTVEIEGKKVKIQVWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++ +++ +T D++ HW+ ++L +L+ IGNK DL
Sbjct: 78 RTITQSYYRSAHGAIIAYDITRHATFDSVSHWIKEVELYGASNVVLVLIGNKCDLEQERE 137
Query: 170 VHAEYRRRLLKREE 183
V E L K +E
Sbjct: 138 VTFEDACNLAKNKE 151
>gi|167384556|ref|XP_001737005.1| GTP-binding protein YPTM2 [Entamoeba dispar SAW760]
gi|165900423|gb|EDR26744.1| GTP-binding protein YPTM2, putative [Entamoeba dispar SAW760]
Length = 206
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK IL R F D S+ + IN + T + LW E F
Sbjct: 17 ILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIINYQGKTVKLQLWDTAGQERF 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVD 163
+ ++V+++ D+++ + + +W+ ++ K EIL+ +GNK+D
Sbjct: 77 RNITSSYYRGTHGCLIVYDVTDITSFEKITYWINELNDCSTKPEILV-VGNKID 129
>gi|254567311|ref|XP_002490766.1| GTP-binding protein YPT10 [Komagataella pastoris GS115]
gi|12381854|emb|CAC24719.1| Ypt-like protein [Komagataella pastoris]
gi|238030562|emb|CAY68486.1| GTP-binding protein YPT10 [Komagataella pastoris GS115]
Length = 216
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD---- 99
AS E I+++G S VGK ++++R S +A D+ E + I KYY D
Sbjct: 20 ASKEADLKIVLLGESAVGKSSLVTRFAS----NAFDADKESTIGAAFIVKKYYVTDPETN 75
Query: 100 ------VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---- 149
+W E + + + ++VF+L D+S+L + W+ ++
Sbjct: 76 EVKLINFQIWDTAGQERYQSLAPMYYRNASVAIIVFDLTDISSLTKAEFWIAELEAYNRE 135
Query: 150 -QKFEILLCIGNKVDL 164
K +ILL +GNK DL
Sbjct: 136 EHKIQILL-VGNKSDL 150
>gi|56790170|dbj|BAD82881.1| small GTPase EhRabX33 [Entamoeba histolytica]
Length = 210
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 32 IFGRQEMDSTDRASLEKRP-GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT 90
IF ++ D T+ +E++P IL++G VGK ++ + VN ++ D S +
Sbjct: 7 IFSTEDTD-TNIKQIEEQPFKILMVGDEGVGKTCLVRQF--VNKKNKEDGKSNICYTK-I 62
Query: 91 INTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
+N + +W ++ ++ S + A+++VF+++D +T +++K W+ +
Sbjct: 63 LNISGDNIALQIWDFESKQQDTMMSRSYYEGCNAVIVVFDISDRTTYESVKGWLKDVGYY 122
Query: 151 --KFEILLCIGNKVDLLPGHPVHAEYRRRLLKRE 182
K I +GNK DL V ++ + L KRE
Sbjct: 123 APKDIIKYLVGNKTDLAANRIVSSQEAQDLAKRE 156
>gi|449704708|gb|EMD44898.1| small GTP -binding protein rab1a, putative [Entamoeba histolytica
KU27]
Length = 227
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 32 IFGRQEMDSTDRASLEKRP-GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT 90
IF ++ D T+ +E++P IL++G VGK ++ + VN ++ D S +
Sbjct: 24 IFSTEDTD-TNIKQIEEQPFKILMVGDEGVGKTCLVRQF--VNKKNKEDGKSNICYTK-I 79
Query: 91 INTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
+N + +W ++ ++ S + A+++VF+++D +T +++K W+ +
Sbjct: 80 LNISGDNIALQIWDFESKQQDTMMSRSYYEGCNAVIVVFDISDRTTYESVKGWLKDVGYY 139
Query: 151 --KFEILLCIGNKVDLLPGHPVHAEYRRRLLKRE 182
K I +GNK DL V ++ + L KRE
Sbjct: 140 APKDIIKYLVGNKTDLAANRIVSSQEAQDLAKRE 173
>gi|119180268|ref|XP_001241623.1| ras-related protein [Coccidioides immitis RS]
gi|303321211|ref|XP_003070600.1| Ras-related protein ypt5, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110296|gb|EER28455.1| Ras-related protein ypt5, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035923|gb|EFW17863.1| GTP-binding protein ypt5 [Coccidioides posadasii str. Silveira]
gi|392866497|gb|EJB11129.1| GTP-binding protein ypt5 [Coccidioides immitis RS]
Length = 217
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 43 RASLEKRPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TK 94
RA + RPG ++++G S VGK +++ R + F+D +S+ TI+ +
Sbjct: 4 RAPVGGRPGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDE 63
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E + + V+V+++ S+LD K WV + Q E
Sbjct: 64 NTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANEN 123
Query: 154 -ILLCIGNKVDLLPGHP 169
I+ GNK+DL+ P
Sbjct: 124 IIIALAGNKLDLVTDSP 140
>gi|335280121|ref|XP_003121791.2| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like [Sus
scrofa]
Length = 315
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F I + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLITA-EIAESVQAFVVYFDSTQTSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G++
Sbjct: 104 AWLPEVMILVCDRVS----------------------------ENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S G++R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELNPEELPEEDDDFP-------ESTGIKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|255585255|ref|XP_002533328.1| protein with unknown function [Ricinus communis]
gi|223526833|gb|EEF29049.1| protein with unknown function [Ricinus communis]
Length = 231
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 36 QEMDSTDRASLEKRP----GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI 91
QEM+ D+ +L+++ +++IG S VGK +LSR F S S+ + T+
Sbjct: 3 QEMNGDDQENLQEKIDYVFKVVVIGDSAVGKTQLLSRFTKNEFCFDSKSTIGVEFQTRTV 62
Query: 92 NTKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
K +W E + ++ S L A+ +V+++ +T D + WV +
Sbjct: 63 TIKGKVVKAQIWDTAGQERYRAVTSAYYRGALGAM-LVYDITKRATFDHVARWVEELRAH 121
Query: 151 KFE--ILLCIGNKVDLLPGHPVHAE 173
++ IGNK DL+ V E
Sbjct: 122 ADNSIVITLIGNKADLVDQRAVPTE 146
>gi|397494200|ref|XP_003817973.1| PREDICTED: ras-related protein Rab-12 [Pan paniscus]
Length = 258
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 40 STDRASLEKRPG-----ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK 94
S+ R RP ++IIGS VGK +++ R F +A S+ + T+ +
Sbjct: 42 SSRRQGAPTRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR 101
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ +W E F+ + +++V+++ T D L W+ ID E
Sbjct: 102 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED 161
Query: 154 -ILLCIGNKVD 163
LL +GNK+D
Sbjct: 162 AELLLVGNKLD 172
>gi|242089159|ref|XP_002440412.1| hypothetical protein SORBIDRAFT_09g000550 [Sorghum bicolor]
gi|241945697|gb|EES18842.1| hypothetical protein SORBIDRAFT_09g000550 [Sorghum bicolor]
Length = 205
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R +F D S+ + T++ T + +W E F
Sbjct: 13 LLLIGDSSVGKSCLLLRFADDSFVDTYISTIGVDFKIRTVDLDGKTVKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL+
Sbjct: 73 RTITSSYYRGAHGIIIVYDVTDMESFNNIKQWLSEIDRYASDNVCKLLVGNKCDLVDSKV 132
Query: 170 VHAE 173
V E
Sbjct: 133 VETE 136
>gi|384493359|gb|EIE83850.1| hypothetical protein RO3G_08555 [Rhizopus delemar RA 99-880]
Length = 238
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 38 MDST--DRASLEKR-----PG------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSEL 84
MDST + ASL+ PG ++++G S VGK +I R ++ + + + +
Sbjct: 1 MDSTIENNASLDATTTSAIPGKMKHVKLVLLGESAVGKSSIALRFVNRQYIENREPTIGA 60
Query: 85 LVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV 144
N K +W E F + A ++V+++ + STLD K WV
Sbjct: 61 AFLTQKCNLKDRCIKFEIWDTAGQERFHSLAPMYYRNAQAAIVVYDITNASTLDKAKSWV 120
Query: 145 PSIDLQKFE--ILLCIGNKVDLLPGH---PVHAEYRRRLLKREESSADPD 189
+ Q ++ +GNK+DL+ G P++ E R + +E++ A D
Sbjct: 121 KELQRQANTDIVIALVGNKLDLVEGQDGEPLNDEEHERKVLKEDAQAYAD 170
>gi|225707952|gb|ACO09822.1| Alpha- and gamma-adaptin-binding protein p34 [Osmerus mordax]
Length = 321
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 50/181 (27%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTIN KYYTADVSL + F + S I+ + A + F+ LD L WV ++
Sbjct: 54 WTINNKYYTADVSL--CAVPSTFQMTS-EIAQSMQAFIAYFDSTVKDGLDRLSPWVSVVE 110
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+L+ + ++V C+S ++
Sbjct: 111 DLAPEVLILVCDRV----------------------------CESSVT------------ 130
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268
R +WC H E +E + +D +S GV+R+ AL+A++W + +
Sbjct: 131 -----RHEAQQWCLGHAFELVE--LNPLDLPDEDDDFPESTGVKRIVQALNANVWSSVEM 183
Query: 269 K 269
K
Sbjct: 184 K 184
>gi|195995911|ref|XP_002107824.1| hypothetical protein TRIADDRAFT_6445 [Trichoplax adhaerens]
gi|190588600|gb|EDV28622.1| hypothetical protein TRIADDRAFT_6445, partial [Trichoplax
adhaerens]
Length = 168
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS-------SELLVNGWTINTKYYTADVSLWM 104
I+ +G S VGK + + + F + ++ L++NG I + LW
Sbjct: 3 IVFVGDSGVGKSSFVQCFCTDQFNSSYSATIAIDFQVKNLIINGMEIM-------LQLWD 55
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDL 164
HE F + + +VMV++L++ + +L+ W+ S++++ + ++ IGNK DL
Sbjct: 56 TAGHERFRSLTKSYFRKADGIVMVYDLSNPLSYASLREWMFSVEVRNYATVMIIGNKADL 115
>gi|395822390|ref|XP_003784501.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Otolemur
garnettii]
Length = 315
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G++
Sbjct: 104 AWLPEVMILVCDRV----------------------------SENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIIQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|123447459|ref|XP_001312469.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121894317|gb|EAX99539.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 199
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G S+VGK +IL+RL+ F ++ S+ + ++ T ++ LW E++
Sbjct: 12 VVLVGDSSVGKTSILNRLILDKFNNSEQSTVGANYHIYSQEVDGKTIEIQLWDTAGQEKY 71
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLCI-GNKVDL 164
S+ + + ALV VF+L T D L W+ S D+ + ++CI NK DL
Sbjct: 72 RSLGPIYFRNSAGALV-VFDLTAKETFDNLNSWIDSFTDVAGSDTVICIAANKCDL 126
>gi|294949450|ref|XP_002786203.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239900360|gb|EER17999.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 205
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +KHWV ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDRESFNNVKHWVQEIDKYATENVSKLLVGNKTDL 125
>gi|407038794|gb|EKE39311.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 204
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK I+ RL +++ S+ + +N + T + +W E F
Sbjct: 13 ILIIGESGVGKTAIMQRLCEDTYDNVYISTVGVDFKPKILNIRNKTVKMQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVD 163
+ +++V+++ND+ TL+ + W + + ++ +GNK D
Sbjct: 73 RNITASYYRNAQGVIIVYDVNDIGTLEKVDSWFNEVKERTGANPPVVFLVGNKSD 127
>gi|158343285|gb|ABW35315.1| Rab1A1 [Gymnochlora stellata]
gi|193875838|gb|ACF24555.1| Ras-related small GTPase Rab 1a [Gymnochlora stellata]
Length = 207
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK +L R +F D+ S+ + T+ T + +W E F
Sbjct: 19 LVLIGDSGVGKSCLLLRFADDSFTDSYISTIGVDFRFRTLKINKKTVKLQIWDTAGQERF 78
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++MV+++ L + + + W+ +D E L +GNK DL
Sbjct: 79 RTITSAYYRGADGIIMVYDVTSLESFEHVDEWLNEVDRFAHENTCKLLVGNKADLTDDRK 138
Query: 170 VHAEYRRRLLKR 181
V E R L +R
Sbjct: 139 VSEESARALAQR 150
>gi|50082737|gb|AAT70063.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGAGKTSIVSRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L + W P
Sbjct: 55 QIDLKNVKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLKWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DLL G + E
Sbjct: 114 IPEGCVKILC--GNKLDLLNGRAITTE 138
>gi|67482011|ref|XP_656355.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|13537431|dbj|BAB40670.1| small GTPase RabC1 [Entamoeba histolytica]
gi|56473553|gb|EAL50972.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449704632|gb|EMD44839.1| small GTPase RabC1, putative [Entamoeba histolytica KU27]
Length = 204
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK I+ RL +++ S+ + +N + T + +W E F
Sbjct: 13 ILIIGESGVGKTAIMQRLCEDTYDNVYISTVGVDFKPKILNIRNKTVKMQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVD 163
+ +++V+++ND+ TL+ + W + + ++ +GNK D
Sbjct: 73 RNITASYYRNAQGVIIVYDVNDIGTLEKVDSWFNEVKERTGANPPVVFLVGNKSD 127
>gi|304606|gb|AAC37384.1| RabC [Dictyostelium discoideum]
gi|739978|prf||2004272E rabC gene
Length = 196
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY--YTADVSLWMAHLHE 109
I+++G S VGK +IL R F + + N TI K T + LW E
Sbjct: 9 IILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPG 167
F + +++V+++ D + + LK+WV I+ Q I++ +GNK D++
Sbjct: 69 RFKSITQTFYRGSHGVIVVYDVTDPKSFERLKNWVEDINQYTQDGMIIILVGNKSDMVAQ 128
Query: 168 HPVHAEYRRRLLKR 181
V E + + ++
Sbjct: 129 RKVTFEQGQEMAEQ 142
>gi|410918967|ref|XP_003972956.1| PREDICTED: ras-related protein Rab-19-like [Takifugu rubripes]
Length = 224
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK ++ S F + ++ + + T+ + + +W E F
Sbjct: 18 IILIGDSNVGKTCVVQNFKSGTFSEKQQNTIGVDFSVRTVEIEGKKVKIQVWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ V+ +++ +T D++ HW+ ++L L+ IGNK DL
Sbjct: 78 RTITQSYYRSAHGAVIAYDITRHATFDSVSHWISEVELYGASNVTLVLIGNKCDL 132
>gi|428182225|gb|EKX51086.1| hypothetical protein GUITHDRAFT_85102 [Guillardia theta CCMP2712]
Length = 215
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G VGK +++ R ++ F D ++ + IN T ++++W E F
Sbjct: 12 IVLLGEGRVGKTSLVLRYVNNTFSDKQQTTIQASFLSKRINIGENTCNLAIWDTAGQERF 71
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF---EILLCI-GNKVDL 164
++ + D AL +V++ D + +K+WV +L+K EI+LCI GNK+DL
Sbjct: 72 HALGPIYYRDADGAL-LVYDTTDTESFAKVKNWVK--ELRKMVGQEIVLCIAGNKIDL 126
>gi|302848283|ref|XP_002955674.1| RabC/Rab18 [Volvox carteri f. nagariensis]
gi|300259083|gb|EFJ43314.1| RabC/Rab18 [Volvox carteri f. nagariensis]
Length = 232
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
++ +GS+ VGK ++ RL + F + + G K Y D V+LW
Sbjct: 23 VVFVGSAGVGKTCLIRRLFTDKFSQETQPTI-----GCDFQFKRYKFDNKSVGVTLWDTA 77
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDAL-KHWVPSIDLQ---KFEILLCIGNKV 162
E F + +V V+++ TLD+L +HW+P + I + +GNK+
Sbjct: 78 GAERFQAVTANYYRGAQGIVFVYDVTRRDTLDSLGQHWLPEVSRHCTFPEAIKMVVGNKI 137
Query: 163 DLLPGHPVHAE 173
D++ V E
Sbjct: 138 DMVDARVVAPE 148
>gi|167382002|ref|XP_001735936.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901842|gb|EDR27829.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 203
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M++T + ILIIG S VGK IL R F + S L G +KY+T
Sbjct: 1 MEATINTQSDYTFKILIIGESGVGKTAILERYCENIFNE-----SLLSTVGVDFKSKYFT 55
Query: 98 AD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ V LW E+F + ++ +++ DL++ + + +W+ + +K+
Sbjct: 56 IEGKKIKVQLWDTAGQEKFRNITTSYYRGTHGCIITYDVTDLNSFEKITYWLHELGNEKY 115
Query: 153 E-ILLCIGNKVD 163
+ ++ +GNK+D
Sbjct: 116 QPEIIILGNKID 127
>gi|67473169|ref|XP_652352.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56469191|gb|EAL46966.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790054|dbj|BAD82823.1| small GTPase EhRabC3 [Entamoeba histolytica]
gi|407043332|gb|EKE41887.1| Rab family GTPase [Entamoeba nuttalli P19]
gi|449702822|gb|EMD43384.1| small GTPase EhRabC3, putative [Entamoeba histolytica KU27]
Length = 208
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK I+ R FE S+ + I T + LW + F
Sbjct: 12 ILIIGESGVGKTAIMQRFCENTFEPVYISTVGVDFKPKVIKVGNKTVKMQLWDTAGQDRF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFE--ILLCIGNKVDLLPGH 168
+ +++V+++ D ++ D + W + D + + +++ +GNK DL+
Sbjct: 72 RNITASYYRGTQGVLIVYDVTDRASFDKVSSWFTEVRDRTENDPPVIILVGNKTDLMDHA 131
Query: 169 PVHAEYRRRLLKR 181
V E +L ++
Sbjct: 132 AVKQEAVEQLARQ 144
>gi|328351151|emb|CCA37551.1| Ras-related protein Rab-1A [Komagataella pastoris CBS 7435]
Length = 178
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD---- 99
AS E I+++G S VGK ++++R S +A D+ E + I KYY D
Sbjct: 20 ASKEADLKIVLLGESAVGKSSLVTRFAS----NAFDADKESTIGAAFIVKKYYVTDPETN 75
Query: 100 ------VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---- 149
+W E + + + ++VF+L D+S+L + W+ ++
Sbjct: 76 EVKLINFQIWDTAGQERYQSLAPMYYRNASVAIIVFDLTDISSLTKAEFWIAELEAYNRE 135
Query: 150 -QKFEILLCIGNKVDL 164
K +ILL +GNK DL
Sbjct: 136 EHKIQILL-VGNKSDL 150
>gi|167393508|ref|XP_001740606.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165895241|gb|EDR22979.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 208
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK I+ R FE S+ + I T + LW + F
Sbjct: 12 ILIIGESGVGKTAIMQRFCENTFEPVYISTVGVDFKPKVIKVGNKTVKMQLWDTAGQDRF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFE--ILLCIGNKVDLLPGH 168
+ +++V+++ D ++ D + W + D + + +++ +GNK DL+
Sbjct: 72 RNITASYYRGTQGVLIVYDVTDRASFDKVSSWFTEVRDRTENDPPVIILVGNKTDLMDHA 131
Query: 169 PVHAEYRRRLLKR 181
V E +L ++
Sbjct: 132 AVKQEAVEQLARQ 144
>gi|405957516|gb|EKC23721.1| hypothetical protein CGI_10016697 [Crassostrea gigas]
Length = 236
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAH 106
E R I+ +G+ VGK +IL R L+ + D + + E L Y A+ + H
Sbjct: 5 EHRNRIVFLGAGGVGKTSILKRFLNGEYSDTYEETVEDL----------YPAEYDVRDTH 54
Query: 107 LHEEF----------SIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQ-KFEI 154
L +F ++R L I++ A V+VF++ D+ST + +K W +++ +E
Sbjct: 55 LLVDFLDTAGNIAFPAMRRLSIANA-QAFVLVFSITDISTFEEVKQLWEQIKEVRTTYET 113
Query: 155 LLC--IGNKVDL 164
+ C +GNK+DL
Sbjct: 114 IPCVIVGNKLDL 125
>gi|383857603|ref|XP_003704294.1| PREDICTED: ras-related protein RabJ-like [Megachile rotundata]
Length = 217
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +GS VGK +++ R + F + D + +N + + +W E F
Sbjct: 8 VVALGSQGVGKTSMIIRYVGKAFNEHVDPTIGASFFTCKLNVENVKIMLQVWDTAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L +T A+K WV + +++ +L IGNK DL+
Sbjct: 68 RSMAPMYYRNANAAMLVFDLTQYNTFAAMKGWVTELRRNVEDAMVLAVIGNKSDLIKERQ 127
Query: 170 VHAEYRR 176
V AE R
Sbjct: 128 VDAEEGR 134
>gi|123471281|ref|XP_001318841.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121901610|gb|EAY06618.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 192
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G ++VGK +++ R F S+ + + T + A +++W E +
Sbjct: 12 IIFVGDASVGKTSVIMRYQHNLFTSEFQSTVGVAFVTKQVTTSFGAATLNIWDTAGQERY 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPGH 168
S TA V+VF++ND + +L W+ + L L +GNK+DL P +
Sbjct: 72 KSLVPMYSRSATAAVIVFDVNDDQSFKSLPQWLEQLKQGLPANCTLFLVGNKIDLQPDY 130
>gi|403276088|ref|XP_003929747.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Saimiri
boliviensis boliviensis]
Length = 315
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F I + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLITA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + G++
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|322803217|gb|EFZ23238.1| hypothetical protein SINV_08216 [Solenopsis invicta]
Length = 224
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
MD D ++ K IL+IG SNVGK +IL R F + S+ + +N
Sbjct: 3 MDQEDILTILK---ILMIGESNVGKSSILLRFTEDEFYENMQSTVGMDYKTKQVNIDGNV 59
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL 155
+++W E F + ++++++ D +T L+ W+ ++ K +I+
Sbjct: 60 VKLAIWDTAGQERFRTLTPSYYRDGQGAILMYDVTDRNTFVKLETWLNELNTYCNKTDIV 119
Query: 156 -LCIGNKVDLLPGHPVHAEYRRRLLKREES 184
+ +GNK+D LP V E + +R ++
Sbjct: 120 KMVVGNKID-LPNREVSTEDGLQFARRHQT 148
>gi|307189424|gb|EFN73834.1| Ras-related protein Rab-18 [Camponotus floridanus]
Length = 224
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
MD D ++ K ILIIG SNVGK +IL R F + S+ + I T
Sbjct: 1 MDQEDVLTILK---ILIIGESNVGKSSILLRFTEDEFCENMQSTVGMDYKTKQITIDGNT 57
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL 155
+++W E F + ++++++ D +T L+ W+ ++ + +I+
Sbjct: 58 VKLAIWDTAGQERFRTLTPSYYRDGQGAILMYDVTDRNTFVKLETWLNELNTYCNRTDIV 117
Query: 156 -LCIGNKVDLLPGHPVHAEYRRRLLKREES 184
+ +GNK+D LP V E + +R ++
Sbjct: 118 KMVVGNKID-LPNREVSTEEGLQFARRHQT 146
>gi|296213536|ref|XP_002753314.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Callithrix
jacchus]
Length = 315
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|399163161|gb|AFP33156.1| rab-21, partial [Caenorhabditis elegans]
Length = 206
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G VGK +++ R + F S+ + T+N + AD+ +W E++
Sbjct: 14 IVLLGEGCVGKSSLVLRFVENKFSCKHLSTIQASFQNKTVNVEDCQADLHIWDTAGQEKY 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD-LLPGHPV 170
+++VF++ D + + +K+WV EI C+GN + L+ G+ +
Sbjct: 74 HALGPIYYRGSNGVLLVFDITDRKSFEKVKNWV-------LEIKTCLGNTAEILIVGNKI 126
Query: 171 HAEYRRRLLKRE 182
E R++ +++
Sbjct: 127 DLEEERQVTRQD 138
>gi|197100737|ref|NP_001124785.1| alpha- and gamma-adaptin-binding protein p34 [Pongo abelii]
gi|62286971|sp|Q5RET3.1|P34_PONAB RecName: Full=Alpha- and gamma-adaptin-binding protein p34
gi|55725889|emb|CAH89724.1| hypothetical protein [Pongo abelii]
Length = 315
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDGTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|268575806|ref|XP_002642883.1| C. briggsae CBR-RAB-18 protein [Caenorhabditis briggsae]
gi|74765201|sp|P90726.1|RAB18_CAEBR RecName: Full=Ras-related protein Rab-18
gi|1710360|gb|AAB38279.1| membrane associated GTP binding protein RAB18 [Caenorhabditis
briggsae]
Length = 202
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILIIG S VGK +++ R + F E A+ + V TI+ +++W E
Sbjct: 14 ILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNR--VKLAIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLP 166
F + ++ V+++ S+ + LKHW+ +D I + + NK+D +P
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNVIKMMVANKID-MP 130
Query: 167 GHPVHAEYRRRLLKREES 184
V E + KR +
Sbjct: 131 NRTVTREEGLKFAKRHRT 148
>gi|17535871|ref|NP_495854.1| Protein RAB-21 [Caenorhabditis elegans]
gi|3879231|emb|CAA91296.1| Protein RAB-21 [Caenorhabditis elegans]
Length = 207
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G VGK +++ R + F S+ + T+N + AD+ +W E++
Sbjct: 15 IVLLGEGCVGKSSLVLRFVENKFSCKHLSTIQASFQNKTVNVEDCQADLHIWDTAGQEKY 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD-LLPGHPV 170
+++VF++ D + + +K+WV EI C+GN + L+ G+ +
Sbjct: 75 HALGPIYYRGSNGVLLVFDITDRKSFEKVKNWV-------LEIKTCLGNTAEILIVGNKI 127
Query: 171 HAEYRRRLLKRE 182
E R++ +++
Sbjct: 128 DLEEERQVTRQD 139
>gi|440298637|gb|ELP91268.1| GTP-binding protein YPTM1, putative [Entamoeba invadens IP1]
Length = 207
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK I+ R FE S+ + I T + LW + F
Sbjct: 12 ILIIGESGVGKTAIMQRFCENTFEPVYISTVGVDFKPKVIKVGNKTVKMQLWDTAGQDRF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFE--ILLCIGNKVDLLPGH 168
+ +++V+++ D ++ D + W + D + + +++ +GNK DL+
Sbjct: 72 RNITASYYRGTQGVLIVYDITDRASFDKVSSWFTEVRDRTENDPPVIILVGNKTDLMDHA 131
Query: 169 PVHAEYRRRLLKR 181
V E +L ++
Sbjct: 132 AVKQEAVEQLARQ 144
>gi|154420093|ref|XP_001583062.1| Ras family protein [Trichomonas vaginalis G3]
gi|121917301|gb|EAY22076.1| Ras family protein [Trichomonas vaginalis G3]
Length = 200
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF---EDASDSSSELLVNGWTINTK 94
D + A +E + ++++G VGK +I++R S +F E + ++S L + +N
Sbjct: 7 FDIENSADMEFK--VVLVGDGYVGKTSIINRFYSDHFSTNEPPTIAASFLPI---AMNKN 61
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI 154
+++W HE+F + L++VF+L + T + K W L +I
Sbjct: 62 GKRVVLNIWDTAGHEKFHCLVPLYARAANTLIVVFDLTNEMTFENAKEWYTKTILDVGQI 121
Query: 155 LLCI--GNKVDLLP 166
+CI GNK+DL+P
Sbjct: 122 PVCILCGNKLDLMP 135
>gi|296473716|tpg|DAA15831.1| TPA: RAB12, member RAS oncogene family [Bos taurus]
Length = 168
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 45 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 104
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 105 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 158
>gi|145547491|ref|XP_001459427.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427252|emb|CAK92030.1| unnamed protein product [Paramecium tetraurelia]
Length = 328
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSS+VGK +I+ R L F S S+ + I V LW E +
Sbjct: 19 IVFLGSSSVGKSSIIKRFLKNEFAMKSMSTVGVACESKVITIHNQQVKVQLWDTAGQERY 78
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL 164
+ A+V+V+++ ++ + +K W+ + ++ I + +GNK+DL
Sbjct: 79 RSLTKNYYRNCDAVVIVYDIANMKSFYQVKGWIADFEDKCERPAIKMLLGNKIDL 133
>gi|67475925|ref|XP_653593.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|50978620|dbj|BAD34977.1| EhRabC2 protein [Entamoeba histolytica]
gi|56470561|gb|EAL48205.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449705539|gb|EMD45563.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 206
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK IL R F D S+ + IN + T + LW E F
Sbjct: 17 ILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIINYQGKTVKLQLWDTAGQERF 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVD 163
+ ++V+++ D+++ + + +W+ ++ K EIL+ +GNK+D
Sbjct: 77 RNITSSYYRGTHGCLIVYDVTDITSFEKITYWINELNDCSIKPEILV-VGNKID 129
>gi|440298405|gb|ELP91041.1| hypothetical protein EIN_267670 [Entamoeba invadens IP1]
Length = 196
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYYTADVS 101
+A++E + + I+G S+VGK +I + + +F E +E +T K +VS
Sbjct: 4 KAAIEIK--LAIVGESSVGKTSICNVMSKGSFIETTPTVGAEFYKFKYTFKDK----EVS 57
Query: 102 LWMAHLHEEFSIRSLPIS--DQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLCI 158
+ + E S+P S + + +++V++++ T L +WV SI D + ++C+
Sbjct: 58 ISLFDTSGEERFHSVPTSYYHKASGVIVVYDVSKEDTFTKLDYWVTSIKDNSDVKAIICV 117
Query: 159 GNKVDLLPGHPVHAEYRRRLLK 180
GNK DL H V +E ++ +
Sbjct: 118 GNKTDL--EHKVKSEIAKQYAQ 137
>gi|378725883|gb|EHY52342.1| GTP-binding protein ypt5 [Exophiala dermatitidis NIH/UT8656]
Length = 219
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 49 RPG---------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTA 98
RPG ++++G S VGK +++ R + F+D +S+ TI+ + T
Sbjct: 9 RPGAGGRFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDENTTV 68
Query: 99 DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILL 156
+W E + + V+V+++ S+LD K WV + Q E ++
Sbjct: 69 KFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVIA 128
Query: 157 CIGNKVDLLPGHP 169
GNK+DL+ HP
Sbjct: 129 LAGNKLDLVNEHP 141
>gi|407044609|gb|EKE42710.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 206
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK IL R F D S+ + IN + T + LW E F
Sbjct: 17 ILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIINYQGKTVKLQLWDTAGQERF 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVD 163
+ ++V+++ D+++ + + +W+ ++ K EIL+ +GNK+D
Sbjct: 77 RNITSSYYRGTHGCLIVYDVTDITSFEKITYWINELNDCSIKPEILV-VGNKID 129
>gi|74831366|emb|CAI39290.1| rab_C88 [Paramecium tetraurelia]
Length = 334
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSS+VGK +I+ R L F S S+ + I V LW E +
Sbjct: 25 IVFLGSSSVGKSSIIKRFLKNEFAMKSMSTVGVACESKVITIHNQQVKVQLWDTAGQERY 84
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL 164
+ A+V+V+++ ++ + +K W+ + ++ I + +GNK+DL
Sbjct: 85 RSLTKNYYRNCDAVVIVYDIANMKSFYQVKGWIADFEDKCERPAIKMLLGNKIDL 139
>gi|387594435|gb|EIJ89459.1| small GTP binding protein RAB8 [Nematocida parisii ERTm3]
gi|387596723|gb|EIJ94344.1| small GTP binding protein RAB8 [Nematocida parisii ERTm1]
Length = 207
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG SNVGK +IL R + FE ++ + IN ++ +W E F
Sbjct: 10 LLIIGESNVGKTSILQRFIEDKFEKTFSTTIGIDFRSKNININGKEIELQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVDLLPGHP 169
+ + + F+L + +L W+ I + E + +GNK DLL G
Sbjct: 70 FSITRSYYRGSDGIFLTFDLTSEGSFASLSKWINEIKEKVNENVPVFLLGNKKDLLKGKE 129
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203
+ K +E S + G S G ++
Sbjct: 130 FETTEISTIKKIKEISEELKVPWYGTSAKSGENI 163
>gi|169856754|ref|XP_001835031.1| small monomeric GTPase [Coprinopsis cinerea okayama7#130]
gi|116503902|gb|EAU86797.1| small monomeric GTPase [Coprinopsis cinerea okayama7#130]
Length = 218
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 34 GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TI 91
G+Q ++ +R S+ + G+ +G S +GK +++ + + +F++ D L VN TI
Sbjct: 17 GQQNGENDERNSVVIKVGM--VGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTI 72
Query: 92 NTKYYTADVSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDL 149
+ + T S+W EF + LP + + A++ +F+L+ STL+++K W +
Sbjct: 73 SVRRTTITFSIWDLGGQREF-VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGF 131
Query: 150 QKFEILLCIGNKVDLLPGHP 169
K I IG K D P
Sbjct: 132 NKTAIPFLIGTKFDQFATFP 151
>gi|242808404|ref|XP_002485155.1| RAB GTPase Ypt5, putative [Talaromyces stipitatus ATCC 10500]
gi|218715780|gb|EED15202.1| RAB GTPase Ypt5, putative [Talaromyces stipitatus ATCC 10500]
Length = 218
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 28/146 (19%)
Query: 43 RASLEKRPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
RA + RPG ++++G S VGK +++ R + F+D +S TI +
Sbjct: 4 RAPVGGRPGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRES---------TIGAAF 54
Query: 96 YTADVSL----------WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP 145
T +SL W E + + V+V+++ ++LD K WV
Sbjct: 55 LTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKSWVK 114
Query: 146 SIDLQKFE--ILLCIGNKVDLLPGHP 169
+ Q E I+ GNK+DL+ +P
Sbjct: 115 ELQRQANENIIIALAGNKLDLVTENP 140
>gi|297296733|ref|XP_001111371.2| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Macaca mulatta]
Length = 334
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 66 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 122
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + G++
Sbjct: 123 AWLPEVMILVCDRV----------------------------SEDGVN------------ 142
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC H E +E + DF +S GV+R+ AL+A++W
Sbjct: 143 -----RQKAQEWCIRHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 190
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 191 SNVVMKN 197
>gi|167535786|ref|XP_001749566.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771958|gb|EDQ85617.1| predicted protein [Monosiga brevicollis MX1]
Length = 199
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G VGK ++++R ++ F++ + + E L ++ K T + +W E
Sbjct: 10 VVILGDGGVGKSSLMARFVNNTFDEHNYHTIGVEFLNKDIIVDNK--TCHLQIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
+ P + VF+L D T D L W+ D F LL +GNKV
Sbjct: 68 RYKALRRPFYRGSDCCMFVFDLTDRHTFDHLDAWISEFKEFAEVEDPDNFPFLL-VGNKV 126
Query: 163 DLLPGHPVHAE 173
D+ HA+
Sbjct: 127 DVEGRQVAHAQ 137
>gi|345490640|ref|XP_001602002.2| PREDICTED: ras-related protein RabJ-like [Nasonia vitripennis]
Length = 219
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++GS VGK ++++R ++ F N TI ++T ++L
Sbjct: 8 VVLLGSQGVGKTSLINRYINNAFNHQ---------NNPTIGASFFTCKINLEDVRIKFQV 58
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGN 160
W E F + A +VF++ ++ A+K WV + ++++ +L+ +GN
Sbjct: 59 WDTAGQERFRSMAPMYYRNANAAFLVFDITQYNSFTAIKSWVTELQRNVEEPMVLILVGN 118
Query: 161 KVDLLPGHPVHAEYRRR 177
KVDL V +E R+
Sbjct: 119 KVDLSEKRKVDSEECRK 135
>gi|212537727|ref|XP_002149019.1| RAB GTPase Ypt5, putative [Talaromyces marneffei ATCC 18224]
gi|210068761|gb|EEA22852.1| RAB GTPase Ypt5, putative [Talaromyces marneffei ATCC 18224]
Length = 218
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 28/146 (19%)
Query: 43 RASLEKRPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
RA + RPG ++++G S VGK +++ R + F+D +S TI +
Sbjct: 4 RAPVGGRPGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRES---------TIGAAF 54
Query: 96 YTADVSL----------WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP 145
T +SL W E + + V+V+++ ++LD K WV
Sbjct: 55 LTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKSWVK 114
Query: 146 SIDLQKFE--ILLCIGNKVDLLPGHP 169
+ Q E I+ GNK+DL+ +P
Sbjct: 115 ELQRQANENIIIALAGNKLDLVTENP 140
>gi|350418387|ref|XP_003491843.1| PREDICTED: ras-related protein Rab-18-like [Bombus impatiens]
Length = 223
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG SNVGK +IL R F + S+ + + T +++W E F
Sbjct: 11 LLMIGESNVGKSSILLRFTEDEFHENMQSTVGMDYRTKQVTIDGNTVKLAIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL-LCIGNKVDLLPGH 168
+ ++V+++ D T L+ W+ ++ K +I+ + +GNK+D LP
Sbjct: 71 RTLTPSYYRDGQGAILVYDVTDRVTFMKLETWLNELNTYCNKTDIIKMVVGNKID-LPNR 129
Query: 169 PVHAEYRRRLLKREES 184
V E + +R ++
Sbjct: 130 EVSTEEGLQFARRHQT 145
>gi|392567789|gb|EIW60964.1| GTP-binding protein ypt1 [Trametes versicolor FP-101664 SS1]
Length = 203
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F D+ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFAEDAFTDSYLSTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ ++MV+++ + T +K W+ I+ E + L IGNK DL+
Sbjct: 71 RTIAAAYYRGAQGIIMVYDVTEQETFSNVKGWITEIERYASEGVKKLIIGNKSDLV 126
>gi|440908058|gb|ELR58125.1| Alpha- and gamma-adaptin-binding protein p34 [Bos grunniens mutus]
Length = 315
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G++
Sbjct: 104 SWLPEVMILVCDRVS----------------------------ENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|406864129|gb|EKD17175.1| Rab5-like protein ypt5 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 220
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +++ R + F+D +S TI + T +SL
Sbjct: 22 LVLLGESAVGKSSLVLRFVKDQFDDFRES---------TIGAAFLTQTISLDDNTTVKFE 72
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ S+LD K WV + Q E I+ G
Sbjct: 73 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKQWVKELQRQANENIIIALAG 132
Query: 160 NKVDLLPGHP 169
NK+DL+ P
Sbjct: 133 NKLDLVTAQP 142
>gi|149643037|ref|NP_001092366.1| alpha- and gamma-adaptin-binding protein p34 [Bos taurus]
gi|148745476|gb|AAI42461.1| MGC152585 protein [Bos taurus]
gi|296483607|tpg|DAA25722.1| TPA: hypothetical protein LOC507035 [Bos taurus]
Length = 315
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G++
Sbjct: 104 SWLPEVMILVCDRVS----------------------------ENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|332235984|ref|XP_003267186.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 isoform 1
[Nomascus leucogenys]
Length = 315
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + G++
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|91082425|ref|XP_970378.1| PREDICTED: similar to RAB18, member RAS oncogene family [Tribolium
castaneum]
gi|270007517|gb|EFA03965.1| hypothetical protein TcasGA2_TC014110 [Tribolium castaneum]
Length = 204
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
ILIIG S VGK +IL R NF+ + L G TK T D +++W
Sbjct: 11 ILIIGESGVGKSSILVRFTEDNFD-----PDQTLTIGVDFKTKKLTVDDNTVKLAIWDTA 65
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166
E F + ++V+++ + ST L+ W L + E N V ++
Sbjct: 66 GQERFRTLTPSYYRDAQGAILVYDVTNYSTFAKLETW-----LNELETYSTKANIVKMIV 120
Query: 167 GHPVHAEYRRRLLKREES 184
G+ + E R + REE+
Sbjct: 121 GNKIDKENRE--VNREEA 136
>gi|402874651|ref|XP_003901144.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 isoform 1
[Papio anubis]
Length = 334
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 66 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 122
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + G++
Sbjct: 123 AWLPEVMILVCDRV----------------------------SEDGVN------------ 142
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC H E +E + DF +S GV+R+ AL+A++W
Sbjct: 143 -----RQKAQEWCIRHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 190
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 191 SNVVMKN 197
>gi|307176879|gb|EFN66220.1| Alpha- and gamma-adaptin-binding protein p34 [Camponotus
floridanus]
Length = 259
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 58/235 (24%)
Query: 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
PG+LI+ + + I + + + D+ L W I+ KYYT+ + + H E
Sbjct: 4 PGVLIVSTKEGKAKEIAENIGAERLSEKDDTVDYL----WNIDNKYYTSQI---LIHTTE 56
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169
S + +S + ++V++ +++D Q+ E+L + N +
Sbjct: 57 NISYK---LSVEGINALIVYHDPQTNSVD-----------QELELLASLTNSL------- 95
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYI 229
AE F S I++T +R L WC ++ E +
Sbjct: 96 TTAEVFL-------------FSCSAITDTL-------------LRDKVLNWCLHNKFELV 129
Query: 230 EACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKEV 284
E + D +G+ G+ER+ AL AH WP +VLK+ + E +L V E+
Sbjct: 130 ELDQTG---DSESDTEGNKYGIERIIEALHAHTWPNIVLKNKPCVDE-TLKVNEI 180
>gi|452847264|gb|EME49196.1| hypothetical protein DOTSEDRAFT_68068 [Dothistroma septosporum
NZE10]
Length = 224
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 49 RPG--------ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTA 98
RPG ++++G S VGK +++ R + F+D +S+ + L ++ + T
Sbjct: 10 RPGGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDEQ-TTV 68
Query: 99 DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILL 156
+W E + + V+V+++ S+LD K WV + Q E I+
Sbjct: 69 KFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIIIA 128
Query: 157 CIGNKVDLLPGHP 169
GNK DL+ P
Sbjct: 129 LAGNKADLVAEQP 141
>gi|402469023|gb|EJW04091.1| small GTP-binding protein domain protein [Edhazardia aedis USNM
41457]
Length = 205
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG+S VGK ++L+R + + S+ + T+ + +W E F
Sbjct: 11 IILIGNSGVGKTSLLNRYIDNTYHGNYISTIGVDFKIKTLKVSSDLIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDLLPGH 168
+ +++VF++ DL + + W+ I +K EI L IGNK+DL
Sbjct: 71 RTITSAYYRGAHGIIIVFDMTDLDSFTKVTEWLDEIKARANEKVEIYL-IGNKIDLKDEI 129
Query: 169 PVHAEYRRRLLKREESSADPDFCQ 192
V E K+E + AD +F +
Sbjct: 130 CVQKE-DIEAFKKEHNIADSNFME 152
>gi|440298757|gb|ELP91388.1| GTP-binding protein YPTM2, putative [Entamoeba invadens IP1]
Length = 206
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK IL R F + S+ + IN K T + LW E F
Sbjct: 17 ILIIGESAVGKTAILERYCDNEFHEELISTIGVDFKSRVINYKGKTIKLQLWDTAGQERF 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLCIGNKVD 163
+ ++V+++ +++T + + +W+ + D +L +GNK+D
Sbjct: 77 RNITSSYYRGTHGCLIVYDVEEVTTFEKVSYWIDELNDCNIKPEILVVGNKID 129
>gi|123454888|ref|XP_001315193.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121897862|gb|EAY02970.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 200
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G S GK +++ R+++ +FE + + + +T +++W E++
Sbjct: 9 VLVVGDSGTGKTSLVDRIITGSFESSPLPTVGVEFKAYTTMANGSQIKLTIWDTAGQEKY 68
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGH 168
S+ + ALV VF++N + D + W+ I ++L +GNK DL
Sbjct: 69 RSVAKSYFRNGCGALV-VFSINSAESFDHCEQWIEDIHNGCLPNAVILLVGNKCDLESQR 127
Query: 169 PVHAEYRRRLLKR 181
V ++ R L +R
Sbjct: 128 QVTSDEARTLAQR 140
>gi|157873719|ref|XP_001685364.1| putative ras-related rab-4 [Leishmania major strain Friedlin]
gi|68128436|emb|CAJ08532.1| putative ras-related rab-4 [Leishmania major strain Friedlin]
Length = 203
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 15/152 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK +L R + F + + + I+ + +W E +
Sbjct: 11 LIVIGDSGVGKSCLLHRFIEDTFSEEQTQTIGIEYGAKIIDVGGAKVKLQIWDTAGQERY 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ T ++V+++N+ S+ +++ W+ D+++ +++ IGNK+DL G
Sbjct: 71 KSVTRSYYRGATGCLIVYDVNNRSSYESVPQWLS--DVRQLAGSDVVVMLIGNKMDLTKG 128
Query: 168 HPVHA---------EYRRRLLKREESSADPDF 190
+ V A + LL E S+A +F
Sbjct: 129 NSVRAVQHNEASLYAQQNGLLHFETSAATGEF 160
>gi|340726562|ref|XP_003401625.1| PREDICTED: ras-related protein Rab-18-like [Bombus terrestris]
Length = 223
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG SNVGK +IL R F + S+ + + T +++W E F
Sbjct: 11 LLMIGESNVGKSSILLRFTEDEFHENMQSTVGMDYRTKQVTIDGNTVKLAIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL-LCIGNKVDLLPGH 168
+ ++V+++ D T L+ W+ ++ K +I+ + +GNK+D LP
Sbjct: 71 RTLTPSYYRDGQGAILVYDVTDRVTFMKLETWLNELNTYCNKTDIIKMVVGNKID-LPNR 129
Query: 169 PVHAEYRRRLLKREES 184
V E + +R ++
Sbjct: 130 EVSTEEGLQFARRHQT 145
>gi|413942419|gb|AFW75068.1| hypothetical protein ZEAMMB73_080599 [Zea mays]
gi|413942420|gb|AFW75069.1| hypothetical protein ZEAMMB73_080599 [Zea mays]
Length = 205
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D S+ + TI+ T + +W E F
Sbjct: 13 LLLIGDSSVGKSCLLLRFADDSYVDTYISTIGVDFKIRTIDLDGKTVKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL+
Sbjct: 73 RTITSSYYRGAHGIIIVYDVTDMESFNNIKQWLSEIDRYASDNVCKLLVGNKCDLVDSKV 132
Query: 170 VHAE 173
V E
Sbjct: 133 VDTE 136
>gi|397515635|ref|XP_003828054.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Pan
paniscus]
Length = 314
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|224046089|ref|XP_002191205.1| PREDICTED: ras-related protein Rab-12 [Taeniopygia guttata]
Length = 250
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 51 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 110
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 111 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 164
>gi|395323826|gb|EJF56281.1| GTP-binding protein ypt1 [Dichomitus squalens LYAD-421 SS1]
Length = 206
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F D+ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFAEDAFTDSYLSTIGVDFKIRTIELEGRTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ ++MV+++ D T +K W+ I+ E + L IGNK DL+
Sbjct: 71 RTIAAAYYRGAHGIIMVYDVTDGETFSNVKGWMQEIERYASEGVKKLIIGNKSDLVEKKV 130
Query: 170 VH 171
V
Sbjct: 131 VE 132
>gi|153251315|ref|NP_078942.3| alpha- and gamma-adaptin-binding protein p34 isoform 1 [Homo
sapiens]
gi|62286981|sp|Q6PD74.1|P34_HUMAN RecName: Full=Alpha- and gamma-adaptin-binding protein p34
gi|37747445|gb|AAH58886.1| Alpha- and gamma-adaptin-binding protein p34 [Homo sapiens]
gi|55249553|gb|AAH47026.1| Alpha- and gamma-adaptin-binding protein p34 [Homo sapiens]
gi|119598199|gb|EAW77793.1| hypothetical protein FLJ11506, isoform CRA_b [Homo sapiens]
Length = 315
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|328874267|gb|EGG22633.1| hypothetical protein DFA_04763 [Dictyostelium fasciculatum]
Length = 661
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 37 EMDSTD-RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINT 93
E ++TD R LEK ++++G N GK I SRL+ F +DS+ + LV T++
Sbjct: 26 EGNNTDNRNKLEKGVKLVLLGDMNTGKTCIASRLVRNEFV-PTDSTIGAAFLVKNMTLDN 84
Query: 94 KYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE 153
T + +W E + + +A V+V+++ +T + LK WV + Q
Sbjct: 85 G-NTVKLEIWDTAGQERYRSLTPMYYRGASAAVIVYDITKKNTFETLKRWVSELQKQASP 143
Query: 154 --ILLCIGNKVDL 164
IL GNK DL
Sbjct: 144 NLILALAGNKADL 156
>gi|114657791|ref|XP_001174780.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 isoform 2
[Pan troglodytes]
gi|410217848|gb|JAA06143.1| alpha- and gamma-adaptin binding protein [Pan troglodytes]
gi|410247626|gb|JAA11780.1| alpha- and gamma-adaptin binding protein [Pan troglodytes]
gi|410295732|gb|JAA26466.1| alpha- and gamma-adaptin binding protein [Pan troglodytes]
gi|410330961|gb|JAA34427.1| alpha- and gamma-adaptin binding protein [Pan troglodytes]
Length = 315
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|302678978|ref|XP_003029171.1| hypothetical protein SCHCODRAFT_58690 [Schizophyllum commune H4-8]
gi|300102861|gb|EFI94268.1| hypothetical protein SCHCODRAFT_58690, partial [Schizophyllum
commune H4-8]
Length = 193
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 52 ILIIGSSNVGKRTILSRLL----SVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
IL+IG+S VGK ++L R L S N A + ++ T+N + +S+W
Sbjct: 17 ILLIGNSQVGKSSLLLRFLNTDESFNANTAVTVGMDFHLHAMTVNGR--KVRLSIWDTAG 74
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL 165
E F + +V+V+++ D + +AL+ W ++ + + + + NKVD
Sbjct: 75 QERFRSLTNNFYRGAQGVVLVYDVADRGSFEALRQWYADVESRAPSEVVKILVANKVDKT 134
Query: 166 PGHPVH----AEYRRRL 178
G + A Y R++
Sbjct: 135 EGRQISKDEGAAYARQM 151
>gi|255644772|gb|ACU22888.1| unknown [Glycine max]
Length = 236
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK ILSR F S S+ E TIN K A + W E
Sbjct: 27 VVVIGDSAVGKTQILSRFAKNEFCFNSKSTIGVEFQTRSVTINGKVIKAQI--WDTAGQE 84
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
+ ++ S L A+ +V+++ + D + WV + +++ IGNK DL+
Sbjct: 85 RYRAVTSAYYRGALGAM-LVYDITKRQSFDHVARWVDELRAHADSSIVIMLIGNKGDLVD 143
Query: 167 GHPVHAE 173
VHAE
Sbjct: 144 QRVVHAE 150
>gi|363730689|ref|XP_003640848.1| PREDICTED: ras-related protein Rab-12 [Gallus gallus]
Length = 250
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 51 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 110
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 111 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 164
>gi|158186685|ref|NP_037149.1| ras-related protein Rab-12 [Rattus norvegicus]
gi|449081279|sp|P35284.2|RAB12_RAT RecName: Full=Ras-related protein Rab-12
Length = 243
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 44 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 103
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 104 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 157
>gi|66472490|ref|NP_001018466.1| ras-related protein Rab-12 [Danio rerio]
gi|63100845|gb|AAH95608.1| Zgc:111945 [Danio rerio]
gi|182889626|gb|AAI65429.1| Zgc:111945 protein [Danio rerio]
Length = 235
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 38 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 97
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ + +V+V+++ T + L W+ ID E LL +GNK+D
Sbjct: 98 NSITSAYYRGAKGIVLVYDITKQETFEDLPKWMKMIDKYASEDAELLLVGNKLDCESDRA 157
Query: 170 VHAEYRRRLLKR 181
+ + R R
Sbjct: 158 ISRQQAERFASR 169
>gi|357603715|gb|EHJ63893.1| hypothetical protein KGM_16919 [Danaus plexippus]
Length = 204
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 22/202 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G SNVGK I+ R + D S+ + IN + +W E F
Sbjct: 11 LLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ +++++++ +L + + L +W+ +I Q++ I + +GNK D
Sbjct: 71 RTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNI--QEYASPDVIKVLVGNKCD---- 124
Query: 168 HPVHAEYRRRLLKREESSAD----PDF---CQSGISETEGSSLLGDEEPSW-EIRRSCLE 219
VH +R +R + AD P F C+S I+ E L + + E + E
Sbjct: 125 --VHENHRAVPRERGQKIADDFDMPFFEVSCKSNINIEEAFVTLARKIREYRETKADAFE 182
Query: 220 WCTEHRIEYIEACASNVDFDKC 241
+ R I+A S D KC
Sbjct: 183 L--KERDNVIKASESETDVSKC 202
>gi|67967715|dbj|BAE00340.1| unnamed protein product [Macaca fascicularis]
gi|355692823|gb|EHH27426.1| Alpha- and gamma-adaptin-binding protein p34 [Macaca mulatta]
gi|355778126|gb|EHH63162.1| Alpha- and gamma-adaptin-binding protein p34 [Macaca fascicularis]
gi|380816580|gb|AFE80164.1| alpha- and gamma-adaptin-binding protein p34 [Macaca mulatta]
gi|383412083|gb|AFH29255.1| alpha- and gamma-adaptin-binding protein p34 [Macaca mulatta]
Length = 315
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + G++
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIRHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|395511720|ref|XP_003760101.1| PREDICTED: ras-related protein Rab-12 [Sarcophilus harrisii]
Length = 246
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 47 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 106
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 107 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 160
>gi|67469385|ref|XP_650671.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56467319|gb|EAL45284.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790150|dbj|BAD82871.1| small GTPase EhRabX23 [Entamoeba histolytica]
gi|449705577|gb|EMD45593.1| small GTPase EhRabX23, putative [Entamoeba histolytica KU27]
Length = 186
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAH 106
R ++ IG +VGK I+ R S NF+ + D++ ++ + ++ K ++ +W
Sbjct: 6 RHKVVFIGDCSVGKTCIIGRFTSKNFDMSYDATIGTDFVTQIMDVDNK--KIELQIWDTA 63
Query: 107 LHEEFSIRSLPISDQL---TALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163
E + RSL I + + + +V+V++++D T + + HW + ++ ++ +GNKVD
Sbjct: 64 GQERY--RSL-IPNYIRGASVVVIVYDISDKQTFNNIDHWFDEVPDRESTLVYIVGNKVD 120
Query: 164 LLPG 167
G
Sbjct: 121 SQRG 124
>gi|392562659|gb|EIW55839.1| small monomeric GTPase [Trametes versicolor FP-101664 SS1]
Length = 219
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TIN 92
R +DS ++ S+ + G+L G S +GK +++ + + +F++ D L VN TI
Sbjct: 19 RPNLDSNEQNSVVIKVGML--GDSQIGKTSLMVKYVEGHFDE--DYIQTLGVNFMEKTIT 74
Query: 93 TKYYTADVSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQ 150
+ + SLW EF + LP + + A++ +F+L+ STL+++K W +
Sbjct: 75 VRRTSITFSLWDLGGQREF-VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFN 133
Query: 151 KFEILLCIGNKVDLLPGHP 169
K I IG K D P
Sbjct: 134 KTAIPFLIGTKFDTFSTFP 152
>gi|384496634|gb|EIE87125.1| hypothetical protein RO3G_11836 [Rhizopus delemar RA 99-880]
Length = 234
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
K ++++G S VGK +I+ R + + + + + N K + +W
Sbjct: 20 KNVKLVLLGESAVGKSSIVLRFVDRQYVENREPTIGAAFLNQKCNFKDRSIKFEIWDTAG 79
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL 165
E F + A ++V+++ +TLD K WV + Q ++ +GNK+DL+
Sbjct: 80 QERFHSLAPMYYRNSQAAIVVYDITKAATLDKAKSWVKELQRQANTDIVIALVGNKLDLV 139
Query: 166 P---GHPVHAEYRRRLLKREESSADPD 189
G P+ E R + +E++ A D
Sbjct: 140 EGEDGEPLEDEEHEREVSKEDAQAYAD 166
>gi|432911398|ref|XP_004078660.1| PREDICTED: ras-related protein Rab-12-like [Oryzias latipes]
Length = 242
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 43 RASLEKRPG-----ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
R + RP I+IIGS VGK +++ R F +A S+ + T+ +
Sbjct: 31 RRKMPPRPADFKLQIIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 90
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--IL 155
+ +W E F+ + +V+V+++ T + L W+ ID E L
Sbjct: 91 IRLQIWDTAGQERFNSITSAYYRGAKGIVLVYDITKQETFEDLPKWMKMIDKYASEEAEL 150
Query: 156 LCIGNKVD 163
L +GNK+D
Sbjct: 151 LLVGNKLD 158
>gi|67482255|ref|XP_656477.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|50978614|dbj|BAD34974.1| EhRab7G protein [Entamoeba histolytica]
gi|56473678|gb|EAL51093.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449708325|gb|EMD47807.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 190
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK +++ R + FE ++ + L + K Y ++ +W HE
Sbjct: 4 LILIGESGVGKTSLIQRYVMNKFEPTYKTTIGCDFLAKTVYVENKEY--NLQIWDTAGHE 61
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP----SIDLQKFEILLCIGNKVDLL 165
+FS ++VF++ + S+ A+ W+ +++ + I++C GNKVD
Sbjct: 62 KFSSMVSSFYRGSDGAIIVFDVTNTSSFTAIDTWISEYSRALNGKDVPIIIC-GNKVDCQ 120
Query: 166 P 166
P
Sbjct: 121 P 121
>gi|156121229|ref|NP_001095762.1| ras-related protein Rab-12 [Bos taurus]
gi|151554332|gb|AAI49543.1| RAB12 protein [Bos taurus]
Length = 244
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 45 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 104
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 105 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 158
>gi|307214891|gb|EFN89759.1| Ras-related protein Rab-18 [Harpegnathos saltator]
Length = 223
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
MD D ++ K IL+IG SNVGK +IL R F + S+ + I+
Sbjct: 1 MDQEDYLTILK---ILMIGESNVGKSSILLRFTEDEFYENMQSTVGMDYKTKQISIDGNI 57
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL 155
+++W E F + ++++++ D +T L+ W+ ++ K +I+
Sbjct: 58 VKLAIWDTAGQERFRTLTPSYYRDGQGAILMYDVTDRNTFVKLETWLNELNTYCNKTDIV 117
Query: 156 -LCIGNKVDLLPGHPVHAEYRRRLLKREES 184
+ +GNK+D LP V E + +R ++
Sbjct: 118 KMVVGNKID-LPNREVSTEEGLQFARRHQT 146
>gi|356573249|ref|XP_003554775.1| PREDICTED: ras-related protein RABA3-like [Glycine max]
Length = 236
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK ILSR F S S+ E TIN K A + W E
Sbjct: 27 VVVIGDSAVGKTQILSRFAKNEFCFNSKSTIGVEFQTRSVTINGKVIKAQI--WDTAGQE 84
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
+ ++ S L A+ +V+++ + D + WV + +++ IGNK DL+
Sbjct: 85 RYRAVTSAYYRGALGAM-LVYDITKRQSFDHVARWVDELRAHADSSIVIMLIGNKGDLVD 143
Query: 167 GHPVHAE 173
VHAE
Sbjct: 144 QRVVHAE 150
>gi|145522135|ref|XP_001446917.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833715|emb|CAI39332.1| rab_C73 [Paramecium tetraurelia]
gi|124414406|emb|CAK79520.1| unnamed protein product [Paramecium tetraurelia]
Length = 213
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R NF+ S+ + +I+ + + +W E F
Sbjct: 18 VLLIGDSGVGKTNVLLRFCENNFQPTYLSTIGIDFKIKSIDVEGKKIKMQIWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++++D + +++W+ I E + L IGNK+D +P
Sbjct: 78 KTITQTYYKGAMGIILVYSIDDRESFKNIQNWMSQIKQHASENVCKLLIGNKID-VPNRQ 136
Query: 170 VHAEYRRRLLK 180
V E L K
Sbjct: 137 VTKEEGEELAK 147
>gi|294883408|ref|XP_002770925.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239874051|gb|EER02741.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 211
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 16 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +KHWV ID E + L +GNK DL
Sbjct: 76 RTITSSYYRGAHGIIIVYDVTDRESFNNVKHWVQEIDKYATENVSKLLVGNKSDL 130
>gi|106507164|ref|NP_001020471.2| ras-related protein Rab-12 [Homo sapiens]
gi|114672319|ref|XP_001140752.1| PREDICTED: ras-related protein Rab-12 [Pan troglodytes]
gi|122064944|sp|Q6IQ22.3|RAB12_HUMAN RecName: Full=Ras-related protein Rab-12
gi|119622021|gb|EAX01616.1| hCG37212 [Homo sapiens]
gi|307684354|dbj|BAJ20217.1| RAB12, member RAS oncogene family [synthetic construct]
gi|410212514|gb|JAA03476.1| RAB12, member RAS oncogene family [Pan troglodytes]
gi|410255034|gb|JAA15484.1| RAB12, member RAS oncogene family [Pan troglodytes]
Length = 244
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 45 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 104
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 105 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 158
>gi|358248878|ref|NP_001239700.1| uncharacterized protein LOC100787725 [Glycine max]
gi|255639774|gb|ACU20180.1| unknown [Glycine max]
Length = 236
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVN--FEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK ILSR F+ S E TIN K A + W E
Sbjct: 27 VVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQI--WDTAGQE 84
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
+ ++ S L A+ +V++++ + D + WV + +++ IGNK DL+
Sbjct: 85 RYRAVTSAYYRGALGAM-LVYDISKRQSFDHVARWVDELRAHADSSIVIMLIGNKGDLVD 143
Query: 167 GHPVHAE 173
VHAE
Sbjct: 144 QRVVHAE 150
>gi|106507168|ref|NP_077768.2| ras-related protein Rab-12 [Mus musculus]
gi|122065941|sp|P35283.3|RAB12_MOUSE RecName: Full=Ras-related protein Rab-12; AltName: Full=Rab-13
gi|112292983|dbj|BAF02869.1| Rab12 [Mus musculus]
gi|157170004|gb|AAI52767.1| RAB12, member RAS oncogene family [synthetic construct]
Length = 243
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 44 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 103
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 104 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 157
>gi|384945738|gb|AFI36474.1| ras-related protein Rab-12 [Macaca mulatta]
Length = 246
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 47 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 106
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 107 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 160
>gi|332225892|ref|XP_003262119.1| PREDICTED: ras-related protein Rab-12 [Nomascus leucogenys]
Length = 244
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 45 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 104
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 105 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 158
>gi|126277096|ref|XP_001367559.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
isoform 2 [Monodelphis domestica]
Length = 317
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + F + + I++ + A ++ F+ S+LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNRFLV-TAEIAETVQAFIVYFDSTLNSSLDSVSAWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G+S
Sbjct: 104 AWLPEVMILVCDRVS----------------------------ENGVS------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RPRAQEWCIQHGFELVELNPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+KS
Sbjct: 172 SNVVMKS 178
>gi|10432774|dbj|BAB13845.1| unnamed protein product [Homo sapiens]
Length = 315
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCLKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|402902666|ref|XP_003914219.1| PREDICTED: ras-related protein Rab-12 [Papio anubis]
Length = 247
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 48 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 107
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 108 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 161
>gi|407040921|gb|EKE40414.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 186
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAH 106
R ++ IG +VGK I+ R S NF+ + D++ ++ + ++ K ++ +W
Sbjct: 6 RHKVVFIGDCSVGKTCIIGRFTSKNFDMSYDATIGTDFVTQIMDVDNK--KIELQIWDTA 63
Query: 107 LHEEFSIRSLPISDQL---TALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163
E + RSL I + + + +V+V++++D T + + HW + ++ ++ +GNKVD
Sbjct: 64 GQERY--RSL-IPNYIRGASVVVIVYDISDKQTFNNIDHWFDEVPDRESTLVYIVGNKVD 120
>gi|126321829|ref|XP_001364776.1| PREDICTED: ras-related protein Rab-12-like [Monodelphis domestica]
Length = 246
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 47 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 106
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 107 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 160
>gi|123498562|ref|XP_001327427.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121910356|gb|EAY15204.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 197
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
+ IG S+VGK +++R + F +A ++ + + +T + +V +W E+F
Sbjct: 12 VTIGESSVGKTCLVNRFIRNKFNNAEANTVGAIYDTYTERRGDQSIEVQIWDTAGQEKF- 70
Query: 113 IRSL-PISDQ-LTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
RSL P+ + A V+VF++ ST L+ W+ E ++ +GNKVDL
Sbjct: 71 -RSLAPVYYRGADAAVVVFDMTKPSTFQCLQSWIDDFKGVAGEQSAVIIVGNKVDL 125
>gi|398403677|ref|XP_003853305.1| ras small GTPase related protein [Zymoseptoria tritici IPO323]
gi|339473187|gb|EGP88281.1| ras small GTPase related protein [Zymoseptoria tritici IPO323]
Length = 225
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +++ R + F+D +S+ + L ++ + T +W E
Sbjct: 21 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDEQ-TTVKFEIWDTAGQE 79
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
+ + V+V+++ S+LD K WV + Q E I+ GNK DL+
Sbjct: 80 RYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIIIALAGNKADLVAE 139
Query: 168 HP 169
P
Sbjct: 140 QP 141
>gi|167386978|ref|XP_001737975.1| small GTPase rabd [Entamoeba dispar SAW760]
gi|165899005|gb|EDR25714.1| small GTPase rabd, putative [Entamoeba dispar SAW760]
Length = 194
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 25/143 (17%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-------SSELLVNGWTINTKYYTADVSLWM 104
+++IG S+VGK ++R +S F + + S S E+ VNG + + +W
Sbjct: 3 LIMIGESSVGKTCCMNRFVSDQFSEVTKSTVGVGMVSKEIEVNGIKV-------KLQIWD 55
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID-LQKFEILLCIGNKVD 163
E F+ S V++F++++ + + + +W+ + + +++ +L+ GNKVD
Sbjct: 56 TAGQERFATLSSNYFRNAMGGVIMFDVSNRQSFENISNWIDACNKIEEKRVLVLAGNKVD 115
Query: 164 LLPGHPVHAEYRRRLLKREESSA 186
L R++ +EE A
Sbjct: 116 L----------SERVITKEEGEA 128
>gi|56790148|dbj|BAD82870.1| small GTPase EhRabX22 [Entamoeba histolytica]
Length = 192
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108
+ I+ +G S+VGK I+ R ++ +F +++ + T+ + + + +W
Sbjct: 2 KQKIVFLGDSSVGKTCIIGRFMTGDFNTGYEATIGTDFSTKTMTFQNKSIQLQIWDTAGQ 61
Query: 109 EEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEI-LLCIGNKVD 163
E + RSL I D +A V+V+++ND + +++ W+ + +K EI L +GNK+D
Sbjct: 62 ERY--RSLIPSYIRDS-SAAVIVYDINDRQSFESVDKWIEDVRSKEKGEIFLFLVGNKLD 118
Query: 164 LLPGH 168
L GH
Sbjct: 119 L--GH 121
>gi|348521982|ref|XP_003448505.1| PREDICTED: ras-related protein Rab-12-like [Oreochromis niloticus]
Length = 243
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 43 RASLEKRPG-----ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
R + RP I+IIGS VGK +++ R F +A S+ + T+ +
Sbjct: 32 RRKMPPRPADFKLQIIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 91
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--IL 155
+ +W E F+ + +V+V+++ T + L W+ ID E L
Sbjct: 92 IRLQIWDTAGQERFNSITSAYYRGAKGIVLVYDITKQETFEDLPKWMKMIDKYASEEAEL 151
Query: 156 LCIGNKVD 163
L +GNK+D
Sbjct: 152 LLVGNKLD 159
>gi|126277094|ref|XP_001367516.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
isoform 1 [Monodelphis domestica]
Length = 315
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + F + + I++ + A ++ F+ S+LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNRFLV-TAEIAETVQAFIVYFDSTLNSSLDSVSAWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G+S
Sbjct: 104 AWLPEVMILVCDRVS----------------------------ENGVS------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RPRAQEWCIQHGFELVELNPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+KS
Sbjct: 172 SNVVMKS 178
>gi|67483236|ref|XP_656897.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56474125|gb|EAL51508.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790056|dbj|BAD82824.1| small GTPase EhRabC4 [Entamoeba histolytica]
gi|449704320|gb|EMD44588.1| small GTPase EhRabC4, putative [Entamoeba histolytica KU27]
Length = 203
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILI+G S VGK IL R + F++ S+ + +N T + +W E F
Sbjct: 12 ILIVGDSGVGKTAILQRYCNNTFDERYISTIGVDFKPMILNVGERTIKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVD 163
+ TA+++V+++N+ +L + W ++ Q+ ++ +GNK D
Sbjct: 72 MNITAAYFRNTTAVIIVYDVNNRDSLSKVYSWYGEVNEKTTQQNPVIFLVGNKKD 126
>gi|340382696|ref|XP_003389854.1| PREDICTED: ras-related protein Rab-3-like [Amphimedon
queenslandica]
Length = 218
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINT 93
+ +DS + + IL++G+S VGK +SR +F A S + V N
Sbjct: 7 ETLDSVMDVNFDYMYKILMVGNSGVGKTAYVSRYCDDHFNPAFISTVGIDFRVKNLIRNQ 66
Query: 94 KYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE 153
K + +W E + + +++F+L T A + W+ I E
Sbjct: 67 K--RIKLQIWDTAGQERYQAITTAYYHGAMGFIVMFDLTSEDTFSACRMWIQQIKEMALE 124
Query: 154 --ILLCIGNKVDLLPGHPVHAE 173
I+L IGNKVDL V E
Sbjct: 125 NAIILLIGNKVDLTAQRQVSTE 146
>gi|225556792|gb|EEH05080.1| GTP-binding protein ypt5 [Ajellomyces capsulatus G186AR]
gi|240281654|gb|EER45157.1| GTP-binding protein [Ajellomyces capsulatus H143]
gi|325087805|gb|EGC41115.1| GTP-binding protein ypt5 [Ajellomyces capsulatus H88]
Length = 217
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 43 RASLEKRPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TK 94
RA RPG ++++G S VGK +++ R + F+D +S+ TI+ +
Sbjct: 4 RAVAGGRPGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDE 63
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E + + V+V+++ S+LD K WV + Q E
Sbjct: 64 NTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANEN 123
Query: 154 -ILLCIGNKVDLLPGHP 169
++ GNK+DL+ P
Sbjct: 124 IVIALAGNKLDLVTDSP 140
>gi|157866120|ref|XP_001681766.1| putative small Rab GTP binding protein [Leishmania major strain
Friedlin]
gi|68125065|emb|CAJ02473.1| putative small Rab GTP binding protein [Leishmania major strain
Friedlin]
Length = 212
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 38 MDSTDRASLEKRPG---------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG 88
M S RAS + G ++++G S VGK +++ RL+ F + +S+
Sbjct: 1 MSSISRASTTTKAGGSASTRKFKLVLLGESGVGKSSVVQRLMKNAFSEKLNSTVGASFFR 60
Query: 89 WTINTKYYTA-DVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPS 146
+T N TA +W E F S+ S+ ALV VF++ T + ++W+
Sbjct: 61 YTCNVDDDTAVHFDIWDTAGQERFKSLASMYYRGAAAALV-VFDIVSADTFEKARYWIRE 119
Query: 147 IDLQKFE-ILLCIGNKVDL 164
+ E I++ +GNK DL
Sbjct: 120 LQANSPETIVMLVGNKKDL 138
>gi|327281978|ref|XP_003225722.1| PREDICTED: ras-related protein Rab-12-like [Anolis carolinensis]
Length = 258
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 59 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 118
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 119 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 172
>gi|407039029|gb|EKE39422.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 207
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 19/152 (12%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
Q++ +T R + K ++++G S+VGK +++ + F S+S + G TK
Sbjct: 3 QQVRNTTRLTPLK---LIVVGDSSVGKTSLIQMFANNQF-----SNSVVSTVGIDFLTKR 54
Query: 96 YTAD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
Y D V +W E+F + V+++++ + ST DA+ +WV +LQ
Sbjct: 55 YEVDGTTYKVQIWDTAGQEKFRTIITSYYRGVQGAVLIYDVTNKSTFDAINYWVK--NLQ 112
Query: 151 KF--EIL--LCIGNKVDLLPGHPVHAEYRRRL 178
+F +++ + +GNK DL V E + L
Sbjct: 113 EFGEQVIGRILVGNKTDLEQHRTVSTEMGQSL 144
>gi|301772340|ref|XP_002921593.1| PREDICTED: ras-related protein Rab-4A-like [Ailuropoda melanoleuca]
Length = 304
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 11/157 (7%)
Query: 15 SLLIAIDEDRLSFVRVLIFGRQEMD----STDRASLEKRPGILIIGSSNVGKRTILSRLL 70
+L +A D V+ GR++ D ST L K L+IG++ GK +L + +
Sbjct: 64 NLCLAFRSDNSMKEEVVALGRRQQDEQKLSTTGDFLFK---FLVIGNAGTGKSCLLHQFI 120
Query: 71 SVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130
F+D S+ + + IN + +W E F + ++V++
Sbjct: 121 EKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 180
Query: 131 LNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ T +AL +W+ + Q I+LC GNK DL
Sbjct: 181 ITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 216
>gi|440297609|gb|ELP90266.1| rab10, putative [Entamoeba invadens IP1]
Length = 205
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF---EDASDSSSELLVNGWTI-NTKYYTADVSLWMAHL 107
IL++G + VGK +L+R F E+ S +++ +V+ T ++K + + L+
Sbjct: 14 ILVLGEAGVGKTCLLTRFADKTFTEEEELSTNANFKVVDVPTPESSKAKSVKLELYDTAG 73
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDL 164
E F I + + +VF+LND ++ L++W I+ + I++ +GNK DL
Sbjct: 74 QERFRILTSSFYRKCCGAFLVFDLNDRNSFQNLQNWSKDIEYYANKAIVIVVGNKSDL 131
>gi|145512599|ref|XP_001442216.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831288|emb|CAI39277.1| rab_B67 [Paramecium tetraurelia]
gi|74833789|emb|CAI39358.1| rab_A67 [Paramecium tetraurelia]
gi|124409488|emb|CAK74819.1| unnamed protein product [Paramecium tetraurelia]
Length = 213
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R NF+ S+ + +I+ + + +W E F
Sbjct: 18 ILLIGDSGVGKTNVLLRFCENNFQQTYLSTIGIDFKIKSIDVEGKKIKMQIWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++++D + + W+ I E + L IGNK+D +P
Sbjct: 78 KTITQTYYKGAMGIILVYSIDDKDSFTNISSWMNQIKQHASENVCKLLIGNKID-VPNRQ 136
Query: 170 VHAEYRRRLLKR 181
V E L K+
Sbjct: 137 VSKEEGEALAKQ 148
>gi|426254019|ref|XP_004020685.1| PREDICTED: ras-related protein Rab-12 [Ovis aries]
Length = 430
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 231 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 290
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 291 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 344
>gi|156388137|ref|XP_001634558.1| predicted protein [Nematostella vectensis]
gi|156221642|gb|EDO42495.1| predicted protein [Nematostella vectensis]
Length = 204
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILI+G S VGK ++L R F+ ++ + T+ + A +++W E F
Sbjct: 11 ILIVGESGVGKSSLLLRFTDDTFDPDIGATIGVDFKVKTLTVEGNKAKLAIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVD 163
+ +++V++ N T D L+ W+ +++ +K + + +GNK+D
Sbjct: 71 RTLTPSYYRGAQGVILVYDTNSRETFDKLEEWLNEVEMYSTKKDIVKMLVGNKID 125
>gi|417408868|gb|JAA50968.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 232
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 33 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 92
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 93 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 146
>gi|118138456|pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142
>gi|229462781|sp|Q5JT25.2|RAB41_HUMAN RecName: Full=Ras-related protein Rab-41
gi|119625752|gb|EAX05347.1| RAB41, member RAS homolog family [Homo sapiens]
Length = 222
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN 92
FG + + T+ SL K +L +G +VGK +I+SR + +F A ++ + T+
Sbjct: 16 FGLEAAERTEYQSLCKSK-LLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMY 74
Query: 93 TKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151
+ + LW E F S+ I D A+V V+++ ++++ WV + ++
Sbjct: 75 LEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVV-VYDITNINSFKETDKWVEHVRAER 133
Query: 152 FE--ILLCIGNKVDLLPGHPVHAE 173
+ +++ +GNK+DL V AE
Sbjct: 134 GDDVVIMLLGNKIDLDNKRQVTAE 157
>gi|380799405|gb|AFE71578.1| ras-related protein Rab-12, partial [Macaca mulatta]
Length = 222
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 23 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 82
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 83 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 136
>gi|407041210|gb|EKE40595.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 203
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILI+G S VGK IL R + F++ S+ + +N T + +W E F
Sbjct: 12 ILIVGDSGVGKTAILQRYCNNTFDERYISTIGVDFKPMILNVGERTIKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVD 163
+ TA+++V+++N+ +L+ + W ++ Q ++ +GNK D
Sbjct: 72 MNITAAYFRNTTAVIIVYDVNNRDSLNKVYSWYGEVNEKTTQPNPVIFLVGNKKD 126
>gi|183232546|ref|XP_655103.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|169801978|gb|EAL49717.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449709304|gb|EMD48591.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 196
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108
+ I+ +G S+VGK I+ R ++ +F +++ + T+ + + + +W
Sbjct: 6 KQKIVFLGDSSVGKTCIIGRFMTGDFNTGYEATIGTDFSTKTMTFQNKSIQLQIWDTAGQ 65
Query: 109 EEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEI-LLCIGNKVD 163
E + RSL I D +A V+V+++ND + +++ W+ + +K EI L +GNK+D
Sbjct: 66 ERY--RSLIPSYIRDS-SAAVIVYDINDRQSFESVDKWIEDVRSKEKGEIFLFLVGNKLD 122
Query: 164 LLPGH 168
L GH
Sbjct: 123 L--GH 125
>gi|355704896|gb|EHH30821.1| Ras-related protein Rab-41, partial [Macaca mulatta]
gi|355757440|gb|EHH60965.1| Ras-related protein Rab-41, partial [Macaca fascicularis]
Length = 222
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN 92
FG + + T+ SL K +L +G +VGK ++++R + +F A ++ + T+
Sbjct: 16 FGLEAAERTEYQSLCKSK-LLFLGEPSVGKTSVITRFMYNSFGCACQATVGIDFLSKTMY 74
Query: 93 TKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151
+ + LW E F S+ I D A+V V+++ ++S+ WV + ++
Sbjct: 75 LEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVV-VYDITNISSFKETDKWVEHVRAER 133
Query: 152 FE--ILLCIGNKVDLLPGHPVHAE 173
+ +++ +GNK+DL V AE
Sbjct: 134 GDDVVIMLVGNKIDLDNKRQVTAE 157
>gi|291402795|ref|XP_002718217.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34
[Oryctolagus cuniculus]
Length = 315
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + F I + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNRFLI-TAEIAECVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + +V ++G++
Sbjct: 104 AWLPEVMILVCERVS----------------------------ENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIIQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|242073190|ref|XP_002446531.1| hypothetical protein SORBIDRAFT_06g017650 [Sorghum bicolor]
gi|241937714|gb|EES10859.1| hypothetical protein SORBIDRAFT_06g017650 [Sorghum bicolor]
Length = 207
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R ++ D+ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEMEGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNVKQWLSEIDRYANDTVCKLLVGNKCDLAESRT 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|426379483|ref|XP_004056425.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Gorilla
gorilla gorilla]
Length = 194
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINL--CVVPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRVS----------------------------EDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|440294618|gb|ELP87618.1| hypothetical protein EIN_146120 [Entamoeba invadens IP1]
Length = 213
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 41 TDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
T + S + IL+IG S VGK I+ R F+ S+ + N +N +
Sbjct: 13 TAKRSFDHLFKILVIGESGVGKTAIMQRYCENTFDPVYISTVGVDFNPKIVNCNDKVIKM 72
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI---DLQKFEILLC 157
LW E F + +++VF++ D T + + W + ++ + ++
Sbjct: 73 QLWDTAGQERFRNITTSYYRGTQGVLIVFDMTDKFTFEKVITWFQDVMEHNMVESPVIYL 132
Query: 158 IGNKVDLLPGHPVHAE 173
+GNK+DL + ++ E
Sbjct: 133 VGNKLDLEGKYVINRE 148
>gi|325303040|tpg|DAA34577.1| TPA_exp: GTPase Rab18 [Amblyomma variegatum]
Length = 201
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG SNVGK ++L R F+ ++ + T+ A +++W E F
Sbjct: 12 ILIIGESNVGKSSLLLRFTDDVFDPNLAATIGVDFKVKTLTVDGNKAKLAIWDTAGSERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLPGH 168
+ ++V+++ + ST L HW+ ++ + + + +GNK+D L
Sbjct: 72 RTLTPSYYRGAQGAILVYDVCNHSTFQKLDHWLAELETYCTRNNVVKMLVGNKIDKLENR 131
Query: 169 PVHAE----YRRR--LLKREESSADPDFCQSGISE 197
V E Y R+ +L E S+ D Q E
Sbjct: 132 EVTKEQGMNYARKHSMLFIEASAKTRDGVQCAFEE 166
>gi|449459232|ref|XP_004147350.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus]
gi|449513301|ref|XP_004164289.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus]
Length = 209
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 38 MDST-DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY 96
MDST ++ + +L+IG S VGK ++L S NFED S + G KY
Sbjct: 1 MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTI------GVDFKVKYV 54
Query: 97 TA-----DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQ 150
TA +++W E F + ++MV+++ T L W IDL
Sbjct: 55 TAGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLY 114
Query: 151 KFE---ILLCIGNKVD 163
I + +GNKVD
Sbjct: 115 STNQDCIKMLVGNKVD 130
>gi|300175138|emb|CBK20449.2| unnamed protein product [Blastocystis hominis]
Length = 202
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D ++ + T++ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDQYSDCYITTIGVDFKIRTVDLDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++V+++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDLDSFNNVKTWLHEIDRYANENVVKLLVGNKADLTAKKV 130
Query: 170 VHAEYRRRL 178
V E +
Sbjct: 131 VSYETAKEF 139
>gi|48103887|ref|XP_392903.1| PREDICTED: ras-related protein Rab-18-B [Apis mellifera]
Length = 223
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG SNVGK +I+ R F + S+ + + T +++W E F
Sbjct: 13 LLMIGESNVGKSSIILRFTEDEFHENMQSTVGMDYRTKQVTIDGNTVKLAIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL-LCIGNKVDLLPGH 168
+ ++V+++ D T L+ W+ ++ K +I+ + +GNK+D LP
Sbjct: 73 RTLTPSYYRDGQGAILVYDVTDRVTFMKLETWLNELNTYCNKTDIIKMVVGNKID-LPNR 131
Query: 169 PVHAEYRRRLLKREES 184
V E + +R ++
Sbjct: 132 EVSTEEGLQFARRHQT 147
>gi|341886829|gb|EGT42764.1| hypothetical protein CAEBREN_29398 [Caenorhabditis brenneri]
Length = 201
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 10 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T + +K W+ ID E + L +GNK DL
Sbjct: 70 RTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEIDRYACENVNKLLVGNKCDLTAKRA 129
Query: 170 VHAE 173
V +
Sbjct: 130 VETQ 133
>gi|303730|dbj|BAA02108.1| GTP-binding protein [Pisum sativum]
gi|738933|prf||2001457A GTP-binding protein
Length = 215
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 4/148 (2%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
MD + E I++IG S VGK +LSR F+ S ++ + T+
Sbjct: 1 MDENGDGAEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQTVEIDGKE 60
Query: 98 ADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL- 155
+W E F ++ S ALV V++++ T D++K W+ + Q +
Sbjct: 61 VKAQIWDTAGQERFRAVTSAYYRGAFGALV-VYDISRRGTFDSIKRWLDELTTQNDSTVA 119
Query: 156 -LCIGNKVDLLPGHPVHAEYRRRLLKRE 182
+ +GNK DL V E + + E
Sbjct: 120 RMLVGNKCDLESLREVSTEEGKAFAEEE 147
>gi|407043376|gb|EKE41918.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 204
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 49 RPGI---LIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLW 103
RP + ++IG S VGK ++++R ++ F D ++ S+ L+ T+N YT + +W
Sbjct: 4 RPALFKTILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVTVNGAQYT--LQIW 61
Query: 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW-------VPSIDLQKFEILL 156
HE +S V+ F++ + + + L+ W + + I +
Sbjct: 62 DTAGHERYSCVVTTFYRGSDCCVLCFDVTNRESFNHLEKWKNEFIDGANATNPASIPIYV 121
Query: 157 CIGNKVDLLP 166
+GNK+D P
Sbjct: 122 -VGNKIDCEP 130
>gi|303748|dbj|BAA02115.1| GTP-binding protein [Pisum sativum]
gi|738939|prf||2001457G GTP-binding protein
Length = 201
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG S+VGK +L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLIIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLHEIDRYANDSVCKLLVGNKCDLTENKV 130
Query: 170 VHAE 173
V +
Sbjct: 131 VQTQ 134
>gi|401410672|ref|XP_003884784.1| hypothetical protein NCLIV_051820 [Neospora caninum Liverpool]
gi|325119202|emb|CBZ54756.1| hypothetical protein NCLIV_051820 [Neospora caninum Liverpool]
Length = 202
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 11/153 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K+W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDRDSFNNVKNWMMEIDKYAMEGVSKLLVGNKCDLTS--- 127
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSS 202
+R++ EE D C ET +
Sbjct: 128 ------KRVVSFEEGKEFADSCNMRFIETSAKN 154
>gi|296825752|ref|XP_002850864.1| vacuolar protein sorting-associated protein 21 [Arthroderma otae
CBS 113480]
gi|238838418|gb|EEQ28080.1| vacuolar protein sorting-associated protein 21 [Arthroderma otae
CBS 113480]
Length = 274
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 25/192 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLVKAKHWVAELQRQASPGIVIALVGNKLDLTSS 135
Query: 168 HPVHAEYRRRLLKREESSADPDFCQSG-ISETEGSSLLGDEE-------PSWEIRRSCLE 219
A R +S PD G ET G++ DE+ PS + R+
Sbjct: 136 DGTSAAAR-------DSPRTPDGTNEGDEGETPGTNNGNDEQDDEQDGSPSGDARK---- 184
Query: 220 WCTEHRIEYIEA 231
T+ Y EA
Sbjct: 185 VSTQEASAYSEA 196
>gi|348557356|ref|XP_003464485.1| PREDICTED: ras-related protein Rab-12-like [Cavia porcellus]
Length = 248
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 49 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 108
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 109 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 162
>gi|145507987|ref|XP_001439943.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834300|emb|CAI44509.1| rab_C22 [Paramecium tetraurelia]
gi|124407149|emb|CAK72546.1| unnamed protein product [Paramecium tetraurelia]
Length = 210
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
+IIG S+VGK ILSR+ F+D + + + + + + +W E F
Sbjct: 15 VIIGDSSVGKSCILSRINGNTFKDNHEVTLGVDIATKILKVQGKIIKARIWDTAGQENFR 74
Query: 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDLLPGHP 169
+ +++VF++ + + + +K W I+ +K +I+L I NK DL+
Sbjct: 75 SITRSYYRGAIGIMLVFDMKNRESFENIKSWQQEINQYANEKIKIIL-IANKSDLMNKRE 133
Query: 170 VHAEYRRRLLKR 181
V E ++L K+
Sbjct: 134 VTTEEGQQLAKK 145
>gi|195396353|ref|XP_002056796.1| GJ16685 [Drosophila virilis]
gi|194146563|gb|EDW62282.1| GJ16685 [Drosophila virilis]
Length = 197
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG S VGK +++ R + F+D D + + +N V+LW E F
Sbjct: 8 LLIIGESGVGKSSLIRRFVENKFDDNHDVTIGMDFKSAIMNVDGIDYKVALWDTAGAERF 67
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLP 166
RSL S AL ++V+++ + +L L+ W+ +D ++ +GNK+D
Sbjct: 68 --RSLTPSFYRKALGAILVYDITNRESLVKLEAWLAELDSYSDNPNIAIIVVGNKID--- 122
Query: 167 GHPVHAEYRRRLLKREE 183
+ R++ REE
Sbjct: 123 --------QERVVDREE 131
>gi|399163137|gb|AFP33144.1| rab-1, partial [Caenorhabditis elegans]
Length = 204
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 13 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T + +K W+ ID E + L +GNK DL
Sbjct: 73 RTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEIDRYACENVNKLLVGNKCDLTAKRA 132
Query: 170 VHAE 173
V +
Sbjct: 133 VETQ 136
>gi|323451357|gb|EGB07234.1| hypothetical protein AURANDRAFT_69836 [Aureococcus anophagefferens]
Length = 198
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++L R + F ++ + TIN + +W E+F
Sbjct: 13 LLMIGDSAVGKTSLLLRYANDTFSSTFITTIGIDFKIKTINLDGKRVKLQIWDTAGQEQF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI----DLQKFEILLCIGNKVDLLPG 167
+ +V+V+++ D T ++++ W+ I D Q +IL +GNK D
Sbjct: 73 RTITRSYFRGAQGIVLVYDITDRGTFNSVRSWMAQINEHADGQVNKIL--VGNKCDNSSA 130
Query: 168 HPVHAEYRRRL 178
V A+ R+L
Sbjct: 131 RKVSADEGRKL 141
>gi|403265469|ref|XP_003924959.1| PREDICTED: ras-related protein Rab-12 [Saimiri boliviensis
boliviensis]
Length = 263
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 64 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 123
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 124 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 177
>gi|183231256|ref|XP_655064.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|169802558|gb|EAL49676.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
Length = 196
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108
+ I+ +G S+VGK I+ R ++ +F +++ + T+ + + + +W
Sbjct: 6 KQKIVFLGDSSVGKTCIIGRFMNGDFNTGYEATIGTDFSTKTMTFQNKSIQLQIWDTAGQ 65
Query: 109 EEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEI-LLCIGNKVD 163
E + RSL I D +A V+V+++ND + +++ W+ + +K EI L +GNK+D
Sbjct: 66 ERY--RSLIPSYIRDS-SAAVIVYDINDRQSFESVDKWIEDVRSKEKGEIFLFLVGNKLD 122
Query: 164 LLPGH 168
L GH
Sbjct: 123 L--GH 125
>gi|164658714|ref|XP_001730482.1| hypothetical protein MGL_2278 [Malassezia globosa CBS 7966]
gi|159104378|gb|EDP43268.1| hypothetical protein MGL_2278 [Malassezia globosa CBS 7966]
Length = 212
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D ST +K W+ I+ E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDVTDESTFANVKQWLQEIERYACEGVNKLLVGNKADLTNSKA 133
Query: 170 VHAEYRRRL 178
V E ++L
Sbjct: 134 VDFESAKQL 142
>gi|409046611|gb|EKM56091.1| hypothetical protein PHACADRAFT_257157 [Phanerochaete carnosa
HHB-10118-sp]
Length = 204
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F D+ S+ + TI+ + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFAEDAFTDSYLSTIGVDFKIRTIDLEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTIAAAYYRGAHGIIVVYDVTDKESYENVKGWLTEIDRYASEGVLKLILGNKSDL 125
>gi|358058494|dbj|GAA95457.1| hypothetical protein E5Q_02111 [Mixia osmundae IAM 14324]
Length = 384
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + TI T + +W E F
Sbjct: 144 LLLIGDSGVGKSCLLLRFADDSYSDSYISTIGVDFKIRTIELGGKTVKLQIWDTAGQERF 203
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D T +K W+ ID E + L +GNK DL
Sbjct: 204 RTITSSYYRGAHGIIVVYDVTDQDTFSNVKQWLQEIDRYACEGVDKLLVGNKSDL 258
>gi|281203215|gb|EFA77416.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 203
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R ++ D S+ + T+N T + +W E F
Sbjct: 11 ILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ +++V++ D + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAQGIILVYDCTDQDSFNNVKQWMGEIDRYACENVNKLLVGNKTDLV 126
>gi|221482114|gb|EEE20475.1| small GTP-binding protein domain-containing protein [Toxoplasma
gondii GT1]
Length = 230
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 11/160 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 39 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTVKLQIWDTAGQERF 98
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K+W+ ID E + L +GNK DL
Sbjct: 99 RTITSSYYRGAHGIIIVYDVTDRESFNNVKNWMMEIDKYAMEGVSKLLVGNKCDLTS--- 155
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEP 209
+R + EE D C ET + E+
Sbjct: 156 ------KRTVTYEEGKEFADSCNMRFIETSAKNAHNVEQA 189
>gi|76779772|gb|AAI06309.1| Rab3d protein [Xenopus laevis]
Length = 217
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK 94
RQ S + +LIIG+S+VGK + L R +F A S+ + T+
Sbjct: 8 RQPQKDAADQSFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRN 67
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ +W E + + ++++++++L + +A++ W I ++
Sbjct: 68 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDISNLESFNAVQDWATQIKTYSWDN 127
Query: 154 -ILLCIGNKVDLLPGHPVHAEYRRRL 178
+L +GNK DL + AE R+L
Sbjct: 128 AQVLLVGNKCDLEDDRVIAAEDGRKL 153
>gi|17558550|ref|NP_503397.1| Protein RAB-1 [Caenorhabditis elegans]
gi|351059221|emb|CCD67094.1| Protein RAB-1 [Caenorhabditis elegans]
Length = 205
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T + +K W+ ID E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEIDRYACENVNKLLVGNKCDLTAKRA 133
Query: 170 VHAE 173
V +
Sbjct: 134 VETQ 137
>gi|67472102|ref|XP_651915.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|50978608|dbj|BAD34971.1| EhRab7D protein [Entamoeba histolytica]
gi|56468706|gb|EAL46529.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449709825|gb|EMD49016.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 204
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 46 LEKRPGI---LIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADV 100
+ RP + ++IG S VGK ++++R ++ F D ++ S+ L+ T+N YT +
Sbjct: 1 MAGRPALFKAILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVTVNGAQYT--L 58
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW-------VPSIDLQKFE 153
+W HE +S V+ F++ + + + L+ W + +
Sbjct: 59 QIWDTAGHERYSCVVTTFYRGSDCCVLCFDVTNRDSFNHLEKWKNEFIDGANATNPASIP 118
Query: 154 ILLCIGNKVDLLP 166
I + +GNK+D P
Sbjct: 119 IYV-VGNKIDCEP 130
>gi|414587082|tpg|DAA37653.1| TPA: ypt-like protein isoform 1 [Zea mays]
gi|414587083|tpg|DAA37654.1| TPA: ypt-like protein isoform 2 [Zea mays]
Length = 208
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRA 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|268555746|ref|XP_002635862.1| C. briggsae CBR-RAB-1 protein [Caenorhabditis briggsae]
gi|308488626|ref|XP_003106507.1| CRE-RAB-1 protein [Caenorhabditis remanei]
gi|308253857|gb|EFO97809.1| CRE-RAB-1 protein [Caenorhabditis remanei]
Length = 205
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T + +K W+ ID E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEIDRYACENVNKLLVGNKCDLTAKRA 133
Query: 170 VHAE 173
V +
Sbjct: 134 VETQ 137
>gi|332026964|gb|EGI67060.1| Alpha- and gamma-adaptin-binding protein p34 [Acromyrmex
echinatior]
Length = 260
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269
+R L WC H+ E +E + D +G+ G+ER+ AL AHMW +VLK
Sbjct: 113 LRDKVLHWCLHHKFELVELEQTG---DSECDTEGNKYGIERIIEALHAHMWSNIVLK 166
>gi|198427811|ref|XP_002131619.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 206
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG VGK +I++R ++ F+ S + E L + K YT + +W E
Sbjct: 10 VVLIGDGGVGKSSIMNRFITGEFDGQSYHTIGVEFLTKNVEVEGKQYT--LQIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW------VPSIDLQKFEILLCIGNKVD 163
F P ++ + +ND + LK W I+ KF ++ +GNKVD
Sbjct: 68 RFKSLRTPFYRGADCCMLTYAVNDAQSFHNLKMWKQEFLYYADINDDKFPFVV-LGNKVD 126
Query: 164 L 164
+
Sbjct: 127 V 127
>gi|167382616|ref|XP_001736187.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901348|gb|EDR27431.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 203
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILI+G S VGK IL R + F++ S+ + +N T + +W E F
Sbjct: 12 ILIVGDSGVGKTAILQRYCNNTFDERYVSTIGVDFKPMILNLGERTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVD 163
+ TA+++V+++N+ +L + W ++ Q ++ +GNK D
Sbjct: 72 MNITAAYFRNTTAVIIVYDVNNRESLSKVYSWYGEVNEKTTQPNPVIFLVGNKKD 126
>gi|380023930|ref|XP_003695762.1| PREDICTED: ras-related protein Rab-18-B-like [Apis florea]
Length = 223
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG SNVGK +I+ R F + S+ + + T +++W E F
Sbjct: 13 LLMIGESNVGKSSIILRFTEDEFHENMQSTVGMDYRTKQVTIDGNTVKLAIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL-LCIGNKVDLLPGH 168
+ ++V+++ D T L+ W+ ++ K +I+ + +GNK+D LP
Sbjct: 73 RTLTPSYYRDGQGAILVYDVTDRITFMKLETWLNELNTYCNKTDIIKMVVGNKID-LPNR 131
Query: 169 PVHAEYRRRLLKREES 184
V E + +R ++
Sbjct: 132 EVSTEEGLQFARRHQT 147
>gi|440299778|gb|ELP92315.1| GTP-binding protein ryH1, putative [Entamoeba invadens IP1]
Length = 184
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 17/118 (14%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G S+VGK I+ R ++ +F + +S + NG TI + +W E +
Sbjct: 9 IVFLGDSSVGKTCIIGRFMTGDFNNGYESL--VCKNGKTI-------QLQIWDTAGQERY 59
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILL-CIGNKVDL 164
RSL I D A+V V+++ND T + + WV + +L+K I + +GNK+D+
Sbjct: 60 --RSLIPSYIRDSAAAVV-VYDVNDRQTFENVSRWVKDLKELEKGNIFVYLVGNKIDM 114
>gi|162463546|ref|NP_001105546.1| GTP-binding protein YPTM1 [Zea mays]
gi|466170|sp|P16976.2|YPTM1_MAIZE RecName: Full=GTP-binding protein YPTM1
gi|287833|emb|CAA44918.1| yptm1 [Zea mays]
Length = 208
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRA 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|123416423|ref|XP_001304889.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121886372|gb|EAX91959.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 191
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G+SNVGK ++L+R++ F + S++ + + + + D +W E +
Sbjct: 4 VVFLGNSNVGKTSLLTRIIQGEFNKYTVSTAGAAMQNYHYEIEGKSLDFQIWDTAGQEAY 63
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIGNKVDL 164
+ T ++V+++ D ++ D L+ W+ I I L +GNK DL
Sbjct: 64 KSLAANYLRDATFAIVVYSIIDRTSFDELESWIKMIHDSDPNIQYLLVGNKTDL 117
>gi|451852641|gb|EMD65936.1| hypothetical protein COCSADRAFT_198789 [Cochliobolus sativus
ND90Pr]
gi|451997104|gb|EMD89569.1| hypothetical protein COCHEDRAFT_1021897 [Cochliobolus
heterostrophus C5]
Length = 221
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 40 STDRASLEKRPG--------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI 91
S R +RPG ++++G S VGK +++ R + F+D +S+ TI
Sbjct: 2 SAGRMQQGQRPGGSRFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTI 61
Query: 92 ----NTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI 147
NT T +W E + + V+V+++ ++LD K WV +
Sbjct: 62 ALDENT---TVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKEL 118
Query: 148 DLQKFE--ILLCIGNKVDLLPGHP 169
Q E I+ GNK+DL+ P
Sbjct: 119 QRQANENIIIALAGNKLDLVTESP 142
>gi|340508734|gb|EGR34378.1| hypothetical protein IMG5_014070 [Ichthyophthirius multifiliis]
Length = 529
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK-YYTADV 100
+ A+ E I+++G +NVGK +L R + N + + + TI K V
Sbjct: 7 ENAAFEDTYKIVLVGDTNVGKTHLLKRFIKNNLACSVAPTIGVEFQAKTIQLKDGKIIKV 66
Query: 101 SLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLC 157
W E + SI S L AL +V+++ +T ++++ W+ I Q I++
Sbjct: 67 QFWDTAGQERYRSITSFHYRKALGAL-LVYDITKENTFNSVQKWIDEIKNQSSSDIIIML 125
Query: 158 IGNKVDLLPGHP 169
+GNK+DL+ +P
Sbjct: 126 VGNKLDLVQNNP 137
>gi|431896332|gb|ELK05748.1| Ras-related protein Rab-12 [Pteropus alecto]
Length = 246
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 47 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 106
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 107 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 160
>gi|66824201|ref|XP_645455.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|166208509|sp|P34143.2|RABC_DICDI RecName: Full=Ras-related protein RabC
gi|60473617|gb|EAL71558.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 196
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY--YTADVSLWMAHLHE 109
I+++G S VGK +IL R F + + N TI K T + LW E
Sbjct: 9 IILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPG 167
F + +++V+++ D + + K+WV I+ Q I++ +GNK D++
Sbjct: 69 RFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQ 128
Query: 168 HPVHAEYRRRLLKR 181
V E + + ++
Sbjct: 129 RKVTFEQGQEMAEQ 142
>gi|145510424|ref|XP_001441145.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834242|emb|CAI44492.1| rab_C48 [Paramecium tetraurelia]
gi|124408384|emb|CAK73748.1| unnamed protein product [Paramecium tetraurelia]
Length = 205
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWM 104
S K ++++G S VGK ++L R + +F++ + TI +W
Sbjct: 2 SQTKEIKVVLLGVSGVGKSSLLYRFVENDFQEKGQPTLGAAFQSKTILIDGKALKFQIWD 61
Query: 105 AHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNK 161
E++ +I L D AL +V+++NDL + + +K W + Q +I + IGNK
Sbjct: 62 TAGQEKYKAILPLYYRDAKVAL-LVYDVNDLQSFEGVKEWFQQLQDQGPIDQIRVIIGNK 120
Query: 162 VDL 164
DL
Sbjct: 121 CDL 123
>gi|378756664|gb|EHY66688.1| rab-protein 10 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG SNVGK +IL R + FE ++ + I ++ +W E F
Sbjct: 10 LLIIGESNVGKTSILQRFIDNKFEKTFSTTIGIDFRSKAIKVDGKEIELQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDLLPG 167
+ + + F+L S+ +L W+ I +K + L +GNK DLL G
Sbjct: 70 FSITRSYYRGSDGIFLTFDLTSESSFASLTKWIGEIKEKVDEKVPVFL-LGNKKDLLKG 127
>gi|328865966|gb|EGG14352.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 200
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY--YTADVSLWMAHLHE 109
I+++G S VGK IL R F + + N TI K T + +W E
Sbjct: 11 IILVGESAVGKSCILVRFTDNTFNTHFAPTLGVDFNVKTIRNKETGQTVKLQIWDTAGQE 70
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPG 167
F + +++V+++ D+ + + + W+ I+ Q I++ +GNK+D+
Sbjct: 71 RFRSITQTFYRGSHGVILVYDITDVKSFERCRDWIADINQYTQNGMIIVLVGNKIDMTAQ 130
Query: 168 HPVHAEYRRRL-----LKREESSADPD 189
V E + L +K E+SA +
Sbjct: 131 RKVSFEQGKALAEELNIKFFETSAKEN 157
>gi|156035889|ref|XP_001586056.1| hypothetical protein SS1G_13149 [Sclerotinia sclerotiorum 1980]
gi|154698553|gb|EDN98291.1| hypothetical protein SS1G_13149 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 221
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 21 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQER 80
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E I+ GNK+DL+
Sbjct: 81 YKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIIIALAGNKLDLVTEQ 140
Query: 169 P 169
P
Sbjct: 141 P 141
>gi|396082020|gb|AFN83633.1| GTP-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 198
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSSNVGK T++S+ L + + + L TI + + LW E F
Sbjct: 7 IVFLGSSNVGKTTLMSQYLHQEVQRSYGPTIGLDFVSTTIVVSGHRVRLQLWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-----DLQKFEILLCIGNKVDL 164
+ + ++VF++ D S+ + + HW+ ++ L +L +GNK DL
Sbjct: 67 NSIIPNYTRNSFLAIIVFDMKDKSSFERIDHWINTLSKTSESLGSKARILVVGNKRDL 124
>gi|237843001|ref|XP_002370798.1| RAS small GTpase, putative [Toxoplasma gondii ME49]
gi|211968462|gb|EEB03658.1| RAS small GTpase, putative [Toxoplasma gondii ME49]
gi|221502504|gb|EEE28231.1| Rab family protein [Toxoplasma gondii VEG]
Length = 202
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K+W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDRESFNNVKNWMMEIDKYAMEGVSKLLVGNKCDLTS--- 127
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSS 202
+R + EE D C ET +
Sbjct: 128 ------KRTVTYEEGKEFADSCNMRFIETSAKN 154
>gi|407924376|gb|EKG17428.1| Ras GTPase [Macrophomina phaseolina MS6]
Length = 276
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G + VGK +++ R ++ +F++ + + N T +W E F
Sbjct: 18 LVLLGEAAVGKSSLVMRFVNNDFQENKEPTIGAAFLTQKCNLPTRTIKFEIWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ + A ++V+++ S+L +HWV + Q ++ +GNK DL+ G
Sbjct: 78 ASLAPMYYRNAQAALVVYDITKASSLTKAQHWVAELQRQASPGIVIALVGNKADLVEGDT 137
Query: 170 VHAE 173
AE
Sbjct: 138 GAAE 141
>gi|170284608|gb|AAI61194.1| LOC100145521 protein [Xenopus (Silurana) tropicalis]
Length = 422
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL +G+S+VGK + L R+ +F ++ + TIN + LW E F
Sbjct: 238 ILFVGNSSVGKTSFLHRVHDGSFHQGYSATVGIDCRIKTINVDDKRFALQLWDTAGQERF 297
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVD 163
+ + LV+++++ T DA+++W+ I Q I+L +GNK+D
Sbjct: 298 HSITEHFFRKADGLVIMYDVTSKDTFDAVQYWLSCITNKTQDDIIILLMGNKID 351
>gi|385302406|gb|EIF46539.1| rab gtpase [Dekkera bruxellensis AWRI1499]
Length = 208
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 40 STDRASLEKRP---GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY- 95
STD AS E + ++++G S VGK +I+ R + +F D +S+ TI+
Sbjct: 2 STDIASDEHKFVQFKLVLLGESAVGKSSIVQRFVKDSFNDFKESTIGAAFLTQTIDLDSD 61
Query: 96 YTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E + S+ S+ + +ALV V+++ ++LD K+W+ + Q
Sbjct: 62 TTVKFEIWDTAGQERYRSLASIYYRNAQSALV-VYDITQKASLDKAKYWIKELQKQASNN 120
Query: 154 -ILLCIGNKVDLLPGHPVHAE 173
++ +GNK DL + E
Sbjct: 121 IVIALVGNKTDLEEERQIPTE 141
>gi|218195930|gb|EEC78357.1| hypothetical protein OsI_18114 [Oryza sativa Indica Group]
gi|222629897|gb|EEE62029.1| hypothetical protein OsJ_16811 [Oryza sativa Japonica Group]
Length = 206
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D S+ + TI T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYASDSVCKLLVGNKCDLVDSKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VDTE 134
>gi|123480122|ref|XP_001323216.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121906076|gb|EAY10993.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 195
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+ +IG +NVGK +I+ R S F + + + TI K +++W E+F
Sbjct: 14 VPLIGDANVGKTSIVGRFTSERFTGNTTPTVGVSTAQVTIKNKDRDVKLTIWDTAGQEKF 73
Query: 112 SIRSL-PI-SDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQ-KFEILLCIGNKVDL 164
RSL P+ + + L++VF++ + + + + WV + D+ K I LC NK+DL
Sbjct: 74 --RSLVPLYTRHASLLILVFDITNEESFNGCEDWVTKVRGDMGIKCPIFLC-ANKIDL 128
>gi|52353602|gb|AAU44168.1| putative rab1 small GTP-binding protein [Oryza sativa Japonica
Group]
Length = 205
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D S+ + TI T + +W E F
Sbjct: 10 LLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL+
Sbjct: 70 RTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYASDSVCKLLVGNKCDLVDSKV 129
Query: 170 VHAE 173
V E
Sbjct: 130 VDTE 133
>gi|340055447|emb|CCC49766.1| Rab11A GTPase [Trypanosoma vivax Y486]
Length = 219
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G S VGK +++R + F + ++ + +I + A V +W E F
Sbjct: 10 VVIVGDSGVGKSNLMTRYTANEFSQDTPATIGVEFMTKSIKIEGRDAKVQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I V+V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAVLVYDITNQTSFDSIPTWLQ--ELRAFVPATCSIFLIGNKCDL 124
>gi|146079278|ref|XP_001463744.1| putative small GTP-binding protein Rab11 [Leishmania infantum
JPCM5]
gi|398011473|ref|XP_003858932.1| small GTP-binding protein Rab11, putative [Leishmania donovani]
gi|134067831|emb|CAM66111.1| putative small GTP-binding protein Rab11 [Leishmania infantum
JPCM5]
gi|322497143|emb|CBZ32214.1| small GTP-binding protein Rab11, putative [Leishmania donovani]
Length = 208
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 17/156 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +++R + F + S+ + ++ + A + +W E F
Sbjct: 10 IVLIGDSGVGKSNLMTRYTTNEFNQETPSTIGVEFMTKSVKIQSRDAKIQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDLLPG 167
S I ++V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSIPTWLQ--ELRVFVPATCCIFLIGNKCDL--- 124
Query: 168 HPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203
R++K+E +AD ++G+S E S+L
Sbjct: 125 ------EHLRVVKKE--AADRFARENGLSFLETSAL 152
>gi|330801036|ref|XP_003288537.1| Rab GTPase [Dictyostelium purpureum]
gi|325081440|gb|EGC34956.1| Rab GTPase [Dictyostelium purpureum]
Length = 197
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY--YTADVSLWMAHLHE 109
I+++G S VGK +IL R F + + N TI K T + LW E
Sbjct: 10 IILVGESGVGKSSILVRFTDNTFTPHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQE 69
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPG 167
F + +++V+++ D + + K+WV I + Q I++ +GNK DL
Sbjct: 70 RFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQNTQDGMIIILVGNKSDLASQ 129
Query: 168 HPVHAEYRRRLLKR 181
V E +++ ++
Sbjct: 130 RKVTFEQGQQMAEQ 143
>gi|167376716|ref|XP_001734114.1| GTP-binding protein YPT1 [Entamoeba dispar SAW760]
gi|165904478|gb|EDR29694.1| GTP-binding protein YPT1, putative [Entamoeba dispar SAW760]
Length = 206
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L RL F+ +S + + I + +W A E F
Sbjct: 8 ILLIGESGVGKTAMLQRLTQGTFDGIYTASVGVDLKTKVIKINEEEITMEIWDAAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL-QKFEILLCIGNKVDLLPGHPV 170
+ A ++VF+L D ++ + + +W+ ++ I+ +GNK DL V
Sbjct: 68 RSVTQSYYRGTHAAIIVFDLTDKTSFEMVGYWLSEMEKDNNHPIIALVGNKSDLSNARTV 127
Query: 171 HAEYRR 176
E R
Sbjct: 128 PIEVIR 133
>gi|403417830|emb|CCM04530.1| predicted protein [Fibroporia radiculosa]
Length = 219
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F D+ S+ + TI + + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFAEDAFTDSYLSTIGVDFKIRTIELEGKMVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ +V+V+++ D + D +K W+ I+ E + L IGNK DL+
Sbjct: 71 RTIAAAYYRGAHGIVVVYDVTDAESFDNVKGWLQEIERYASENVKKLLIGNKSDLV 126
>gi|350538375|ref|NP_001233828.1| small GTP-binding protein [Solanum lycopersicum]
gi|1053065|gb|AAA80679.1| small GTP-binding protein [Solanum lycopersicum]
Length = 202
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANESVCKLLVGNKCDLVENKV 130
Query: 170 VHAEYRRRL 178
V + + L
Sbjct: 131 VDTQMGKAL 139
>gi|402219698|gb|EJT99771.1| small monomeric GTPase [Dacryopinax sp. DJM-731 SS1]
Length = 217
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 34 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRKTTITFSIWDLGGQREF 91
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLL 165
+ LP +S+ AL+ +F+L+ STL+++K W + K I IG K DL
Sbjct: 92 -VNMLPLVSNDAVALLFMFDLSRKSTLNSVKEWYRQARGFNKSAIPFLIGTKFDLF 146
>gi|54020751|ref|NP_001005621.1| RAB3D, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|49257746|gb|AAH74589.1| RAB3D, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 216
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK 94
RQ S + +LIIG+S+VGK + L R +F A S+ + T+
Sbjct: 8 RQPQKDAADQSFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRN 67
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ +W E + + ++++++++L + +A++ W I ++
Sbjct: 68 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDISNLESFNAVQDWATQIKTYSWDN 127
Query: 154 -ILLCIGNKVDLLPGHPVHAEYRRRL 178
+L +GNK DL + AE R+L
Sbjct: 128 AQVLLVGNKCDLEDDRVIPAEDGRKL 153
>gi|67476106|ref|XP_653656.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56470631|gb|EAL48270.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790130|dbj|BAD82861.1| small GTPase EhRabX13 [Entamoeba histolytica]
gi|449708841|gb|EMD48222.1| small GTPase EhRabX13, putative [Entamoeba histolytica KU27]
Length = 207
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
Q + +T+R + K ++++G S+VGK +++ + F S+S + G TK
Sbjct: 3 QHVRNTNRLTPLK---LIVVGDSSVGKTSLIQMFANNQF-----SNSVVSTVGIDFLTKR 54
Query: 96 YTAD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
Y D V +W E+F + V+++++ + ST DA+ +WV ++
Sbjct: 55 YEVDGTTYKVQIWDTAGQEKFRTIITSYYRGVQGAVLIYDVTNKSTFDAINYWVKNVQEF 114
Query: 151 KFEIL--LCIGNKVDLLPGHPVHAEYRRRL 178
+++ + +GNK DL V E + L
Sbjct: 115 GEQVIGRILVGNKTDLEQHRTVSTEMGQSL 144
>gi|342182703|emb|CCC92182.1| putative Rab11A GTPase [Trypanosoma congolense IL3000]
Length = 216
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD--VSLWMAHLHE 109
++I+G S VGK +++R + F + D+ + + V T + K D V +W E
Sbjct: 10 VVIVGDSGVGKSNLMTRYTANEF--SQDTPATIGVEFMTKSIKIEGRDTKVQIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
F S I ++V+++ + S+ DA+ W+ +L+ F C IGNK DL
Sbjct: 68 RFRAISRSIYHGAKGAMLVYDITNQSSFDAIPTWLQ--ELRAFVPATCSIFLIGNKCDL 124
>gi|326435249|gb|EGD80819.1| hypothetical protein PTSG_01405 [Salpingoeca sp. ATCC 50818]
Length = 195
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++GS +VGK +++ R ++ +F + S+ IN +T + +W E F
Sbjct: 8 VVLVGSQDVGKTSLVVRYVNNDFSEKVSSTVGASFFKHKINAGKHTIKLQIWDTAGEERF 67
Query: 112 SIRSLPISDQ-LTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGH 168
LP+ + +A ++V+++ + +LD W+ + + + IL + NK+DL+
Sbjct: 68 H-SMLPMYYRGASAALLVYDVTNPKSLDDALDWINELRDNCSEHLILCLVANKMDLVEEG 126
Query: 169 PVHAEYRRRLLKREESSADPDFCQ------SGISET------EGSSLLGDEEPS 210
E RRL + D F Q SGISET E L G+E PS
Sbjct: 127 CDAIEEGRRLAQEN----DALFHQTSAKTGSGISETFVDIAKELIGLTGEETPS 176
>gi|395857340|ref|XP_003801056.1| PREDICTED: ras-related protein Rab-12 [Otolemur garnettii]
Length = 234
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 35 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 94
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 95 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 148
>gi|167387855|ref|XP_001738336.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898510|gb|EDR25350.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 201
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
+ D + +L++G S+VGK +I R + FED SS G K T D
Sbjct: 2 AADEKQKHRNIKVLLLGESSVGKTSITQRYIDNTFEDIYLSSV-----GVDFKFKEITKD 56
Query: 100 -----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK-FE 153
+ +W E F + A +VF++N+ S+ ++ W I ++ ++
Sbjct: 57 NELIRLQIWDTAGQERFQSIARSYYRNADAAFIVFDINNESSFKKVQFWYNEISQEEAYQ 116
Query: 154 ILLCIGNKVDL 164
+++ +GNK DL
Sbjct: 117 LVILVGNKCDL 127
>gi|167391375|ref|XP_001739748.1| GTP-binding protein ypt7 [Entamoeba dispar SAW760]
gi|165896450|gb|EDR23858.1| GTP-binding protein ypt7, putative [Entamoeba dispar SAW760]
Length = 190
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK +++ R + F+ ++ + L + K Y ++ +W HE
Sbjct: 4 LILIGESGVGKTSLIQRYVMNKFDSTYKTTIGCDFLAKTVYVENKEY--NLQIWDTAGHE 61
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP----SIDLQKFEILLCIGNKVDLL 165
+FS ++VF++ + S+ A+ W+ +++ + I++C GNKVD
Sbjct: 62 KFSSMVSSFYRGSDGAIIVFDVTNTSSFTAIDTWINEYSRALNGKDVPIIIC-GNKVDCQ 120
Query: 166 P 166
P
Sbjct: 121 P 121
>gi|426232592|ref|XP_004010305.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Ovis
aries]
Length = 315
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTQKCGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V ++G++
Sbjct: 104 SWLPEVMILVCDRVS----------------------------ENGVN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|15229836|ref|NP_187779.1| Ras-related protein RABD1 [Arabidopsis thaliana]
gi|75338904|sp|Q9ZRE2.1|RABD1_ARATH RecName: Full=Ras-related protein RABD1; Short=AtRABD1; AltName:
Full=Ras-related protein ATFP8
gi|6671929|gb|AAF23189.1|AC016795_2 putative GTP-binding protein (ATFP8) [Arabidopsis thaliana]
gi|4097557|gb|AAD00111.1| ATFP8 [Arabidopsis thaliana]
gi|26451349|dbj|BAC42775.1| putative GTP-binding protein ATFP8 [Arabidopsis thaliana]
gi|28973343|gb|AAO63996.1| putative GTP-binding protein (ATFP8) [Arabidopsis thaliana]
gi|332641569|gb|AEE75090.1| Ras-related protein RABD1 [Arabidopsis thaliana]
Length = 205
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R + D+ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ ++ + + +K W+ ID E + L IGNK D++
Sbjct: 71 RTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKV 130
Query: 170 VHAEYRRRL 178
V E R L
Sbjct: 131 VSTETGRAL 139
>gi|398012080|ref|XP_003859234.1| small Rab GTP binding protein, putative [Leishmania donovani]
gi|38146267|gb|AAR11496.1| Rab5b [Leishmania donovani]
gi|322497448|emb|CBZ32522.1| small Rab GTP binding protein, putative [Leishmania donovani]
Length = 211
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 34 GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT 93
GR + ++ ++ ++++G S VGK +++ RL+ F + +S+ +T N
Sbjct: 5 GRAPTTTAGASASTRKFKLVLLGESGVGKSSVVQRLMKNAFSEKLNSTVGASFFRYTCNV 64
Query: 94 KYYTA-DVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151
TA +W E F S+ S+ ALV VF++ T + ++W+ +
Sbjct: 65 DDDTAVHFDIWDTAGQERFKSLASMYYRGAAAALV-VFDIVSADTFEKARYWIRELQANS 123
Query: 152 FE-ILLCIGNKVDL 164
E I++ +GNK DL
Sbjct: 124 PETIVMLVGNKKDL 137
>gi|410908297|ref|XP_003967627.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34-like
[Takifugu rubripes]
Length = 321
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 60/186 (32%)
Query: 89 WTINTKYYTADVSLWMA----HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV 144
W IN KYYTADVSL + H+ E I+ A ++ + L+ L W+
Sbjct: 54 WCINNKYYTADVSLCVVPSIFHMSSE-------IAQSSQAFIVYIDSKAKGGLEKLNLWI 106
Query: 145 PSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204
P ++ E+L+ + +V C+ G++
Sbjct: 107 PIVEELSPEVLILVCERV----------------------------CEDGVT-------- 130
Query: 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNV-DFDKCLSIDGDSQGVERLYGALSAHMW 263
R +WC H E +E + D D +S G++R+ AL+A++W
Sbjct: 131 ---------RHEAQQWCLGHAFELVELNPQELPDEDDDFP---ESTGIKRIIQALNANVW 178
Query: 264 PGMVLK 269
+++K
Sbjct: 179 SNVMMK 184
>gi|1710015|sp|P51152.1|RAB12_CANFA RecName: Full=Ras-related protein Rab-12
gi|437985|emb|CAA80471.1| Rab12 protein [Canis lupus familiaris]
Length = 208
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 9 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 69 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 122
>gi|206598099|gb|ACI15910.1| Rab1 [Bodo saltans]
Length = 205
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+N T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTESYISTIGVDFKIRTLNLDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDVESFNNVKTWLSEIDKYASENVNKLLVGNKSDLIAKKA 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|89027972|gb|ABD59352.1| small GTP binding protein Rab1A [Saccharum officinarum]
Length = 207
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R ++ D+ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEMEGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNVKQWLSEIDRYANDSVCKLLVGNKCDLAESRT 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|47216041|emb|CAG11372.1| unnamed protein product [Tetraodon nigroviridis]
Length = 197
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY 96
E+D D + E+ I+ +G S VGK ++ R L + S+ L + T +
Sbjct: 10 ELDQNDYDAAEQ-VKIICLGDSAVGKSKLMERFLMDKYRPHQLSTYALTLYKHTATVENK 68
Query: 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILL 156
T V W E F + A +MVF++ T L +W + + EI
Sbjct: 69 TVAVDFWDTAGQERFQSMHPSYYHKAHACIMVFDVQRKITYKNLANWYKELREYRPEIPC 128
Query: 157 C-IGNKVDL 164
C + NK+D+
Sbjct: 129 CVVANKIDV 137
>gi|392574050|gb|EIW67187.1| hypothetical protein TREMEDRAFT_40402 [Tremella mesenterica DSM
1558]
Length = 205
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + TI + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T +K W+ ID E + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDRDTFTNVKQWLQEIDRYAVEGVNKLLVGNKSDLTTKKV 131
Query: 170 V-HAEYR 175
V H E +
Sbjct: 132 VEHNEAK 138
>gi|5926718|dbj|BAA84640.1| PRA2 [Pisum sativum]
Length = 233
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 36 QEMDSTDRASLEKRP----GILIIGSSNVGKRTILSRLLSVN--FEDASDSSSELLVNGW 89
QEM+ + L+++ +++IG S VGK ILSR F+ S E
Sbjct: 3 QEMNGVEAEKLQEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTKTV 62
Query: 90 TINTKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
TIN K A + W E + ++ S L A+ +V+++ T D + WV +
Sbjct: 63 TINGKLIKAQI--WDTAGQERYRAVTSAYYRGALGAM-LVYDITKRQTFDHVARWVEELR 119
Query: 149 LQKFE--ILLCIGNKVDLLPGHPVHAE 173
+++ IGNK DL+ V E
Sbjct: 120 SHADGSIVIMLIGNKGDLVDQRGVQTE 146
>gi|453089344|gb|EMF17384.1| ras-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 225
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +++ R + F+D +S+ + L ++ + T +W E
Sbjct: 22 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDEQ-TTVKFEIWDTAGQE 80
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
+ + V+V+++ ++LD K WV + Q E I+ GNK DL+
Sbjct: 81 RYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANENIIIALAGNKADLVAE 140
Query: 168 HP 169
P
Sbjct: 141 QP 142
>gi|427786685|gb|JAA58794.1| Putative rab subfamily protein of small gtpase [Rhipicephalus
pulchellus]
Length = 231
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G+ VGK ++++R F + + +N + LW E F
Sbjct: 14 VVLLGALGVGKTSLITRYSQKKFIGTTSPTIGASFTTLRVNVGDAKVRIQLWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ + A ++ +++ S+ +A+K WV + ++++ +L+ +GNK DL+
Sbjct: 74 RAMAPLYYRKANAAIVAYDITSASSFEAMKQWVLELRRNVEEAIVLVLVGNKCDLMQHRA 133
Query: 170 VHAEYRRRLLK 180
V E R +
Sbjct: 134 VDREMAERYAR 144
>gi|66825345|ref|XP_646027.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|74834150|sp|O76173.1|RAB1C_DICDI RecName: Full=Ras-related protein Rab-1C
gi|3273209|dbj|BAA31150.1| Rab1C [Dictyostelium discoideum]
gi|60474000|gb|EAL71937.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 201
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R F D+ S+ + TI + +W E F
Sbjct: 36 ILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERF 95
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ L++V+++ + + +++K W+ ID+ +F + L +GNK DL
Sbjct: 96 KTITTSYYRGAHGLIIVYDITSMDSFNSIKRWL--IDVDRFASPSVLKLIVGNKCDLNSK 153
Query: 168 HPVHAEYRRRL 178
V + ++
Sbjct: 154 RAVDFKIAKKF 164
>gi|441656173|ref|XP_004091101.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-4B
[Nomascus leucogenys]
Length = 181
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + +N T + +W E F
Sbjct: 11 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDLLPGH 168
+ ++V+++ T ++L W+ ++ ++LC GNK DL P
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC-GNKKDLDPER 129
Query: 169 PVHAEYRRRLLKREESSADPDFCQSGISETEGS 201
V R + E DP+ SGI + S
Sbjct: 130 EVTFLEASRFAQ-ENGELDPERMGSGIQYGDAS 161
>gi|301612636|ref|XP_002935817.1| PREDICTED: hypothetical protein LOC100145521 [Xenopus (Silurana)
tropicalis]
Length = 1124
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL +G+S+VGK + L R+ +F ++ + TIN + LW E F
Sbjct: 940 ILFVGNSSVGKTSFLHRVHDGSFHQGYSATVGIDCRIKTINVDDKRFALQLWDTAGQERF 999
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVD 163
+ + LV+++++ T DA+++W+ I Q I+L +GNK+D
Sbjct: 1000 HSITEHFFRKADGLVIMYDVTSKDTFDAVQYWLSCITNKTQDDIIILLMGNKID 1053
>gi|320580341|gb|EFW94564.1| GTPase [Ogataea parapolymorpha DL-1]
Length = 849
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 55 IGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHEEF- 111
+G S VGK +I+ R + +F D+ +S+ + L I+ T +W E +
Sbjct: 661 LGESAVGKSSIVHRFVKDSFTDSRESTIGAAFLTQTIQIDANT-TVKFEIWDTAGQERYR 719
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
S+ S+ + ALV VF++ S+LD K+W+ + Q ++ +GNK+DL
Sbjct: 720 SLASMYYRNAQAALV-VFDITQESSLDKAKYWIKELQKQASSGIVIALVGNKLDL 773
>gi|448087841|ref|XP_004196426.1| Piso0_005889 [Millerozyma farinosa CBS 7064]
gi|359377848|emb|CCE86231.1| Piso0_005889 [Millerozyma farinosa CBS 7064]
Length = 223
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + +F+D +S+ + L + K T +W E
Sbjct: 19 LVLLGESAVGKSSIVHRFVKNSFDDMRESTIGAAFLTQSVKLPEKSATVKFEIWDTAGQE 78
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLC-IGNKVDLLPG 167
+ + A + V+++ S+ + + W+ + Q E I +C +GNK D+
Sbjct: 79 RYKSLAPMYYRNANAALCVYDITSRSSFNRAQEWIKELKKQAPENITICLVGNKTDMQEE 138
Query: 168 HPVHAE 173
V+ E
Sbjct: 139 REVNQE 144
>gi|326473840|gb|EGD97849.1| vacuolar protein sorting-associated protein 21 [Trichophyton
tonsurans CBS 112818]
gi|326478354|gb|EGE02364.1| vacuolar protein sorting-associated protein 21 [Trichophyton
equinum CBS 127.97]
Length = 274
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL G
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGNKLDLTNG 135
Query: 168 HPVHAEYRRRLLKREESSADPDFCQSGISET-EGSSLLGD 206
A S++DP Q +E EG + +G+
Sbjct: 136 DGTSA-----------SASDPAQAQDPANEGEEGETQVGN 164
>gi|399217674|emb|CCF74561.1| unnamed protein product [Babesia microti strain RI]
Length = 272
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK ++L R F D+ S+ + T+N + + +W E F
Sbjct: 82 ILIIGDSGVGKSSLLLRFSDDTFNDSFLSTIGVDFKIKTVNIDKKSVKLQIWDTAGQERF 141
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ +++V+++ + + D +K W+ D++K+ + +GNK+D+
Sbjct: 142 RTITSSYYKGAQGIIVVYDVTNKESFDNVKKWLD--DIEKYAAPSVTKMLVGNKIDVEAN 199
Query: 168 HPVHAEYRRRLLKREESSADPDFCQSGISET 198
V + + K +S + F +S E+
Sbjct: 200 RQV----KSQTAKDYATSQNMTFIESSAKES 226
>gi|340904912|gb|EGS17280.1| rab small monomeric GTPase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 205
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + LW E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVMVDDRQVT--MQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
F + V+VF++N+ + DAL W D + F ++ +GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVNNAKSFDALDSWRDEFLIQASPRDPENFPFVV-LGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQS--GIS--ETEGSSLLGDEEPSWEIRRSCL 218
D+ E +R++ + + FCQS GI ET + EE I R+ L
Sbjct: 128 DV--------EESKRVISTKRAQT---FCQSKGGIPYFETSAKEAINVEEAFQVIARNAL 176
>gi|393248157|gb|EJD55664.1| ras-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 367
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD---VSLWMAHLH 108
++IIGSS GK ++ ++ ++ F + ++ T+ + + +W
Sbjct: 6 LVIIGSSGTGKTSLRTQYIAGRFSTSYKATIGADFFARTLPHHRIAGEQVSLQIWDTAGQ 65
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW-------VPSIDLQKFEI-LLCIGN 160
E FS S A+++VF++N TL AL++W P D + + + +GN
Sbjct: 66 ERFSSLSRAFFRGADAVLLVFDVNQPETLQALRNWWSTFRDYAPVPDDEAYNFCTVVVGN 125
Query: 161 KVDLLP-----GHPV 170
K DL+P G PV
Sbjct: 126 KTDLVPATLAAGKPV 140
>gi|407036472|gb|EKE38178.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 190
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK +++ R + FE + + L + K Y ++ +W HE
Sbjct: 4 LILIGESGVGKTSLIQRYVMNKFEPTYKITIGCDFLAKTVYVENKEY--NLQIWDTAGHE 61
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP----SIDLQKFEILLCIGNKVDLL 165
+FS ++VF++ + S+ A+ W+ +++ + I++C GNKVD
Sbjct: 62 KFSSMVSSFYRGSDGAIIVFDVTNTSSFTAIDTWISEYSRALNGKDVPIIIC-GNKVDCQ 120
Query: 166 P 166
P
Sbjct: 121 P 121
>gi|397498900|ref|XP_003820211.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-41 [Pan
paniscus]
Length = 222
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN 92
FG + + ++ SL K +L +G +VGK +I+SR + +F A ++ + T+
Sbjct: 16 FGLEAAERSEYQSLCKSK-LLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMY 74
Query: 93 TKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151
+ + LW E F S+ I D A+V V+++ ++++ WV + ++
Sbjct: 75 LEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVV-VYDITNINSFKETDKWVEHVXAER 133
Query: 152 FE--ILLCIGNKVDLLPGHPVHAE 173
+ +++ +GNK+DL V AE
Sbjct: 134 GDDVVIMLLGNKIDLDNKRQVTAE 157
>gi|146080635|ref|XP_001464048.1| putative small Rab GTP binding protein [Leishmania infantum JPCM5]
gi|134068138|emb|CAM66423.1| putative small Rab GTP binding protein [Leishmania infantum JPCM5]
Length = 211
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 34 GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT 93
GR + ++ ++ ++++G S VGK +++ RL+ F + +S+ +T N
Sbjct: 5 GRAPTTTAGASASTRKFKLVLLGESGVGKSSVVQRLMKNAFSEKLNSTVGASFFRYTCNV 64
Query: 94 KYYTA-DVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151
TA +W E F S+ S+ ALV VF++ T + ++W+ +
Sbjct: 65 DDDTAVHFDIWDTAGQERFKSLASMYYRGAAAALV-VFDIISADTFEKARYWIRELQANS 123
Query: 152 FE-ILLCIGNKVDL 164
E I++ +GNK DL
Sbjct: 124 PETIVMLVGNKKDL 137
>gi|448083219|ref|XP_004195336.1| Piso0_005889 [Millerozyma farinosa CBS 7064]
gi|359376758|emb|CCE87340.1| Piso0_005889 [Millerozyma farinosa CBS 7064]
Length = 223
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + F+D +S+ + L + K T +W E
Sbjct: 19 LVLLGESAVGKSSIVHRFVKNTFDDMRESTIGAAFLTQSVKLPEKSATVKFEIWDTAGQE 78
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLC-IGNKVDLLPG 167
+ + A + V+++ S+ + + W+ + Q E I +C +GNK D+
Sbjct: 79 RYKSLAPMYYRNANAALCVYDITSRSSFNRAQEWIKELKKQAPENITICLVGNKTDMQEE 138
Query: 168 HPVHAE 173
V+ E
Sbjct: 139 REVNQE 144
>gi|325193482|emb|CCA27798.1| AlNc14C693G12406 [Albugo laibachii Nc14]
Length = 253
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLS-VNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110
+LI G+S VGK+T LS L V ++ + + +L ++ + TKYY+ADV + + L +
Sbjct: 5 LLIAGNSRVGKKTFLSNLQDFVKKKNQTSAEDDLTLH---LETKYYSADVKIDVCTLPDN 61
Query: 111 FSIRSL-PISDQ-LTALVMVFNLNDLSTL 137
FS S P+ ++ ++ V N ND ST
Sbjct: 62 FSADSCRPVFEKTYEGIIFVINRNDRSTF 90
>gi|167375586|ref|XP_001733685.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165905084|gb|EDR30177.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 227
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 40 STDRASLEKRP-GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTA 98
+T+ +E++P +L++G VGK ++ + +N ++ D S + IN
Sbjct: 31 NTNIKKIEEKPFKVLMVGDEGVGKTCLVKQF--INKKNKEDGKSNICYTK-IINISGDDI 87
Query: 99 DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILL 156
+ +W ++ S+ S + +++VF+++D +T +++K W+ + K I
Sbjct: 88 VLQVWDFESKQQDSMMSRSYYEGCNVVIVVFDISDRTTYESVKGWLKDVGYYAPKDIIKY 147
Query: 157 CIGNKVDLLPGHPVHAEYRRRLLKRE 182
+GNK DL V ++ L KRE
Sbjct: 148 LVGNKTDLAANRIVSSQEAEDLAKRE 173
>gi|50311935|ref|XP_455999.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645135|emb|CAG98707.1| KLLA0F20471p [Kluyveromyces lactis]
Length = 212
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
++ I+ +G VGK ++++R + F+D ++ + T+ T + LW
Sbjct: 10 RKYKIVFLGEQGVGKTSLITRFMYDTFDDNYQATIGIDFLSKTMYLDDKTIRLQLWDTAG 69
Query: 108 HEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNK 161
E F RSL I D A+V V+++ + + + + W+ + +++ E IL+ +GNK
Sbjct: 70 QERF--RSLIPSYIRDSHVAIV-VYDVTNRKSFEYIDKWIEDVKMERGEENVILVIVGNK 126
Query: 162 VDLLPGHPVHAEYRRR 177
DL+ V E R
Sbjct: 127 SDLVEERQVSTEEGER 142
>gi|50082751|gb|AAT70070.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNIKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DLL + E
Sbjct: 114 IPEGCVKILC--GNKLDLLNERAITTE 138
>gi|387594055|gb|EIJ89079.1| hypothetical protein NEQG_00898 [Nematocida parisii ERTm3]
gi|387595743|gb|EIJ93366.1| hypothetical protein NEPG_01708 [Nematocida parisii ERTm1]
Length = 200
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
+E+R I+I+GS + GK ++ + ++ F+ ++ I+ YT + LW
Sbjct: 1 MERRAKIVILGSCSSGKTSLAKKYINGGFDPNQAATIGAAFQTKEIHRDGYTLHLDLWDT 60
Query: 106 HLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVD 163
E + +I L D T +V+V+++ D ++ + W + L+ K L+ GNK D
Sbjct: 61 AGQERYGAIAPLYYRDANT-VVVVYDITDKLSIKIAQQWCSEVRLKNKTASLVVFGNKTD 119
Query: 164 LL 165
LL
Sbjct: 120 LL 121
>gi|330799117|ref|XP_003287594.1| Rab GTPase [Dictyostelium purpureum]
gi|325082380|gb|EGC35863.1| Rab GTPase [Dictyostelium purpureum]
Length = 202
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R F D+ S+ + TI + +W E F
Sbjct: 36 ILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERF 95
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDL 164
+ L++V+++ + + +++K W+ ID+ +F + L +GNK DL
Sbjct: 96 KTITTSYYRGAHGLIIVYDITSMDSFNSIKRWL--IDVDRFASPSVLKLIVGNKCDL 150
>gi|225555837|gb|EEH04127.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR]
gi|240278672|gb|EER42178.1| vacuolar sorting protein [Ajellomyces capsulatus H143]
gi|325090408|gb|EGC43718.1| vacuolar sorting-associated protein [Ajellomyces capsulatus H88]
Length = 285
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G + VGK +++ R ++ +F++ + TI + T SL
Sbjct: 16 LVLLGEAAVGKSSLVLRFVNNDFQENKEP---------TIGAAFLTQKCSLPNRTIKFEI 66
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGN 160
W E F+ + A ++V++L S+L KHWV + Q ++ +GN
Sbjct: 67 WDTAGQERFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGN 126
Query: 161 KVDL------------LPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
K+DL +PG + RR S PD + G SE+ + G+E
Sbjct: 127 KLDLTNEDPSAAGAAKIPGTQTWSPGSRRSAT---GSPGPDASEGGDSESSVADRDGEEG 183
Query: 209 PSWEIRRSC 217
++R S
Sbjct: 184 EEGDLRDSA 192
>gi|167389097|ref|XP_001738817.1| GTP-binding protein ryH1 [Entamoeba dispar SAW760]
gi|165897808|gb|EDR24880.1| GTP-binding protein ryH1, putative [Entamoeba dispar SAW760]
Length = 196
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108
+ I+ +G S+VGK I+ R ++ +F +++ + T+ + + + +W
Sbjct: 6 KQKIVFLGDSSVGKTCIIGRFMTGDFSTGYEATIGTDFSTKTMTFQNKSIQLQIWDTAGQ 65
Query: 109 EEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEI-LLCIGNKVD 163
E + RSL I D +A V+V+++ND + + + W+ + +K EI L +GNK+D
Sbjct: 66 ERY--RSLIPSYIRDS-SAAVIVYDINDRQSFENVDKWIEDVRSKEKGEIFLFLVGNKLD 122
Query: 164 LLPGH 168
L GH
Sbjct: 123 L--GH 125
>gi|407916415|gb|EKG09787.1| Ras GTPase [Macrophomina phaseolina MS6]
Length = 219
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 49 RPG--------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI----NTKYY 96
RPG ++++G S VGK +++ R + F+D +S+ TI NT
Sbjct: 10 RPGGSRFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDDNT--- 66
Query: 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--I 154
T +W E + + V+V+++ S+LD K WV + Q E +
Sbjct: 67 TVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIV 126
Query: 155 LLCIGNKVDLLPGHP 169
+ GNK+DL+ +P
Sbjct: 127 IALAGNKLDLVTENP 141
>gi|281205763|gb|EFA79952.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 493
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSEL--LVNGWTINTKYYTADVSLWMAHLHE 109
+L+IG S+VGK ++L R F++ S S + + V+ TI+ K T + +W E
Sbjct: 9 LLLIGDSSVGKTSLLLRFADGTFQETSVSMTAVDNKVHNVTIDGK--TIALQIWDTAGQE 66
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
F + +V+V+++ D ++ + +K W+ I F + + +GNK DL
Sbjct: 67 RFRTITSSFYRGAHGVVVVYDMTDQASFNNVKLWMQEIHRYAFAGVSRVLVGNKFDL 123
>gi|167389639|ref|XP_001739030.1| GTP-binding protein ryH1 [Entamoeba dispar SAW760]
gi|165897453|gb|EDR24605.1| GTP-binding protein ryH1, putative [Entamoeba dispar SAW760]
Length = 196
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108
+ I+ +G S+VGK I+ R ++ +F +++ + T+ + + + +W
Sbjct: 6 KQKIVFLGDSSVGKTCIIGRFMTGDFSTGYEATIGTDFSTKTMTFQNKSIQLQIWDTAGQ 65
Query: 109 EEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEI-LLCIGNKVD 163
E + RSL I D +A V+V+++ND + + + W+ + +K EI L +GNK+D
Sbjct: 66 ERY--RSLIPSYIRDS-SAAVIVYDINDRQSFENVDKWIEDVRSKEKGEIFLFLVGNKLD 122
Query: 164 LLPGH 168
L GH
Sbjct: 123 L--GH 125
>gi|427777835|gb|JAA54369.1| Putative rab subfamily protein of small gtpase [Rhipicephalus
pulchellus]
Length = 272
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G+ VGK ++++R F + + +N + LW E F
Sbjct: 14 VVLLGALGVGKTSLITRYSQKKFIGTTSPTIGASFTTLRVNVGDAKVRIQLWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ + A ++ +++ S+ +A+K WV + ++++ +L+ +GNK DL+
Sbjct: 74 RAMAPLYYRKANAAIVAYDITSASSFEAMKQWVLELRRNVEEAIVLVLVGNKCDLMQHRA 133
Query: 170 VHAEYRRRLLK 180
V E R +
Sbjct: 134 VDREMAERYAR 144
>gi|50082747|gb|AAT70068.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNIKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DLL + E
Sbjct: 114 IPEGCVKILC--GNKLDLLNERAITTE 138
>gi|4096662|gb|AAD10389.1| Rab1-like small GTP-binding protein [Petunia x hybrida]
Length = 202
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLSEIDRYANESVCKLLVGNKCDLVENKV 130
Query: 170 VHAEYRRRL 178
V + + L
Sbjct: 131 VDTQTGKAL 139
>gi|395860030|ref|XP_003802320.1| PREDICTED: ras-related protein Rab-13 [Otolemur garnettii]
Length = 201
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T+N + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVNIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKEHASAGVERLLLGNKCDMEAKRR 130
Query: 170 VHAEYRRRL 178
V E +L
Sbjct: 131 VQKEQADKL 139
>gi|401828357|ref|XP_003887892.1| Rab GTPase [Encephalitozoon hellem ATCC 50504]
gi|392998900|gb|AFM98911.1| Rab GTPase [Encephalitozoon hellem ATCC 50504]
Length = 198
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSSNVGK T++S+ L + + + L TI + + LW E F
Sbjct: 7 IVFLGSSNVGKTTLMSQYLHQEVQRSYGPTIGLDFVSTTIVVSGHRVRLQLWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-----DLQKFEILLCIGNKVDL 164
+ + ++VF++ D ++ + + HW+ ++ L+ +L +GNK DL
Sbjct: 67 NSIIPNYTRNSFLAIIVFDMKDKASFERIDHWINTLTKANDSLESKVRILVVGNKKDL 124
>gi|326917471|ref|XP_003205022.1| PREDICTED: ras-related protein Rab-12-like [Meleagris gallopavo]
Length = 262
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 63 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 122
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 123 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 176
>gi|145487073|ref|XP_001429542.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831315|emb|CAI39281.1| rab_B69 [Paramecium tetraurelia]
gi|124396635|emb|CAK62144.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+I+G +NVGK +L + F + D++ E IN K + +W E
Sbjct: 10 FIIVGDTNVGKSCLLLQFTDSRFRNEHDATIGVEFGSRNLKINDK--QIKLQIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLP 166
F + ++VF++ + + L+ W I K E+++ +GNK+DL
Sbjct: 68 SFKSITRSYYRGSIGGILVFDVTSRQSFEDLQKWYQEIQGYACDKIEMVI-VGNKIDLEE 126
Query: 167 GHPVHAEYRRRLLKRE-----ESSADPDFCQSGISETEGSSLL-----GDEEPSWEI 213
V E RR +++ E+SA + ET + +L G+ +P+ E+
Sbjct: 127 RREVKTEEARRYAQKQGFAYFETSAKTGENVDNVFETMANQVLKKIDSGEIDPTQEV 183
>gi|401885802|gb|EJT49887.1| putative Ras-related protein Rab-18 [Trichosporon asahii var.
asahii CBS 2479]
Length = 222
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF----EDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
+L+IG+S+VGK ++L R +F E A+ + V ++ + Y +S+W
Sbjct: 15 LLLIGNSSVGKSSLLLRFTDDDFLSEEETAATIGVDFKVKSVEVDGRRY--KLSIWDTAG 72
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
E F + +++V+++ +T D L W ID E + + +GNKVD
Sbjct: 73 QERFRTLTSSYYRGAQGVILVYDVTQRNTFDELIKWFREIDTYCAEDVVKIIVGNKVD 130
>gi|224047814|ref|XP_002191089.1| PREDICTED: ras-related protein Rab-4A [Taeniopygia guttata]
Length = 246
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 44 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 103
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 104 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 158
>gi|124087881|ref|XP_001346913.1| GTP-binding protein RAB2 homolog [Paramecium tetraurelia strain
d4-2]
gi|145474789|ref|XP_001423417.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057302|emb|CAH03286.1| GTP-binding protein RAB2 homolog [Paramecium tetraurelia]
gi|74834222|emb|CAI44486.1| rab_C66 [Paramecium tetraurelia]
gi|124390477|emb|CAK56019.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 14/175 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+I+G +NVGK +L + F + D++ + + + +W E F
Sbjct: 10 FIIVGDTNVGKSCLLLQFTDSRFRNEHDATIGVEFGSRNLKINEKQIKLQIWDTAGQESF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLPGH 168
+ ++VF++ + + D ++ W I K E+++ +GNK+DL
Sbjct: 70 KSITRSYYRGSIGGILVFDVTNRESFDNVQKWHTEIQGYACDKIEMVI-VGNKIDLEDRR 128
Query: 169 PVHAEYRRRLLKRE-----ESSADPDFCQSGISETEGSSLL-----GDEEPSWEI 213
V E R+ ++ E+SA + E+ + +L GD +PS EI
Sbjct: 129 EVKTEEGRKFAQKHGFDYFETSAKTGENVDAVFESMATKVLAKIGSGDLDPSQEI 183
>gi|407043786|gb|EKE42151.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 201
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
+ D + +L++G S+VGK +I R + FED SS + I
Sbjct: 2 TVDEKQKHRNIKVLLLGESSVGKTSITQRYVDNTFEDIYLSSVGVDFKFKEIKRDNELIR 61
Query: 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK-FEILLCI 158
+ +W E F + A +VF++N+ S+ ++ W I ++ +++++ +
Sbjct: 62 LQIWDTAGQERFQSIAKSYYRNADAAFIVFDINNESSFKKVQFWYNEISQEEAYQLVILV 121
Query: 159 GNKVDL 164
GNK DL
Sbjct: 122 GNKYDL 127
>gi|290994214|ref|XP_002679727.1| small GTPase [Naegleria gruberi]
gi|284093345|gb|EFC46983.1| small GTPase [Naegleria gruberi]
Length = 208
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 22/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRL------LSVNFEDASDSSSELL---VNGWTINTKYYTADVSL 102
I+++GS N GK ++ +R ++ ++E ++D+S +L VN + T+ + L
Sbjct: 19 IVMVGSPNSGKTSLATRFAKCEFDMNKSYEHSTDTSIQLAKIDVNDKQVTTEIWDCISEL 78
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTL-DALKHWVPSIDLQKFE----ILLC 157
+AH E+ ++ L A ++ +L D STL DAL +W+P I +K+ I+LC
Sbjct: 79 GVAH-EEKRRLQYL----NTMAFIICVSLTDESTLEDALHYWIPEI--KKYSPDTPIVLC 131
Query: 158 IGNKVDLLPG 167
G+K+DL+
Sbjct: 132 -GSKLDLVKN 140
>gi|123476120|ref|XP_001321234.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121904056|gb|EAY09011.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IGS+ VGK I+ R+ F + + S++ + + ++ + +W E F
Sbjct: 10 FIVIGSTGVGKTCIMKRMTENEFRENTLSTTGVEFDSTKVDVDGKEIPIQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
S +++VF+L D + + + W+ ++ Q EI+L IGNK D+
Sbjct: 70 RSISRAYFRNAIGVLLVFSLTDKESFEEIGGWLNDARTLCCQDAEIML-IGNKCDI 124
>gi|115397973|ref|XP_001214578.1| GTP-binding protein ypt5 [Aspergillus terreus NIH2624]
gi|114192769|gb|EAU34469.1| GTP-binding protein ypt5 [Aspergillus terreus NIH2624]
Length = 218
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +++ R + F+D +S TI + T +SL
Sbjct: 20 LVLLGESAVGKSSLVLRFVKNQFDDYRES---------TIGAAFLTQTISLDDSTTVKFE 70
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ S+LD K WV + Q E ++ G
Sbjct: 71 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVIALAG 130
Query: 160 NKVDLLPGHP 169
NK+DL+ +P
Sbjct: 131 NKLDLVTENP 140
>gi|301616136|ref|XP_002937521.1| PREDICTED: ras-related protein Rab-12 [Xenopus (Silurana)
tropicalis]
Length = 345
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 146 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 205
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T + L W+ ID E LL +GNK+D
Sbjct: 206 NSITSAYYRSAKGIILVYDITKKETFEDLPKWMKMIDKYASEEAELLLVGNKLD 259
>gi|384497072|gb|EIE87563.1| GTP-binding protein ypt1 [Rhizopus delemar RA 99-880]
Length = 204
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDADSFNNVKQWLQEIDRYAAEGVNKLLVGNKSDLVDKKA 130
Query: 170 VHAEYRRRL 178
V + +
Sbjct: 131 VETDQAKEF 139
>gi|328874798|gb|EGG23163.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 205
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R ++ D S+ + T+N T + +W E F
Sbjct: 11 ILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ +++V++ D + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAQGIILVYDCTDQDSFNNVKQWMGEIDRYACENVNKLLVGNKTDLV 126
>gi|380022458|ref|XP_003695062.1| PREDICTED: ras-related protein RabJ-like isoform 1 [Apis florea]
Length = 221
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++ +GS VGK +I+ R + S +E L TI ++T ++L
Sbjct: 8 VVALGSQGVGKTSIIMRYIG-------KSCNEHL--SPTIGASFFTCKLNLENARIMLRV 58
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGN 160
W E F + A ++VF+L +T A+K WV + ++++ L+ IGN
Sbjct: 59 WDTAGQERFRSMAPMYYRNANAAMLVFDLTQYNTFAAMKRWVTELRRNVEEVMTLVVIGN 118
Query: 161 KVDLLPGHPVHAEYRR 176
K DL V AE R
Sbjct: 119 KSDLTKERQVDAEEGR 134
>gi|401416870|ref|XP_003872929.1| putative Rab11 GTPase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322489155|emb|CBZ24407.1| putative Rab11 GTPase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 208
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +++R + F + S+ + ++ + A + +W E F
Sbjct: 10 IVLIGDSGVGKSNLMTRYTTNEFNQETPSTIGVEFMTKSVKIQSRDAKIQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSIPTWLQ--ELRVFVPATCCIFLIGNKCDL 124
>gi|27696356|gb|AAH43857.1| Rab3d protein, partial [Xenopus laevis]
Length = 246
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK 94
RQ S + +LIIG+S+VGK + L R +F A S+ + T+
Sbjct: 37 RQPQKDAADQSFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRN 96
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ +W E + + ++++++++L + +A++ W I ++
Sbjct: 97 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDISNLESFNAVQDWATQIKTYSWDN 156
Query: 154 -ILLCIGNKVDLLPGHPVHAEYRRRL 178
+L +GNK DL + AE R+L
Sbjct: 157 AQVLLVGNKCDLEDDRVIAAEDGRKL 182
>gi|50082743|gb|AAT70066.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQELDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNIKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DLL + E
Sbjct: 114 IPEGCVKILC--GNKLDLLNERAITTE 138
>gi|323455357|gb|EGB11225.1| hypothetical protein AURANDRAFT_59866 [Aureococcus anophagefferens]
Length = 198
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-------SSELLVNGWTINTKYYTADVSLWM 104
++++G + VGK ++ R ++ F+ S+S S +LV+G + +W
Sbjct: 13 VVLLGDTGVGKSSLAQRYVTNTFKPYSESTIGASFMSKMILVDGAPCKCQ-------IWD 65
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E++ + A ++VF++ ++LD LK WV + Q E L GNK
Sbjct: 66 TAGQEKYHSLAPMYYRGAAAAILVFDITKPASLDKLKAWVRELQTQGPERLALAIAGNKA 125
Query: 163 DL 164
DL
Sbjct: 126 DL 127
>gi|149036251|gb|EDL90910.1| rCG35675, isoform CRA_b [Rattus norvegicus]
Length = 243
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A + + T+ + + +W E F
Sbjct: 44 VIIIGSRGVGKTSLMERFTDDTFCEACKCNVGVDFKIKTVELRGKKIRLQIWDTAGQERF 103
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 104 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 157
>gi|121706988|ref|XP_001271697.1| RAB GTPase Ypt5, putative [Aspergillus clavatus NRRL 1]
gi|119399845|gb|EAW10271.1| RAB GTPase Ypt5, putative [Aspergillus clavatus NRRL 1]
Length = 218
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDESTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E ++ GNK+DL+ +
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVIALAGNKLDLVTEN 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|440295160|gb|ELP88073.1| rab7, putative [Entamoeba invadens IP1]
Length = 200
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHEE 110
++IG S VGK ++++R ++ F D ++ S+ L+ T+N + YT + +W HE
Sbjct: 10 ILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVTVNGQTYT--LQIWDTAGHER 67
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHW----VPSIDLQKFE--ILLCIGNKVDL 164
+S V+ F++ + + + L+ W + +L + +GNK+D
Sbjct: 68 YSCVVTTFYRGSDCCVLCFDVTNRESFNHLEKWKNDFIEGANLTNPGSVPIFVVGNKIDC 127
Query: 165 LP 166
P
Sbjct: 128 DP 129
>gi|123482411|ref|XP_001323776.1| Ras family protein [Trichomonas vaginalis G3]
gi|62736264|gb|AAX97461.1| small Rab GTPase RabA5 [Trichomonas vaginalis]
gi|121906647|gb|EAY11553.1| Ras family protein [Trichomonas vaginalis G3]
Length = 206
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 9/161 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IG S GK +IL RL F + S+ + + N + + +W E F
Sbjct: 10 FIVIGCSGAGKTSILRRLCEDKFNRGTQSTVGIEYFTYVTNIENKMVKMMIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWV--PSIDLQKFEILLCIGNKVDLLPGHP 169
+ +++V+++ D + D L W+ ++ ++ +GNK DL
Sbjct: 70 YTIARAYFRNALGVILVYDITDRKSFDQLPRWLRDARVEADPHCTVILVGNKCDLKDQRV 129
Query: 170 VHAEYRRRLLKREE------SSADPDFCQSGISETEGSSLL 204
V + + + E S+A+ D Q E G LL
Sbjct: 130 VSEQEAKEFAAKNELTYIETSAANNDNIQETFLEA-GRDLL 169
>gi|281200877|gb|EFA75091.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 221
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R F D+ S+ + TI + +W E F
Sbjct: 43 ILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKRIKLQIWDTAGQERF 102
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ L++V+++ + + +++K W+ ID+ +F + L +GNK DL
Sbjct: 103 KTITTSYYRGAHGLIIVYDITSMESFNSIKRWL--IDVDRFASPSVLKLIVGNKCDLNSK 160
Query: 168 HPVHAEYRRRL 178
V + ++
Sbjct: 161 RAVDFKVAKKF 171
>gi|258578121|ref|XP_002543242.1| GTP-binding protein ypt5 [Uncinocarpus reesii 1704]
gi|237903508|gb|EEP77909.1| GTP-binding protein ypt5 [Uncinocarpus reesii 1704]
Length = 217
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E I+ GNK+DL+
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIIIALAGNKLDLVTDS 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|67526769|ref|XP_661446.1| hypothetical protein AN3842.2 [Aspergillus nidulans FGSC A4]
gi|40739917|gb|EAA59107.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259481595|tpe|CBF75261.1| TPA: RAB GTPase Ypt5, putative (AFU_orthologue; AFUA_4G08040)
[Aspergillus nidulans FGSC A4]
Length = 218
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDESTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E ++ GNK+DL+ +
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVIALAGNKLDLVTEN 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|147899840|ref|NP_001087991.1| RAB3D, member RAS oncogene family [Xenopus laevis]
gi|52139114|gb|AAH82662.1| LOC494677 protein [Xenopus laevis]
Length = 217
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK 94
RQ S + +LIIG+S+VGK + L R +F A S+ + T+
Sbjct: 8 RQPQKDAADQSFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRN 67
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ +W E + + +++++++++ + +A++ W I ++
Sbjct: 68 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDISNMESFNAVQDWATQIKTYSWDN 127
Query: 154 -ILLCIGNKVDLLPGHPVHAEYRRRL 178
+L +GNK DL + AE R+L
Sbjct: 128 AQVLLVGNKCDLEDDRVIPAEDGRKL 153
>gi|123418764|ref|XP_001305403.1| Ras family protein [Trichomonas vaginalis G3]
gi|62736260|gb|AAX97459.1| small Rab GTPase RabA3 [Trichomonas vaginalis]
gi|121886919|gb|EAX92473.1| Ras family protein [Trichomonas vaginalis G3]
Length = 206
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSS--ELLVNGWTINTKYYTADVSLWMAHLHE 109
++IG S GK +IL RL+ F + S+ E + TIN + T + +W E
Sbjct: 10 FIVIGCSGAGKTSILRRLVENKFVKGTQSTVGIEYFTHITTINGR--TIKMMIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV--PSIDLQKFEILLCIGNKVDLLPG 167
F + +V+VF++ D + D L W+ ++ ++ +GNK DL
Sbjct: 68 RFYTIAKAYFRSALGVVLVFDITDRKSFDQLPRWLRDARMEADPHCSVILVGNKSDLAAN 127
Query: 168 HPVHAEYRRRLLKREE 183
V E + E
Sbjct: 128 RLVSKEEAEEFARTHE 143
>gi|330936207|ref|XP_003305289.1| hypothetical protein PTT_18094 [Pyrenophora teres f. teres 0-1]
gi|311317754|gb|EFQ86627.1| hypothetical protein PTT_18094 [Pyrenophora teres f. teres 0-1]
Length = 220
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 48 KRPG--------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI----NTKY 95
+RPG ++++G S VGK +++ R + F+D +S+ TI NT
Sbjct: 9 QRPGGSRFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDENT-- 66
Query: 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-- 153
T +W E + + V+V+++ ++LD K WV + Q E
Sbjct: 67 -TVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANENI 125
Query: 154 ILLCIGNKVDLLPGHP 169
I+ GNK+DL+ P
Sbjct: 126 IIALAGNKLDLVTESP 141
>gi|134024040|gb|AAI35229.1| rab12 protein [Xenopus (Silurana) tropicalis]
Length = 274
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 75 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 134
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T + L W+ ID E LL +GNK+D
Sbjct: 135 NSITSAYYRSAKGIILVYDITKKETFEDLPKWMKMIDKYASEEAELLLVGNKLD 188
>gi|84994386|ref|XP_951915.1| small GTP-binding protein, Rab family [Theileria annulata strain
Ankara]
gi|65302076|emb|CAI74183.1| small GTP-binding protein, Rab family, putative [Theileria
annulata]
Length = 222
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSS--ELLVNGWTINTKYYTADVSLWMA 105
+R I+++G + GK +I++R + ++ A ++ + L T+N K T + LW
Sbjct: 13 QRNKIVLLGEQSAGKTSIVTRFVYDHYIPAYAATIGIDFLSKVVTVNQK--TMRLQLWDT 70
Query: 106 HLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E F S+ I D +A+V V+++ + + D + W+ I + + +++ +GNK
Sbjct: 71 AGQERFRSLMPSYIRDSSSAIV-VYDITNRESFDRTRQWIKDIKDMRGDKAVIVVVGNKT 129
Query: 163 DLLPGHPVHAEYRRRLLK------REESSADPDFCQ 192
DLL V E + L RE S+ + D Q
Sbjct: 130 DLLDKRTVSFEEGQSLANEMNCFFRETSAKNGDNVQ 165
>gi|123484457|ref|XP_001324271.1| Ras family protein [Trichomonas vaginalis G3]
gi|62736266|gb|AAX97462.1| small Rab GTPase RabA6 [Trichomonas vaginalis]
gi|121907151|gb|EAY12048.1| Ras family protein [Trichomonas vaginalis G3]
Length = 206
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
++++ + I+++GSS VGK I+ RL+ F + S+ + + + + + +
Sbjct: 2 KSTISQSFKIVVVGSSGVGKTAIVQRLIDGTFREEGQSTVGVEFKSFICPLEDQSVKLQI 61
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF----EILLCI 158
W E F S ++V+++ + ++ + L W+ DLQ +L +
Sbjct: 62 WDTAGQERFKSVSKAYFRNAVGAILVYDITNETSFEELSTWLN--DLQALCNPNAYILLV 119
Query: 159 GNKVDL 164
GNK DL
Sbjct: 120 GNKGDL 125
>gi|357017283|gb|AET50670.1| hypothetical protein [Eimeria tenella]
Length = 207
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 24/188 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S+VGK +++++ ++ F + ++ ++ L I+ K T + +W E
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKKFSNQYKATIGADFLTKDVVIDDKEVT--IQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI------LLCIGNKVD 163
F + V+VF++ + + D+L+ W +Q + +GNKVD
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTNPKSFDSLESWKDEFLIQSSPADPDAFPFVVLGNKVD 128
Query: 164 LLPGHPVHAEYRRRLLKREESSADPDFCQSGIS--ETEGSSLLGDEEPSWEIRRSCLEWC 221
E RR + E+ FC S IS ET + EI R ++
Sbjct: 129 -------EKEKRRVSAAKAEA-----FCGSKISYFETSAKQAINVSAAFEEIARKAMQHE 176
Query: 222 TEHRIEYI 229
T+ Y+
Sbjct: 177 TKQEQIYL 184
>gi|71662000|ref|XP_818013.1| small GTP-binding protein Rab18 [Trypanosoma cruzi strain CL
Brener]
gi|70883239|gb|EAN96162.1| small GTP-binding protein Rab18, putative [Trypanosoma cruzi]
Length = 218
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-------VSLWM 104
+ ++G S VGK +++ S F+ D SS + ++ N + AD + LW
Sbjct: 11 VFLLGDSGVGKSSLMLSFASGTFD--PDISSTIGIDFKVKNVEVMDADGVKRNVNIHLWD 68
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL------QKFEILLCI 158
E F + A+V+V+++N+ T L+ W+ D+ + + L I
Sbjct: 69 TAGQERFRTLTSSYYRGANAVVLVYDVNEPQTFHGLQRWMEEADVFCRNDDEDDAVYLLI 128
Query: 159 GNKVDLLPGHPVHAE 173
GNK+D G E
Sbjct: 129 GNKIDKCIGGGSEGE 143
>gi|313227767|emb|CBY22916.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G S VGK +IL R F + + + I K ++ LW E F
Sbjct: 9 LLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRKGQEINLQLWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIGNKVD 163
+V+VF++ S+ +AL+ W+ I EI + +GNKVD
Sbjct: 69 KSLVRSFYKGANGVVVVFDIGSRSSFEALRRWMSEIQGNCDEIPRILVGNKVD 121
>gi|50082749|gb|AAT70069.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNIKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I + +LC GNK+DLL + E
Sbjct: 114 IP-EGCAKILC-GNKLDLLNERAITTE 138
>gi|66811592|ref|XP_639975.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|74854016|sp|Q54NU2.1|RAB1D_DICDI RecName: Full=Ras-related protein Rab-1D
gi|60466912|gb|EAL64956.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 204
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R ++ D S+ + T+N T + +W E F
Sbjct: 13 ILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ +++V++ D + +K W+ ID E + L +GNK DL+
Sbjct: 73 RTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLV 128
>gi|452988143|gb|EME87898.1| hypothetical protein MYCFIDRAFT_70384 [Pseudocercospora fijiensis
CIRAD86]
Length = 222
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 49 RPG--------ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTA 98
RPG ++++G S VGK +++ R + F+D +S+ + L ++ + T
Sbjct: 8 RPGGARFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDEQ-TTV 66
Query: 99 DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILL 156
+W E + + V+V+++ ++L+ K WV + Q E I+
Sbjct: 67 KFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLEKAKAWVKELQRQANENIIIA 126
Query: 157 CIGNKVDLLPGHP 169
GNK DL+ P
Sbjct: 127 LAGNKADLVAEQP 139
>gi|429961743|gb|ELA41288.1| small GTP-binding protein domain protein [Vittaforma corneae ATCC
50505]
Length = 206
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 25/152 (16%)
Query: 38 MDSTDRASLE------KRPGILIIGSSNVGKRTILSRLLSVNFEDA-------SDSSSEL 84
M S+ R + E K I+I+G +NVGK ++ R L F++A S+ E+
Sbjct: 1 MGSSSRKTSELSKNVPKTFKIVILGDTNVGKSSLFIRYLRDEFKEAIANTIAISNDFKEV 60
Query: 85 LVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV 144
LV+G ++ + +W E F + + V+++N T +K+ +
Sbjct: 61 LVDGNPVH-------LQMWDTAGQERFKSIVSQLYRDADGFIFVYDVNISRTFSGMKNLI 113
Query: 145 P---SIDLQKFEILLCIGNKVDLLPGHPVHAE 173
SI KF +L +GNK+D L G + E
Sbjct: 114 AELSSILNPKFTVL--VGNKIDCLEGEALEEE 143
>gi|189502804|gb|ACE06783.1| unknown [Schistosoma japonicum]
Length = 248
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 6/179 (3%)
Query: 5 SFRSHDIVSISLLIAIDEDRLSFVRV---LIFGRQEMDSTDRASLEKRPGILIIGSSNVG 61
S++ ++I L D + F R ++ Q D+TD+ + + +LIIG+S+VG
Sbjct: 10 SYQCNNITLYMTLGVFGSDFVLFYRFQKRVVIMSQTRDATDQ-NFDYMFKLLIIGNSSVG 68
Query: 62 KRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ 121
K + L R +F A S+ + TI + + +W E + +
Sbjct: 69 KTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQDKRVKLQIWDTAGQERYRTITTAYYRG 128
Query: 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRL 178
++++++ + + +A++ WV I ++ ++ +GNK DL+ V + R L
Sbjct: 129 AMGFILMYDITNEESFNAVQDWVTQIKTYSWDNAQVVLVGNKCDLVDDRVVSVDRGRHL 187
>gi|123481715|ref|XP_001323626.1| GTP-binding protein YPTM1 [Trichomonas vaginalis G3]
gi|121906494|gb|EAY11403.1| GTP-binding protein YPTM1, putative [Trichomonas vaginalis G3]
Length = 201
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK +IL + F D S+ + T++ + +W E F
Sbjct: 12 ILIIGDSAVGKSSILLQFSDQTFSDNYVSTIGVDFKIRTLDVDGKQVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPGHP 169
A+ +V+++ D + + L+ WV +D K + +GNK DL
Sbjct: 72 QSIVSNYYHGSHAIALVYDITDRKSFENLRKWVSDVDRLANKQVCRIIVGNKTDLSD--- 128
Query: 170 VHAEYRRRLLKREESSADPD 189
+R ++R+E A D
Sbjct: 129 ------KRAVRRDEGQAFAD 142
>gi|281337299|gb|EFB12883.1| hypothetical protein PANDA_010496 [Ailuropoda melanoleuca]
Length = 219
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 6 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 66 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 120
>gi|402591657|gb|EJW85586.1| member Ras oncogene family RAB1A [Wuchereria bancrofti]
Length = 205
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLNGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL---- 165
+ +++V+++ D + + +K W+ ID E + L +GNK DL+
Sbjct: 74 RTITSSYYRGAHGIIVVYDITDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDLIIRRA 133
Query: 166 PGHPVHAEYRRRL 178
H EY +L
Sbjct: 134 VEHSAAKEYADQL 146
>gi|344297148|ref|XP_003420261.1| PREDICTED: ras-related protein Rab-19-like [Loxodonta africana]
Length = 217
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ +S + + ++ + V IN K + +W E
Sbjct: 20 IILIGDSNVGKTCVVQHFMSGVYTETQQNTIGVDFTVRSLEINGK--KVKMQVWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F + A ++ ++L ST +++ HW+ ++ +++ IGNK DL
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEVEKYGAANLVVMLIGNKADL 134
>gi|71031448|ref|XP_765366.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352322|gb|EAN33083.1| GTP-binding protein rab6, putative [Theileria parva]
Length = 222
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSS--ELLVNGWTINTKYYTADVSLWMA 105
+R I+++G + GK +I++R + ++ A ++ + L T+N K T + LW
Sbjct: 13 QRNKIVLLGEQSAGKTSIVTRFVYDHYIPAYAATIGIDFLSKVVTVNQK--TMRLQLWDT 70
Query: 106 HLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E F S+ I D +A+V V+++ + + D + W+ I + + +++ +GNK
Sbjct: 71 AGQERFRSLMPSYIRDSSSAIV-VYDITNRESFDRTRQWIKDIKDMRGDKAVIVVVGNKT 129
Query: 163 DLLPGHPVHAEYRRRLLK------REESSADPDFCQ 192
DLL V E + L RE S+ + D Q
Sbjct: 130 DLLDKRTVSFEEGQSLANEMNCFFRETSAKNGDNVQ 165
>gi|50082745|gb|AAT70067.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGANFNEDLSPT------KGIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++VF++ D +L+ + W P
Sbjct: 55 QIDLKSVKLHIWELPRAENAKSVTSIYMKN-CSCVIVVFDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DL + E
Sbjct: 114 IPEGCVKILC--GNKLDLSNERAITTE 138
>gi|50082735|gb|AAT70062.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGANFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++VF++ D +L+ + W P
Sbjct: 55 QIDLKSVKLHIWELPRAENAKSVTSIYMKN-CSCVIVVFDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DL + E
Sbjct: 114 IPEGCVKILC--GNKLDLSNERAITTE 138
>gi|347841938|emb|CCD56510.1| similar to ras-related protein rab-5a [Botryotinia fuckeliana]
Length = 221
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +++ R + F+D +S TI + T +SL
Sbjct: 21 LVLLGESAVGKSSLVLRFVKDQFDDYRES---------TIGAAFLTQTISLDENTTVKFE 71
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ ++LD K WV + Q E I+ G
Sbjct: 72 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIIIALAG 131
Query: 160 NKVDLLPGHP 169
NK+DL+ P
Sbjct: 132 NKLDLVTEQP 141
>gi|353239644|emb|CCA71547.1| probable Ras-related protein Rab-18 [Piriformospora indica DSM
11827]
Length = 218
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV--SLWMAHLHE 109
+L+IG+S+VGK ++L R F +SS+ + V+ + V S+W E
Sbjct: 12 LLLIGNSSVGKSSLLMRFTDAQFLPEDESSATIGVDFRVCKMEIGGRRVKLSIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPG 167
F + +++ +++++ T DAL W +D + + + +GNK+D
Sbjct: 72 RFRTITSSYYRGAQGIIVAYDISNRETFDALPRWFTELDTYVTPSVVKMLVGNKLDKEFS 131
Query: 168 HPVHAEYRRRLLKR 181
V + R+ +R
Sbjct: 132 RAVSEDEGRKFAQR 145
>gi|238491614|ref|XP_002377044.1| RAB GTPase Ypt5, putative [Aspergillus flavus NRRL3357]
gi|317146075|ref|XP_001821272.2| GTP-binding protein ypt5 [Aspergillus oryzae RIB40]
gi|220697457|gb|EED53798.1| RAB GTPase Ypt5, putative [Aspergillus flavus NRRL3357]
gi|391869236|gb|EIT78438.1| GTPase Rab5/YPT51 [Aspergillus oryzae 3.042]
Length = 218
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDESTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E ++ GNK+DL+ +
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVIALAGNKLDLVTEN 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|157865435|ref|XP_001681425.1| putative small GTP-binding protein Rab11 [Leishmania major strain
Friedlin]
gi|68124721|emb|CAJ02862.1| putative small GTP-binding protein Rab11 [Leishmania major strain
Friedlin]
Length = 208
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +++R + F + S+ + ++ + A + +W E F
Sbjct: 10 IVLIGDSGVGKSNLMTRYTTNEFNQETPSTIGVEFMTKSVKIESRDAKIQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSIPTWLQ--ELRVFVPATCCIFLIGNKCDL 124
>gi|123455972|ref|XP_001315725.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|67944375|gb|AAY83823.1| small Rab GTPase RabC8 [Trichomonas vaginalis]
gi|121898411|gb|EAY03502.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 168
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG + VGK +L RL + F + + + I T+ ++ LW E+F
Sbjct: 3 IVVIGETQVGKTCLLRRLYANAFTNNIPQTIGAAFQNYVIQTQKGKVELQLWDTAGQEKF 62
Query: 112 SIRSL-PISDQLTAL-VMVFNLNDLSTLDALKHWVPSI 147
RSL P+ +L A V+ F+L + + +AL+ W I
Sbjct: 63 --RSLTPMYYRLAAFAVICFDLTNKPSFEALESWYTDI 98
>gi|340375344|ref|XP_003386196.1| PREDICTED: hypothetical protein LOC100638005 [Amphimedon
queenslandica]
Length = 979
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT--INTKYYTADVSLWMAHLHE 109
++I+G S VGK +I+ RL S E S L ++ T IN + T LW E
Sbjct: 13 VVILGDSGVGKTSIIRRLSSPTSEPLPAPRSTLGLDYSTALINAQDETVVFQLWDTAGQE 72
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDLLP 166
F + + A ++V+++ +T +++K W+ + + +L+ +GNK D
Sbjct: 73 RFHSTTAVYFKRADAFIIVYDVTSKNTFESVKAWINLVKATIRTELPVLMLMGNKCDCRE 132
Query: 167 GHPVHAE------YRRRLLKREESSADPD-FCQSGISETEGSSLLGDEEPSWE-IRRSCL 218
V E + R L E S+ D QS T S LL E E IRRS L
Sbjct: 133 LRQVKKEEGQKLAFELRALFSETSAKSGDNVLQS--HTTLASLLLERENQDMEAIRRSAL 190
>gi|170594385|ref|XP_001901944.1| Ras-related protein Rab-1A [Brugia malayi]
gi|158590888|gb|EDP29503.1| Ras-related protein Rab-1A, putative [Brugia malayi]
Length = 205
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLNGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL---- 165
+ +++V+++ D + + +K W+ ID E + L +GNK DL+
Sbjct: 74 RTITSSYYRGAHGIIVVYDITDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDLIIRRA 133
Query: 166 PGHPVHAEYRRRL 178
H EY +L
Sbjct: 134 VEHSAAKEYADQL 146
>gi|403302550|ref|XP_003941919.1| PREDICTED: ras-related protein Rab-13 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQANKLAR 141
>gi|354468869|ref|XP_003496873.1| PREDICTED: ras-related protein Rab-4A-like [Cricetulus griseus]
Length = 218
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
S+D L+ L+IG++ GK +L + + F+D S+ + + IN
Sbjct: 4 SSDSQPLDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 63
Query: 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILL 156
+ +W E F + ++V+++ T +AL +W+ + Q I+L
Sbjct: 64 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 123
Query: 157 CIGNKVDL 164
C GNK DL
Sbjct: 124 C-GNKKDL 130
>gi|395531649|ref|XP_003767887.1| PREDICTED: ras-related protein Rab-4A [Sarcophilus harrisii]
Length = 249
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 47 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 106
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 107 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 161
>gi|392572161|gb|EIW65333.1| ras-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 399
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 22/158 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI---NTKYYTADVSLWMAHLH 108
+++IG+S VGK +I ++ +S F ++ T+ N + +W
Sbjct: 6 LVVIGASGVGKSSIRNQYISGRFTTGYRATIGADFITKTLPHHNVPDELVTLQIWDTAGQ 65
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW---------VPSIDLQKFEILLCIG 159
E FS S A++++F++N TLDAL W VP + +F + +G
Sbjct: 66 ERFSALSSAFFRGADAVILMFDVNQPQTLDALTKWWGDFRDKAPVPDEAVDEF-CCVVVG 124
Query: 160 NKVDLL----PGHPVHAE-----YRRRLLKREESSADP 188
NK+D+ GH +E Y RL+ R + P
Sbjct: 125 NKIDIAQAAGSGHSAVSEAEAIDYVHRLVPRPATPPSP 162
>gi|63102287|gb|AAH94846.1| RAB13 protein, partial [Homo sapiens]
Length = 244
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 52 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 111
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGH 168
+ +++V+++ D + + +++W+ SI E LL +GNK D+
Sbjct: 112 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLL-LGNKCDMEAKR 170
Query: 169 PVHAEYRRRLLK 180
V E +L +
Sbjct: 171 KVQKEQADKLAR 182
>gi|37791225|gb|AAR03593.1| Rab5 [Leishmania donovani]
Length = 211
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 38 MDSTDRASLEKRPG--------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW 89
M S RAS G ++++G S VGK +++ RL+ F + +S+ +
Sbjct: 1 MSSISRASTTTAGGSASTRKFKLVLLGESGVGKSSVVQRLMKDAFSEKLNSTVGASFFRY 60
Query: 90 TINTKYYTA-DVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI 147
T N TA +W E F S+ S+ ALV VF++ T + ++W+ +
Sbjct: 61 TCNVDDDTAVHFDIWDTAGQERFKSLASMYYRGAAAALV-VFDIVSADTFEKARYWIREL 119
Query: 148 DLQKFE-ILLCIGNKVDL 164
E +++ +GNK DL
Sbjct: 120 QANSSETVVMLVGNKKDL 137
>gi|313218156|emb|CBY41456.1| unnamed protein product [Oikopleura dioica]
gi|313222707|emb|CBY41703.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G S VGK +IL R F + + + I K ++ LW E F
Sbjct: 9 LLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRKGQEINLQLWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIGNKVD 163
+V+VF++ S+ +AL+ W+ I EI + +GNKVD
Sbjct: 69 KSLVRSFYKGANGVVVVFDIGSRSSFEALRRWMSEIQGNCDEIPRILVGNKVD 121
>gi|355714956|gb|AES05175.1| RAB4A, member RAS oncoprotein family [Mustela putorius furo]
Length = 224
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 23 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 82
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 83 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 137
>gi|354548327|emb|CCE45063.1| hypothetical protein CPAR2_700670 [Candida parapsilosis]
Length = 231
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + F+DA +S+ + L TI T +W E
Sbjct: 22 LVLLGESAVGKSSIVHRFVKNTFDDARESTIGAAFLTQSITIPETQTTIKFEIWDTAGQE 81
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
+ + A + V+++ ++ + W+ + Q ++ +GNK+DL
Sbjct: 82 RYKSLAPMYYRNANAALCVYDITSRNSFAKAQDWIKELKKQAPSDIVVALVGNKLDLEDN 141
Query: 168 HPVHAE 173
V +E
Sbjct: 142 REVQSE 147
>gi|340052328|emb|CCC46604.1| putative small GTP-binding protein RAB6 [Trypanosoma vivax Y486]
Length = 223
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDS-------SSELLVNGWTINTKYYTADVS 101
R ++++G +VGK +I++R ++ FE++ + S LL++G T+ +
Sbjct: 10 RYKVVLLGDQSVGKTSIITRFINGTFEESYHATIGIDFFSKTLLLDGVTVR-------LH 62
Query: 102 LWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILL 156
+W E F R+L I D LV+ + LS L+ K WV + + I++
Sbjct: 63 VWDTAGQERF--RALIPGYIRDSAATLVVYDVASRLSFLNTFK-WVDDVRALRGNETIIV 119
Query: 157 CIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205
+GNK D E+ RR + EE+ D + GI TE S++LG
Sbjct: 120 LVGNKSD---------EHERREVTAEEAQEKAD--EYGIMFTEVSAMLG 157
>gi|123401208|ref|XP_001301812.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736246|gb|AAX97452.1| small Rab GTPase Rab6b [Trichomonas vaginalis]
gi|121883039|gb|EAX88882.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 191
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +GS+ VGK ++L+RL++ F + +++ + + + T + +W E F
Sbjct: 7 VVFLGSAGVGKTSLLNRLMTDEFSNQYNTTIGVDFFTKPVQVQGRTVTLQIWDTAGQERF 66
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC--IGNKVDL 164
S+ I D A V+V++++D + D + W ++ ++ C +GNK+DL
Sbjct: 67 KSLMPSYIRDSSVA-VIVYDVSDEKSFDEAQEWYETVMHERGNEAKCVLVGNKIDL 121
>gi|183230591|ref|XP_654968.2| rab-19 [Entamoeba histolytica HM-1:IMSS]
gi|56790142|dbj|BAD82867.1| small GTPase EhRabX19 [Entamoeba histolytica]
gi|169802860|gb|EAL49579.2| rab-19, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703417|gb|EMD43870.1| small GTPase EhRabX19, putative [Entamoeba histolytica KU27]
Length = 206
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L RL F+ +S + + + + +W A E F
Sbjct: 8 ILLIGESGVGKTAMLQRLTQGTFDGIYTASVGVDLKTKIVEINGEEVIMEIWDAAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPV 170
+ A V+VF+L D ++ + + +W+ ++ I+ +GNK DL V
Sbjct: 68 RSVTQSYYRGTHAAVIVFDLTDKTSFEMVGYWLSEMEKDNNRPIIALVGNKSDLSNARTV 127
Query: 171 HAEYRR 176
E R
Sbjct: 128 PIEVIR 133
>gi|227603|prf||1707300A guanine nucleotide binding protein
Length = 208
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + + +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRNVLVGNKCDLAENRA 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|255073941|ref|XP_002500645.1| predicted protein [Micromonas sp. RCC299]
gi|226515908|gb|ACO61903.1| predicted protein [Micromonas sp. RCC299]
Length = 289
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 223 EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSL 279
E+ E + AS D D+ L + GD QG+ R+ A+ AH W G+ +K G T S+
Sbjct: 147 ENGYEAVAVIASGGDDDEALELRGDEQGMRRVRAAIEAHAWLGLAMKRGGDPTATSI 203
>gi|195432108|ref|XP_002064068.1| GK19906 [Drosophila willistoni]
gi|195457390|ref|XP_002075548.1| GK21207 [Drosophila willistoni]
gi|194160153|gb|EDW75054.1| GK19906 [Drosophila willistoni]
gi|194171633|gb|EDW86534.1| GK21207 [Drosophila willistoni]
Length = 199
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +++ R + F++ D + + +N V+LW E F
Sbjct: 8 LLVIGESGVGKSSLIRRFVENKFDENHDVTIGMDFKSKVMNVDGIDYKVALWDTAGAERF 67
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVD 163
RSL S AL ++V+++ + TL L+ W+ +D ++ +GNK+D
Sbjct: 68 --RSLTPSFYRKALGAILVYDITNRDTLVKLEAWLAELDSYSDNPNIAIIVVGNKID 122
>gi|89027974|gb|ABD59353.1| small GTP binding protein Rab1A [Saccharum officinarum]
Length = 207
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R ++ D+ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEMEGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNAKQWLSEIDRYANDSVCKLLVGNKCDLAESRT 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|449703887|gb|EMD44244.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 196
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-------SSELLVNGWTINTKYYTADVSLWM 104
+++IG S+VGK ++R +S F + + S S E+ VNG + + +W
Sbjct: 5 LIMIGESSVGKTCCMNRFVSDQFSEVTKSTVGVGMVSKEMEVNGIKV-------KLQIWD 57
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID-LQKFEILLCIGNKVD 163
E F+ S V++F++++ + + + +W+ + + +++ +L+ GNK D
Sbjct: 58 TAGQERFATLSSNYFRNAMGGVIMFDVSNRQSFENVSNWIDACNKIEEKRVLVLAGNKTD 117
Query: 164 LLPGHPVHAEYRRRLLKREESSA 186
L R++ +EE A
Sbjct: 118 L----------DERVITKEEGEA 130
>gi|115312968|gb|AAI24015.1| rab12 protein [Xenopus (Silurana) tropicalis]
Length = 313
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 114 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 173
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ + +++V+++ T + L W+ ID E LL +GNK+D
Sbjct: 174 NSITSAYYRSAKGIILVYDITKKETFEDLPKWMKMIDKYASEEAELLLVGNKLD 227
>gi|407043019|gb|EKE41681.1| rab-19, putative [Entamoeba nuttalli P19]
Length = 206
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L RL F+ +S + + + + +W A E F
Sbjct: 8 ILLIGESGVGKTAMLQRLTQGTFDGIYTASVGVDLKTKIVEINGEEVIMEIWDAAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPV 170
+ A V+VF+L D ++ + + +W+ ++ I+ +GNK DL V
Sbjct: 68 RSVTQSYYRGTHAAVIVFDLTDKTSFEMVGYWLSEMEKDNNRPIIALVGNKSDLSNARTV 127
Query: 171 HAEYRR 176
E R
Sbjct: 128 PIEVIR 133
>gi|402858726|ref|XP_003893843.1| PREDICTED: ras-related protein Rab-4A [Papio anubis]
Length = 218
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|355559189|gb|EHH15969.1| hypothetical protein EGK_02156, partial [Macaca mulatta]
Length = 209
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 6 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 66 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 120
>gi|339522177|gb|AEJ84253.1| Ras-related protein Rab-4A [Capra hircus]
Length = 213
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
S+R AL +V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 71 RSVRRSYYRGAAGAL-LVYDITSQETYNALTNWLTDARMLGSQNIVIILC-GNKKDL 125
>gi|116793841|gb|ABK26899.1| unknown [Picea sitchensis]
gi|224286684|gb|ACN41045.1| unknown [Picea sitchensis]
Length = 203
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G S+VGK +L R ++ ++ S+ + T+ T +W E F
Sbjct: 12 VLLVGDSSVGKSCLLLRFTEDSYMESYISTIGVDFKIKTVELDGKTIKFQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++V+++ D+ + D +KHW+ I+ + ++ +GNK DL
Sbjct: 72 KTVTSSYYRGAHGIIIVYDITDMDSFDHVKHWLTEIERYTSDNVNMILVGNKCDLAEKRA 131
Query: 170 VHAE 173
V +
Sbjct: 132 VEQQ 135
>gi|432942757|ref|XP_004083059.1| PREDICTED: ras-related protein Rab-19-like isoform 1 [Oryzias
latipes]
Length = 222
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG +NVGK ++ S F + ++ + T++ + + +W E F
Sbjct: 18 IILIGDTNVGKTCVVQNFKSGVFSEKQQNTIGVDFTVRTLDIEGKKVKMQVWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ ++ +++ +T D++ HW+ ++L +L+ IGNK DL
Sbjct: 78 RTITQSYYRSAHGAMIAYDITRRATFDSVSHWIREVELYGAANVVLVLIGNKCDL 132
>gi|550068|gb|AAA60244.1| GTP-binding protein [Homo sapiens]
Length = 213
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 125
>gi|397605930|gb|EJK59155.1| hypothetical protein THAOC_20656 [Thalassiosira oceanica]
Length = 206
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV--- 100
A+ + + +L+IG S VGK +L R A+DS S + I+ K +V
Sbjct: 6 AAYDMQVKLLMIGDSGVGKTCLLLRY-------ANDSFSPTFITTIGIDFKIKNVEVDGK 58
Query: 101 ----SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI----DLQKF 152
+W E F + +++V+++ D + +++++W+ I D+
Sbjct: 59 RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVN 118
Query: 153 EILLCIGNKVDLLPGHPVHAEYRRRLLK 180
+IL +GNK D+L V E ++L K
Sbjct: 119 KIL--VGNKCDMLDEKVVSTEEGQKLAK 144
>gi|449278080|gb|EMC86047.1| Ras-related protein Rab-4A, partial [Columba livia]
Length = 212
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 10 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 70 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 124
>gi|401623607|gb|EJS41700.1| vps21p [Saccharomyces arboricola H-6]
Length = 210
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +I+ R +S +F + + + + L TIN +T +W E
Sbjct: 10 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--HTVKFEIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ + +HWV + Q + I+ +GNKVD+L
Sbjct: 68 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKVDMLQ- 126
Query: 168 HPVHAEYRRRLLKREES 184
E R + REE
Sbjct: 127 -----EGGERKVAREEG 138
>gi|291415916|ref|XP_002724195.1| PREDICTED: RAB3D, member RAS oncogene family-like [Oryctolagus
cuniculus]
Length = 217
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG+S+VGK + L R +F A S+ + T+ + +W E +
Sbjct: 25 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++V+++ + + +A++ W I ++ ++ +GNK DL
Sbjct: 85 RTITTAYYRGAMGFLLVYDIANQESFNAVQDWATQIKTYSWDNAQVILVGNKCDLEDERA 144
Query: 170 VHAEYRRRL 178
V AE RRL
Sbjct: 145 VPAEDGRRL 153
>gi|123476237|ref|XP_001321292.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121904115|gb|EAY09069.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 194
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 13/157 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IGSS VGK IL RL+ F S S+ + TI + +W E F
Sbjct: 7 FIVIGSSGVGKTAILKRLVDDIFTGESQSTIGVEFIATTIEVDGQPVKLQIWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPGHP 169
+ +++VF+L D + + L W+ + ++ IGNK DL
Sbjct: 67 RSIAKAYFRSAVGVLLVFDLTDRKSFEDLNQWLNDVHSLCDPNAVVTLIGNKSDL----- 121
Query: 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206
+ R + + E+ A Q ++ E S+L GD
Sbjct: 122 ----HTSRAITQSEAEAFAQMHQ--LTYLETSALGGD 152
>gi|440636052|gb|ELR05971.1| rab family, other [Geomyces destructans 20631-21]
Length = 236
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 41 TDRASLEKRPG----ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY 96
TDR S +P ++++G + VGK +++ R ++ +F++ + + N
Sbjct: 2 TDRTSGTPKPSSSVKLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCNLPSR 61
Query: 97 TADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-- 153
T +W E F S+ + + +ALV V++L ++L KHWV + Q
Sbjct: 62 TIKFEIWDTAGQERFASLAPMYYRNAQSALV-VYDLTKPTSLIKAKHWVAELQRQASPGI 120
Query: 154 ILLCIGNKVDL 164
++ +GNK+DL
Sbjct: 121 VIALVGNKLDL 131
>gi|221057099|ref|XP_002259687.1| GTPase [Plasmodium knowlesi strain H]
gi|193809759|emb|CAQ40461.1| GTPase, putative [Plasmodium knowlesi strain H]
Length = 200
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + D+ S+ + TI + + +W E F
Sbjct: 11 ILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGNKVDLL 165
+ +++V+++ D + + +K+W+ I D+QK + IGNK+DL
Sbjct: 71 RTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDVQK----ILIGNKIDLK 126
Query: 166 PGHPVHAEYRRRL 178
V E + L
Sbjct: 127 NDRNVSYEEGKEL 139
>gi|183231616|ref|XP_656067.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|169802399|gb|EAL50646.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
Length = 203
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSS---ELLVNGWTINTKYYTADVSLWMAHLH 108
IL+IG + VGK +L+R F+D S+S +++ + +TK + ++
Sbjct: 14 ILVIGEAGVGKTCLLTRFTEDKFDDQEPSTSTNFKVIDVDISESTKMKNIKLEIYDTAGQ 73
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
E F I + + + +VF+L D ++ L +W I +++ IGNK DL
Sbjct: 74 ERFRILTSSFYRKSCGIFLVFDLTDETSFKNLTNWARDITYYASPKCVVVLIGNKSDL 131
>gi|121543895|gb|ABM55612.1| putative RAB1 [Maconellicoccus hirsutus]
Length = 203
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + T++ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTVDLDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVD 163
+ +++V++ DL + + LK W+ +D E + L +GNK D
Sbjct: 71 RTITSSYYRGAHGIIIVYDCTDLESFNNLKQWLEEVDRYACENVNKLLVGNKCD 124
>gi|50082741|gb|AAT70065.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNIKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DLL + E
Sbjct: 114 IPEGCVKILC--GNKLDLLNERAIITE 138
>gi|393231749|gb|EJD39338.1| GTP-binding protein ypt1 [Auricularia delicata TFB-10046 SS5]
Length = 204
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ T +K W+ ID E + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDMDTFTNVKQWLQEIDRYASEGVNKLLVGNKSDLTAKKV 131
Query: 170 VH 171
V
Sbjct: 132 VE 133
>gi|392512970|emb|CAD26988.2| GTP-BINDING PROTEIN [Encephalitozoon cuniculi GB-M1]
Length = 198
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSSNVGK T++S+ L + + + L TI + + LW E F
Sbjct: 7 IVFLGSSNVGKTTLMSQYLHQEVQKSYGPTIGLDFVSTTIVVSGHRVRLQLWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL------QKFEILLCIGNKVDL 164
+ + ++VF++ D + +++ HW+ ++ ++ IL+ +GNK DL
Sbjct: 67 NSIIPNYTRNSFLAIIVFDMKDKGSFESIDHWINTLTKANDSSGRRVRILI-VGNKKDL 124
>gi|160222046|sp|P05714.2|RAB4A_RAT RecName: Full=Ras-related protein Rab-4A
Length = 213
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 125
>gi|154276338|ref|XP_001539014.1| GTP-binding protein YPT52 [Ajellomyces capsulatus NAm1]
gi|150414087|gb|EDN09452.1| GTP-binding protein YPT52 [Ajellomyces capsulatus NAm1]
Length = 285
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G + VGK +++ R ++ +F++ + TI + T SL
Sbjct: 16 LVLLGEAAVGKSSLVLRFVNNDFQENKEP---------TIGAAFLTQKCSLPNRTIKFEI 66
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGN 160
W E F+ + A ++V++L S+L KHWV + Q ++ +GN
Sbjct: 67 WDTAGQERFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGN 126
Query: 161 KVDLLPGHPVHAEYRR---------RLLKREESSADPDFCQSGISETEGSSLLGDEEPSW 211
K+DL P A + + S PD + G SE+ + G+E
Sbjct: 127 KIDLTNEDPSAAGAAKIPDTQTWPPGSRRSATGSPGPDASEGGDSESSVADRDGEEGGEG 186
Query: 212 EIRRSC 217
++R S
Sbjct: 187 DLRDSA 192
>gi|90103015|sp|Q2TBH7.2|RAB4A_BOVIN RecName: Full=Ras-related protein Rab-4A
Length = 213
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 125
>gi|29337213|sp|P20338.2|RAB4A_HUMAN RecName: Full=Ras-related protein Rab-4A
Length = 213
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 125
>gi|326915557|ref|XP_003204082.1| PREDICTED: ras-related protein Rab-4A-like, partial [Meleagris
gallopavo]
Length = 207
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 5 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 64
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 65 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 119
>gi|124506171|ref|XP_001351683.1| Rab1b, GTPase [Plasmodium falciparum 3D7]
gi|13375179|emb|CAC34553.1| putative GTPase [Plasmodium falciparum 3D7]
gi|23504611|emb|CAD51490.1| Rab1b, GTPase [Plasmodium falciparum 3D7]
Length = 200
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + D+ S+ + TI + + +W E F
Sbjct: 11 ILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGNKVDLL 165
+ +++V+++ D + + +K+W+ I D+QK + IGNK+DL
Sbjct: 71 RTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDVQK----ILIGNKIDLK 126
Query: 166 PGHPVHAEYRRRL 178
V E + L
Sbjct: 127 NDRNVSYEEGKEL 139
>gi|56790112|dbj|BAD82852.1| small GTPase EhRabP2 [Entamoeba histolytica]
Length = 201
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSS---ELLVNGWTINTKYYTADVSLWMAHLH 108
IL+IG + VGK +L+R F+D S+S +++ + +TK + ++
Sbjct: 12 ILVIGEAGVGKTCLLTRFTEDKFDDQEPSTSTNFKVIDVDISESTKMKNIKLEIYDTAGQ 71
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
E F I + + + +VF+L D ++ L +W I +++ IGNK DL
Sbjct: 72 ERFRILTSSFYRKSCGIFLVFDLTDETSFKNLTNWARDITYYASPKCVVVLIGNKSDL 129
>gi|85014147|ref|XP_955569.1| GTP-binding protein [Encephalitozoon cuniculi GB-M1]
gi|449329976|gb|AGE96243.1| GTP-binding protein [Encephalitozoon cuniculi]
Length = 217
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSSNVGK T++S+ L + + + L TI + + LW E F
Sbjct: 26 IVFLGSSNVGKTTLMSQYLHQEVQKSYGPTIGLDFVSTTIVVSGHRVRLQLWDTAGQERF 85
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL------QKFEILLCIGNKVDL 164
+ + ++VF++ D + +++ HW+ ++ ++ IL+ +GNK DL
Sbjct: 86 NSIIPNYTRNSFLAIIVFDMKDKGSFESIDHWINTLTKANDSSGRRVRILI-VGNKKDL 143
>gi|332252118|ref|XP_003275201.1| PREDICTED: ras-related protein Rab-4A isoform 2 [Nomascus
leucogenys]
Length = 218
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|328866963|gb|EGG15346.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 199
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R F D+ S+ + TI + +W E F
Sbjct: 34 ILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKRIKLQIWDTAGQERF 93
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ L++V+++ + + +++K W+ ID+ +F + L +GNK DL
Sbjct: 94 KTITTSYYRGAHGLIIVYDITSMDSFNSIKRWL--IDVDRFASPSVLKLIVGNKCDLNNK 151
Query: 168 HPVHAEYRRRL 178
V + ++
Sbjct: 152 RAVDFKIAKKF 162
>gi|47209142|emb|CAF90455.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + T++ T + +W E F
Sbjct: 6 LLLIGDSGVGKSCLLLRFADGAYTDSYISTIGVDFKIRTVDMDGKTVKLQIWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +V+V+++ + ++ D ++ W+ I+ E + L +GNK DLL
Sbjct: 66 RTITSSYYRGAHGIVLVYDVTEQASFDNVRLWMDEIERYACEDVSRLLVGNKSDLLAQKV 125
Query: 170 VHA 172
V A
Sbjct: 126 VDA 128
>gi|407867485|gb|EKG08588.1| small GTP-binding protein Rab11, putative,Rab11 GTPase, putative
[Trypanosoma cruzi]
Length = 217
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIG S VGK +++R + F + ++ + +I + A V +W E F
Sbjct: 10 VVIIGDSGVGKSNLMTRYTANEFSQDTPATIGVEFMTKSIKIEGRDAKVQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSIPTWLQ--ELRVFVPATCSIFLIGNKCDL 124
>gi|169596668|ref|XP_001791758.1| hypothetical protein SNOG_01101 [Phaeosphaeria nodorum SN15]
gi|111071476|gb|EAT92596.1| hypothetical protein SNOG_01101 [Phaeosphaeria nodorum SN15]
Length = 222
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 19/143 (13%)
Query: 43 RASLEKRPG----------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI- 91
R +RPG ++++G S VGK +++ R + F+D +S+ TI
Sbjct: 4 RVQQGQRPGGSGSRFAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIA 63
Query: 92 ---NTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
NT T +W E + + V+V+++ ++LD K WV +
Sbjct: 64 LDENT---TVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQ 120
Query: 149 LQKFE--ILLCIGNKVDLLPGHP 169
Q E I+ GNK+DL+ P
Sbjct: 121 RQANENIIIALAGNKLDLVTESP 143
>gi|56757432|gb|AAW26884.1| SJCHGC02879 protein [Schistosoma japonicum]
Length = 290
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G+S VGK +IL L+ F + S+ + + + + + +W E++
Sbjct: 78 VLLLGNSGVGKTSILRALVGETFFQTTISTIGIDLIKRIFTVENHRVQLEVWDTAGQEQY 137
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDAL-KHWVPSID--LQKFEILLCIGNKVDLLPG 167
SI SL + ++V+++ D+ + D + KHW+ S+D + + + NK+D++
Sbjct: 138 NSIVSLHFRE-AKCFIIVYDVTDVESFDQIRKHWLRSVDEHMDDAVPVFFVANKIDMIKD 196
Query: 168 HPVHAEYRRRLLKREES 184
V E ++L ++ +
Sbjct: 197 KKVSTEQGQQLTSQQAA 213
>gi|57010|emb|CAA30006.1| unnamed protein product [Rattus sp.]
Length = 213
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGQKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 71 RSVTTSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 125
>gi|72392927|ref|XP_847264.1| small GTP-binding protein Rab11 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|7939615|gb|AAF70820.1|AF152531_1 small GTPase Rab11 [Trypanosoma brucei]
gi|11611729|gb|AAG39034.1|AF234188_1 RAB11A GTPase [Trypanosoma brucei]
gi|62176098|gb|AAX70217.1| small GTP-binding protein Rab11 [Trypanosoma brucei]
gi|70803294|gb|AAZ13198.1| small GTP-binding protein Rab11 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 216
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G S VGK +++R + F + ++ + +I + A V +W E F
Sbjct: 10 VVIVGDSGVGKSNLMTRYTADEFSQDTPATIGVEFMTKSIKIEGRDAKVQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSISTWLQ--ELRAFVPATCSIFLIGNKCDL 124
>gi|332372776|gb|AEE61530.1| unknown [Dendroctonus ponderosae]
Length = 204
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK ++L R NF+ + + +N + T +++W E F
Sbjct: 11 ILIIGESGVGKSSLLLRFTEDNFDPEQTLTIGVDFKTKKLNVEGNTVKLAIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDL 164
+ ++VF++ +T L+ W+ ++ + + + IGNK+D+
Sbjct: 71 RTLTPSYYRDAQGAILVFDVGSQATFAKLETWLNELETYSTKNNIVKMIIGNKIDV 126
>gi|154333217|ref|XP_001562869.1| putative small GTP-binding protein Rab11 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059874|emb|CAM37302.1| putative small GTP-binding protein Rab11 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 208
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +++R F + S+ + +I + A + +W E F
Sbjct: 10 IVLIGDSGVGKSNLMTRYTMSEFSQETPSTIGVEFMTKSIKIEDRDAKIQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F + C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSIPTWLQ--ELRVFVPVTCCIFLIGNKCDL 124
>gi|311271203|ref|XP_001925518.2| PREDICTED: ras-related protein Rab-4A-like [Sus scrofa]
gi|410975123|ref|XP_003993984.1| PREDICTED: ras-related protein Rab-4A isoform 1 [Felis catus]
gi|410975125|ref|XP_003993985.1| PREDICTED: ras-related protein Rab-4A isoform 2 [Felis catus]
gi|417397315|gb|JAA45691.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 218
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|409077313|gb|EKM77679.1| hypothetical protein AGABI1DRAFT_114980 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426193199|gb|EKV43133.1| septum-promoting GTP-binding protein 1 [Agaricus bisporus var.
bisporus H97]
Length = 219
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 34 GRQEMDSTD-RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--T 90
G Q ++ D R S+ + G+ +G S +GK +++ + + +F++ D L VN T
Sbjct: 17 GSQNAENGDERNSVVIKVGM--VGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKT 72
Query: 91 INTKYYTADVSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSID 148
I+ + T S+W EF + LP + + A++ +F+L+ STL+++K W +
Sbjct: 73 ISVRRTTITFSIWDLGGQREF-VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARG 131
Query: 149 LQKFEILLCIGNKVDLLPGHP 169
K I IG K D P
Sbjct: 132 FNKTAIPFLIGTKFDQFATFP 152
>gi|84579867|ref|NP_001033774.1| ras-related protein Rab-4A [Bos taurus]
gi|240849289|ref|NP_001155335.1| ras-related protein Rab-4A [Ovis aries]
gi|83759139|gb|AAI10199.1| RAB4A, member RAS oncogene family [Bos taurus]
gi|238566742|gb|ACR46626.1| RAB4A [Ovis aries]
gi|296472279|tpg|DAA14394.1| TPA: ras-related protein Rab-4A [Bos taurus]
Length = 218
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|50082739|gb|AAT70064.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSQTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++VF++ D +L+ + W P
Sbjct: 55 QIDLKNVKLHIWELPKAENSKSVTSIYMKN-CSCVIVVFDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DL + E
Sbjct: 114 IPEGCVKILC--GNKLDLSNERAITTE 138
>gi|397635930|gb|EJK72074.1| hypothetical protein THAOC_06432 [Thalassiosira oceanica]
Length = 224
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+L+IG + VGK ++L R F++ S+ + V +N+K +++W E
Sbjct: 17 LLMIGDAAVGKSSMLIRFTDDAFDEHIQSTIGVDFKVKHLELNSK--RIKLTVWDTAGQE 74
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-----ILLCIGNKVDL 164
F + +VMV+++ + D L HW+ I L + L +GNK+DL
Sbjct: 75 RFRTLTSSYYRGAQGVVMVYDVTRRDSFDNLDHWLKEIQLYSPNSGEGVVKLLVGNKIDL 134
Query: 165 LPGHPVHAEYRRRLLKREES 184
P R + R+E+
Sbjct: 135 ----PEMGGEHERQVDRDEA 150
>gi|320168533|gb|EFW45432.1| GTP-binding protein rab11 [Capsaspora owczarzaki ATCC 30864]
Length = 243
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
++I+GS VGK +++ R + + A+D +S + G + T+ T D + +W
Sbjct: 32 VVILGSQGVGKTSLVLRYVQGTY--AADITSTI---GASFMTRKMTVDRCQVRMQIWDTA 86
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
E F + A ++V+++ D T D +K WV + ++ +L+ +GNK D+
Sbjct: 87 GQERFRSMAPMYYRGANAALLVYDITDEQTFDDIKSWVKELQHNVDSDIVLVLVGNKSDM 146
Query: 165 LPGHPVHAE 173
V E
Sbjct: 147 ASQRKVSGE 155
>gi|123496307|ref|XP_001326936.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|67944373|gb|AAY83822.1| small Rab GTPase RabC7 [Trichomonas vaginalis]
gi|121909858|gb|EAY14713.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 185
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G + VGK ++ RL S + D + ++ I T++ + +W E+F
Sbjct: 3 IVLVGDTQVGKTCLVKRLTSGTYTDNNPATIGAAFQNCIIQTEHGNVSLQIWDTAGQEKF 62
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVDLL 165
+ + ++ F+L + ++ + L+ W + + L+ +GNK DL+
Sbjct: 63 RALAPMYYRSASVAILCFDLTNPTSFNGLEQWAMELTEKASYTLKLVVVGNKKDLI 118
>gi|426228109|ref|XP_004008157.1| PREDICTED: ras-related protein Rab-19 [Ovis aries]
Length = 217
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ S + +A ++ + V I+ K + +W E
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGK--KVKMQVWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F + A ++ ++L ST +++ HW+ I+ +++ IGNK DL
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDL 134
>gi|50741401|ref|XP_419573.1| PREDICTED: ras-related protein Rab-4A [Gallus gallus]
Length = 218
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|357121701|ref|XP_003562556.1| PREDICTED: ras-related protein RABA2a-like [Brachypodium
distachyon]
Length = 221
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +LSR F S S+ + TI + T +W E +
Sbjct: 21 IVLIGDSGVGKSNLLSRFTKNTFSLDSKSTIGVEFATRTIEVEGKTIKAQIWDTAGQERY 80
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGH 168
+I S + AL +V+++ +T D +K W+ + +++ IGNK+DL
Sbjct: 81 RAITSAYYRGAVGAL-LVYDVTKGATFDNVKRWLKELRDHADSNIVIMLIGNKMDLKHLR 139
Query: 169 PVHAEYRRRLLKRE 182
V E +RE
Sbjct: 140 SVAQEDAASFAERE 153
>gi|345798851|ref|XP_536353.3| PREDICTED: ras-related protein Rab-4A [Canis lupus familiaris]
Length = 218
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|221116035|ref|XP_002155975.1| PREDICTED: ras-related protein Rab-1A-like [Hydra magnipapillata]
Length = 202
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D T + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQETFNNVKQWLQEIDRYACESVNKLLVGNKCDL 125
>gi|77404180|ref|NP_037151.2| ras-related protein Rab-4A [Rattus norvegicus]
gi|38303943|gb|AAH62016.1| RAB4A, member RAS oncogene family [Rattus norvegicus]
Length = 218
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|19923260|ref|NP_004569.2| ras-related protein Rab-4A isoform 1 [Homo sapiens]
gi|383873316|ref|NP_001244480.1| ras-related protein Rab-4A [Macaca mulatta]
gi|296230239|ref|XP_002760619.1| PREDICTED: ras-related protein Rab-4A [Callithrix jacchus]
gi|297661712|ref|XP_002809375.1| PREDICTED: ras-related protein Rab-4A [Pongo abelii]
gi|332252116|ref|XP_003275200.1| PREDICTED: ras-related protein Rab-4A isoform 1 [Nomascus
leucogenys]
gi|397508091|ref|XP_003824504.1| PREDICTED: ras-related protein Rab-4A [Pan paniscus]
gi|402858724|ref|XP_003893842.1| PREDICTED: ras-related protein Rab-4A [Papio anubis]
gi|403300136|ref|XP_003940812.1| PREDICTED: ras-related protein Rab-4A [Saimiri boliviensis
boliviensis]
gi|20379044|gb|AAM21082.1|AF498934_1 small GTP binding protein RAB4A [Homo sapiens]
gi|12803249|gb|AAH02438.1| RAB4A, member RAS oncogene family [Homo sapiens]
gi|13279194|gb|AAH04309.1| RAB4A, member RAS oncogene family [Homo sapiens]
gi|50981015|gb|AAT91347.1| HRES-1 antisense Rab [Homo sapiens]
gi|117644706|emb|CAL37818.1| hypothetical protein [synthetic construct]
gi|117645990|emb|CAL38462.1| hypothetical protein [synthetic construct]
gi|119590296|gb|EAW69890.1| RAB4A, member RAS oncogene family, isoform CRA_b [Homo sapiens]
gi|119590300|gb|EAW69894.1| RAB4A, member RAS oncogene family, isoform CRA_b [Homo sapiens]
gi|123984433|gb|ABM83562.1| RAB4A, member RAS oncogene family [synthetic construct]
gi|123998397|gb|ABM86800.1| RAB4A, member RAS oncogene family [synthetic construct]
gi|189054036|dbj|BAG36543.1| unnamed protein product [Homo sapiens]
gi|208965410|dbj|BAG72719.1| RAB4A, member RAS oncogene family [synthetic construct]
gi|380815226|gb|AFE79487.1| ras-related protein Rab-4A [Macaca mulatta]
gi|383420427|gb|AFH33427.1| ras-related protein Rab-4A [Macaca mulatta]
gi|384948556|gb|AFI37883.1| ras-related protein Rab-4A [Macaca mulatta]
gi|410227434|gb|JAA10936.1| RAB4A, member RAS oncogene family [Pan troglodytes]
gi|410261354|gb|JAA18643.1| RAB4A, member RAS oncogene family [Pan troglodytes]
gi|410292912|gb|JAA25056.1| RAB4A, member RAS oncogene family [Pan troglodytes]
gi|410338349|gb|JAA38121.1| RAB4A, member RAS oncogene family [Pan troglodytes]
Length = 218
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|357135065|ref|XP_003569132.1| PREDICTED: ras-related protein RABD1-like [Brachypodium distachyon]
Length = 205
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R + D S+ + T+ + + +W E F
Sbjct: 12 LLLIGDSSVGKSCLLLRFADDAYVDTYISTIGVDFKIRTVELDGKSVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL+
Sbjct: 72 RTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYASDSVCKLLVGNKCDLVDSKV 131
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 132 VDTEEAKAL 140
>gi|13537433|dbj|BAB40671.1| small GTPase RabD1 [Entamoeba histolytica]
Length = 196
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 25/143 (17%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-------SSELLVNGWTINTKYYTADVSLWM 104
+++IG S+VGK ++R +S F + + S S E+ VNG + + +W
Sbjct: 5 LIMIGESSVGKTCCMNRFVSDQFSEVTKSTVGVGMVSKEMEVNGIKV-------KLQIWD 57
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID-LQKFEILLCIGNKVD 163
E F+ S V++F++++ + + + +W+ + +++ +L+ GNK D
Sbjct: 58 TAGQERFATLSSNYFRNAMGGVIMFDVSNRQSFENVSNWIDGCNKIEEKRVLVLAGNKTD 117
Query: 164 LLPGHPVHAEYRRRLLKREESSA 186
L R++ +EE A
Sbjct: 118 L----------DERVITKEEGEA 130
>gi|40225607|gb|AAH09227.2| RAB13 protein, partial [Homo sapiens]
Length = 195
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 3 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 62
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 63 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 122
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 123 VQKEQADKLAR 133
>gi|67466012|ref|XP_649164.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56465533|gb|EAL43777.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790174|dbj|BAD82883.1| small GTPase EhRabX35 [Entamoeba histolytica]
gi|449708662|gb|EMD48081.1| small GTPase EhRabX35, putative [Entamoeba histolytica KU27]
Length = 194
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
K+ + ++G S+VGK +I + + FE S + + N Y V + +
Sbjct: 5 KQIKVTLVGESSVGKSSICNVISKGVFEKTSATIGAEFIK---FNRTYKEQQVLVSLFDT 61
Query: 108 HEEFSIRSLPIS--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDL 164
E S+P S + A++MV++++ T + L++W+ + + + ++C+GNK+DL
Sbjct: 62 SGEERYHSIPQSYYRKSNAVIMVYDISRKETFEQLEYWLNDVKGNCEIDTIICVGNKIDL 121
>gi|119187423|ref|XP_001244318.1| hypothetical protein CIMG_03759 [Coccidioides immitis RS]
Length = 391
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 142 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 199
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 200 RFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDL 256
>gi|395836166|ref|XP_003791035.1| PREDICTED: ras-related protein Rab-4A [Otolemur garnettii]
Length = 218
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|327307688|ref|XP_003238535.1| Ras family protein [Trichophyton rubrum CBS 118892]
gi|326458791|gb|EGD84244.1| Ras family protein [Trichophyton rubrum CBS 118892]
Length = 274
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL G
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGNKLDLTSG 135
Query: 168 HPVHA 172
A
Sbjct: 136 DGTSA 140
>gi|297833958|ref|XP_002884861.1| hypothetical protein ARALYDRAFT_478519 [Arabidopsis lyrata subsp.
lyrata]
gi|297330701|gb|EFH61120.1| hypothetical protein ARALYDRAFT_478519 [Arabidopsis lyrata subsp.
lyrata]
Length = 205
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R + D+ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ ++ + + +K W+ ID E + L IGNK D++
Sbjct: 71 RTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVENKV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSTETGKAL 139
>gi|194206066|ref|XP_001498005.2| PREDICTED: ras-related protein Rab-4A-like [Equus caballus]
Length = 218
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|156088339|ref|XP_001611576.1| Ras family protein [Babesia bovis]
gi|154798830|gb|EDO08008.1| Ras family protein [Babesia bovis]
Length = 227
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSS--ELLVNGWTINTKY 95
M +T + +R I+++G N GK +I++R + +F A ++ + L T+N K
Sbjct: 9 MGTTGGSVSSQRIKIVLLGEQNTGKTSIVTRFVYDHFVPAYAATIGIDFLSKVVTVNGK- 67
Query: 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-- 153
T + LW E F +A ++V+++ + + +K W+ I + +
Sbjct: 68 -TMRLQLWDTAGQERFRTLMPSYIRDSSAAIVVYDITSPESFEKVKDWIKDIKELRGDKA 126
Query: 154 ILLCIGNKVDLLPGHPV 170
I++ +GNK DLL V
Sbjct: 127 IIMIVGNKTDLLDKRKV 143
>gi|125981067|ref|XP_001354540.1| GA16152 [Drosophila pseudoobscura pseudoobscura]
gi|195170033|ref|XP_002025818.1| GL18325 [Drosophila persimilis]
gi|54642849|gb|EAL31593.1| GA16152 [Drosophila pseudoobscura pseudoobscura]
gi|194110671|gb|EDW32714.1| GL18325 [Drosophila persimilis]
Length = 197
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +++ R + F++ D + + +N V+LW E F
Sbjct: 8 LLVIGESGVGKSSLIRRFVENKFDENHDVTIGMDFKSKVMNVDGIDYKVALWDTAGAERF 67
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLP 166
RSL S AL ++V+++ + +L L+ W+ +D ++ +GNK+D
Sbjct: 68 --RSLTPSFYRKALGAILVYDITNRDSLVKLEAWLAELDSYSDNPNIAIIVVGNKID--- 122
Query: 167 GHPVHAEYRRRLLKREES 184
+ R++ REE
Sbjct: 123 --------QERVVDREEG 132
>gi|407034128|gb|EKE37079.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 203
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN------TKYYTADVSLWMA 105
IL+IG + VGK +L+R F+D S+S N I+ TK + ++
Sbjct: 14 ILVIGEAGVGKTCLLTRFTEDKFDDQEPSTS---TNFKVIDVDIPESTKMKNIKLEIYDT 70
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
E F I + + + +VF+L D ++ L +W I +++ IGNK D
Sbjct: 71 AGQERFRILTSSFYRKSCGIFLVFDLTDETSFKNLTNWARDITYYASPKCVVVLIGNKSD 130
Query: 164 L 164
L
Sbjct: 131 L 131
>gi|344247266|gb|EGW03370.1| Ras-related protein Rab-4A [Cricetulus griseus]
Length = 218
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|71410719|ref|XP_807641.1| small GTP-binding protein Rab11 [Trypanosoma cruzi strain CL
Brener]
gi|70871685|gb|EAN85790.1| small GTP-binding protein Rab11, putative [Trypanosoma cruzi]
Length = 217
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIG S VGK +++R + F + ++ + +I + A V +W E F
Sbjct: 10 VVIIGDSGVGKSNLMTRYTANEFSQDTPATIGVEFMTKSIKIEGRDAKVQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSIPTWLQ--ELRVFVPATCSIFLIGNKCDL 124
>gi|407044411|gb|EKE42576.1| Ras family protein [Entamoeba nuttalli P19]
Length = 243
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWM 104
S E++ ++++G S+VGK ++R +S F + + ++ + V + + + +W
Sbjct: 52 SNEQKVKVIMVGESSVGKTCCMNRYVSNEFAEQTKATIGVGVGSKEVEVEGKQIKLQIWD 111
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPS-IDLQKFEILLCIGNKVD 163
E F+ + A +++F++++ + + + +WV I+ GNK+D
Sbjct: 112 TAGQERFATLTGNYFRNAMAAIIMFDVSNKESFENIPNWVEQCCKCDGKHIIFIAGNKID 171
Query: 164 L 164
L
Sbjct: 172 L 172
>gi|167390752|ref|XP_001739484.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165896757|gb|EDR24084.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 207
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSS--ELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S+VGK +++ + F ++ S+ + L + ++ Y V +W E
Sbjct: 16 LIVVGDSSVGKTSLIQMFANNQFSNSVVSTVGIDFLTKRYEVDGTTY--KVQIWDTAGQE 73
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPG 167
+F + V+++++ + ST DA+ +WV ++ +++ + +GNK DL
Sbjct: 74 KFRTIINSYYRGVQGAVLIYDVTNKSTFDAINYWVKNVQEFGEQVVGRILVGNKTDLEQH 133
Query: 168 HPVHAEYRRRL 178
V E + L
Sbjct: 134 RTVSTEMGQSL 144
>gi|351700653|gb|EHB03572.1| Ras-related protein Rab-33A [Heterocephalus glaber]
Length = 237
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R F D ++++ + T+ + V +W E F
Sbjct: 39 IIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERF 98
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL---LCIGNKVDL 164
+ + A+V V+++ +++ LK W+ D L + +GNK DL
Sbjct: 99 RKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECDGHAVPPLVPKVLVGNKCDL 155
>gi|341890273|gb|EGT46208.1| hypothetical protein CAEBREN_29374 [Caenorhabditis brenneri]
Length = 210
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G VGK ++ R S NF D ++ + T+N + +W E F
Sbjct: 13 IVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLNIDGKRVKLQIWDTGGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ +V+ +++ + +L+ W+ D+ KF + L IG K DL
Sbjct: 73 RTITQSYYRSANGIVLCYDMTCKQSFGSLQRWID--DVSKFAAPNVVKLLIGTKCDLEDQ 130
Query: 168 HPVHAE 173
V A+
Sbjct: 131 RAVEAD 136
>gi|241958896|ref|XP_002422167.1| GTP-binding protein, putative [Candida dubliniensis CD36]
gi|223645512|emb|CAX40171.1| GTP-binding protein, putative [Candida dubliniensis CD36]
Length = 219
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD--------SSSELLVNGWTI 91
S+D+++L K+ I+ +G +VGK ++++R + F++ S + L G TI
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSLITRFMYDTFDETYAATIGIDFLSKTMYLEEGKTI 61
Query: 92 NTKYYTADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
+ LW E F RSL I D A V+ +++ + + D L W+ +
Sbjct: 62 R-------LQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFDNLDKWIKDVK 111
Query: 149 LQKFE--ILLCIGNKVDL 164
L++ + I++ +GNK DL
Sbjct: 112 LERGDDVIIVLVGNKSDL 129
>gi|196002878|ref|XP_002111306.1| hypothetical protein TRIADDRAFT_55139 [Trichoplax adhaerens]
gi|190585205|gb|EDV25273.1| hypothetical protein TRIADDRAFT_55139 [Trichoplax adhaerens]
Length = 215
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
+LI+G S VGK +L R F+D S+ L G + K D + +W
Sbjct: 14 VLIVGDSGVGKTCVLLR-----FKDNDFQSTLLSTIGIDLVNKQVVVDDKKIMLQIWDTA 68
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGN 160
E + + + +++V+++ + D +++W+ I DL+ IL +GN
Sbjct: 69 GQERYKTLTKAFYRGTSGILLVYDITKKKSFDNIRYWMKCIADCYDGDLENAPILFIVGN 128
Query: 161 KVDL 164
K DL
Sbjct: 129 KNDL 132
>gi|219127381|ref|XP_002183915.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404638|gb|EEC44584.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 207
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
+++ A + + +L+IG S VGK +L R A+DS S + I+ K D
Sbjct: 4 ASNSAPYDMQIKLLMIGDSGVGKTCLLLRY-------ANDSFSPTFITTIGIDFKIKNVD 56
Query: 100 V-------SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI----D 148
V +W E F + +++V+++ D + +++++W+ I D
Sbjct: 57 VEGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHAD 116
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRL 178
+ +IL +GNK D+L V E ++L
Sbjct: 117 VHVNKIL--VGNKCDMLDEKVVSTEEGQKL 144
>gi|71417072|ref|XP_810463.1| small GTP-binding protein Rab11 [Trypanosoma cruzi strain CL
Brener]
gi|70874996|gb|EAN88612.1| small GTP-binding protein Rab11, putative [Trypanosoma cruzi]
Length = 217
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIG S VGK +++R + F + ++ + +I + A V +W E F
Sbjct: 10 VVIIGDSGVGKSNLMTRYTANEFSQDTPATIGVEFMTKSIKIEGRDAKVQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F C IGNK DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSIPTWLQ--ELRVFVPATCSIFLIGNKCDL 124
>gi|348575568|ref|XP_003473560.1| PREDICTED: ras-related protein Rab-4A-like [Cavia porcellus]
Length = 218
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQSIVIILC-GNKKDL 130
>gi|323448670|gb|EGB04565.1| hypothetical protein AURANDRAFT_32347 [Aureococcus anophagefferens]
Length = 196
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 44 ASLEKRPGILI----IGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
A+L ++P +++ +G S VGK T++ + + +D + + +I +
Sbjct: 2 AALAEKPNVMVKVGMVGDSQVGKTTMMVKYVENRLDDEYIQTLGVNFMEKSITLRNTEIT 61
Query: 100 VSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLC 157
S+W H EF + LP + + A++ +F+L+ STL ++K W + L + L
Sbjct: 62 FSIWDLGGHREF-LSMLPLVCNDAAAVLFMFDLSRKSTLTSIKEWYRQVRGLNRSAFALL 120
Query: 158 IGNKVDLLPGHPV--HAEYRRRLLKREESSADP 188
+G K D+ P AE R K ++ P
Sbjct: 121 VGTKYDVFVTLPPEEQAEIDRNARKFAKAMKAP 153
>gi|295668134|ref|XP_002794616.1| GTP-binding protein ypt5 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286032|gb|EEH41598.1| GTP-binding protein ypt5 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 214
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT-KYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDESTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ +S+LD K WV + Q E I+ GNK+DL+
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQVSSLDKAKSWVKELQRQANENIIIALAGNKLDLVMDS 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|167389318|ref|XP_001738914.1| rab10 [Entamoeba dispar SAW760]
gi|165897667|gb|EDR24752.1| rab10, putative [Entamoeba dispar SAW760]
Length = 203
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN------TKYYTADVSLWMA 105
IL+IG + VGK +L+R F+D S+S N I+ TK + ++
Sbjct: 14 ILVIGEAGVGKTCLLTRFTEDKFDDQEPSTS---TNFKVIDVDIPESTKMKNIKLEIYDT 70
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
E F I + + + +VF+L D ++ L +W I +++ IGNK D
Sbjct: 71 AGQERFRILTSSFYRKSCGIFLVFDLTDETSFKNLTNWARDITYYASPKCVVVLIGNKSD 130
Query: 164 L 164
L
Sbjct: 131 L 131
>gi|145257106|ref|XP_001401615.1| GTP-binding protein ypt5 [Aspergillus niger CBS 513.88]
gi|134058525|emb|CAL00734.1| unnamed protein product [Aspergillus niger]
gi|350632151|gb|EHA20519.1| hypothetical protein ASPNIDRAFT_54582 [Aspergillus niger ATCC 1015]
Length = 218
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDESTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E ++ GNK+DL+
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVIALAGNKLDLVTES 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|156095590|ref|XP_001613830.1| small GTPase Rab1A [Plasmodium vivax Sal-1]
gi|148802704|gb|EDL44103.1| small GTPase Rab1A, putative [Plasmodium vivax]
Length = 200
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + D+ S+ + TI + + +W E F
Sbjct: 11 ILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGNKVDLL 165
+ +++V+++ D + + +K+W+ I D+QK + IGNK+DL
Sbjct: 71 RTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDVQK----VLIGNKIDLK 126
Query: 166 PGHPVHAEYRRRL 178
V E + L
Sbjct: 127 NDRNVSYEEGKEL 139
>gi|383852551|ref|XP_003701790.1| PREDICTED: ras-related protein Rab-18-like [Megachile rotundata]
Length = 219
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
+L+IG SNVGK +I+ R F + S+ G TK T D +++W
Sbjct: 9 LLMIGESNVGKSSIILRFTEDEFYENMQSTV-----GMDYKTKQITIDGNMVKLAIWDTA 63
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL-LCIGNKVD 163
E F + ++V+++ D T L+ W+ ++ K +I+ + +GNK+D
Sbjct: 64 GQERFRTLTPSYYRDGQGAILVYDVTDRVTFVKLETWLNELNTYCNKTDIVKMVVGNKID 123
Query: 164 LLPGHPVHAEYRRRLLKREES 184
LP V E + +R ++
Sbjct: 124 -LPNREVSTEEGLQFARRHQT 143
>gi|320586194|gb|EFW98873.1| rab GTPase [Grosmannia clavigera kw1407]
Length = 219
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +I+ R + F+ +S TI + T +SL
Sbjct: 21 LVLLGESAVGKSSIVLRFVKDQFDSYRES---------TIGAAFLTQTISLDETTTVKFE 71
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ S+LD K WV + Q E I+ G
Sbjct: 72 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIIIALAG 131
Query: 160 NKVDLLPGHP 169
NK+DL+ P
Sbjct: 132 NKLDLVTEQP 141
>gi|300121600|emb|CBK22118.2| unnamed protein product [Blastocystis hominis]
Length = 182
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G S VGK ++L R F ++ S+ + T+ + + +W E F
Sbjct: 20 IVLVGDSGVGKSSLLLRFADGAFTESFISTIGVDFRFRTVEVLDKSVKLQIWDTAGQERF 79
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLC-IGNKVDLLPG 167
+ +++V+++ D T ++ W I QKF I +C IGNK DL
Sbjct: 80 RTITSAYYKGADGIMIVYDVTDTETFKDMEDWHKEI--QKFTDPGIPICIIGNKSDLTEK 137
Query: 168 HPVHAEYRRRLLKREESSADPDFCQS 193
V A + K SS + FC++
Sbjct: 138 KEVAAA----VGKEYASSLNASFCET 159
>gi|291413362|ref|XP_002722943.1| PREDICTED: RAB4A, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 235
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 33 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 92
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 93 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQSIVIILC-GNKRDL 147
>gi|427787123|gb|JAA59013.1| Putative rab18a member ras oncoprotein family [Rhipicephalus
pulchellus]
Length = 201
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG SNVGK ++L R F+ ++ + T+ A +++W E F
Sbjct: 12 ILIIGESNVGKSSLLLRFTDDVFDPNLAATIGVDFKVKTLTVDGNKAKLAIWDTAGSERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLPGH 168
+ ++V+++ + ST L HW+ ++ + + + +GNK+D
Sbjct: 72 RTLTPSYYRGAQGAILVYDVCNYSTFQKLDHWLAELETYCTRNNVVKMLVGNKIDKHENR 131
Query: 169 PVHAE----YRRR--LLKREESSADPDFCQSGISE 197
V E Y R+ +L E S+ D Q E
Sbjct: 132 VVTKEQGMNYARKHSMLFIEASAKTRDGVQCAFEE 166
>gi|359489460|ref|XP_002262618.2| PREDICTED: ras-related protein RABA3-like [Vitis vinifera]
Length = 235
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK ILSR F S S+ + T+ K +W E +
Sbjct: 28 VVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTRTVTIKSKVIKAQIWDTAGQERY 87
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
++ S L A+ +V+++ T D + WV + +++ +GNK DL+
Sbjct: 88 RAVTSAYYRGALGAM-LVYDITKRQTFDHVARWVEELRAHADTSIVIMLVGNKADLVDQR 146
Query: 169 PVHAE 173
V +E
Sbjct: 147 AVPSE 151
>gi|226291514|gb|EEH46942.1| GTP-binding protein ypt5 [Paracoccidioides brasiliensis Pb18]
Length = 217
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDESTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E I+ GNK+DL+
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIIIALAGNKLDLVMDS 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|123448104|ref|XP_001312785.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121894645|gb|EAX99855.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 150
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G + VGK +L+RL++ F+ S ++ + + T + +W E+
Sbjct: 3 IVLVGDTQVGKTCVLARLINKEFKSDSQATIGAAFQNYFLQTPAGFVQLQIWDTAGQEQ- 61
Query: 112 SIRSL-PISDQLTALVMVF-NLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLP 166
RSL P+ + ++ ++F ++ +L + ALK W+ + + + +I++ +GNK D L
Sbjct: 62 -SRSLAPMYYRAASVAILFYDVTNLKSFQALKDWMDELQEKAPVQLQIVI-VGNKCD-LE 118
Query: 167 GHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201
V ++ K+ ++ +C++ EGS
Sbjct: 119 DRVVSTTTAQQFAKQNGAAF---YCETSAKTGEGS 150
>gi|440292195|gb|ELP85437.1| rab9, putative [Entamoeba invadens IP1]
Length = 199
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
L K I+++G S GK I+ R ++ F + S ++ N TIN +W A
Sbjct: 29 LSKGVKIVLLGESATGKTCIVHRYITNEFTNQS-TTVGCAFNSKTINYNNKIIKYEIWDA 87
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVD 163
E + S T ++VF++ T +A+ WV + + ++ +GNK D
Sbjct: 88 AGQERYRSLSAIYYRNATVALLVFDITRQETFNAVTDWVDELKQNTSNSTMIFIVGNKCD 147
Query: 164 L 164
L
Sbjct: 148 L 148
>gi|340502128|gb|EGR28843.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 189
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 28/131 (21%)
Query: 55 IGSSNVGKRTIL--------------SRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
+G SNVGK IL +SV+F+ ++ ++ ++N +
Sbjct: 1 MGKSNVGKSLILLSYINNGFLSMKYPQTTISVDFKQKTEQVNDKIIN------------L 48
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCI 158
LW E+F A ++VF+LND+ +L +K+W+ + +Q K I + +
Sbjct: 49 QLWDTAGLEQFRPIIQTYYKNAKAAILVFDLNDIQSLIDVKYWLRELRIQCGKDVIKILV 108
Query: 159 GNKVDLLPGHP 169
GNK DL P
Sbjct: 109 GNKCDLEYNEP 119
>gi|308803965|ref|XP_003079295.1| putative GTP-binding protein RAB1Y (ISS) [Ostreococcus tauri]
gi|116057750|emb|CAL53953.1| putative GTP-binding protein RAB1Y (ISS) [Ostreococcus tauri]
Length = 204
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSS------ELLVNGWTINT 93
S+D A + IL++G S VGK +I++R +S +FE+ S + L V+G +
Sbjct: 2 SSDEAPYDHLVKILLVGDSGVGKSSIVTRFVSDSFEELSPTVGVDFKLKRLDVDGKRLK- 60
Query: 94 KYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQ-- 150
+++W E F + +V V+++ ++ AL+ W+ +D+
Sbjct: 61 ------LTVWDTAGQERFRTLTSSYYRGAHGVVFVYDVTSAASFAALRETWLKEVDMYGT 114
Query: 151 -KFEILLCIGNKVD 163
+ + + IGNK+D
Sbjct: 115 IESSVKIVIGNKID 128
>gi|449458101|ref|XP_004146786.1| PREDICTED: ras-related protein RABC1-like isoform 1 [Cucumis
sativus]
gi|449458103|ref|XP_004146787.1| PREDICTED: ras-related protein RABC1-like isoform 2 [Cucumis
sativus]
gi|449529576|ref|XP_004171774.1| PREDICTED: ras-related protein RABC1-like isoform 1 [Cucumis
sativus]
gi|449529578|ref|XP_004171775.1| PREDICTED: ras-related protein RABC1-like isoform 2 [Cucumis
sativus]
Length = 213
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEE 110
+L+IG S VGK T+L R S +FED S + + + T+ K +++W E
Sbjct: 18 LLLIGDSGVGKSTLLLRFTSDSFEDLSPTIGVDFKIKHVTVGGK--KLKLAIWDTAGQER 75
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQKFE---ILLCIGNKVD 163
F + ++MV+++ T L W IDL I + +GNKVD
Sbjct: 76 FRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVD 132
>gi|390476751|ref|XP_003735179.1| PREDICTED: ras-related protein Rab-13-like [Callithrix jacchus]
Length = 203
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQANKLAR 141
>gi|356563372|ref|XP_003549938.1| PREDICTED: GTP-binding protein YPTM2-like isoform 2 [Glycine max]
Length = 215
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130
Query: 170 VHAEYRRRLL 179
V +E + +L
Sbjct: 131 VSSETAKVIL 140
>gi|296088976|emb|CBI38679.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK ILSR F S S+ + T+ K +W E +
Sbjct: 32 VVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTRTVTIKSKVIKAQIWDTAGQERY 91
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
++ S L A+ +V+++ T D + WV + +++ +GNK DL+
Sbjct: 92 RAVTSAYYRGALGAM-LVYDITKRQTFDHVARWVEELRAHADTSIVIMLVGNKADLVDQR 150
Query: 169 PVHAE 173
V +E
Sbjct: 151 AVPSE 155
>gi|60826641|gb|AAX36766.1| RAB13 member RAS oncogene family [synthetic construct]
gi|60826676|gb|AAX36767.1| RAB13 member RAS oncogene family [synthetic construct]
Length = 204
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|29841146|gb|AAP06159.1| similar to NM_078963 GTP-binding protein rab3A in Drosophila
melanogaster [Schistosoma japonicum]
gi|226480624|emb|CAX73409.1| Rab-protein 8 [Schistosoma japonicum]
Length = 216
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
Q D+TD+ + + +LIIG+S+VGK + L R +F A S+ + TI +
Sbjct: 3 QTRDATDQ-NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD 61
Query: 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-- 153
+ +W E + + ++++++ + + +A++ WV I ++
Sbjct: 62 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWVTQIKTYSWDNA 121
Query: 154 ILLCIGNKVDLLPGHPVHAEYRRRL 178
++ +GNK DL+ V + R L
Sbjct: 122 QVVLVGNKCDLVDDRVVSVDRGRHL 146
>gi|67484242|ref|XP_657341.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56474592|gb|EAL51955.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790156|dbj|BAD82874.1| small GTPase EhRabX26 [Entamoeba histolytica]
gi|449702814|gb|EMD43379.1| small GTPase EhRabX26, putative [Entamoeba histolytica KU27]
Length = 201
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
+ D + +L++G S+VGK +I R + FED SS + I
Sbjct: 2 NVDEKQKHRNIKVLLLGESSVGKTSITQRYVDNMFEDIYLSSVGVDFKFKEIKRDNELIR 61
Query: 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK-FEILLCI 158
+ +W E F + A +VF++N+ S+ ++ W I ++ +++++ +
Sbjct: 62 LQIWDTAGQERFQSIAKSYYRNADAAFIVFDINNESSFKKVQFWYNEISQEEAYQLVILV 121
Query: 159 GNKVDL 164
GNK DL
Sbjct: 122 GNKCDL 127
>gi|390335524|ref|XP_788644.2| PREDICTED: ras-related protein RabJ-like [Strongylocentrotus
purpuratus]
Length = 234
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G+ VGK +I+ R + F + + + +N + + LW E F
Sbjct: 8 VVILGNEGVGKTSIVVRYVGKIFSNQVSPTVGASFFTFKMNVDNHRVKLHLWDTAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCI-GNKVDLLPGH 168
+ + A +V+++ D T + +K W ++ Q + I++CI GNK DL
Sbjct: 68 KAMAPMYYRKANAAFIVYDITDSKTFENMKFWAEELE-QNIDGPIVMCILGNKSDLADHR 126
Query: 169 PVHAE 173
V +E
Sbjct: 127 QVSSE 131
>gi|449463200|ref|XP_004149322.1| PREDICTED: ras-related protein RABA5e-like [Cucumis sativus]
gi|449507589|ref|XP_004163075.1| PREDICTED: ras-related protein RABA5e-like [Cucumis sativus]
Length = 215
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +LSR F++ S ++ + + +W E F
Sbjct: 16 IVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEVKAQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDLLPGHP 169
+ ++V+++ +T D+ K W+ + + + + +GNK DL
Sbjct: 76 RAVTSAYYRGAVGALIVYDITRRTTFDSAKRWLDELGVHCDTATVRMLVGNKCDLENIRD 135
Query: 170 VHAEYRRRLLKRE 182
V E + L + E
Sbjct: 136 VSVEEGKNLAEEE 148
>gi|219126122|ref|XP_002183313.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405069|gb|EEC45013.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 203
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEQDQKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDAESFNNVKQWLHEIDRYAAENVNKLLVGNKSDLTAKRV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSTE 134
>gi|146181225|ref|XP_001022351.2| Ras family protein [Tetrahymena thermophila]
gi|146144246|gb|EAS02106.2| Ras family protein [Tetrahymena thermophila SB210]
gi|307777818|dbj|BAJ21305.1| Rab-family small GTPase Rab2F [Tetrahymena thermophila]
Length = 235
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IG + VGK +L R + F + D++ + I+ + +W E F
Sbjct: 10 FIMIGDTGVGKSCMLLRFVDDRFREDYDATIGVEFGSKIIDVANLAIKIQIWDTAGQESF 69
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
RS+ S A+ V+VF++ S+ D L W+ I Q E +L +GNK D
Sbjct: 70 --RSITRSYYKGAIGAVVVFDITKRSSFDNLPKWLHDIKEQGKEETFVLIVGNKFD---- 123
Query: 168 HPVHAEYRRRLLKREESSADP-DFC-QSGISETEGSSLLGD 206
++L+RE S + +F Q G + E S+ GD
Sbjct: 124 ---------QMLQREVSQQEASEFAEQQGFNYVEVSAKSGD 155
>gi|110761970|ref|XP_001122072.1| PREDICTED: ras-related protein RabJ-like [Apis mellifera]
Length = 221
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++ +GS VGK +I+ R + S +E L TI ++T +++
Sbjct: 8 VVALGSQGVGKTSIIMRYIG-------KSCNEHL--NPTIGASFFTCKLNVENARIMLRV 58
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGN 160
W E F + A ++VF+L +T A+K WV + ++++ L+ IGN
Sbjct: 59 WDTAGQERFKSMAPMYYRNANAAMLVFDLTQYNTFAAMKRWVTELRRNVEEVMTLVVIGN 118
Query: 161 KVDLLPGHPVHAEYRR 176
K DL V AE R
Sbjct: 119 KSDLTKERQVDAEEGR 134
>gi|410222046|gb|JAA08242.1| RAB13, member RAS oncogene family [Pan troglodytes]
Length = 203
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|195042590|ref|XP_001991462.1| GH12045 [Drosophila grimshawi]
gi|193901220|gb|EDW00087.1| GH12045 [Drosophila grimshawi]
Length = 197
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 32/144 (22%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASD-------SSSELLVNGWTINTKYYTADVSLWM 104
+LIIG S VGK +++ R + F+D D S+ + V+G T+Y V+LW
Sbjct: 8 LLIIGESGVGKSSLIRRFVENKFDDNHDVTIGMDFKSAVMCVDG----TEY---KVALWD 60
Query: 105 AHLHEEFSIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIG 159
E F RSL S AL ++V+++ +L L+ W+ +D ++ +G
Sbjct: 61 TAGAERF--RSLTPSFYRKALGAILVYDITCRESLVKLEAWLAEVDSYSDNPNIAIIVVG 118
Query: 160 NKVDLLPGHPVHAEYRRRLLKREE 183
NK+D R R++ REE
Sbjct: 119 NKID-----------RERVVDREE 131
>gi|123372941|ref|XP_001297558.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121877765|gb|EAX84628.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 187
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI 113
+IG + VGK ++ RL++ F+ DS+ + + + ++ + +W E++
Sbjct: 1 MIGDAGVGKTALVRRLITDEFDGVLDSTIGVEYSLYKLSIGNQKIQLQIWDTAGQEQYRA 60
Query: 114 RSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF----EILLCIGNKVDL 164
S +++VF+ N+ + + L+ W+ +D++ + +L +GNK+DL
Sbjct: 61 LSQAYYRDAVGVLIVFSYNNHHSFEGLEDWI--VDVRNYCHPKAKILLVGNKIDL 113
>gi|145494628|ref|XP_001433308.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834364|emb|CAI44525.1| rab_B48 [Paramecium tetraurelia]
gi|124400425|emb|CAK65911.1| unnamed protein product [Paramecium tetraurelia]
Length = 205
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--WMAHLHE 109
++I+G+ NVGK IL R F S + + V+ T K DV L W E
Sbjct: 14 VVIVGNCNVGKSCILMRYSENYF--TSQYYNTIGVDFKTRVIKIGNQDVKLQIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL--QKFEILLCIGNKVDLLPG 167
F + +V+V+++ + ST DA+ W+ ID +K L +GNK D +P
Sbjct: 72 RFKALTNNYYRDAHGVVIVYDVTERSTFDAVDSWIEDIDKFGRKTVQKLIVGNKAD-IPN 130
Query: 168 HPVHAEYRRRLLKREESSADPDF 190
+R++ K+E F
Sbjct: 131 -------KRKISKQEGQEKAKQF 146
>gi|118375516|ref|XP_001020942.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila]
gi|89302709|gb|EAS00697.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila SB210]
gi|307777796|dbj|BAJ21294.1| Rab-family small GTPase Rab5B [Tetrahymena thermophila]
Length = 197
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G + VGK +IL+R + F++ S ++ + + T K Y +W E
Sbjct: 9 VVILGDAGVGKTSILNRFSNKGFDENSQTTLGASFIPKVLTRGDKTYK--FQIWDTAGQE 66
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL 165
++ S+ L D AL+ V+++ + ++ D LK WV + + +GNKVDL+
Sbjct: 67 KYRSLAPLYYRDTHAALI-VYDITNRASFDVLKKWVQELREHGPANITIAVVGNKVDLI 124
>gi|6324663|ref|NP_014732.1| Vps21p [Saccharomyces cerevisiae S288c]
gi|549795|sp|P36017.1|VPS21_YEAST RecName: Full=Vacuolar protein sorting-associated protein 21;
AltName: Full=GTP-binding protein YPT51; AltName:
Full=Vacuolar protein-targeting protein 12
gi|441477|emb|CAA82543.1| VPS21 product [Saccharomyces cerevisiae]
gi|483567|emb|CAA53769.1| ypt51p [Saccharomyces cerevisiae]
gi|1164935|emb|CAA64010.1| YOR3154c [Saccharomyces cerevisiae]
gi|1420257|emb|CAA99285.1| VPS21 [Saccharomyces cerevisiae]
gi|151945713|gb|EDN63954.1| small GTP-binding protein [Saccharomyces cerevisiae YJM789]
gi|190407421|gb|EDV10688.1| vacuolar protein sorting-associated protein 21 [Saccharomyces
cerevisiae RM11-1a]
gi|207341191|gb|EDZ69312.1| YOR089Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272985|gb|EEU07949.1| Vps21p [Saccharomyces cerevisiae JAY291]
gi|259149571|emb|CAY86375.1| Vps21p [Saccharomyces cerevisiae EC1118]
gi|285814973|tpg|DAA10866.1| TPA: Vps21p [Saccharomyces cerevisiae S288c]
gi|323302866|gb|EGA56670.1| Vps21p [Saccharomyces cerevisiae FostersB]
gi|323307162|gb|EGA60445.1| Vps21p [Saccharomyces cerevisiae FostersO]
gi|323331470|gb|EGA72885.1| Vps21p [Saccharomyces cerevisiae AWRI796]
gi|323335502|gb|EGA76787.1| Vps21p [Saccharomyces cerevisiae Vin13]
gi|323346523|gb|EGA80810.1| Vps21p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352075|gb|EGA84612.1| Vps21p [Saccharomyces cerevisiae VL3]
gi|349581251|dbj|GAA26409.1| K7_Vps21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763044|gb|EHN04575.1| Vps21p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296418|gb|EIW07520.1| Vps21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 210
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +I+ R +S +F + + + + L TIN +T +W E
Sbjct: 10 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--HTVKFEIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ + +HWV + Q + I+ +GNK+D+L
Sbjct: 68 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ- 126
Query: 168 HPVHAEYRRRLLKREE 183
E R + REE
Sbjct: 127 -----EGGERKVAREE 137
>gi|4506363|ref|NP_002861.1| ras-related protein Rab-13 isoform 1 [Homo sapiens]
gi|386782037|ref|NP_001248220.1| ras-related protein Rab-13 [Macaca mulatta]
gi|297663399|ref|XP_002810164.1| PREDICTED: ras-related protein Rab-13 [Pongo abelii]
gi|332220479|ref|XP_003259383.1| PREDICTED: ras-related protein Rab-13 [Nomascus leucogenys]
gi|332810355|ref|XP_522433.3| PREDICTED: ras-related protein Rab-13 [Pan troglodytes]
gi|397492531|ref|XP_003817175.1| PREDICTED: ras-related protein Rab-13 [Pan paniscus]
gi|402856334|ref|XP_003892746.1| PREDICTED: ras-related protein Rab-13 [Papio anubis]
gi|426331749|ref|XP_004026857.1| PREDICTED: ras-related protein Rab-13 [Gorilla gorilla gorilla]
gi|1710016|sp|P51153.1|RAB13_HUMAN RecName: Full=Ras-related protein Rab-13; AltName: Full=Cell
growth-inhibiting gene 4 protein; Flags: Precursor
gi|20379072|gb|AAM21096.1|AF498948_1 small GTP binding protein RAB13 [Homo sapiens]
gi|452320|emb|CAA53266.1| rab 13 [Homo sapiens]
gi|12654003|gb|AAH00799.1| RAB13, member RAS oncogene family [Homo sapiens]
gi|41350395|gb|AAS00485.1| growth-inhibiting gene 4 protein [Homo sapiens]
gi|54696268|gb|AAV38506.1| RAB13, member RAS oncogene family [Homo sapiens]
gi|54696270|gb|AAV38507.1| RAB13, member RAS oncogene family [Homo sapiens]
gi|61356004|gb|AAX41198.1| RAB13 member RAS oncogene family [synthetic construct]
gi|61356015|gb|AAX41199.1| RAB13 member RAS oncogene family [synthetic construct]
gi|68085671|gb|AAH73168.2| RAB13, member RAS oncogene family [Homo sapiens]
gi|117645128|emb|CAL38030.1| hypothetical protein [synthetic construct]
gi|117645354|emb|CAL38143.1| hypothetical protein [synthetic construct]
gi|117645750|emb|CAL38342.1| hypothetical protein [synthetic construct]
gi|117646294|emb|CAL38614.1| hypothetical protein [synthetic construct]
gi|117646436|emb|CAL38685.1| hypothetical protein [synthetic construct]
gi|117646828|emb|CAL37529.1| hypothetical protein [synthetic construct]
gi|119573633|gb|EAW53248.1| hCG1996054, isoform CRA_e [Homo sapiens]
gi|119573634|gb|EAW53249.1| hCG1996054, isoform CRA_e [Homo sapiens]
gi|119573635|gb|EAW53250.1| hCG1996054, isoform CRA_e [Homo sapiens]
gi|158256592|dbj|BAF84269.1| unnamed protein product [Homo sapiens]
gi|208967230|dbj|BAG73629.1| RAB13, member RAS oncogene family [synthetic construct]
gi|355558499|gb|EHH15279.1| hypothetical protein EGK_01346 [Macaca mulatta]
gi|380785379|gb|AFE64565.1| ras-related protein Rab-13 [Macaca mulatta]
gi|384942334|gb|AFI34772.1| ras-related protein Rab-13 [Macaca mulatta]
gi|740475|prf||2005309B rab13 GTPase
Length = 203
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|123417386|ref|XP_001305092.1| GTP-binding protein YPTM2 [Trichomonas vaginalis G3]
gi|62869549|gb|AAX97495.1| small Rab GTPase Rab1a [Trichomonas vaginalis]
gi|72537672|gb|AAZ73762.1| small Rab GTPase [Trichomonas vaginalis]
gi|72537674|gb|AAZ73763.1| small Rab GTPase [Trichomonas vaginalis]
gi|121886589|gb|EAX92162.1| GTP-binding protein YPTM2, putative [Trichomonas vaginalis G3]
Length = 202
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG+S VGK +L R F D S+ + I + + +W E F
Sbjct: 12 VLIIGNSGVGKSCLLLRFAEDMFSDNYISTIGVDFKIRKIELDGKSIKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +V+V+++ + + + ++HW+ ID + + L +GNK D LP
Sbjct: 72 RTITKSYYRGSNGIVVVYDITNRDSFEQVQHWMSEIDNHASQDVCRLLVGNKAD-LPDRA 130
Query: 170 VHAEYRRRLLKR 181
V E L ++
Sbjct: 131 VKTEEGEALARQ 142
>gi|291231118|ref|XP_002735512.1| PREDICTED: low-Mr GTP-binding protein Rab31, putative-like
[Saccoglossus kowalevskii]
Length = 154
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++GS VGK +++ R +S +F + +N + + LW E F
Sbjct: 8 VVVLGSQGVGKTSVVLRYVSKHFSQKVTPTIGASFFTIKLNIDEHRVKLQLWDTAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCI-GNKVDLLPGHP 169
+ + A ++V+++ T +A+K WV + E I+LC+ GNK DL
Sbjct: 68 RSMAPMYYRKANAALLVYDITVPDTFNAIKSWVDELQRNVDEGIILCVLGNKCDLTEHRQ 127
Query: 170 VHAE 173
V E
Sbjct: 128 VSKE 131
>gi|68485957|ref|XP_713097.1| likely rab family GTP-binding protein [Candida albicans SC5314]
gi|46434574|gb|EAK93979.1| likely rab family GTP-binding protein [Candida albicans SC5314]
Length = 224
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD--------SSSELLVNGWTI 91
S+D+++L K+ I+ +G +VGK ++++R + F++ S + L G TI
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSLITRFMYDTFDETYAATIGIDFLSKTMYLEEGKTI 61
Query: 92 NTKYYTADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
+ LW E F RSL I D A V+ +++ + + D L W+ +
Sbjct: 62 R-------LQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFDNLDKWIKDVK 111
Query: 149 LQKFE--ILLCIGNKVDL 164
L++ + I++ +GNK DL
Sbjct: 112 LERGDDVIIVLVGNKSDL 129
>gi|74834256|emb|CAI44497.1| rab_C43 [Paramecium tetraurelia]
Length = 195
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--WMA 105
K I +G+S VGK +I+ R F++ + S+ L + +Y + L W
Sbjct: 3 KEIKITFLGNSGVGKSSIVKRYCFEEFDEHNQSN--LGADYVPKEMEYQNNKIKLQIWDT 60
Query: 106 HLHEEFSIRSL-PISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKV 162
E+F RSL P+ L +++V+++ S+ LK WV S++ K ++ +GNK
Sbjct: 61 AGQEKF--RSLVPLF--LRTVIIVYDITQKSSFTQLKEWVSSLEQICSKNQLFFLVGNKC 116
Query: 163 DLLPGHPV 170
DL+ V
Sbjct: 117 DLIEQEQV 124
>gi|359806412|ref|NP_001240985.1| ras-related protein RABA5b-like [Glycine max]
gi|345651732|gb|AEO14876.1| rfls8 protein [Glycine max]
Length = 213
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +LSR F+ S ++ + + +W E F
Sbjct: 15 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQLVEIDGKEIKAQIWDTAGQERF 74
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGH 168
++ S + ALV V++++ T D++K W+ + Q + + +GNK DL
Sbjct: 75 RAVTSAYYRGAVGALV-VYDISRRGTFDSIKRWLQELTTQNDSTVARMLVGNKCDLENIR 133
Query: 169 PVHAEYRRRLLKRE 182
V E + L + E
Sbjct: 134 EVSTEEGKSLAEEE 147
>gi|330797350|ref|XP_003286724.1| Rab GTPase [Dictyostelium purpureum]
gi|325083322|gb|EGC36778.1| Rab GTPase [Dictyostelium purpureum]
Length = 205
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R ++ D S+ + T+N T + +W E F
Sbjct: 13 ILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL+
Sbjct: 73 RTITSSYYRGAQGIILVYDCTDQDSFNNVKQWMGEIERYACENVNKLLVGNKTDLV 128
>gi|119573630|gb|EAW53245.1| hCG1996054, isoform CRA_d [Homo sapiens]
gi|119573631|gb|EAW53246.1| hCG1996054, isoform CRA_d [Homo sapiens]
gi|119573632|gb|EAW53247.1| hCG1996054, isoform CRA_d [Homo sapiens]
Length = 166
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGH 168
+ +++V+++ D + + +++W+ SI E LL +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLL-LGNKCDMEAKR 129
Query: 169 PVHAEYRRRLLKR 181
V E ++ R
Sbjct: 130 KVQKEQADKVRAR 142
>gi|4586580|dbj|BAA76422.1| rab-type small GTP-binding protein [Cicer arietinum]
Length = 202
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAANKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|123457480|ref|XP_001316467.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121899174|gb|EAY04244.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 198
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG + VGK +I +R ++ +F ++ + + Y+ D+++W E +
Sbjct: 8 VVLIGDTLVGKTSIATRYVNGDFNESYKGTVAANFLHKLVEINDYSCDLAIWDTAGQEIY 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ ++VF++ ++T +K W+ + ++Q I++ +GNK DL
Sbjct: 68 RTLTPNYYRDANIAIIVFDITSMNTFKQVKSWINEVKTNVQDI-IIMVVGNKHDLEANRA 126
Query: 170 VHAEYRRRLLKREESSADPDFCQS-GISETEGSSLLG 205
V + L CQS G+ E S+L G
Sbjct: 127 VSMDEANEL------------CQSFGVEYVETSALTG 151
>gi|68486004|ref|XP_713074.1| likely rab family GTP-binding protein [Candida albicans SC5314]
gi|46434549|gb|EAK93955.1| likely rab family GTP-binding protein [Candida albicans SC5314]
Length = 219
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD--------SSSELLVNGWTI 91
S+D+++L K+ I+ +G +VGK ++++R + F++ S + L G TI
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSLITRFMYDTFDETYAATIGIDFLSKTMYLEEGKTI 61
Query: 92 NTKYYTADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
+ LW E F RSL I D A V+ +++ + + D L W+ +
Sbjct: 62 R-------LQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFDNLDKWIKDVK 111
Query: 149 LQKFE--ILLCIGNKVDL 164
L++ + I++ +GNK DL
Sbjct: 112 LERGDDVIIVLVGNKSDL 129
>gi|443693080|gb|ELT94523.1| hypothetical protein CAPTEDRAFT_177262 [Capitella teleta]
Length = 206
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + TI T + +W E F
Sbjct: 15 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTIELDRKTIKLQIWDTAGQERF 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 75 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASESVNKLLVGNKCDL 129
>gi|440635533|gb|ELR05452.1| rab family, other [Geomyces destructans 20631-21]
Length = 219
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 21 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDEATTVKFEIWDTAGQER 80
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL 165
+ + V+V+++ S+LD K WV + Q E I+ GNK+DL+
Sbjct: 81 YKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIIIALAGNKLDLV 137
>gi|356563370|ref|XP_003549937.1| PREDICTED: GTP-binding protein YPTM2-like isoform 1 [Glycine max]
Length = 202
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|119590297|gb|EAW69891.1| RAB4A, member RAS oncogene family, isoform CRA_c [Homo sapiens]
Length = 176
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|61365868|gb|AAX42776.1| RAB13 member RAS oncogene family [synthetic construct]
Length = 204
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|123444682|ref|XP_001311109.1| Ras-like GTP-binding protein YPT1 [Trichomonas vaginalis G3]
gi|62736240|gb|AAX97449.1| small Rab GTPase Rab1b [Trichomonas vaginalis]
gi|121892906|gb|EAX98179.1| Ras-like GTP-binding protein YPT1, putative [Trichomonas vaginalis
G3]
Length = 203
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S GK +L R F D S+ + TIN T + +W E F
Sbjct: 12 VLLIGDSGTGKSCLLIRFAENIFSDNYISTIGVDFKIKTINVDGKTIKMQVWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID-LQKFEIL-LCIGNKVDLLPGHP 169
+ +++V+++ + + D + +W+ ID L ++ L +GNK DL
Sbjct: 72 RTITASYYRGSNGIILVYDVTNRDSFDHINYWMKEIDRLAAPDVCRLIVGNKSDLSDKRV 131
Query: 170 VHAEYRRRLLKR 181
V E + L ++
Sbjct: 132 VTTEEGQSLAQQ 143
>gi|54696266|gb|AAV38505.1| RAB13, member RAS oncogene family [synthetic construct]
gi|61365863|gb|AAX42775.1| RAB13 member RAS oncogene family [synthetic construct]
Length = 204
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|402587142|gb|EJW81078.1| member Ras oncogene family RAB18A [Wuchereria bancrofti]
Length = 200
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK +++ R + F+ ++ + T+ +++W E F
Sbjct: 13 ILIIGESGVGKSSLMLRFVDDTFDPEIAATIGVDFRVTTMMVDQNRVKLAIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDL 164
+ ++ V+++++ T + L HW+ +D + + + IGNK+D+
Sbjct: 73 RTLTPSYYRGAQGVICVYDVSNRQTFERLSHWMNEVDTYSTKTDAVKMLIGNKIDI 128
>gi|15236555|ref|NP_193486.1| RAB GTPase homolog 1C [Arabidopsis thaliana]
gi|297800342|ref|XP_002868055.1| hypothetical protein ARALYDRAFT_914960 [Arabidopsis lyrata subsp.
lyrata]
gi|75204021|sp|Q9SEH3.1|RAD2C_ARATH RecName: Full=Ras-related protein RABD2c; Short=AtRABD2c; AltName:
Full=Ras-related protein Rab1C; Short=AtRab1C
gi|6651023|gb|AAF22133.1|AF127134_1 ras-related small GTP-binding protein [Arabidopsis thaliana]
gi|7268505|emb|CAB78756.1| ras-related small GTP-binding protein RAB1c [Arabidopsis thaliana]
gi|15529161|gb|AAK97675.1| AT4g17530/dl4800c [Arabidopsis thaliana]
gi|110742819|dbj|BAE99310.1| ras-related small GTP-binding protein RAB1c [Arabidopsis thaliana]
gi|297313891|gb|EFH44314.1| hypothetical protein ARALYDRAFT_914960 [Arabidopsis lyrata subsp.
lyrata]
gi|332658507|gb|AEE83907.1| RAB GTPase homolog 1C [Arabidopsis thaliana]
Length = 202
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++ +++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSTE 134
>gi|344286688|ref|XP_003415089.1| PREDICTED: ras-related protein Rab-4A-like [Loxodonta africana]
Length = 249
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 47 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 106
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q ++LC GNK DL
Sbjct: 107 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVVILC-GNKKDL 161
>gi|327262200|ref|XP_003215913.1| PREDICTED: ras-related protein Rab-4A-like [Anolis carolinensis]
Length = 271
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 69 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 128
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 129 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 183
>gi|194763925|ref|XP_001964082.1| GF20909 [Drosophila ananassae]
gi|190619007|gb|EDV34531.1| GF20909 [Drosophila ananassae]
Length = 198
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +++ R + F++ D + + +N V+LW E F
Sbjct: 8 LLVIGESGVGKSSLIRRFVENKFDENHDVTIGMDFKSKVMNVDGIDYKVALWDTAGAERF 67
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLP 166
RSL S AL ++V+++ + +L L+ W+ +D ++ +GNK+D
Sbjct: 68 --RSLTPSFYRKALGAILVYDITNRDSLVKLEAWLAELDSYSDNPNIAIIVVGNKID--- 122
Query: 167 GHPVHAEYRRRLLKREES 184
+ R++ REE
Sbjct: 123 --------QERVVDREEG 132
>gi|126340875|ref|XP_001375267.1| PREDICTED: ras-related protein Rab-19-like [Monodelphis domestica]
Length = 217
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ S + D ++ + +V ++ K + +W E
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGIYTDTQQNTIGVDFMVRSLEVDGK--KVKMQVWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F + A ++ ++L ST +++ HW+ I+ +++ IGNK DL
Sbjct: 78 RFRTITQSYYRSANAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKADL 134
>gi|29789271|ref|NP_112354.1| ras-related protein Rab-13 [Rattus norvegicus]
gi|46577668|sp|P35286.2|RAB13_RAT RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|21952483|gb|AAM82588.1|AF525280_1 GTP-binding protein RAB13 [Rattus norvegicus]
gi|149048004|gb|EDM00580.1| RAB13, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
Length = 203
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + T+ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E RL +
Sbjct: 131 VQREQAERLAR 141
>gi|449298295|gb|EMC94310.1| hypothetical protein BAUCODRAFT_544119 [Baudoinia compniacensis
UAMH 10762]
Length = 227
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +++ R + F+D +S+ + L ++ + T +W E
Sbjct: 21 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDDQ-TTVKFEIWDTAGQE 79
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
+ + V+V+++ ++LD K WV + Q E I+ GNK+DL
Sbjct: 80 RYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIIIALAGNKLDLAES 139
Query: 168 HP 169
P
Sbjct: 140 DP 141
>gi|118348924|ref|XP_001007935.1| Ras family protein [Tetrahymena thermophila]
gi|89289702|gb|EAR87690.1| Ras family protein [Tetrahymena thermophila SB210]
gi|307777792|dbj|BAJ21292.1| Rab-family small GTPase Rab21B [Tetrahymena thermophila]
Length = 207
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY----------TADVS 101
I+IIG VGK ++ R + D +S TIN Y +++
Sbjct: 9 IVIIGEGRVGKTSLTLRYCKGEYSDTQES---------TINVSYLEKTVQVNETDKVNIA 59
Query: 102 LWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCI- 158
+W E+F + Q ++V+++ + D +K WV + L +I++CI
Sbjct: 60 IWDTAGQEKFKSITPMYYQQAVCAIIVYDITYKESFDKVKSWVTELTQILDTNKIVICIA 119
Query: 159 GNKVDLLPGHPVHAEY 174
GNK DL + ++
Sbjct: 120 GNKCDLENNRQIDKQF 135
>gi|145504759|ref|XP_001438346.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834286|emb|CAI44505.1| rab_A69 [Paramecium tetraurelia]
gi|124405518|emb|CAK70949.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+I+G +NVGK +L + F + D++ E IN K + +W E
Sbjct: 10 FIIVGDTNVGKSCLLLQFTDSRFRNEHDATIGVEFGSRNLKINDK--QIKLQIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLP 166
F + ++VF++ + + L+ W I K E+++ +GNK+DL
Sbjct: 68 SFKSITRSYYRGSIGGILVFDVTSRQSFEDLQKWYQEIQGYACDKIEMVI-VGNKIDLED 126
Query: 167 GHPVHAEYRRRLLKRE-----ESSADPDFCQSGISETEGSSLL-----GDEEPSWEI 213
V E R+ +++ E+SA + ET + +L G+ +P+ E+
Sbjct: 127 RREVQTEEARKYAQKQGFAYFETSAKTGENVDNVFETMANQVLKKIDSGEIDPTQEV 183
>gi|238880071|gb|EEQ43709.1| GTP-binding protein ryh1 [Candida albicans WO-1]
Length = 218
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD--------SSSELLVNGWTI 91
S+D+++L K+ I+ +G +VGK ++++R + F++ S + L G TI
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSLITRFMYDTFDETYAATIGIDFLSKTMYLEEGKTI 61
Query: 92 NTKYYTADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
+ LW E F RSL I D A V+ +++ + + D L W+ +
Sbjct: 62 R-------LQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFDNLDKWIKDVK 111
Query: 149 LQKFE--ILLCIGNKVDL 164
L++ + I++ +GNK DL
Sbjct: 112 LERGDDVIIVLVGNKSDL 129
>gi|345560497|gb|EGX43622.1| hypothetical protein AOL_s00215g358 [Arthrobotrys oligospora ATCC
24927]
Length = 216
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI----NTKYYTADVSLWMAHL 107
++++G S VGK +++ R + F+D +S+ TI NT T +W
Sbjct: 18 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTIALDENT---TVKFEIWDTAG 74
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL 165
E + + V+V+++ ++LD K WV + Q E ++ GNK+DL
Sbjct: 75 QERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANESIVIALAGNKLDLA 134
Query: 166 PGHP 169
+P
Sbjct: 135 TANP 138
>gi|341891892|gb|EGT47827.1| hypothetical protein CAEBREN_03430 [Caenorhabditis brenneri]
Length = 202
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILIIG S VGK +++ R + F E A+ + V I+ +++W E
Sbjct: 14 ILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMVIDGNR--VKLAIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLP 166
F + ++ V+++ S+ + L HW+ +D + I + + NK+D +P
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMTEVDTYCTNENIIKMMVANKID-MP 130
Query: 167 GHPVHAEYRRRLLKREES 184
V E + KR +
Sbjct: 131 NRVVSREEGLKFAKRHRT 148
>gi|3024519|sp|P56371.1|RAB4A_MOUSE RecName: Full=Ras-related protein Rab-4A
gi|2706878|dbj|BAA24034.1| rab 4 [Mus musculus]
Length = 213
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q ++LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILC-GNKKDL 125
>gi|118348502|ref|XP_001007726.1| Ras family protein [Tetrahymena thermophila]
gi|89289493|gb|EAR87481.1| Ras family protein [Tetrahymena thermophila SB210]
gi|307777834|dbj|BAJ21313.1| Rab-family small GTPase RabX5 [Tetrahymena thermophila]
Length = 229
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS-------SELLVNGWTINTKYYTADVSLWM 104
+L+IG + VGK +IL+R +F+++ + +L V G I + +W
Sbjct: 14 VLVIGEAKVGKTSILTRYTEGSFQESMIPTLGIDYRFKKLFVKGQEIK-------LQIWD 66
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGN 160
E F + +++VF+L D T L +W+ +I + ILL GN
Sbjct: 67 TAGQERFRAITQNFYKGAMGIILVFDLTDPKTFKTLSNWIENIKQYSGSEACRILL--GN 124
Query: 161 KVDL----LPGHPVHAEYRRRLLKREESSADPD 189
K D+ +P + + ++ E+SA +
Sbjct: 125 KCDISQNQIPKQDIQNLANQNKIQYFETSAKSN 157
>gi|60602332|gb|AAX27623.1| unknown [Schistosoma japonicum]
Length = 170
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
Q D+TD+ + + +LIIG+S+VGK + L R +F A S+ + TI +
Sbjct: 3 QTRDATDQ-NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD 61
Query: 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-- 153
+ +W E + + ++++++ + + +A++ WV I ++
Sbjct: 62 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWVTQIKTYSWDNA 121
Query: 154 ILLCIGNKVDLLPGHPVHAEYRRRL 178
++ +GNK DL+ V + R L
Sbjct: 122 QVVLVGNKCDLVDDRVVSVDRGRHL 146
>gi|393222433|gb|EJD07917.1| small GTPase [Fomitiporia mediterranea MF3/22]
Length = 233
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 50 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRTTITFSIWDLGGQREF 107
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 108 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKYDTFATFP 166
>gi|405971528|gb|EKC36363.1| Ras-related protein Rab-33B [Crassostrea gigas]
Length = 242
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R + F D ++++ + T++ + LW E F
Sbjct: 31 IIVIGDSNVGKTCLTYRFCTGKFPDKTEATIGVDFRERTVDVDGEQIKLQLWDTAGQERF 90
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI---LLCIGNKVDL 164
+ + A+V V+++ +S+ + + W+ D + + +GNK D+
Sbjct: 91 RKSMVQHYYRNVHAVVFVYDVTKMSSFENMPGWIEECDRHNLNLEIPRILVGNKCDM 147
>gi|334322160|ref|XP_001379061.2| PREDICTED: ras-related protein Rab-4A-like [Monodelphis domestica]
Length = 233
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 31 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 90
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 91 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 145
>gi|440902734|gb|ELR53487.1| Ras-related protein Rab-19 [Bos grunniens mutus]
Length = 217
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ S + +A ++ + V I+ K + +W E
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGK--KVKMQVWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F + A ++ ++L ST +++ HW+ I+ +++ IGNK DL
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDL 134
>gi|226289136|gb|EEH44648.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 291
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 41 TDRASLEKRPG----ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTK 94
TD + +P ++++G + VGK +++ R ++ +F++ + + + L ++ T+
Sbjct: 2 TDAGAAGPKPSSSVKLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR 61
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E F+ + A ++V++L S+L KHWV + Q
Sbjct: 62 --TIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPG 119
Query: 154 -ILLCIGNKVDL 164
++ +GNK+DL
Sbjct: 120 IVISLVGNKLDL 131
>gi|225681970|gb|EEH20254.1| GTPase [Paracoccidioides brasiliensis Pb03]
Length = 290
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 41 TDRASLEKRPG----ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTK 94
TD + +P ++++G + VGK +++ R ++ +F++ + + + L ++ T+
Sbjct: 2 TDAGAAGPKPSSSVKLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR 61
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E F+ + A ++V++L S+L KHWV + Q
Sbjct: 62 --TIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPG 119
Query: 154 -ILLCIGNKVDL 164
++ +GNK+DL
Sbjct: 120 IVISLVGNKLDL 131
>gi|338725027|ref|XP_003365067.1| PREDICTED: ras-related protein Rab-13-like [Equus caballus]
Length = 203
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|241068895|ref|XP_002408522.1| RAB-18, putative [Ixodes scapularis]
gi|215492508|gb|EEC02149.1| RAB-18, putative [Ixodes scapularis]
Length = 201
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG SNVGK ++L R F+ + ++ + T+ A +++W E F
Sbjct: 12 ILIIGESNVGKSSLLLRFTDDVFDPSLAATIGVDFKVKTVTVDGNKAKLAIWDTAGSERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLPGH 168
+ ++V+++++ +T L HW+ ++ + + + +GNK+D
Sbjct: 72 RTLTPSYYRGAQGAILVYDVSNHNTFLKLDHWLAELETYCTRSNVVKMLVGNKIDRHESR 131
Query: 169 PVHAE----YRRR--LLKREESSADPDFCQSGISE 197
V E Y R+ +L E S+ D Q E
Sbjct: 132 VVSKEQGMNYARKHSMLFIEASAKTKDGVQCAFEE 166
>gi|295660766|ref|XP_002790939.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281191|gb|EEH36757.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 293
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 41 TDRASLEKRPG----ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTK 94
TD + +P ++++G + VGK +++ R ++ +F++ + + + L ++ T+
Sbjct: 2 TDAGAAGPKPSSSVKLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR 61
Query: 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
T +W E F+ + A ++V++L S+L KHWV + Q
Sbjct: 62 --TIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPG 119
Query: 154 -ILLCIGNKVDL 164
++ +GNK+DL
Sbjct: 120 IVISLVGNKLDL 131
>gi|123407029|ref|XP_001302917.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736262|gb|AAX97460.1| small Rab GTPase RabA4 [Trichomonas vaginalis]
gi|121884251|gb|EAX89987.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 7/149 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+I+G+S VGK IL RL+ +F + S S+ + + + + +W E F
Sbjct: 9 FIIVGASGVGKTAILKRLVEDSFTEESQSTIGVEFDSTMLTIDGRKVKLQIWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPGHP 169
S +++VF+L + T + L W+ + ++ IGNK DL
Sbjct: 69 RSISKAYYRNAVGVILVFDLTERKTFEDLSSWLYDVHTLCDPNCVIQLIGNKSDLADNRV 128
Query: 170 VH-----AEYRRRLLKREESSADPDFCQS 193
+ A +R + E+SA C S
Sbjct: 129 ISLAEADAFAQRNHMHYLEASAKSGSCIS 157
>gi|154339774|ref|XP_001565844.1| putative small GTP-binding protein Rab1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063162|emb|CAM45362.1| putative small GTP-binding protein Rab1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 200
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+N + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLDSKVIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ D+ + + +K W+ ID E + + +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIDKYASENVNKILVGNKCDLVTKKA 130
Query: 170 VHAEYRR 176
V + +
Sbjct: 131 VDTQMAK 137
>gi|50082731|gb|AAT70060.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+ RL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGAGKTSIIYRLVGSNFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 LIDLKSVKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DLL + E
Sbjct: 114 IPEGCVKILC--GNKLDLLNERAITTE 138
>gi|348500494|ref|XP_003437808.1| PREDICTED: ras-related protein Rab-3A-like [Oreochromis niloticus]
Length = 219
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN 92
+G++E STD+ + + ILIIG+S+VGK + L R +F A S+ + TI
Sbjct: 8 YGQKE--STDQ-NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY 64
Query: 93 TKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ +W E + + ++++++ + + +A++ W I +
Sbjct: 65 RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 124
Query: 153 E--ILLCIGNKVDLLPGHPVHAEYRRRL 178
+ +L +GNK D+ V AE R+L
Sbjct: 125 DNAQVLLVGNKCDMEDERVVAAERGRQL 152
>gi|340897464|gb|EGS17054.1| hypothetical protein CTHT_0073810 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 219
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +I+ R + F+ +S+ TI+ + T +W E
Sbjct: 20 LVLLGESAVGKSSIVLRFVKDQFDSYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ ++LD K WV + Q E I+ GNK+DL+ +
Sbjct: 80 YKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIIIALAGNKLDLVADN 139
Query: 169 P 169
P
Sbjct: 140 P 140
>gi|308510398|ref|XP_003117382.1| CRE-RAB-21 protein [Caenorhabditis remanei]
gi|308242296|gb|EFO86248.1| CRE-RAB-21 protein [Caenorhabditis remanei]
Length = 210
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G VGK +++ R + F S+ + T++ A++ +W E++
Sbjct: 15 VVLLGEGCVGKSSLVLRFVENKFSSRHLSTIQASFQSKTVHIDDCKAELHIWDTAGQEKY 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL 164
+++VF++ D + + +K+WV I L K +L +GNK+DL
Sbjct: 75 HALGPIYYRGSNGVLLVFDITDRRSFEKVKNWVLEIKTCLGKTAEILIVGNKIDL 129
>gi|255721801|ref|XP_002545835.1| GTP-binding protein ryh1 [Candida tropicalis MYA-3404]
gi|240136324|gb|EER35877.1| GTP-binding protein ryh1 [Candida tropicalis MYA-3404]
Length = 215
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD--------SSSELLVNGWTI 91
S+D+++L K+ I+ +G +VGK ++++R + F++ S + L G TI
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSLITRFMYDTFDETYAATIGIDFLSKTMYLEEGKTI 61
Query: 92 NTKYYTADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
+ LW E F RSL I D A V+ +++ + + D L W+ +
Sbjct: 62 R-------LQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFDNLDKWIKDVK 111
Query: 149 LQKFE--ILLCIGNKVDL 164
L++ + I++ +GNK DL
Sbjct: 112 LERGDDVIIVLVGNKSDL 129
>gi|90085076|dbj|BAE91279.1| unnamed protein product [Macaca fascicularis]
Length = 187
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|448535070|ref|XP_003870898.1| Ypt52 protein [Candida orthopsilosis Co 90-125]
gi|380355254|emb|CCG24771.1| Ypt52 protein [Candida orthopsilosis]
Length = 225
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + F+DA +S+ + L TI T +W E
Sbjct: 18 LVLLGESAVGKSSIVHRFVKNTFDDARESTIGAAFLTQSITIPESQTTIKFEIWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK-FEILLC-IGNKVDLLPG 167
+ + + + V+++ ++ + W+ + Q EI++ +GNKVDL
Sbjct: 78 RYKSLAPMYYRNANSALCVYDITSRNSFTKAQDWIKELKKQAPSEIVVALVGNKVDLDDN 137
Query: 168 HPVHAE 173
V ++
Sbjct: 138 REVQSD 143
>gi|195053856|ref|XP_001993842.1| GH18937 [Drosophila grimshawi]
gi|193895712|gb|EDV94578.1| GH18937 [Drosophila grimshawi]
Length = 205
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H + AEY +L
Sbjct: 134 VDHTIAAEYANQL 146
>gi|388580622|gb|EIM20935.1| small monomeric GTPase [Wallemia sebi CBS 633.66]
Length = 191
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S++GK +++ + + +F++ D L VN TI+ + S+W EF
Sbjct: 9 LVGDSSIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISIRQTEITFSIWDLGGQREF 66
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I +G K D+ G P
Sbjct: 67 -VNMLPLVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAIPFLVGTKFDIFAGLP 125
>gi|115752504|ref|XP_001178826.1| PREDICTED: ras-related protein Rab-33B-like [Strongylocentrotus
purpuratus]
Length = 236
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R F + ++++ + + + T + LW E F
Sbjct: 26 IIVIGDSNVGKTCLTYRFCGGEFPEKTEATIGVDFREKNVTIEGETVKLQLWDTAGQERF 85
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDL 164
+ + A++ V+++ +ST ++L W+ D L + +GNK D+
Sbjct: 86 RKSMVQHYYRNVHAVIFVYDVTKMSTFESLPTWIDECDRHSLSPDTPRVLVGNKCDM 142
>gi|224068050|ref|XP_002302656.1| predicted protein [Populus trichocarpa]
gi|222844382|gb|EEE81929.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK ILSR F S S+ + T+ K +W E +
Sbjct: 22 VVVIGDSAVGKTQILSRFTKDEFCFDSKSTIGVEFQTRTVTIKGKVIKAQIWDTAGQERY 81
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
++ S L A+ +++++ T D + WV + +++ IGNKVDL+
Sbjct: 82 RAVTSAYYRGALGAM-LLYDITKRPTFDHVVRWVDELRAHADNSIVIMLIGNKVDLVDLR 140
Query: 169 PVHAE 173
V AE
Sbjct: 141 AVPAE 145
>gi|327277372|ref|XP_003223439.1| PREDICTED: ras-related protein Rab-6A-like [Anolis carolinensis]
Length = 215
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 23 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 82
Query: 112 SIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL P I D A V+VF+L +L++ W+ + ++ I++ +GNK DL
Sbjct: 83 --RSLIPSYIRDS-AAAVIVFDLTNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 139
Query: 167 GHPVHAE 173
+ E
Sbjct: 140 KRQITTE 146
>gi|392586735|gb|EIW76071.1| small GTPase [Coniophora puteana RWD-64-598 SS2]
Length = 220
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 37 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRTTITFSIWDLGGQREF 94
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 95 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDTFATFP 153
>gi|194764238|ref|XP_001964237.1| GF20817 [Drosophila ananassae]
gi|190619162|gb|EDV34686.1| GF20817 [Drosophila ananassae]
Length = 314
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG-WTINTKYYTADVSLWMAHL 107
R I+++GS+ VGK +I+++ L F + E + G ++I T D+ L A
Sbjct: 47 RHKIVVMGSAKVGKTSIITQFLYNTFSTKYKRTIEEMHQGNFSIAGVSLTLDI-LDTAGS 105
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI---LLCIGNKVDL 164
+E ++R+L IS A ++V+++ D +T + ++ I K ++ +GNK+DL
Sbjct: 106 YEFPAMRALSISS-ADAFILVYDVTDATTFEEVRAIRDQIHETKATTAVPIVVVGNKIDL 164
Query: 165 L 165
L
Sbjct: 165 L 165
>gi|92098401|gb|AAI14772.1| RAB4A, member RAS oncogene family [Bos taurus]
Length = 218
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGELLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|391337939|ref|XP_003743321.1| PREDICTED: ras-related protein Rab-1A-like [Metaseiulus
occidentalis]
Length = 207
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVVKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++ +++ D + + +K W+ ID E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVAYDVTDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AE+ ++L
Sbjct: 134 VDHSTAAEFAKQL 146
>gi|158295454|ref|XP_316217.3| AGAP006159-PA [Anopheles gambiae str. PEST]
gi|157016045|gb|EAA10814.3| AGAP006159-PA [Anopheles gambiae str. PEST]
Length = 242
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++GS VGK +++ R +S + + +N + + + +W E F
Sbjct: 8 IVVLGSQGVGKTSLVVRYVSNVYTKEISPTIGASFFTCKVNLEDFKVKMQVWDTAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L ++ + +K WV + ++Q+ +L +GNK+DL
Sbjct: 68 KAMAPLYYRNANAALLVFDLTQYNSFNEIKGWVQELQRNVQEPMVLSLVGNKLDLEA--- 124
Query: 170 VHAEYRRRLLKREES 184
+R + REE+
Sbjct: 125 ------KRAVSREEA 133
>gi|326506468|dbj|BAJ86552.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326516366|dbj|BAJ92338.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 203
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVGNKCDLADKRA 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|193690904|ref|XP_001951763.1| PREDICTED: ras-related protein Rab-1A-like [Acyrthosiphon pisum]
Length = 208
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTIKLDNKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V++ D+ T LK W+ I + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDCTDMETFTNLKQWLEEIARYACDNVNKLLVGNKCDL 125
>gi|156839424|ref|XP_001643403.1| hypothetical protein Kpol_1042p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114012|gb|EDO15545.1| hypothetical protein Kpol_1042p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 214
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G VGK ++++R + F+D ++ + T+ T + LW E F
Sbjct: 13 IVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERF 72
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLC-IGNKVDLL 165
RSL I D A+V V+++ + D + W+ + ++ E ++LC +GNK DL
Sbjct: 73 --RSLIPSYIRDSRVAIV-VYDITKKKSFDCIDKWIEDVKNERGEDNVILCVVGNKSDLT 129
Query: 166 PGHPVHAE 173
V E
Sbjct: 130 DERQVSTE 137
>gi|3309109|gb|AAC78731.1| Trab5B [Trypanosoma brucei]
Length = 203
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW 103
A+ K+ I+++G S VGK +++ RL + D +S+ + + + +W
Sbjct: 7 AAPTKKYKIVLLGDSGVGKSSLVQRLAKNEWCDNQNSTGRRVFLRYVCTVGDTAVNFDIW 66
Query: 104 MAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNK 161
E + S+ S+ ALV V+ + T + KHWV + E I++ +GNK
Sbjct: 67 DTAGQERYKSLASMYYRGAAAALV-VYEIPSWETFERAKHWVRELATNSPETIVILVGNK 125
Query: 162 VDLLPGHPV-----HAEYRR--RLLKREESSADPDFCQSGISE 197
DL A Y R LL E S+ D SG+SE
Sbjct: 126 SDLRGTSGCVSSEEAATYARELNLLFSEASAKDG----SGVSE 164
>gi|403222371|dbj|BAM40503.1| small GTP binding protein rab6 [Theileria orientalis strain
Shintoku]
Length = 222
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSS--ELLVNGWTINTKYYTADVSLWMA 105
+R I+++G + GK +I++R + ++ A ++ + L T+N + T + LW
Sbjct: 13 QRNKIVLLGEQSAGKTSIVTRFVYDHYIPAYAATIGIDFLSKVVTVNQR--TMRLQLWDT 70
Query: 106 HLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E F S+ I D +A+V V+++ + + + ++W+ I + + +++ +GNK
Sbjct: 71 AGQERFRSLMPSYIRDSSSAIV-VYDITNRESFERTRNWIKDIKDMRGDKAVIVVVGNKT 129
Query: 163 DLLPGHPVHAEYRRRLLK------REESSADPDFCQ 192
DLL V E L K RE S+ + D Q
Sbjct: 130 DLLDKRTVSFEEGESLAKEMNCFFRETSAKNGDNVQ 165
>gi|320165284|gb|EFW42183.1| sid3 [Capsaspora owczarzaki ATCC 30864]
Length = 218
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + F++ D L VN TI + S+W EF
Sbjct: 38 MVGDSQIGKTSLMVKYVEGTFDE--DYIQTLGVNFMEKTICIRNTEITFSIWDLGGQREF 95
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
I LP + + A++ +F+L+ STL+++K W + K I IG K D+ P
Sbjct: 96 -INMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKNAISFLIGTKFDIFAQSP 154
Query: 170 V--HAEYRRRLLKREESSADP-DFCQS 193
+ E R+ K ++ P FC +
Sbjct: 155 IEEQEEVTRQARKYAKAMKAPLIFCST 181
>gi|311254230|ref|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus scrofa]
Length = 203
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|308477314|ref|XP_003100871.1| CRE-RAB-18 protein [Caenorhabditis remanei]
gi|308264445|gb|EFP08398.1| CRE-RAB-18 protein [Caenorhabditis remanei]
Length = 202
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILIIG S VGK +++ R + F E A+ + V I+ +++W E
Sbjct: 14 ILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNR--VKLAIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLP 166
F + ++ V+++ S+ + L HW+ +D I + + NK+D +P
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMTEVDTYCTNDNIIKMMVANKID-MP 130
Query: 167 GHPVHAEYRRRLLKREES 184
V E + KR +
Sbjct: 131 NRVVSREEGLKFAKRHRT 148
>gi|123492550|ref|XP_001326088.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121908997|gb|EAY13865.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 194
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G+++VGK I++R S F+ S+ + T+ T + +W E F
Sbjct: 8 VVLLGATSVGKTCIVTRATSNFFDPEQVSTVGASFSAKTLQIDDTTVTLRIWDTAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L+ + + WV + + +L +GNK DL+
Sbjct: 68 RALAPMYYQGSQAAIIVFSLDSTDSFEDANQWVDELGPHFDQMPLLYLVGNKADLVDNRT 127
Query: 170 VHAE 173
V E
Sbjct: 128 VKLE 131
>gi|406695666|gb|EKC98968.1| putative Ras-related protein Rab-18 [Trichosporon asahii var.
asahii CBS 8904]
Length = 222
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF----EDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
+L+IG+S+VGK ++L R +F E A+ + V ++ + Y +S+W
Sbjct: 15 LLLIGNSSVGKSSLLLRFTDDDFLSEEETAATIGVDFKVKSVEVDGRRY--KLSIWDTAG 72
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
E F + +++V++++ +T D L W I+ E + + +GNKVD
Sbjct: 73 QERFRTLTSSYYRGAQGVILVYDVSQRNTFDELIKWFREIETYCAEDVVKIIVGNKVD 130
>gi|256082187|ref|XP_002577342.1| rab 3 and [Schistosoma mansoni]
Length = 236
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 39 DSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTA 98
D+TD+ + + +LIIG+S+VGK + L R +F A S+ + TI +
Sbjct: 25 DATDQ-NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQDKRV 83
Query: 99 DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILL 156
+ +W E + + ++++++ + + +A++ WV I ++ ++
Sbjct: 84 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWVTQIKTYSWDNAQVV 143
Query: 157 CIGNKVDLLPGHPVHAEYRRRL 178
+GNK DL+ V + R L
Sbjct: 144 LVGNKCDLVDDRAVSVDRGRHL 165
>gi|167382338|ref|XP_001736060.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901650|gb|EDR27715.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 194
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
K+ + ++G S+VGK +I + FE S + + N Y V + +
Sbjct: 5 KQIKVTLVGESSVGKSSICCVISKGVFEKTSATIGAEFIK---FNRTYKGQQVLVSLFDT 61
Query: 108 HEEFSIRSLPIS--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDL 164
E S+P S + A++MV++++ T + L++W+ + + + ++C+GNK+DL
Sbjct: 62 SGEERYHSIPQSYYRKSNAVIMVYDISRKETFEQLEYWLNDVKGNCEIDTIICVGNKIDL 121
>gi|417397129|gb|JAA45598.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 208
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
S TA V+V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 SSLIPSYIRDSTAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQ 135
Query: 170 VHAEYRRRLLK 180
V E R K
Sbjct: 136 VSIEEGERKAK 146
>gi|307177872|gb|EFN66832.1| Ras-related protein RabJ [Camponotus floridanus]
Length = 217
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++GS VGK +++ R + NF++ S + N +N + +W E F
Sbjct: 8 VVLLGSQGVGKTSLIGRYIG-NFDNVSPTIGASFFN-CKLNLGDMKIKLHVWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+ A ++VF+L ++ A+K WV + +++ +L IGNK DL
Sbjct: 66 RSMAPMYYRNANAAMLVFDLTQYNSFAAIKGWVKELQQNVEDTMVLAVIGNKSDL 120
>gi|260812171|ref|XP_002600794.1| hypothetical protein BRAFLDRAFT_95080 [Branchiostoma floridae]
gi|260812173|ref|XP_002600795.1| hypothetical protein BRAFLDRAFT_95082 [Branchiostoma floridae]
gi|229286084|gb|EEN56806.1| hypothetical protein BRAFLDRAFT_95080 [Branchiostoma floridae]
gi|229286085|gb|EEN56807.1| hypothetical protein BRAFLDRAFT_95082 [Branchiostoma floridae]
Length = 231
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 37 EMDSTDRASLEKRP-GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY 95
E++ST +KR I++IG SNVGK + R F D ++++ + T+
Sbjct: 12 ELESTFSVEKQKRIFKIIVIGDSNVGKTCLTFRFCGGKFPDKTEATIGVDFRERTLEIDT 71
Query: 96 YTADVSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI 154
T + LW E F + + A+V V+++ L++ + + W+ D
Sbjct: 72 ETIKLQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTKLASFENMPAWIDECDRHSLSA 131
Query: 155 ---LLCIGNKVD 163
+ +GNK D
Sbjct: 132 DVPRILVGNKCD 143
>gi|451851944|gb|EMD65242.1| hypothetical protein COCSADRAFT_36566 [Cochliobolus sativus ND90Pr]
gi|451995245|gb|EMD87713.1| hypothetical protein COCHEDRAFT_1023128 [Cochliobolus
heterostrophus C5]
Length = 205
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + LW E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTKEVLVDDRLVT--MQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW-------VPSIDLQKFEILLCIGNKV 162
F + V+V+++N+ + D L W +D + F ++ IGNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFDTLDSWRDEFLVQASPMDPESFPFVV-IGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQS--GISETEGSS 202
D+ E +R++ + + A FCQS GI E S+
Sbjct: 128 DV--------EESKRMISSKRAMA---FCQSKGGIPYFETSA 158
>gi|449458327|ref|XP_004146899.1| PREDICTED: ras-related protein RABD2a-like [Cucumis sativus]
gi|449519234|ref|XP_004166640.1| PREDICTED: ras-related protein RABD2a-like [Cucumis sativus]
Length = 201
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK D LP
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCD-LPNRA 129
Query: 170 VHAE 173
V E
Sbjct: 130 VSYE 133
>gi|223997470|ref|XP_002288408.1| rab-type small G protein [Thalassiosira pseudonana CCMP1335]
gi|223998436|ref|XP_002288891.1| rab-type small GTPase [Thalassiosira pseudonana CCMP1335]
gi|220975516|gb|EED93844.1| rab-type small G protein [Thalassiosira pseudonana CCMP1335]
gi|220975999|gb|EED94327.1| rab-type small GTPase [Thalassiosira pseudonana CCMP1335]
Length = 181
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV-------SLWM 104
+L+IG S VGK +L R A+DS S + I+ K +V +W
Sbjct: 13 LLMIGDSGVGKTCLLLRY-------ANDSFSPTFITTIGIDFKIKNVEVDGKRIKLQIWD 65
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI----DLQKFEILLCIGN 160
E F + +++V+++ D + +++++W+ I D+ +IL +GN
Sbjct: 66 TAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKIL--VGN 123
Query: 161 KVDLLPGHPVHAEYRRRLLK 180
K D+L V E ++L K
Sbjct: 124 KCDMLDEKVVSTEEGQKLAK 143
>gi|198468657|ref|XP_001354779.2| GA12239 [Drosophila pseudoobscura pseudoobscura]
gi|198146509|gb|EAL31834.2| GA12239 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG-WTINTKYYTADVSLWMAHL 107
R I+++GS+ VGK +I+++ L F + E + G ++I T D+ L A
Sbjct: 47 RHKIVVMGSAKVGKTSIITQFLYNTFSPKYKRTIEEMHQGNFSIAGVSLTLDI-LDTAGS 105
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI---LLCIGNKVDL 164
+E ++R+L IS A ++V+++ D ST + ++ I K ++ +GNK+DL
Sbjct: 106 YEFPAMRALSISS-ADAFILVYDVTDSSTFEEVRAIRDQIHETKATTAVPIVVVGNKIDL 164
Query: 165 L 165
L
Sbjct: 165 L 165
>gi|410907411|ref|XP_003967185.1| PREDICTED: rab-like protein 2A-like [Takifugu rubripes]
Length = 223
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY 96
E+D D + +++ I+ +G S VGK ++ R L + S+ L + T
Sbjct: 10 ELDQNDYDA-DEQVKIICLGDSAVGKSKLMERFLMDKYRPHQLSTYALTLYKHTATVGNK 68
Query: 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILL 156
T V W E F + A +MVF++ T L +W + + EI
Sbjct: 69 TVAVDFWDTAGQERFQSMHPSYYHKAHACIMVFDVQRKITYKNLANWYKELREYRPEIPC 128
Query: 157 C-IGNKVDL 164
C + NK+D+
Sbjct: 129 CVVANKIDV 137
>gi|72392251|ref|XP_846926.1| small GTP-binding protein Rab1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|38224657|gb|AAR14146.1| Rab1 [Trypanosoma brucei]
gi|62175231|gb|AAX69377.1| small GTP-binding protein Rab1, putative [Trypanosoma brucei]
gi|70802956|gb|AAZ12860.1| small GTP-binding protein Rab1, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261330114|emb|CBH13098.1| small GTP-binding protein Rab1, putative [Trypanosoma brucei
gambiense DAL972]
Length = 208
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV-------SLWM 104
+L+IG S VGK +L R A DS +E ++ ++ K T D+ +W
Sbjct: 11 LLLIGDSGVGKSCLLLRF-------ADDSYTESYISTIGVDFKIRTLDIDGKVIKLQIWD 63
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKV 162
E F + +++V++ D+ + + +K W+ ID E + L +GNK
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIDKFASENVNKLLVGNKC 123
Query: 163 DLLPGHPVHAE 173
DL+ V +
Sbjct: 124 DLVTKKAVDTQ 134
>gi|78042536|ref|NP_001030212.1| ras-related protein Rab-19 [Bos taurus]
gi|109892951|sp|Q3ZC27.1|RAB19_BOVIN RecName: Full=Ras-related protein Rab-19
gi|73587379|gb|AAI02962.1| RAB19, member RAS oncogene family [Bos taurus]
gi|296488160|tpg|DAA30273.1| TPA: RAB19, member RAS oncogene family [Bos taurus]
Length = 217
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ S + +A ++ + V I+ K + +W E
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGK--KVKMQVWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F + A ++ ++L ST +++ HW+ I+ +++ IGNK DL
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDL 134
>gi|355746311|gb|EHH50936.1| hypothetical protein EGM_01844, partial [Macaca fascicularis]
Length = 209
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 6 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W + Q I+LC GNK DL
Sbjct: 66 RSVTRSYYRGAAGALLVYDITSRETYNALTNWSTDARMLASQNIVIILC-GNKKDL 120
>gi|346464805|gb|AEO32247.1| hypothetical protein [Amblyomma maculatum]
Length = 212
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G+ VGK +I++R F A+ + +N + LW E F
Sbjct: 14 VVLLGALGVGKTSIITRYSQKKFLGATSPTIGASFTTLRVNVGNDRVKIQLWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+ + A ++ +++ S+ +A+K W + ++++ +L+ +GNK DL
Sbjct: 74 RAMAPLYYRKANAAILAYDITSSSSYEAMKQWAIELRRNVEEAIVLVLVGNKCDL 128
>gi|324518786|gb|ADY47204.1| Ras-related protein Rab-10 [Ascaris suum]
Length = 200
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +I+ R F S+ + TI + + +W E F
Sbjct: 11 LLLIGDSGVGKTSIIHRFTEDAFSPTYISTIGIDFKIKTIEVRGKRIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +V+V+++ D + D + W+ I+L E + + + NK D++
Sbjct: 71 HTITTSYYRGAMGIVVVYDITDEGSFDNIAKWLRYIELHASEDVQKILLANKCDVIERRA 130
Query: 170 VHAEYRRRLLK 180
V +E ++ K
Sbjct: 131 VSSERGEKIAK 141
>gi|16974365|gb|AAL31108.1| AT4g17530/dl4800c [Arabidopsis thaliana]
Length = 202
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++ +++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSTE 134
>gi|403217405|emb|CCK71899.1| hypothetical protein KNAG_0I01080 [Kazachstania naganishii CBS
8797]
Length = 253
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G VGK +I+ R +S +F + + + +N +T +W E F
Sbjct: 10 LVLLGEVAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVNINEHTIKFEIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ + A ++V+++ + +HWV + Q + I+ +GNK+D+L P
Sbjct: 70 ASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLDEDP 129
Query: 170 VHAEYRRRLLKREES 184
R + REE
Sbjct: 130 TE-----RKVAREEG 139
>gi|390596104|gb|EIN05507.1| small monomeric GTPase [Punctularia strigosozonata HHB-11173 SS5]
Length = 223
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 39 DSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYY 96
D + +S+ + G+ +G S +GK +++ + + +F++ D L VN TI+ +
Sbjct: 27 DDKNNSSVVIKVGM--VGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRT 82
Query: 97 TADVSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEI 154
T S+W EF + LP + + A++ +F+L+ STL+++K W + K I
Sbjct: 83 TITFSIWDLGGQREF-VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAI 141
Query: 155 LLCIGNKVDLLPGHP 169
IG K D P
Sbjct: 142 PFLIGTKFDTFATFP 156
>gi|408784807|gb|AFU91386.1| small GTP binding protein [Arachis hypogaea]
Length = 206
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L + +T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW--------VPSIDLQKFEILLCIGNK 161
F + V+V+++N + + D L +W PS D + F ++ IGNK
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS-DPENFPFVV-IGNK 126
Query: 162 VDLLPGH 168
VD+ G+
Sbjct: 127 VDIDGGN 133
>gi|426216683|ref|XP_004002587.1| PREDICTED: ras-related protein Rab-13 [Ovis aries]
gi|81674373|gb|AAI09841.1| RAB13, member RAS oncogene family [Bos taurus]
gi|296489679|tpg|DAA31792.1| TPA: ras-related protein Rab-13 [Bos taurus]
Length = 203
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|145528788|ref|XP_001450188.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833841|emb|CAI39374.1| rab_A08 [Paramecium tetraurelia]
gi|124417788|emb|CAK82791.1| unnamed protein product [Paramecium tetraurelia]
Length = 294
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G S+VGK +++ + L F S S+ + + V LW E F
Sbjct: 17 IVFLGQSSVGKTSLIKQFLKNEFVMKSMSTVGVTCESKIVIVNNQQVKVQLWDTAGQERF 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL 164
+ A+V+V+++ ++ + D + W+ D ++ I + +GNK+D+
Sbjct: 77 RSITKNYYRGCDAVVIVYDVTNMKSFDQVSSWIADFDDKCERPAIKMLLGNKIDM 131
>gi|407922523|gb|EKG15620.1| Ras GTPase [Macrophomina phaseolina MS6]
Length = 205
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 29/204 (14%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + LW E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTKEVLVDDRLVT--MQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW-------VPSIDLQKFEILLCIGNKV 162
F + V+V+++N+ + D L W +D + F ++ IGNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNAKSFDTLDSWRDEFLIQASPMDPESFPFVV-IGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQS--GIS--ETEGSSLLGDEEPSWEIRRSCL 218
D+ E +R++ + + A FC S GI ET + E+ I R L
Sbjct: 128 DV--------EESKRMISTKRAMA---FCNSKGGIPYFETSAKEAINVEQAFEVIARQAL 176
Query: 219 --EWCTEHRIEYIEACASNVDFDK 240
E + ++ E N+D D+
Sbjct: 177 AQEEAGDFNQDFPETIPINLDQDR 200
>gi|303390551|ref|XP_003073506.1| GTP-binding protein [Encephalitozoon intestinalis ATCC 50506]
gi|303302653|gb|ADM12146.1| GTP-binding protein [Encephalitozoon intestinalis ATCC 50506]
Length = 198
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +GSSNVGK T++S+ L + + + L TI + + LW E F
Sbjct: 7 IVFLGSSNVGKTTLMSQYLHQEVQRSYGPTIGLDFVSTTIVVSGHRVRLQLWDTAGQERF 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL------QKFEILLCIGNKVDL 164
+ + ++VF++ D ++ + + HW+ ++ K IL+ +GNK DL
Sbjct: 67 NSIIPNYTRNSFLAIIVFDMKDKASFERIDHWINTLTKANDNPGSKVRILI-VGNKKDL 124
>gi|258564008|ref|XP_002582749.1| vacuolar protein sorting-associated protein 21 [Uncinocarpus reesii
1704]
gi|237908256|gb|EEP82657.1| vacuolar protein sorting-associated protein 21 [Uncinocarpus reesii
1704]
Length = 264
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNDDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|410912076|ref|XP_003969516.1| PREDICTED: ras-related protein Rab-4A-like [Takifugu rubripes]
Length = 213
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKRFKDESNHTIGVEFGSKIINVVSKMVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL W+ + Q I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTTWLSDARMLASQNIVIILC-GNKKDL 125
>gi|291221084|ref|XP_002730555.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 237
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEE 110
++I+G S++GK T++ R L F D S + + + W +V++W E+
Sbjct: 14 VVIMGDSSIGKTTLIHRYLDGKFTDVSTTIGASFFLKQWG------PYNVAIWDTAGEEK 67
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSID-LQKFEILLCIGNKVDLL 165
FS S +A ++ +++ D T D+L+ +P ++ +K + + +G K+DL+
Sbjct: 68 FSTLSSFYCRNASAAILAYDICDRETFDSLQTRHLPLLEAAEKNCLAVAVGTKLDLV 124
>gi|3024500|sp|Q40191.1|RB11A_LOTJA RecName: Full=Ras-related protein Rab11A; Flags: Precursor
gi|1370142|emb|CAA98177.1| RAB11A [Lotus japonicus]
Length = 226
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK IL+R F S S+ + T+ + T +W E +
Sbjct: 20 VVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERY 79
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ ++V+++ T D + W+ + K +++ IGNK DL+
Sbjct: 80 RAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRD 139
Query: 170 VHAEYRRRLLKRE 182
V E + ++E
Sbjct: 140 VPTEDAKEFAEKE 152
>gi|399219055|emb|CCF75942.1| unnamed protein product [Babesia microti strain RI]
Length = 220
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
K+ I+++G + GK +I++R + FE ++ + TI K + LW
Sbjct: 16 KKYKIVLLGEQSSGKTSIVTRFMYDTFESTYQATIGIDFLSKTITVKKTQLRLQLWDTAG 75
Query: 108 HEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
E F S+ I D +A V+ +++ + + + W+ + ++ IL+ +GNK DL
Sbjct: 76 QERFRSLMPSYIRDS-SAAVITYDITNRKSFENTTKWIDDVRRERANNAILILVGNKTDL 134
Query: 165 LPGHPVHAE 173
+ V E
Sbjct: 135 VDKRQVSYE 143
>gi|440892898|gb|ELR45890.1| Ras-related protein Rab-13, partial [Bos grunniens mutus]
Length = 205
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 13 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 73 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 132
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 133 VQKEQADKLAR 143
>gi|348522973|ref|XP_003448998.1| PREDICTED: ras-related protein Rab-1A-like [Oreochromis niloticus]
Length = 212
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDMDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ + + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEQESFNNVKQWLDEIDRYACENVSRLLVGNKSDLVSKKV 130
Query: 170 VHA 172
V A
Sbjct: 131 VDA 133
>gi|315040105|ref|XP_003169430.1| GTP-binding protein ypt5 [Arthroderma gypseum CBS 118893]
gi|311346120|gb|EFR05323.1| GTP-binding protein ypt5 [Arthroderma gypseum CBS 118893]
Length = 216
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 19 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDETTTVKFEIWDTAGQER 78
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ ++LD K WV + Q E I+ GNK+DL+
Sbjct: 79 YKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIIIALAGNKLDLVNES 138
Query: 169 P 169
P
Sbjct: 139 P 139
>gi|296416275|ref|XP_002837806.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633689|emb|CAZ81997.1| unnamed protein product [Tuber melanosporum]
Length = 219
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L T+ ++ T +W E
Sbjct: 16 LVLLGEAAVGKSSLVLRFVNDDFQENKEPTIGAAFLTQRCTLPSR--TIKFEIWDTAGQE 73
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F S+ + + TALV V+++ ++L KHWV + Q ++ +GNK+DL
Sbjct: 74 RFASLAPMYYRNAQTALV-VYDITKPTSLTKAKHWVSELQRQASPGIVIALVGNKLDL 130
>gi|440295983|gb|ELP88830.1| hypothetical protein EIN_368780 [Entamoeba invadens IP1]
Length = 201
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK ++ R F+ S+ + N T+ T + +W E F
Sbjct: 14 VLVIGESSVGKTAMMERFCENQFKGDYMSTIGMDFNTKTVTVNGTTCKLKIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIGNKVDLLPGHPV 170
+ ++V+++ + T + L +W+ ++ E ++ +GNK D + V
Sbjct: 74 RNVTTSYYRGTQGCLVVYDVCNRGTFEMLDYWIDEYKREQPESEIIIVGNKTDNINERTV 133
Query: 171 HAEYRRRLLK 180
+ + K
Sbjct: 134 TDQQAEQFSK 143
>gi|431892392|gb|ELK02832.1| Ras-related protein Rab-13 [Pteropus alecto]
Length = 184
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----- 164
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKSDMEAKRK 130
Query: 165 LPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202
+PG R ++ E+SA +S ++ EG+S
Sbjct: 131 VPGEQADKLAREHGIRFFETSA-----KSSMNVDEGNS 163
>gi|409083334|gb|EKM83691.1| hypothetical protein AGABI1DRAFT_110327 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201612|gb|EKV51535.1| hypothetical protein AGABI2DRAFT_189775 [Agaricus bisporus var.
bisporus H97]
Length = 203
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F ++ ++ L ++ K A + LW E
Sbjct: 8 VVILGDSGVGKTSLMNQYVNKRFNTQYKATIGADFLTKEVVVDDK--AATMQLWDTAGQE 65
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-------KFEILLCIGNKV 162
F + V+V+++N+ + DAL W +Q F +L +GNK+
Sbjct: 66 RFQSLGVAFYRGADCCVLVYDVNNTKSFDALDSWRDEFLIQASPQDPDNFPFVL-LGNKI 124
Query: 163 DLLPGH-PV 170
D+ G+ PV
Sbjct: 125 DVEEGNRPV 133
>gi|367051801|ref|XP_003656279.1| hypothetical protein THITE_2069455 [Thielavia terrestris NRRL 8126]
gi|347003544|gb|AEO69943.1| hypothetical protein THITE_2069455 [Thielavia terrestris NRRL 8126]
Length = 219
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +I+ R + F+ +S+ TI+ + T +W E
Sbjct: 21 LVLLGESAVGKSSIVLRFVKDQFDSYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQER 80
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ ++LD K WV + Q E I+ GNK+DL+
Sbjct: 81 YKSLAPMYYRNANCAVVVYDITQATSLDKAKSWVKELQRQANENIIIALAGNKLDLVAEQ 140
Query: 169 P 169
P
Sbjct: 141 P 141
>gi|328767509|gb|EGF77558.1| hypothetical protein BATDEDRAFT_20617 [Batrachochytrium
dendrobatidis JAM81]
Length = 208
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 25/187 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M ++ AS + +L+IG S VGK +L R F D S + S + G +
Sbjct: 1 MATSKNASYDYLIKLLLIGDSGVGKSCLLLR-----FSDDSFTPSFITTIGIDFKIRTIE 55
Query: 98 AD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
D + +W E F + +++ +++ D + + +++W+ +I+
Sbjct: 56 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLTYDVTDERSFNNIRNWIRNIEQHAS 115
Query: 153 EIL--LCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS--ETEGSSLLGDEE 208
E + + IGNK D+L ++++ +E+ A D + GI ET S +G EE
Sbjct: 116 EGVNKILIGNKCDILD---------KKVISKEQGQALAD--EHGIKFLETSAKSNIGVEE 164
Query: 209 PSWEIRR 215
+ + R
Sbjct: 165 AFYMLAR 171
>gi|410905643|ref|XP_003966301.1| PREDICTED: ras-related protein Rab-13-like [Takifugu rubripes]
Length = 200
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + TI+ + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIDVDGKKVKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + + +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVSRMLLGNKCDIEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L K
Sbjct: 131 VSKETGEKLAK 141
>gi|407863091|gb|EKG07877.1| small GTP-binding protein Rab18, putative [Trypanosoma cruzi]
Length = 218
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-------VSLWM 104
+ ++G S VGK +++ S F+ D SS + ++ N + A+ + LW
Sbjct: 11 VFLLGDSGVGKSSLMLSFASGTFD--PDISSTIGIDFKVKNVEVMDANGVKRNVNIHLWD 68
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL------QKFEILLCI 158
E F + A+V+V+++N+ T L+ W+ D+ + + L I
Sbjct: 69 TAGQERFRTLTSSYYRGANAVVLVYDVNEPQTFHGLQRWMEEADVFCRNDDEDDAVYLLI 128
Query: 159 GNKVDLLPGHPVHAE 173
GNK+D G E
Sbjct: 129 GNKIDKCVGGSSEGE 143
>gi|395328454|gb|EJF60846.1| ras-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 227
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYT 97
S D+A+ +L+IG+S+VGK ++L R + ED S ++ + ++ K
Sbjct: 4 SQDKATAPINVKLLLIGNSSVGKSSLLLRFSDEQWLPEDESSATIGVDFRVHKMDVKGKK 63
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEIL 155
+S+W E F + +++V+++ + + DAL W ++ + +
Sbjct: 64 VKLSIWDTAGQERFRTITSSYYRGAQGIILVYDVANRESFDALPKWFSELETYVSSSVVK 123
Query: 156 LCIGNKVDLLPGHPVHAEYRRRLLKRE 182
+ +GNKVD EY R++ E
Sbjct: 124 IIVGNKVD--------KEYSRQVSASE 142
>gi|429328144|gb|AFZ79904.1| Ras-related rab6 small GTP-binding protein, putative [Babesia equi]
Length = 224
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M +D + +R I+++G + GK +I++R + +F A ++ + T+ T
Sbjct: 1 MALSDGNTPGQRNKIVLLGEQSAGKTSIVTRFVYDHFIPAYAATIGIDFLSKTVTANGKT 60
Query: 98 ADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--I 154
+ LW E F S+ I D +A ++V+++ + + K WV I + + +
Sbjct: 61 MRLQLWDTAGQERFRSLMPSYIRDS-SAAIVVYDITNRDSFTRTKQWVQEIKDMRGDKAV 119
Query: 155 LLCIGNKVDLLPGHPVHAE 173
++ +GNK DLL V E
Sbjct: 120 IVIVGNKTDLLDKRKVSYE 138
>gi|145531201|ref|XP_001451369.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833848|emb|CAI39377.1| rab_A76 [Paramecium tetraurelia]
gi|124419020|emb|CAK83972.1| unnamed protein product [Paramecium tetraurelia]
Length = 209
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G + VGK +I++R F + ++ + TI TK + ++++W E++
Sbjct: 13 VVFLGENKVGKTSIITRYFYNTFSEKTEVTVCDFCKYKTIQTKNGSIELAVWDTAGQEKY 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-----ILLCIGNKVDL 164
+ + A ++V+N+ T ++ W+ +LQ+F I + +GNK DL
Sbjct: 73 HALAPIYYRKADAAIIVYNITVQQTFQNVRLWIQ--ELQQFSQNANIIPVIVGNKDDL 128
>gi|7767071|pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +I+ R +S +F + + + + L TIN +T +W E
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--HTVKFEIWDTAGQE 63
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ + +HWV + Q + I+ +GNK+D L
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ- 122
Query: 168 HPVHAEYRRRLLKREES 184
E R + REE
Sbjct: 123 -----EGGERKVAREEG 134
>gi|324506590|gb|ADY42810.1| Ras-related protein Rab-1A [Ascaris suum]
Length = 202
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDITDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDLTSKRA 130
Query: 170 VH 171
V
Sbjct: 131 VE 132
>gi|224119896|ref|XP_002331089.1| predicted protein [Populus trichocarpa]
gi|118486589|gb|ABK95133.1| unknown [Populus trichocarpa]
gi|222872817|gb|EEF09948.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T+ + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTSKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKV 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|66792866|ref|NP_001019711.1| ras-related protein Rab-13 [Bos taurus]
gi|75069879|sp|Q58DS5.1|RAB13_BOVIN RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|61553216|gb|AAX46369.1| RAB13, member RAS oncogene family [Bos taurus]
Length = 203
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>gi|225718924|gb|ACO15308.1| Ras-related protein ORAB-1 [Caligus clemensi]
Length = 201
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + LK W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQDSFNNLKQWLQEIDRYACENVNKLLVGNKCDL 125
>gi|170116620|ref|XP_001889500.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635502|gb|EDQ99808.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 247
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 37 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRTTITFSIWDLGGQREF 94
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 95 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDQFATFP 153
>gi|50305705|ref|XP_452813.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641946|emb|CAH01664.1| KLLA0C13728p [Kluyveromyces lactis]
Length = 208
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G + VGK +I+ R +S +F + + + +N +T +W E F
Sbjct: 10 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVNMADHTIKFEIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDLLPGHP 169
+ + A ++V+++ + +HWV + Q K ++ +GNK+DLL
Sbjct: 70 ASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKGIVIALVGNKMDLL---- 125
Query: 170 VHAEYRRRLLKRE 182
+E R++ K E
Sbjct: 126 -ESEEDRKVAKEE 137
>gi|327298001|ref|XP_003233694.1| RAB GTPase [Trichophyton rubrum CBS 118892]
gi|326463872|gb|EGD89325.1| RAB GTPase [Trichophyton rubrum CBS 118892]
gi|326470113|gb|EGD94122.1| RAB GTPase [Trichophyton tonsurans CBS 112818]
gi|326484352|gb|EGE08362.1| GTP-binding protein ypt5 [Trichophyton equinum CBS 127.97]
Length = 216
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +++ R + F+D +S+ TI+ + T +W E
Sbjct: 19 LVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTISLDETTTVKFEIWDTAGQER 78
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ ++LD K WV + Q E I+ GNK+DL+
Sbjct: 79 YKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIIIALAGNKLDLVNES 138
Query: 169 P 169
P
Sbjct: 139 P 139
>gi|66361567|pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
gi|66361568|pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
gi|66361569|pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
gi|66361570|pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
gi|66361571|pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 13 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 73 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 127
>gi|47225306|emb|CAG09806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 16/184 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 13 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 72
Query: 112 SIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL P I D A+V V+++ +L++ W+ + ++ I++ +GNK DL
Sbjct: 73 --RSLIPSYIRDSTIAVV-VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 129
Query: 167 GHPVHAEYRRRLLKRE-----ESSADPDFCQSGISETEGSSLLGDE---EPSWEIRRSCL 218
+ E + K E+SA + + ++L G + E S E +RSC
Sbjct: 130 KRQITTEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMDSTPEKSKEDKRSCR 189
Query: 219 EWCT 222
+ T
Sbjct: 190 QRVT 193
>gi|336366022|gb|EGN94370.1| hypothetical protein SERLA73DRAFT_188215 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378696|gb|EGO19853.1| hypothetical protein SERLADRAFT_478249 [Serpula lacrymans var.
lacrymans S7.9]
Length = 226
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 43 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRTTITFSIWDLGGQREF 100
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 101 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDTFATFP 159
>gi|326506496|dbj|BAJ86566.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 203
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTMKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDLDSFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|195470132|ref|XP_002099987.1| GE16798 [Drosophila yakuba]
gi|194187511|gb|EDX01095.1| GE16798 [Drosophila yakuba]
Length = 197
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +++ R + F++ D + + +N V+LW E F
Sbjct: 8 LLVIGESGVGKSSLIHRFVENKFDENHDVTIGMDFKSKVMNVDGIDYKVALWDTAGAERF 67
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLP 166
RSL S AL ++V+++++ +L L+ W+ +D ++ +GNK+D
Sbjct: 68 --RSLTPSFYRKALGAIVVYDISNRDSLVKLEAWLAELDSYSDNPNIAIIVVGNKID--- 122
Query: 167 GHPVHAEYRRRLLKREE 183
+ R++ REE
Sbjct: 123 --------QERVVDREE 131
>gi|448520296|ref|XP_003868272.1| Tem1 protein [Candida orthopsilosis Co 90-125]
gi|380352611|emb|CCG22838.1| Tem1 protein [Candida orthopsilosis]
Length = 198
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINT 93
+E D ++ +L+ I +IG S +GK +++ + + +F++ D L VN I
Sbjct: 3 EEQDQNNQVALK----IGLIGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMDKRIQI 56
Query: 94 KYYTADVSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQK 151
+ T S+W +EF I LP +S+ A++ +F+L STL+++K W + K
Sbjct: 57 RNTTIMFSIWDLGGQKEF-INMLPLVSNDAVAILFMFDLTRKSTLNSIKEWYRQVRGFNK 115
Query: 152 FEILLCIGNKVD 163
I IG K D
Sbjct: 116 TAIPFLIGTKYD 127
>gi|313233327|emb|CBY24441.1| unnamed protein product [Oikopleura dioica]
Length = 221
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110
IL+IG + VGK ++ R + FE + + V + + +W E
Sbjct: 21 ILLIGEAGVGKTHLILRYVDNIFEPQLVKVTVQPDVKSKDLTVHDKKVRLRIWDTAGSER 80
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDLLPGH 168
F + +++V+++ D +T +K W+ +D+ K +++ +GNK DL
Sbjct: 81 FRAINRSFFRNALGVIVVYDVTDKNTFAKVKSWIEEVDVNCDKQPVVILVGNKTDLAEQR 140
Query: 169 PVHAEYRRRLLKREE 183
V + R L KR +
Sbjct: 141 KVSTQEGRELAKRHK 155
>gi|300120173|emb|CBK19727.2| unnamed protein product [Blastocystis hominis]
Length = 210
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
+ ++ + + + +L+IG S VGK +L + S F ++ + T+N T
Sbjct: 2 AANKKNFDMQIKLLMIGDSGVGKTCLLMQYASKTFIKTFITTIGIDFKIKTVNVLGKTVK 61
Query: 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI----DLQKFEIL 155
+ +W E F + +++V+++ D ++ +++ W+ I D +IL
Sbjct: 62 LQIWDTAGQERFRTITTSYVRGSEGILLVYDVTDRNSFESISSWMEQISQHADSSVNKIL 121
Query: 156 LCIGNKVDLLPGHPVHAEYRRRLLKR 181
IGNK DL V E R+L +R
Sbjct: 122 --IGNKCDLEAQRAVSTEEGRKLAER 145
>gi|255071629|ref|XP_002499489.1| ras-related gtp-binding protein [Micromonas sp. RCC299]
gi|226514751|gb|ACO60747.1| ras-related gtp-binding protein [Micromonas sp. RCC299]
Length = 204
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDAESFNNVKQWLNEIDRYANENVNKLLVGNKSDLTAKRA 130
Query: 170 VHAE 173
V E
Sbjct: 131 VDYE 134
>gi|320038412|gb|EFW20348.1| GTP-binding protein YPT52 [Coccidioides posadasii str. Silveira]
Length = 267
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|229367302|gb|ACQ58631.1| Ras-related protein Rab-6B [Anoplopoma fimbria]
Length = 208
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ ++ T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYSEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++S+ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVSSFQQTSKWIEDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAE 173
+ E
Sbjct: 133 KRQITIE 139
>gi|50308977|ref|XP_454494.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643629|emb|CAG99581.1| KLLA0E12079p [Kluyveromyces lactis]
Length = 214
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVS-------LWM 104
IL++G S VGK +L R + D + + I+ K T D++ LW
Sbjct: 23 ILLLGDSGVGKSCLLVRFVE-------DKFTPTFITTIGIDFKIKTVDINGKRVKLQLWD 75
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E F + +V+++++ D T + ++ W +++ E ++L +GNK
Sbjct: 76 TAGQERFRTITTAYYRGAMGIVLIYDVTDERTFENIRQWFSTVNQHASEDVVMLLVGNKK 135
Query: 163 DL 164
D+
Sbjct: 136 DM 137
>gi|293332195|ref|NP_001169100.1| uncharacterized protein LOC100382944 [Zea mays]
gi|223974943|gb|ACN31659.1| unknown [Zea mays]
gi|358365497|dbj|GAA82119.1| RAB GTPase Vps21/Ypt51 [Aspergillus kawachii IFO 4308]
Length = 262
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL-- 165
F+ + A ++V+++ S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDLTND 135
Query: 166 ----PGH-PVHAEYRRRLLKREESSADPDFCQ 192
G P AE +E++ +P Q
Sbjct: 136 GNEAAGESPADAEGESSTADADETAEEPQEAQ 167
>gi|62736278|gb|AAX97468.1| small Rab GTPase RabC2 [Trichomonas vaginalis]
Length = 188
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G + VGK +L+RL++ F+ S ++ + + T + +W E+
Sbjct: 3 IVLVGDTQVGKTCVLARLINKEFKSDSQATIGAAFQNYFLQTPAGFVQLQIWDTAGQEQ- 61
Query: 112 SIRSL-PISDQLTALVMVF-NLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDL 164
RSL P+ + ++ ++F ++ +L + ALK W+ + + + +I++ +GNK DL
Sbjct: 62 -SRSLAPMYYRAASVAILFYDVTNLKSFQALKDWMDELQEKAPVQLQIVI-VGNKCDL 117
>gi|395507954|ref|XP_003758282.1| PREDICTED: ras-related protein Rab-1A [Sarcophilus harrisii]
Length = 329
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 138 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 197
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 198 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 252
>gi|358387599|gb|EHK25193.1| secretion-related small GTPase [Trichoderma virens Gv29-8]
Length = 220
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 43 RASLEKRPGI---------LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN- 92
RA RPG+ +++G S VGK +I+ R + F+ +S+ TI+
Sbjct: 4 RAPPAGRPGLNTRFAQFKLVLLGESAVGKSSIVLRFVKDQFDSFRESTIGAAFLTQTISL 63
Query: 93 TKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ T +W E + + V+V+++ ++LD K WV + Q
Sbjct: 64 DENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQAN 123
Query: 153 E--ILLCIGNKVDLLPGHP 169
E I+ GNK+DL+ P
Sbjct: 124 ENIIIALAGNKLDLVTEQP 142
>gi|123407148|ref|XP_001302944.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121884280|gb|EAX90014.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 195
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG+++ GK +IL RL+ +F D + ++ + + T ++++W E +
Sbjct: 12 VVLIGAASSGKTSILRRLIFGSFPDDVTPTLGAALSTYQVKCGTSTVNMNVWDTAGQESY 71
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVD 163
S+ L D A V+VF++ + + ++ W+ +D+ + ++ +GNKVD
Sbjct: 72 RSLAKLYYRDA-KAAVVVFDVCSIESFREVEFWIGELDVSETFGHYVVIVGNKVD 125
>gi|440291312|gb|ELP84581.1| hypothetical protein EIN_171560 [Entamoeba invadens IP1]
Length = 207
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D ++ + T+ + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDTHIATIGVDFKIKTVQINGLNVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++V+++ DL T ++ W+ I+ E I L IGNK DL
Sbjct: 71 RTITSSYYRGAQGIIVVYSVIDLQTFQNVRQWLQEIERYASESVIKLLIGNKCDLEDERA 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VTVEQGQEL 139
>gi|145509727|ref|XP_001440802.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834486|emb|CAI44560.1| rab_A48 [Paramecium tetraurelia]
gi|124408030|emb|CAK73405.1| unnamed protein product [Paramecium tetraurelia]
Length = 205
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G+ NVGK IL R F ++ + I + + +W E F
Sbjct: 14 VVIVGNCNVGKSCILMRYSENYFTSQYYNTIGVDFKTRVIKIGHLNVKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID------LQKFEILLCIGNKVD-- 163
+ +V+V+++ + ST DA+ W+ ID +QK L +GNK D
Sbjct: 74 KALTNNYYRDAHGVVIVYDVTERSTFDAVDSWIEDIDKYGRKSVQK----LIVGNKADIP 129
Query: 164 ------LLPGHPVHAEYRRRLLKREESSAD 187
L G ++ R L+ ++D
Sbjct: 130 NKRKISLQEGLEKAKQFNARFLETSAKTSD 159
>gi|23397589|ref|NP_569837.2| CG13375, isoform A [Drosophila melanogaster]
gi|281359611|ref|NP_001162628.1| CG13375, isoform B [Drosophila melanogaster]
gi|4884048|emb|CAB43324.1| EG:BACR37P7.8 [Drosophila melanogaster]
gi|22831407|gb|AAF45493.2| CG13375, isoform A [Drosophila melanogaster]
gi|272505920|gb|ACZ95166.1| CG13375, isoform B [Drosophila melanogaster]
Length = 306
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG-WTINTKYYTADVSLWMAHL 107
R I+++GS+ VGK +I+++ L F + E + G ++I T D+ L A
Sbjct: 47 RHKIVVMGSAKVGKTSIITQFLYNTFSTKYKRTIEEMHQGNFSIAGVSLTLDI-LDTAGS 105
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI---LLCIGNKVDL 164
+E ++R+L IS A ++V+++ D +T + ++ I K ++ +GNK+DL
Sbjct: 106 YEFPAMRALSISS-ADAFILVYDVTDATTFEEVRTIRDQIHETKATTAVPIVVVGNKIDL 164
Query: 165 L 165
L
Sbjct: 165 L 165
>gi|353239293|emb|CCA71210.1| related to Ras-GTPase [Piriformospora indica DSM 11827]
Length = 221
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 38 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRTTITFSIWDLGGQREF 95
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ +TL+++K W + K I IG K DL P
Sbjct: 96 -VNMLPLVCNDAVAILFMFDLSRKATLNSVKEWYRQARGFNKTAIPFLIGTKYDLFASLP 154
>gi|123501259|ref|XP_001328031.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736256|gb|AAX97457.1| small Rab GTPase RabA1 [Trichomonas vaginalis]
gi|121910969|gb|EAY15808.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 195
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+IIGSS VGK +L RL+ F S+ + + +I + +W E F
Sbjct: 9 FIIIGSSGVGKTALLRRLVENKFVHDQQSTIGVEFDSTSIEVDDQVVKLQIWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDL----- 164
+ +V+VF++ + T D + W+ + ++ +GNK DL
Sbjct: 69 RSIAKAYFRNAVGVVLVFDVTERRTFDDVNMWLNDVHSLCDPSARVILVGNKTDLADSRV 128
Query: 165 LPGHPVHAEYRRRLLKREESSA 186
+P A R L E+SA
Sbjct: 129 IPVSEAEAYANHRKLAYIETSA 150
>gi|187951075|gb|AAI38509.1| RAB4A, member RAS oncogene family [Mus musculus]
Length = 213
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q ++LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILC-GNKKDL 125
>gi|66802470|ref|XP_635107.1| small GTPase [Dictyostelium discoideum AX4]
gi|60463433|gb|EAL61618.1| small GTPase [Dictyostelium discoideum AX4]
Length = 203
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + F++ D L VN TI+ + S+W EF
Sbjct: 23 MVGDSQIGKTSLMVKYVEGTFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF 80
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D+ P
Sbjct: 81 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDVFATKP 139
Query: 170 VHAEYRRRLLKREESSA 186
+ + R+ +SA
Sbjct: 140 IEEQEEITKQARKFASA 156
>gi|50082725|gb|AAT70057.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGKNFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNVKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205
I +IL GNK+DL R +K EE + D Q + E S+L G
Sbjct: 114 IPEGCVKILC--GNKLDL---------SNERAIKTEEGISKAD--QYSMYYYETSALEG 159
>gi|194743816|ref|XP_001954396.1| GF18246 [Drosophila ananassae]
gi|190627433|gb|EDV42957.1| GF18246 [Drosophila ananassae]
Length = 234
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 27/150 (18%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-------MA 105
L++G++ VGK T + L + NF + + L+V+ + T Y + LW
Sbjct: 16 LLLGNTRVGKSTFMRLLSTGNFTEEHLPTKGLMVHTLLLETNYQPLALQLWDVAGDCQHG 75
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKV 162
LH + + +++F+L+++S+ ++ WV ++ +++C GNK
Sbjct: 76 GLHNGYYFHA-------RCAIIMFDLSEISSAASVAEWVRELEAICGPDLPVVIC-GNKA 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQ 192
DL P + R LL R + ++C+
Sbjct: 128 DLNP-------FPRELLLRRRGNV--NYCE 148
>gi|391337937|ref|XP_003743320.1| PREDICTED: ras-related protein Rab-1A-like [Metaseiulus
occidentalis]
Length = 207
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVVKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++ +++ D + + +K W+ ID E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVAYDVTDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AE+ ++L
Sbjct: 134 VDHSTAAEFAKQL 146
>gi|322712113|gb|EFZ03686.1| Rab5-like protein ypt5 [Metarhizium anisopliae ARSEF 23]
Length = 220
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +I+ R + F+ +S+ TI+ + T +W E
Sbjct: 22 LVLLGESAVGKSSIVLRFVKDQFDSFRESTIGAAFLTQTISLDENTTVKFEIWDTAGQER 81
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ S+LD K WV + Q E I+ GNK+DL+
Sbjct: 82 YKSLAPMYYRNANCAVIVYDITQSSSLDKAKAWVKELQRQAKEDIIIALAGNKLDLVTEQ 141
Query: 169 P 169
P
Sbjct: 142 P 142
>gi|390979747|gb|AFM30910.1| small GTPase [Hevea brasiliensis]
Length = 203
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|388854821|emb|CCF51502.1| probable Ras-related protein Rab-18 [Ustilago hordei]
Length = 232
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVN----GWTINT 93
M S+D +L+ IL+IG+S+VGK ++L R F ++++ + V+ G +
Sbjct: 1 MSSSDIPTLK----ILLIGASSVGKSSLLLRFTDDEFLSPEETTATIGVDYRIKGIEVGG 56
Query: 94 KYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE 153
K + +S+W E F + +++ +++ T DAL W +L+ F
Sbjct: 57 KRF--KLSIWDTAGQERFRTLTSSYYRGAQGVIIAYDVTQRDTFDALPTWFN--ELETFT 112
Query: 154 -----ILLCIGNKVD 163
+ + +GNKVD
Sbjct: 113 TSEDVVKIIVGNKVD 127
>gi|403347619|gb|EJY73239.1| Rab GTPase [Oxytricha trifallax]
Length = 230
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 33 FGRQEMD-STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT- 90
F E+D S +AS KR ILI+G ++VGK +++ + FE + L V+ +T
Sbjct: 5 FSISELDYSISKAS--KRLNILILGDASVGKTSLVKLYNNETFE--LNRICTLGVDFYTR 60
Query: 91 -INTKY--YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI 147
+ ++Y T V LW E F + A+++ F++ L + + + W+ I
Sbjct: 61 KVKSEYSNQTYKVCLWDTAGQERFRSIAHTFYKSSKAIIVAFDVTSLLSFENVVVWLKGI 120
Query: 148 DLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKR 181
Q E +++ +GNKVDL + E R L +
Sbjct: 121 YQQASEEVVIILVGNKVDLKDQRRITFEQGRALANK 156
>gi|367018094|ref|XP_003658332.1| hypothetical protein MYCTH_2293959 [Myceliophthora thermophila ATCC
42464]
gi|347005599|gb|AEO53087.1| hypothetical protein MYCTH_2293959 [Myceliophthora thermophila ATCC
42464]
Length = 219
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +I+ R + F+ +S+ TI+ + T +W E
Sbjct: 21 LVLLGESAVGKSSIVLRFVKDQFDSYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQER 80
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ ++LD K WV + Q E I+ GNK+DL+
Sbjct: 81 YKSLAPMYYRNANCAVVVYDITQATSLDKAKSWVKELQRQANENIIIALAGNKLDLVTEQ 140
Query: 169 P 169
P
Sbjct: 141 P 141
>gi|145232756|ref|XP_001399777.1| vacuolar protein sorting-associated protein 21 [Aspergillus niger
CBS 513.88]
gi|134056697|emb|CAL00639.1| unnamed protein product [Aspergillus niger]
gi|350634623|gb|EHA22985.1| hypothetical protein ASPNIDRAFT_197381 [Aspergillus niger ATCC
1015]
Length = 262
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 13/152 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP- 166
F+ + A ++V+++ S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDLTND 135
Query: 167 GH------PVHAEYRRRLLKREESSADPDFCQ 192
G+ P AE +E++ +P Q
Sbjct: 136 GNEATGESPADAEGESSTADADETAEEPQEAQ 167
>gi|357163775|ref|XP_003579842.1| PREDICTED: GTP-binding protein YPTM1-like [Brachypodium distachyon]
Length = 212
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R + D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDAYVDSYISTIGVDFKIRTVEIDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGANGIIIVYDITDMESFNNVKQWLSEIDKYANDSVCKLLVGNKCDLAESRV 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|225454983|ref|XP_002281150.1| PREDICTED: GTP-binding protein YPTM2 [Vitis vinifera]
gi|297744977|emb|CBI38569.3| unnamed protein product [Vitis vinifera]
Length = 203
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|58261356|ref|XP_568088.1| ras-related protein ypt1 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115607|ref|XP_773517.1| hypothetical protein CNBI1310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256143|gb|EAL18870.1| hypothetical protein CNBI1310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230170|gb|AAW46571.1| ras-related protein ypt1, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 205
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T +K W+ ID E + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDRDTYTNVKQWLQEIDRYAVEGVNKLLVGNKSDLATKKV 131
Query: 170 V-HAEYR 175
V +AE +
Sbjct: 132 VEYAEAK 138
>gi|388520849|gb|AFK48486.1| unknown [Lotus japonicus]
Length = 202
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|145515727|ref|XP_001443763.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411152|emb|CAK76366.1| unnamed protein product [Paramecium tetraurelia]
Length = 205
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--WMA 105
K I +G+S VGK +I+ R F++ + S+ L + +Y + L W
Sbjct: 3 KEIKITFLGNSGVGKSSIVKRYCFEEFDEHNQSN--LGADYVPKEMEYQNNKIKLQIWDT 60
Query: 106 HLHEEFSIRSL-PIS-DQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNK 161
E+F RSL P+ A+++V+++ S+ LK WV S++ K ++ +GNK
Sbjct: 61 AGQEKF--RSLVPLFLRNAQAVIIVYDITQKSSFTQLKEWVSSLEQICSKNQLFFLVGNK 118
Query: 162 VDLLPGHPV 170
DL+ V
Sbjct: 119 CDLIEQEQV 127
>gi|45361477|ref|NP_989315.1| RAB6A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|39794406|gb|AAH64230.1| RAB6A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 208
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V VF++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VFDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>gi|392871044|gb|EAS32901.2| small GTP-binding protein [Coccidioides immitis RS]
Length = 267
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|303317038|ref|XP_003068521.1| Ras family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240108202|gb|EER26376.1| Ras family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 267
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|154341312|ref|XP_001566609.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063932|emb|CAM40123.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 211
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 30 VLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW 89
+L R +T ++ ++ ++++G S VGK +++ RL+ F S+ +
Sbjct: 1 MLSISRSSTPTTGPSASARKFKLVLLGESGVGKSSVVQRLMRNAFSARPHSTVGASFFRY 60
Query: 90 TINTKYYTA-DVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI 147
T + TA +W E F S+ ++ ALV VF++ T + KHW +
Sbjct: 61 TCSVADGTAVHFDIWDTAGQERFRSLAAMYYRGAAAALV-VFDIVSADTYERAKHWAREL 119
Query: 148 DLQKFEIL-LCIGNKVDL 164
+ E L + +GNK DL
Sbjct: 120 HINSPETLVMLVGNKKDL 137
>gi|389742746|gb|EIM83932.1| small GTPase [Stereum hirsutum FP-91666 SS1]
Length = 229
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 46 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRTTITFSIWDLGGQREF 103
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 104 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDTFATFP 162
>gi|330800955|ref|XP_003288497.1| hypothetical protein DICPUDRAFT_152742 [Dictyostelium purpureum]
gi|325081457|gb|EGC34972.1| hypothetical protein DICPUDRAFT_152742 [Dictyostelium purpureum]
Length = 322
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 51/230 (22%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+ ++G ++ K +L L D +D N + I+TKYY +++ L ++
Sbjct: 8 LYLVGDKDIDKNIVLKTL------DIND-------NIYKISTKYYKTSITIKSIDLDKD- 53
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVH 171
+ + +++ ++ F+ + + + +K ++ NK P
Sbjct: 54 NTNNKHLAEDSHGFILAFDSSKSESFEFIKQYIK-------------NNK-----KQPQE 95
Query: 172 AEYRRRLLKREESSADPD---FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEY 228
+ +EE D D + I+E+ S+ I EWC EH IE+
Sbjct: 96 DDGDDGHDDQEEYEGDIDDTLYLLIDINESSSSA----------IEDKIEEWCIEHLIEF 145
Query: 229 -IEACASNVDFD--KCLSIDGD---SQGVERLYGALSAHMWPGMVLKSGD 272
I AS+ D+D K + D GVER+ L ++MWP M L D
Sbjct: 146 VILDTASHRDYDIRKSELTETDPTIKYGVERVQEILESNMWPNMDLLKND 195
>gi|148679807|gb|EDL11754.1| RAB4A, member RAS oncogene family, isoform CRA_a [Mus musculus]
Length = 188
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 54 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 113
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q ++LC GNK DL
Sbjct: 114 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILC-GNKKDL 168
>gi|149239262|ref|XP_001525507.1| GTP-binding protein ryh1 [Lodderomyces elongisporus NRRL YB-4239]
gi|146451000|gb|EDK45256.1| GTP-binding protein ryh1 [Lodderomyces elongisporus NRRL YB-4239]
Length = 220
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD--------SSSELLVNGWTI 91
S+DR ++ K+ I+ +G +VGK ++++R + F++ S + L +G TI
Sbjct: 2 SSDRTNILKKYKIVFLGDQSVGKTSLITRFMYDTFDETYATTIGIDFLSKTMYLEDGKTI 61
Query: 92 NTKYYTADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
+ LW E F RSL I D A V+ +++ + + L W+ +
Sbjct: 62 R-------LQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFTNLNKWIKDVK 111
Query: 149 LQKFE--ILLCIGNKVDL 164
L++ + I++ +GNK+DL
Sbjct: 112 LERGDDVIMVLVGNKLDL 129
>gi|154412228|ref|XP_001579147.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121913351|gb|EAY18161.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 198
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IGSS VGK ++LSRL+ F + S+ + I + +W E+F
Sbjct: 11 FIVIGSSGVGKTSLLSRLIDGTFNTENQSTIGVEYLSTVIEVDGNPVKLQIWDTAGQEKF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC--------IGNKVD 163
+ ++MV+++ D + D L W+ + LC IGNK+D
Sbjct: 71 RSIAKSYFRHAVGVIMVYDITDRKSFDDLAFWLNDVH------TLCDPNASVTLIGNKLD 124
Query: 164 LLPGHPV 170
+ V
Sbjct: 125 MASSRAV 131
>gi|171184402|ref|NP_033029.2| ras-related protein Rab-4A [Mus musculus]
gi|74183520|dbj|BAE36619.1| unnamed protein product [Mus musculus]
gi|74202133|dbj|BAE23048.1| unnamed protein product [Mus musculus]
gi|112292951|dbj|BAF02853.1| Rab4A [Mus musculus]
gi|148679808|gb|EDL11755.1| RAB4A, member RAS oncogene family, isoform CRA_b [Mus musculus]
Length = 218
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q ++LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILC-GNKKDL 130
>gi|321256350|ref|XP_003193368.1| ras-related protein ypt1 [Cryptococcus gattii WM276]
gi|317459838|gb|ADV21581.1| ras-related protein ypt1, putative [Cryptococcus gattii WM276]
gi|405119560|gb|AFR94332.1| GTP-binding protein ypt1 [Cryptococcus neoformans var. grubii H99]
Length = 205
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T +K W+ ID E + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDRDTYTNVKQWLQEIDRYAVEGVNKLLVGNKSDLATKKV 131
Query: 170 V-HAEYR 175
V +AE +
Sbjct: 132 VEYAEAK 138
>gi|225713410|gb|ACO12551.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
gi|225714426|gb|ACO13059.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
gi|290462177|gb|ADD24136.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
gi|290462929|gb|ADD24512.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
gi|290463011|gb|ADD24553.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
gi|290561479|gb|ADD38140.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
gi|290561689|gb|ADD38244.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
Length = 201
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + LK W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQDSFNNLKQWLQEIDRYACENVNKLLVGNKCDL 125
>gi|224138704|ref|XP_002326669.1| predicted protein [Populus trichocarpa]
gi|222833991|gb|EEE72468.1| predicted protein [Populus trichocarpa]
Length = 203
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADGSYLDSYISTIGVDFKIRTVEQDGKTMKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYASENVNKLLVGNKSDLTANKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|225465202|ref|XP_002264623.1| PREDICTED: ras-related protein RABD1 [Vitis vinifera]
gi|297739505|emb|CBI29687.3| unnamed protein product [Vitis vinifera]
Length = 202
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VDTE 134
>gi|70999656|ref|XP_754545.1| RAB GTPase Vps21/Ypt51 [Aspergillus fumigatus Af293]
gi|66852182|gb|EAL92507.1| RAB GTPase Vps21/Ypt51, putative [Aspergillus fumigatus Af293]
gi|159127558|gb|EDP52673.1| RAB GTPase Vps21/Ypt51, putative [Aspergillus fumigatus A1163]
Length = 262
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDLTSD 135
Query: 168 HPVHAEYRRRLLKREES 184
AE + +RE S
Sbjct: 136 DGEAAEQPQANDERESS 152
>gi|196001837|ref|XP_002110786.1| hypothetical protein TRIADDRAFT_49948 [Trichoplax adhaerens]
gi|190586737|gb|EDV26790.1| hypothetical protein TRIADDRAFT_49948 [Trichoplax adhaerens]
Length = 205
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG + VGK ++L R F+ ++ + T+N + +++W E F
Sbjct: 10 ILIIGEAGVGKSSLLLRFTDDQFDPEQSATIGVDFKIKTVNVEGNRVKLAIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNK------- 161
+ +++V++ + ++ D L++W+ + ++ I + +GNK
Sbjct: 70 RTLTPSYYRGAQGVILVYDTSKRTSFDKLENWLTELRTYCTKRDVIKMLVGNKIDKDQRE 129
Query: 162 VDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197
VD L G Y ++L E S+ D Q E
Sbjct: 130 VDTLTGTNFARRY--QMLFTECSAKTCDHVQDAFDE 163
>gi|432877571|ref|XP_004073165.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oryzias
latipes]
Length = 211
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 78
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ +L++ W+ + ++ I++ +GNK DL
Sbjct: 79 --RSLIPSYIRDSTIAVV-VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 167 GHPVHAEYRRR 177
V E R
Sbjct: 136 KRQVSVEAAER 146
>gi|348526868|ref|XP_003450941.1| PREDICTED: ras-related protein Rab-13-like [Oreochromis niloticus]
Length = 200
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + TI + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIEVDGKKVKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + + +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVSRMLLGNKCDIEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L K
Sbjct: 131 VSKETGEKLAK 141
>gi|260829483|ref|XP_002609691.1| hypothetical protein BRAFLDRAFT_83704 [Branchiostoma floridae]
gi|229295053|gb|EEN65701.1| hypothetical protein BRAFLDRAFT_83704 [Branchiostoma floridae]
Length = 239
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP 145
WTI+ KYYTA+V + +A E +I + ++ L A+++ F+ + + +++K W+P
Sbjct: 46 WTIDNKYYTANVHICIAL---EKTIGNAEFAEALQAVILHFDSKEAGSFESVKQWLP 99
>gi|167387392|ref|XP_001738141.1| GTP-binding protein YPTC1 [Entamoeba dispar SAW760]
gi|165898771|gb|EDR25554.1| GTP-binding protein YPTC1, putative [Entamoeba dispar SAW760]
Length = 203
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK ++ R FE + + + + LW E F
Sbjct: 14 ILIIGESGVGKTALMQRFCDNIFEPCYMPTVGVDFKLKLMKLNNEIIKMQLWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ +++V+++ D ST D + W + ++K E ++ IGNK+DL
Sbjct: 74 RNITSSYYRGTQGVLIVYDVTDTSTFDQISSWFNEV-MRKTEHNPPVIYIIGNKMDLKDR 132
Query: 168 HPVHAEYRRRLLKR 181
V E RL+K+
Sbjct: 133 ICVQPESIERLVKK 146
>gi|89258431|gb|ABD65439.1| Rab21 [Suberites domuncula]
Length = 222
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G VGK +I+ R + F D +S+ + T+N +++W E F
Sbjct: 16 VVLLGEGAVGKTSIVLRYVENKFNDKHESTLQASFLQKTLNIGPRRIQLAIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF---EILLCI-GNKVDL 164
V+V+++ D+ + K+W+ +L++ I +CI GNK+DL
Sbjct: 76 HALGPIYYRDAQGAVVVYDITDVDSFTKAKNWIK--ELRRIVGDNIAVCIVGNKIDL 130
>gi|213406139|ref|XP_002173841.1| GTP-binding protein ypt1 [Schizosaccharomyces japonicus yFS275]
gi|212001888|gb|EEB07548.1| GTP-binding protein ypt1 [Schizosaccharomyces japonicus yFS275]
Length = 204
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC--IGNKVDL 164
+ +++V+++ D + + +K W+ ID E + C +GNK D+
Sbjct: 72 RTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRFAVEGVNCLLVGNKCDI 126
>gi|146097933|ref|XP_001468265.1| putative small GTP-binding protein Rab18 [Leishmania infantum
JPCM5]
gi|398021713|ref|XP_003864019.1| small GTP-binding protein Rab18, putative [Leishmania donovani]
gi|134072632|emb|CAM71347.1| putative small GTP-binding protein Rab18 [Leishmania infantum
JPCM5]
gi|322502253|emb|CBZ37337.1| small GTP-binding protein Rab18, putative [Leishmania donovani]
Length = 217
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSEL--------LVNGW 89
M ST A +K +L+IG S VGK ++L + F++ S+ + +V+
Sbjct: 1 MGSTTGA--DKTIKVLLIGDSGVGKSSLLLSFTTGAFDENISSTIGIDFKVKKVDVVDAH 58
Query: 90 TINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID- 148
T T ++ LW E F + A+V+V+++ND + LK W+ +
Sbjct: 59 TGGKT--TVNLQLWDTAGQERFRTLTSSYYRGAQAVVLVYDVNDPQSFHGLKKWLDEANS 116
Query: 149 -LQKFE------ILLCIGNKVDLLP 166
++ E + L IGNK DL P
Sbjct: 117 YCRRDEAESSSMVFLLIGNKTDLCP 141
>gi|255570958|ref|XP_002526430.1| protein with unknown function [Ricinus communis]
gi|223534210|gb|EEF35925.1| protein with unknown function [Ricinus communis]
Length = 202
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLIENKV 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|449461253|ref|XP_004148356.1| PREDICTED: ras-related protein RABD2c-like [Cucumis sativus]
gi|449505222|ref|XP_004162409.1| PREDICTED: ras-related protein RABD2c-like [Cucumis sativus]
Length = 202
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|62858557|ref|NP_001016006.1| RASD family, member 2 [Xenopus (Silurana) tropicalis]
gi|89271258|emb|CAJ83116.1| RASD family, member 2 [Xenopus (Silurana) tropicalis]
gi|140833142|gb|AAI36000.1| RASD family, member 2 [Xenopus (Silurana) tropicalis]
Length = 266
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 21/151 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG-WTINTKYYTADVSLWMAHLHEE 110
++++G+S VGK I+SR L+ FED + E + I Y D+ L + H
Sbjct: 22 MVVLGASRVGKSAIVSRFLNGRFEDQYTPTIEDFHRKLYNIRGDMYQLDI-LDTSGNHPF 80
Query: 111 FSIRSLPISDQLTA--LVMVFNLNDLSTLDALKHWVPSI------------DLQKFEILL 156
++R L I LT ++VF+L++ + D +K I + +F +++
Sbjct: 81 PAMRRLSI---LTGDVFILVFSLDNRDSFDEVKRLRKQILEVKSCVKNKTKETGEFPMMI 137
Query: 157 CIGNKVDLLPGH-PVHAEYRRRLLKREESSA 186
C GNK D H V AE RL+ +E+ A
Sbjct: 138 C-GNKSDHGEHHRKVRAEEAERLVSGDENCA 167
>gi|301756779|ref|XP_002914238.1| PREDICTED: ras-related protein Rab-19-like [Ailuropoda melanoleuca]
Length = 217
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK ++ S + +A ++ + +++ + +W E F
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERF 79
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ A ++ ++L ST +++ HW+ I+ +++ IGNK DL
Sbjct: 80 RTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDL 134
>gi|440297299|gb|ELP89993.1| hypothetical protein EIN_403070 [Entamoeba invadens IP1]
Length = 197
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY----TADVSLWMAHL 107
I +IG S VGK ++S+ L+ D +++ + + NTK T +V +W
Sbjct: 15 ITVIGDSGVGKSALISQFLN----RVIDPNTQPTIGNISANTKLDDGTDTLNVVIWDTAG 70
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC--IGNKVDL 164
E F + + V+VF+L D ST ++W I +C +GNK DL
Sbjct: 71 QERFKSMTDLFFREARGCVIVFDLTDYSTFIGTQNWYERICKNSVSPPVCVLVGNKKDL 129
>gi|73535722|pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 14 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 74 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 128
>gi|327276363|ref|XP_003222939.1| PREDICTED: ras-related protein Rab-4B-like [Anolis carolinensis]
Length = 406
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + +N T + +W E F
Sbjct: 204 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSKVVNVGGKTVKLQIWDTAGQERF 263
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ ++ I+LC GNK DL
Sbjct: 264 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILC-GNKKDL 318
>gi|198423676|ref|XP_002130334.1| PREDICTED: similar to Os03g0843100 [Ciona intestinalis]
Length = 249
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG VGK I+++ F+D + + I+ K + +W E F
Sbjct: 15 VLLIGDPGVGKTQIVNKFTRDQFDDDVKPTVGVEYVTKVIHVKGKVVCLHIWDLAGREMF 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-----ILLCIGNKVDLLP 166
SI + + AL+ V+++ + T + + +W ++ E + + +GNKVDL
Sbjct: 75 SITNAYYHGAVGALI-VYDITKVRTFENVSNWFENLARTMSEYVDSPVTMMVGNKVDLRH 133
Query: 167 GHPVHAEYRRRLLKREESS 185
V E R+ K+ S+
Sbjct: 134 QRSVPIETAMRVAKQRNST 152
>gi|47225370|emb|CAG11853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 160
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + TI+ + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIDVDGKKVKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + + +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVSRMLLGNKCDIEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L K
Sbjct: 131 VSRETGEKLAK 141
>gi|353232639|emb|CCD79994.1| putative rab 3 and [Schistosoma mansoni]
Length = 171
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 39 DSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTA 98
D+TD+ + + +LIIG+S+VGK + L R +F A S+ + TI +
Sbjct: 6 DATDQ-NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQDKRV 64
Query: 99 DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILL 156
+ +W E + + ++++++ + + +A++ WV I ++ ++
Sbjct: 65 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWVTQIKTYSWDNAQVV 124
Query: 157 CIGNKVDLLPGHPVHAEYRRRL 178
+GNK DL+ V + R L
Sbjct: 125 LVGNKCDLVDDRAVSVDRGRHL 146
>gi|70906330|gb|AAZ14934.1| putative GTPase [Coprinellus disseminatus]
Length = 177
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + LW E
Sbjct: 10 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKSVEVDDQQVT--IQLWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW--------VPSIDLQKFEILLCIGNK 161
F + V+VF++N + AL+ W P D ++F ++ +GNK
Sbjct: 68 RFQSLGVAFYRGADCCVLVFDVNSSKSFQALEGWRDEFLIQASPQGDPEEFPFVV-VGNK 126
Query: 162 VDL 164
VD+
Sbjct: 127 VDV 129
>gi|296878|emb|CAA50609.1| ras-related GTP-binding protein [Nicotiana tabacum]
Length = 200
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK ++L R + F + +S+ T+ T +W E +
Sbjct: 13 LVLLGDVGAGKSSLLLRFVKGQFIEFQESTIGAAFFSQTVAVNDATVKFEIWDTAGQERY 72
Query: 112 SIRSLP--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
SLP A ++VF++ + ++ D K WV + Q ++ GNK DLL
Sbjct: 73 --HSLPPMYYRGAAAAIIVFDITNQASFDRAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
Query: 168 HPVHAE 173
V AE
Sbjct: 131 RKVAAE 136
>gi|348515487|ref|XP_003445271.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Oreochromis
niloticus]
gi|410913473|ref|XP_003970213.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Takifugu
rubripes]
Length = 211
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 78
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ +L++ W+ + ++ I++ +GNK DL
Sbjct: 79 --RSLIPSYIRDSTIAVV-VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 167 GHPVHAEYRRR 177
V E R
Sbjct: 136 KRQVSVEAAER 146
>gi|121705630|ref|XP_001271078.1| RAB GTPase Vps21/Ypt51, putative [Aspergillus clavatus NRRL 1]
gi|119399224|gb|EAW09652.1| RAB GTPase Vps21/Ypt51, putative [Aspergillus clavatus NRRL 1]
Length = 262
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDLTND 135
Query: 168 HPVHAEYRRRLLKREESSAD 187
E + +++E S A+
Sbjct: 136 GGEATEQPQAEVEQEPSGAE 155
>gi|393216771|gb|EJD02261.1| GTP binding protein [Fomitiporia mediterranea MF3/22]
Length = 215
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
KR I+++G +VGK ++++R + F++ ++ + T+ + T + LW
Sbjct: 18 KRTKIVLLGDQSVGKTSLITRFMYDTFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 77
Query: 108 HEEFSIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E F RSL P I D A+V VF++ + + + + W+ + ++ I++ +GNK
Sbjct: 78 QERF--RSLIPSYIRDSSVAIV-VFDITNRQSFLSTRKWIDEVRSERGNDVIIVLVGNKA 134
Query: 163 DLLPGHPVHAEYRRRL 178
DL V E + L
Sbjct: 135 DLSDKREVTLEQAQEL 150
>gi|330802506|ref|XP_003289257.1| spg1, Ras superfamily GTPase [Dictyostelium purpureum]
gi|325080659|gb|EGC34205.1| spg1, Ras superfamily GTPase [Dictyostelium purpureum]
Length = 203
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + F++ D L VN TI+ + S+W EF
Sbjct: 23 MVGDSQIGKTSLMVKYVEGTFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF 80
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D+ P
Sbjct: 81 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDVFATKP 139
Query: 170 VHAEYRRRLLKREESSA 186
+ + R+ +SA
Sbjct: 140 IEEQEEITKQARKFASA 156
>gi|320164989|gb|EFW41888.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 373
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 43/198 (21%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYYTAD+ + +A + +D A+V VF+ ++ +T L + +
Sbjct: 45 WTIDNKYYTADLVVTVARHWDAVEPAHWAEAD---AVVAVFDAHEHATFTMLNDALQHVQ 101
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
+ +LLC+ R + + Q + T SS +E
Sbjct: 102 EHEPSVLLCV----------------------RSYETGRGEEAQPNTATTNASS---NEV 136
Query: 209 PSWEI--RRSCLEWCTEHRIEYIEACASNVDFDK------------CLSIDGDSQGVERL 254
P+ R + WC ++ EY+ A A D D D +G++R+
Sbjct: 137 PATSTVSREQAIAWCIKNGFEYV-AVARGAGLDANGNAIATQTADDDEDEDDDDEGIDRV 195
Query: 255 YGALSAHMWPGMVLKSGD 272
AL ++MW MV K +
Sbjct: 196 RQALFSNMWESMVRKEAN 213
>gi|2245111|emb|CAB10533.1| GTP-binding RAB1C like protein [Arabidopsis thaliana]
Length = 221
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 30 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 89
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++ +++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 90 RTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKV 149
Query: 170 VHAE 173
V E
Sbjct: 150 VSTE 153
>gi|71411989|ref|XP_808200.1| small GTP-binding protein Rab18 [Trypanosoma cruzi strain CL
Brener]
gi|70872357|gb|EAN86349.1| small GTP-binding protein Rab18, putative [Trypanosoma cruzi]
Length = 218
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-------VSLWM 104
+ ++G S VGK +++ S F+ D SS + ++ N + A+ + LW
Sbjct: 11 VFLLGDSGVGKSSLMLSFASGTFD--PDISSTIGIDFKVKNVEVMDANGVKRNVNIHLWD 68
Query: 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL------QKFEILLCI 158
E F + A+V+V+++N+ T L+ W+ D+ + + L I
Sbjct: 69 TAGQERFRTLTSSYYRGANAVVLVYDVNEPQTFHGLQRWMEEADVFCRNDDEDDAVYLLI 128
Query: 159 GNKVDLLPGHPVHAE 173
GNK+D G E
Sbjct: 129 GNKIDKCIGGSSEGE 143
>gi|410987028|ref|XP_003999810.1| PREDICTED: ras-related protein Rab-13 [Felis catus]
Length = 203
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVQRLLLGNKCDMEAKRR 130
Query: 170 VHAE 173
V E
Sbjct: 131 VRKE 134
>gi|391343813|ref|XP_003746200.1| PREDICTED: rab-like protein 2A-like [Metaseiulus occidentalis]
Length = 222
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108
R I+ +G S VGK ++ R L ++ S+ L + V W
Sbjct: 21 RVKIICLGDSAVGKSKLVERFLLDEYKSNQLSTYALTLFRHKATVDGVNVAVDFWDTAGQ 80
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIGNKVD 163
E F Q A V+VF++ T L+ W + LQ+ I +C+ NK+D
Sbjct: 81 ERFQKLHASYYHQAHACVLVFDVTRKITYKNLQKWYEELRLQRPTIPCICVANKID 136
>gi|340517201|gb|EGR47446.1| rab5-like GTPase [Trichoderma reesei QM6a]
Length = 220
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 43 RASLEKRPGI---------LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN- 92
RA RPG+ +++G S VGK +I+ R + F+ +S+ TI+
Sbjct: 4 RAPPAGRPGLNTRFAQFKLVLLGESAVGKSSIVLRFVKDQFDSFRESTIGAAFLTQTISL 63
Query: 93 TKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ T +W E + + V+V+++ ++LD K WV + Q
Sbjct: 64 DENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQAN 123
Query: 153 E--ILLCIGNKVDLLPGHP 169
E I+ GNK+DL+ P
Sbjct: 124 ENIIIALAGNKLDLVNEQP 142
>gi|340055116|emb|CCC49427.1| putative small GTP-binding protein Rab1 [Trypanosoma vivax Y486]
Length = 208
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+N + + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTESYISTIGVDFKIRTLNLEGKVIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ D+ + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDATDMESFNNVKTWLSEIDKFASENVNKLLVGNKCDLVTKKA 130
Query: 170 VHAEYRRRL 178
V + +
Sbjct: 131 VDTQMAKEF 139
>gi|169770627|ref|XP_001819783.1| vacuolar protein sorting-associated protein 21 [Aspergillus oryzae
RIB40]
gi|238486934|ref|XP_002374705.1| RAB GTPase Vps21/Ypt51, putative [Aspergillus flavus NRRL3357]
gi|83767642|dbj|BAE57781.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699584|gb|EED55923.1| RAB GTPase Vps21/Ypt51, putative [Aspergillus flavus NRRL3357]
gi|391867399|gb|EIT76645.1| GTPase Rab5/YPT51 [Aspergillus oryzae 3.042]
Length = 264
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V+++ S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|395539510|ref|XP_003771711.1| PREDICTED: ras-related protein Rab-19 [Sarcophilus harrisii]
Length = 217
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK ++ S + D+ ++ + ++ + +W E F
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGLYTDSQQNTIGVDFTVRSLEVDGKKVKMQIWDTAGQERF 79
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ A ++ ++L ST +++ HW+ I+ +++ IGNK DL
Sbjct: 80 RTITQSYYRSANAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKADL 134
>gi|449677953|ref|XP_002167019.2| PREDICTED: ras-related protein Rab-21-like [Hydra magnipapillata]
Length = 217
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G VGK +IL R F D ++ + +N ++S+W E F
Sbjct: 12 VVLLGEGCVGKTSILLRYCQDKFNDKHLTTLQAAFLNRRLNIDSKRINLSIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF---EILLCI-GNKVDL 164
++V+++ D + +K+WV +L+K EI LCI GNK+D+
Sbjct: 72 HALGPIYYRDSQGAILVYDITDEDSFQKVKNWVK--ELRKMLGEEICLCIAGNKIDM 126
>gi|307187151|gb|EFN72394.1| Ras-related protein Rab-1A [Camponotus floridanus]
Length = 208
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 16 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V++ D T + +K W+ ID + + L +GNK DL
Sbjct: 76 RTITSSYYRGAHGIIVVYDCTDQETFNNVKQWLEEIDRYACDNVNKLLVGNKCDL 130
>gi|359806422|ref|NP_001241498.1| uncharacterized protein LOC100783333 [Glycine max]
gi|255636244|gb|ACU18462.1| unknown [Glycine max]
Length = 202
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|242020978|ref|XP_002430924.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212516142|gb|EEB18186.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 206
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 20/160 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
ILIIG S VGK ++L R + F+ + L G TK T D ++LW
Sbjct: 11 ILIIGESGVGKSSLLLRFIDDKFD-----PDQPLTIGVDFKTKEMTVDGNRVKLALWDTA 65
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVD 163
E F ++V+++++ T ++ W+ +D+ + I + +GNK+D
Sbjct: 66 GQERFRTLIPSYYRDAHGAILVYDVSNYITFRKIEDWLNELDVYATKPNLIKIIVGNKID 125
Query: 164 LLPGHPVHAEYRRRLLKR------EESSADPDFCQSGISE 197
L V E +L KR E S D Q+ + E
Sbjct: 126 -LEKREVTKEEGIKLAKRHATLFIESSVKTKDGVQTAMQE 164
>gi|149239626|ref|XP_001525689.1| GTP-binding protein ypt5 [Lodderomyces elongisporus NRRL YB-4239]
gi|146451182|gb|EDK45438.1| GTP-binding protein ypt5 [Lodderomyces elongisporus NRRL YB-4239]
Length = 234
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + F+D +S+ + L TI T +W E
Sbjct: 21 LVLLGESAVGKSSIVHRFVKNTFDDMRESTIGAAFLTQSITIPETETTVKFEIWDTAGQE 80
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ + A + V+++ S+ + W+ + Q E ++ +GNK DL
Sbjct: 81 RYKSLAPMYYRNANAALCVYDITSSSSFTKAQDWISELRKQAPEGIVIALVGNKTDL 137
>gi|303750|dbj|BAA02116.1| GTP-binding protein [Pisum sativum]
gi|738940|prf||2001457H GTP-binding protein
Length = 202
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLADNKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|342319743|gb|EGU11690.1| Rab family GTP-binding protein, putative [Rhodotorula glutinis ATCC
204091]
Length = 714
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTI-NTKYYTADVSLWMAHLH 108
++I+GS VGK +++ R + F + S+ + L TI +TK + LW
Sbjct: 246 VVIVGSQGVGKTSLIHRSTTGKFNHSLSSTMGAGFLTKKLTIADTKVH---FQLWDTAGG 302
Query: 109 EEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL 165
E F S+ L L A ++V+++ D S+L LK W+ + E I+L +G K DL
Sbjct: 303 ERFRSLAKLYYRGALAA-ILVYDVTDESSLQDLKFWLQELRKNMSEDLIILVVGTKADLA 361
Query: 166 PGHPV 170
+P
Sbjct: 362 GSYPT 366
>gi|381210507|ref|ZP_09917578.1| GTP-binding protein YsxC [Lentibacillus sp. Grbi]
Length = 193
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 26/115 (22%)
Query: 50 PGILIIGSSNVGKRTILSRLLSVN--FEDASDSSSELLVNGWTINTKYYTADV------- 100
P I + G SNVGK + ++RL+ +S +N + IN K+Y DV
Sbjct: 24 PEIALAGRSNVGKSSFINRLIQRKNLARTSSKPGKTQTINFYKINNKFYFTDVPGYGYAK 83
Query: 101 ------SLWMAHLHEEFSIRSLPISDQLTALVMVFNL------NDLSTLDALKHW 143
W A + E F++R D L A VM+ ++ +D+ D LK++
Sbjct: 84 VSKKEREKWGAMMEEYFAMR-----DTLKACVMITDVRHEPTEDDVLMYDFLKYY 133
>gi|289739869|gb|ADD18682.1| Rab protein 1 [Glossina morsitans morsitans]
Length = 205
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDNKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AEY +L
Sbjct: 134 VDHTTAAEYANQL 146
>gi|157128524|ref|XP_001661468.1| low-Mr GTP-binding protein Rab31, putative [Aedes aegypti]
gi|108872544|gb|EAT36769.1| AAEL011171-PA [Aedes aegypti]
Length = 242
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++GS VGK +++ R +S + + +N + + + +W E F
Sbjct: 8 IVVLGSQGVGKTSLVVRYVSNVYTKEISPTIGASFFTCKVNLEDFKVKMQVWDTAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L ++ +K WV + ++Q+ +L +GNK+DL
Sbjct: 68 KAMAPLYYRNANAALLVFDLTQYNSFVEIKSWVQELQRNVQEPMVLSLVGNKLDL----- 122
Query: 170 VHAEYRRRLLKREESS 185
+R + REE++
Sbjct: 123 ----EEKRAVSREEAA 134
>gi|440793018|gb|ELR14219.1| GTPbinding protein [Acanthamoeba castellanii str. Neff]
Length = 195
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK +I++R + F++ ++ + T+ + T + LW E F
Sbjct: 12 LVFLGDQSVGKTSIITRFMYDTFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 71
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ + +T WV I ++ IL+ +GNK DL
Sbjct: 72 --RSLIPSYIRDSSVAIV-VYDITNRTTFLDTARWVEDIRAERGNDVILMLVGNKTDLAD 128
Query: 167 GHPVHAE 173
V AE
Sbjct: 129 KRCVSAE 135
>gi|41152205|ref|NP_958486.1| ras-related protein Rab-13 [Danio rerio]
gi|31419201|gb|AAH53195.1| RAB13, member RAS oncogene family [Danio rerio]
Length = 200
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + TI + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIEVEGKKVKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + + +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSYENIQNWMKSIKENASAGVSRMLLGNKCDIEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L K
Sbjct: 131 VSKETGEKLAK 141
>gi|358390924|gb|EHK40329.1| hypothetical protein TRIATDRAFT_132347 [Trichoderma atroviride IMI
206040]
Length = 220
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 43 RASLEKRPGI---------LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN- 92
RA RPG+ +++G S VGK +I+ R + F+ +S+ TI+
Sbjct: 4 RAPPAGRPGLNTRFAQFKLVLLGESAVGKSSIVLRFVKDQFDSFRESTIGAAFLTQTISL 63
Query: 93 TKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ T +W E + + V+V+++ ++LD K WV + Q
Sbjct: 64 DENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQAN 123
Query: 153 E--ILLCIGNKVDLLPGHP 169
E I+ GNK+DL+ P
Sbjct: 124 ENIIIALAGNKLDLVNEQP 142
>gi|296413144|ref|XP_002836276.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630089|emb|CAZ80467.1| unnamed protein product [Tuber melanosporum]
Length = 201
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELEAKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ + +VF++ D+ + + +K W+ ID E + L +GNK D+
Sbjct: 71 RTITSSYYRGAHGICVVFDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDI 125
>gi|241950447|ref|XP_002417946.1| RAB family GTPase, putative [Candida dubliniensis CD36]
gi|223641284|emb|CAX45664.1| RAB family GTPase, putative [Candida dubliniensis CD36]
Length = 221
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + F+D +S+ + L TI T +W E
Sbjct: 15 LVLLGESAVGKSSIVHRFVKNTFDDMRESTIGAAFLTQTITIPESETTIKFEIWDTAGQE 74
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ + A + V+++ S+ + W+ + Q E ++ +GNK DL
Sbjct: 75 RYKSLAPMYYRNANAALCVYDITSRSSFQKAQDWIKELKRQAPEGIVIALVGNKSDL 131
>gi|167391072|ref|XP_001739628.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165896634|gb|EDR23985.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 206
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D ++ + T+ + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDTHIATIGVDFKIKTVQIDGKNVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++V+++ DL T ++ W+ I+ E I L IGNK DL
Sbjct: 71 RTITSSYYRGAQGIIVVYSVIDLQTFQNVRQWLQEIERYASETVIKLLIGNKCDLEDERA 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VTVEQGQEL 139
>gi|303736|dbj|BAA02109.1| GTP-binding protein [Pisum sativum]
gi|738934|prf||2001457B GTP-binding protein
Length = 222
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVN--FEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK ILSR F+ S E TIN K A + W E
Sbjct: 12 VVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTKTVTINGKLIKAQI--WDTAGQE 69
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
+ ++ S L A+ +V+++ T D + WV + +++ IGNK DL+
Sbjct: 70 RYRAVTSAYYRGALGAM-LVYDITKRQTFDHVARWVEELRSHADGSIVIMLIGNKGDLVD 128
Query: 167 GHPVHAE 173
V E
Sbjct: 129 QRGVQTE 135
>gi|145496208|ref|XP_001434095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833796|emb|CAI39360.1| rab_A46 [Paramecium tetraurelia]
gi|124401218|emb|CAK66698.1| unnamed protein product [Paramecium tetraurelia]
Length = 197
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G SNVGK +IL R F + + L + K + +W E+F
Sbjct: 10 IILLGDSNVGKSSILKRYSENTFSEQQAPTIGLAFYKKVVERKNIKITLEIWDTAGQEKF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVD 163
+ A+++ F++++ TL+ K W+ ID L + +GNK D
Sbjct: 70 KKIAPIYYRNAQAVLICFDVSNRDTLEGAKRWLEEIDKYLDPDCVKFLVGNKQD 123
>gi|384485106|gb|EIE77286.1| GTP-binding protein ypt1 [Rhizopus delemar RA 99-880]
Length = 207
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 15 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + +K W+ ID E + L +GNK DL
Sbjct: 75 RTITSSYYRGAHGIIVVYDVTDEDSFQHVKQWMQEIDRYAAEGVNKLLVGNKSDLTDKKA 134
Query: 170 VHAE 173
V E
Sbjct: 135 VSTE 138
>gi|308491869|ref|XP_003108125.1| CRE-RAB-19 protein [Caenorhabditis remanei]
gi|308248973|gb|EFO92925.1| CRE-RAB-19 protein [Caenorhabditis remanei]
Length = 225
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G VGK ++ R S NF D ++ + T+N + +W E F
Sbjct: 13 IVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLNVDGKRVKLQIWDTGGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ +V+ +++ + +L+ W+ D+ KF + L IG K DL
Sbjct: 73 RTITQSYYRSANGIVLCYDITCKQSFGSLQRWID--DVSKFAAPNVVKLLIGTKCDLEDQ 130
Query: 168 HPVHAE 173
+ E
Sbjct: 131 RSIETE 136
>gi|1370166|emb|CAA98160.1| RAB1C [Lotus japonicus]
Length = 202
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTENKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|358248394|ref|NP_001239874.1| uncharacterized protein LOC100796206 [Glycine max]
gi|414832|gb|AAA34003.1| Rab7p [Glycine max]
Length = 201
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDLVDNKV 130
Query: 170 VHA 172
V +
Sbjct: 131 VDS 133
>gi|219879825|gb|ABW35313.2| Rab1A [Guillardia theta]
gi|428167960|gb|EKX36911.1| hypothetical protein GUITHDRAFT_97443 [Guillardia theta CCMP2712]
Length = 530
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
+ D S + I+++G S+VGK ++L+R NF ++ S+ + T++ K
Sbjct: 303 NADEGSYDALLKIVLVGDSDVGKTSLLTRFSDDNFSNSFISTIGVDFRWRTMSIKDKNIK 362
Query: 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-----I 154
+ +W E F + +V+V+++ + + D + W+ I KF
Sbjct: 363 LQIWDTAGQERFRTITSAYYRGADGIVVVYDITNKESFDHVDMWMKEI--HKFTDDNHVR 420
Query: 155 LLCIGNKVDL-----LPGHPVHAEYRRRLLKREESSA 186
+L +GNK D+ +P +R +K E+SA
Sbjct: 421 VLVVGNKCDMEEKREIPTSLAREYCNQRGMKVVETSA 457
>gi|401427908|ref|XP_003878437.1| putative small GTP-binding protein Rab18 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494685|emb|CBZ29988.1| putative small GTP-binding protein Rab18 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 217
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSEL--------LVNGW 89
M ST A +K +L+IG S VGK ++L + F++ S+ + +V+
Sbjct: 1 MGSTTGA--DKTIKVLLIGDSGVGKSSLLLSFTTGAFDENISSTIGIDFKVKKVDVVDAH 58
Query: 90 TINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID- 148
T T ++ LW E F + A+V+V+++ND + LK W+ +
Sbjct: 59 TGGKT--TVNLQLWDTAGQERFRTLTSSYYRGAQAVVLVYDVNDPQSFHGLKKWLDEANS 116
Query: 149 -LQKFE------ILLCIGNKVDLLP 166
++ E + L IGNK DL P
Sbjct: 117 YCRRDEAESSSMVFLLIGNKTDLCP 141
>gi|291225089|ref|XP_002732535.1| PREDICTED: ras-related protein Rab-4B-like [Saccoglossus
kowalevskii]
Length = 210
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK IL + + F+ S+ + + +N + + +W E F
Sbjct: 11 FLVIGSAGTGKSCILHQFIESKFKQESNHTIGVEFGSKVVNVGGKSVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ ++ I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALANWLADARTLASPNIVIILC-GNKKDL 125
>gi|149043179|gb|EDL96711.1| RAB4A, member RAS oncogene family [Rattus norvegicus]
Length = 158
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|123412712|ref|XP_001304133.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121885564|gb|EAX91203.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 191
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWM 104
S E +P I+ IG S VGK +I+ + FE + ++ + T LW
Sbjct: 3 SNETQPRIIFIGDSGVGKTSIIHYAKNGFFESRTMTTIGAGITQMETKVGNETVKYQLWD 62
Query: 105 AHLHEEFSIRSLPIS-DQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGN 160
E + +PI TA ++VF++ D T L W+ + +K I+L +GN
Sbjct: 63 TAGQEMYR-NIVPIYFKGATAAIIVFSVTDAETFRHLDGWIKQLQDHASEKVGIVL-VGN 120
Query: 161 KVDLLPGHPVHAE 173
K+D P H V E
Sbjct: 121 KID-SPDHKVEIE 132
>gi|444726779|gb|ELW67299.1| Ras-related protein Rab-19 [Tupaia chinensis]
Length = 217
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLH 108
I++IG SN+G+ ++ S + +A ++ +L V IN K + +W
Sbjct: 19 NIILIGDSNMGETCVVQHFKSKVYTEAQQNTIGVDLTVCSLEINGK--RVKMQVWDTASQ 76
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDL 164
E FS + A ++ ++L T +++ HW+ I +K+ +++ +GNK DL
Sbjct: 77 ERFSTITQSYYRSAHAAIIAYDLARRFTFESVPHWIHEI--EKYSAANLVIMLMGNKCDL 134
Query: 165 LPGHPV 170
P+
Sbjct: 135 WEKRPI 140
>gi|393213286|gb|EJC98783.1| ras-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 209
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 31/144 (21%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +++ R + F+D +S TI + T VSL
Sbjct: 9 LVLLGESAVGKSSLVLRFVKDQFDDYRES---------TIGAAFLTQTVSLEDGSTVKFE 59
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCI 158
W E + + V+V+++ ++L+ K W+ + Q I LC
Sbjct: 60 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLEKAKTWIRELQRQADPSIVIALC- 118
Query: 159 GNKVDLLPGHPVHAEYRRRLLKRE 182
GNKVDL E RR++L+ E
Sbjct: 119 GNKVDL--------EERRQVLQEE 134
>gi|356508969|ref|XP_003523225.1| PREDICTED: ras-related protein RABC1-like [Glycine max]
Length = 207
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
MDS+ E +L+IG S VGK ++L S +FED S + G KY T
Sbjct: 1 MDSSSTQEFEYLFKLLMIGDSGVGKSSLLLCFTSDSFEDLSPTI------GVDFKVKYLT 54
Query: 98 AD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQK 151
+ +++W E F + ++M +++ T L W IDL
Sbjct: 55 MEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMAYDVTRRETFTNLSEIWAKEIDLYS 114
Query: 152 FE---ILLCIGNKVD 163
I + +GNKVD
Sbjct: 115 TNPECIKMLVGNKVD 129
>gi|50082729|gb|AAT70059.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNVKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DL + E
Sbjct: 114 ISEGCVKILC--GNKLDLSNERAITTE 138
>gi|171694842|ref|XP_001912345.1| hypothetical protein [Podospora anserina S mat+]
gi|170947663|emb|CAP59825.1| unnamed protein product [Podospora anserina S mat+]
Length = 219
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +I+ R + F+ +S TI + T +SL
Sbjct: 21 LVLLGESAVGKSSIVLRFVKDQFDSYRES---------TIGAAFLTQTISLDENTTVKFE 71
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ ++LD K WV + Q E I+ G
Sbjct: 72 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIIIALAG 131
Query: 160 NKVDLLPGHP 169
NK+DL+ P
Sbjct: 132 NKLDLVTEQP 141
>gi|119620329|gb|EAW99923.1| RAB1A, member RAS oncogene family, isoform CRA_f [Homo sapiens]
Length = 257
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 66 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 125
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 126 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 180
>gi|384262939|ref|YP_005418127.1| Leucine-rich repeat [Rhodospirillum photometricum DSM 122]
gi|378404041|emb|CCG09157.1| Leucine-rich repeat [Rhodospirillum photometricum DSM 122]
Length = 756
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 35 RQEMDSTDRASLEKRPG-ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT 93
R + +R ++ R +L++G+ VGK + +RLL FED +DS+ ++V G+ +
Sbjct: 90 RAHLRDLERGAVRMRDAKLLVLGNGRVGKTQLCNRLLGAGFEDNADSTHGIVVQGFDLAG 149
Query: 94 KYYT--ADVSLW 103
+ T A + LW
Sbjct: 150 EAGTEPARIQLW 161
>gi|329185063|ref|NP_001002129.2| ras-related protein-like [Danio rerio]
gi|66911050|gb|AAH97013.1| Zgc:86773 protein [Danio rerio]
Length = 201
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK IL R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCILLRFADDTYTESFISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESYNNVKQWLKEIDRYASENVNKLLVGNKCDL 125
>gi|125985004|ref|XP_001356266.1| GA22174 [Drosophila pseudoobscura pseudoobscura]
gi|195164658|ref|XP_002023163.1| GL21209 [Drosophila persimilis]
gi|54644588|gb|EAL33329.1| GA22174 [Drosophila pseudoobscura pseudoobscura]
gi|194105248|gb|EDW27291.1| GL21209 [Drosophila persimilis]
Length = 259
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G VGK +L+R +S +E+ + + E + ++ + YT + +W E
Sbjct: 15 VVILGDGGVGKSALLTRFVSNRYEENNFHTIGVEFMNKDIVVDGEQYT--LQIWDTAGQE 72
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW------VPSIDLQKFEILLCIGNKVD 163
F P ++ + L+D +L L W ++ KF ++ +GNK D
Sbjct: 73 RFRALRTPFYRGSDICLLCYALDDRDSLRGLGLWRNEFLTYADVEADKFPFIV-VGNKND 131
Query: 164 LLP 166
+LP
Sbjct: 132 ILP 134
>gi|260797685|ref|XP_002593832.1| hypothetical protein BRAFLDRAFT_214835 [Branchiostoma floridae]
gi|229279062|gb|EEN49843.1| hypothetical protein BRAFLDRAFT_214835 [Branchiostoma floridae]
Length = 163
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G S VGK T + R+ +++ S+ + + T+ K + LW E F
Sbjct: 4 VVFVGDSGVGKSTFIYRVCHDDYKATFSSTIGVDFHLKTVVAKNQKITMQLWDTAGQERF 63
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH- 168
+ + ++++++++ T +++ W+ SI E +L+ +GNKVDLL +
Sbjct: 64 RSITKSYFRKADGVIIMYDVSTEPTFTSVRSWMESIQEGTSEDTVLMLVGNKVDLLLEND 123
Query: 169 --PVHAEYRRRLLKREESSADPDFCQSGISETEG 200
V + +RL + ++ ++G++ TE
Sbjct: 124 LSGVKSHVAKRLAQEYDALFFESSAKTGVNITEA 157
>gi|195113911|ref|XP_002001511.1| GI10837 [Drosophila mojavensis]
gi|193918105|gb|EDW16972.1| GI10837 [Drosophila mojavensis]
Length = 205
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AEY +L
Sbjct: 134 VDHTTAAEYAHQL 146
>gi|224139832|ref|XP_002323298.1| predicted protein [Populus trichocarpa]
gi|222867928|gb|EEF05059.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +L+R F S ++ + T+ T +W E +
Sbjct: 17 IVLIGDSAVGKSQLLARFARNEFTVDSKATIGVEFQTKTLAMHNKTVKAQIWDTAGQERY 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ ++V+++ + D + W+ + K I++ IGNK DL
Sbjct: 77 RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKSIIIMLIGNKCDLGSLRA 136
Query: 170 VHAEYRRRLLKRE 182
V AE + +RE
Sbjct: 137 VPAEDAKEFAQRE 149
>gi|344228933|gb|EGV60819.1| ras-domain-containing protein [Candida tenuis ATCC 10573]
Length = 203
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G S VGK +L R + F + ++ + TI +K + +W E F
Sbjct: 16 LLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKKIKLQVWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +V+++++ D + + + +W ++ E + +GNK D G
Sbjct: 76 RTITTAYYRGAMGIVLIYDVTDARSFENVDNWYQTVTQHANEDAQIFLVGNKCDDSEGRQ 135
Query: 170 VHAEYRRRLLKR 181
V E + L R
Sbjct: 136 VSTEQGQELAAR 147
>gi|224129738|ref|XP_002328790.1| predicted protein [Populus trichocarpa]
gi|222839088|gb|EEE77439.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKV 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|303734|dbj|BAA02118.1| GTP-binding protein [Pisum sativum]
gi|452359|emb|CAA82707.1| guanine nucleotide regulatory protein [Vicia faba]
gi|738942|prf||2001457K GTP-binding protein
gi|1098293|prf||2115367A small GTP-binding protein
Length = 202
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTENRA 130
Query: 170 VHAE 173
V E
Sbjct: 131 VPYE 134
>gi|384250683|gb|EIE24162.1| hypothetical protein COCSUDRAFT_65775 [Coccomyxa subellipsoidea
C-169]
Length = 163
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 239 DKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270
D L +DGD QG++R+ AL AH WPG+ LK+
Sbjct: 12 DHSLQLDGDPQGLKRVLEALEAHTWPGLHLKA 43
>gi|353244337|emb|CCA75747.1| related to YPT-1 GTP-binding protein ypt1 [Piriformospora indica
DSM 11827]
Length = 227
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 35 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 94
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D T +K W+ ID E + L +GNK DL
Sbjct: 95 RTITSSYYRGAHGIIVVYDVTDTDTFTNVKQWLQEIDRYASEGVNKLLVGNKSDL 149
>gi|343470855|emb|CCD16567.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 208
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+N + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTESYISTIGVDFKIRTLNLDGKVIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ D+ + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDTTDMESFNNVKSWLSEIDKFASESVNKLLVGNKCDLVTKKA 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|328768042|gb|EGF78089.1| hypothetical protein BATDEDRAFT_90991 [Batrachochytrium
dendrobatidis JAM81]
Length = 241
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 49 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 108
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D T + +K W+ ID E + L +GNK DL
Sbjct: 109 RTITSSYYRGAHGIIVVYDVTDQETFNNVKQWLQEIDRFASEGVHKLLVGNKSDL 163
>gi|398017462|ref|XP_003861918.1| small GTP-binding protein Rab1, putative [Leishmania donovani]
gi|322500146|emb|CBZ35221.1| small GTP-binding protein Rab1, putative [Leishmania donovani]
Length = 200
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+N + + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLESKVIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ D+ + + +K W+ I+ E + + +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIEKYASENVNKILVGNKCDLVTKKA 130
Query: 170 VHAEYRR 176
V + +
Sbjct: 131 VDTQMAK 137
>gi|320165409|gb|EFW42308.1| Rab31 protein [Capsaspora owczarzaki ATCC 30864]
Length = 201
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+ ++G + VGK +++ R ++ +F + S+S+ T+ + T +W E++
Sbjct: 11 LCLLGDAGVGKSSLVLRFVADSFNENSESTIGASFMSKTLIVEDQTFKYQIWDTAGQEKY 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF---EILLCI-GNKVDL 164
+ A ++V+ + + +ALKHWV +L++F I+L I GNK DL
Sbjct: 71 RGLAPMYYRNAAAAIIVYEITRKQSFEALKHWVK--ELRQFGPSNIILAIAGNKSDL 125
>gi|336275989|ref|XP_003352748.1| hypothetical protein SMAC_01582 [Sordaria macrospora k-hell]
gi|380094637|emb|CCC08018.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 220
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 43 RASLEKRPG---------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN- 92
R RPG ++++G S VGK +I+ R + F+ +S+ TI+
Sbjct: 4 RGPPGARPGMGNRFAQFKLVLLGESAVGKSSIVLRFVKDQFDSYRESTIGAAFLTQTISL 63
Query: 93 TKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152
+ T +W E + + V+V+++ ++LD K WV + Q
Sbjct: 64 DENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQAN 123
Query: 153 E--ILLCIGNKVDLLPGHP 169
E I+ GNK+DL+ P
Sbjct: 124 ENIIIALAGNKLDLVQEQP 142
>gi|170037970|ref|XP_001846827.1| low-Mr GTP-binding protein Rab31 [Culex quinquefasciatus]
gi|167881359|gb|EDS44742.1| low-Mr GTP-binding protein Rab31 [Culex quinquefasciatus]
Length = 240
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++GS VGK +++ R +S + + +N + + + +W E F
Sbjct: 8 IVVLGSQGVGKTSLVVRYVSNVYTKEVSPTIGASFFTCKVNLEDFKVKMQVWDTAGQERF 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ A ++VF+L ++ +K WV + ++Q+ +L +GNK+DL
Sbjct: 68 KAMAPLYYRNANAALLVFDLTQYNSFVEIKTWVQELQRNVQEPMVLSLVGNKLDLEA--- 124
Query: 170 VHAEYRRRLLKREESS 185
+R + REE++
Sbjct: 125 ------KRAVSREEAA 134
>gi|112005093|gb|ABH85387.1| putative GTP binding protein [Beta vulgaris]
Length = 202
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++V+++ D + D +K W+ ID + + + +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQQSFDNVKQWLNEIDRYASDNVVKILVGNKSDLTSNKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|71745492|ref|XP_827376.1| small GTPase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70831541|gb|EAN77046.1| small GTPase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74834804|emb|CAJ30027.1| rab7 homologue [Trypanosoma brucei brucei]
gi|261331581|emb|CBH14575.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 220
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I+I+G S VGK ++ + ++ NF++ ++ ++ L I+ K T + +W E
Sbjct: 10 IIILGDSGVGKTALVHQYVNKNFDNRYKATIGADFLTRDVEIDGKLVT--LQIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDL 164
F A V+VF+L D + + W+ Q + E +L IGNK DL
Sbjct: 68 RFQSLGSAFYRGADACVLVFDLTDSESFSHINSWLEEFRAQAGQRECVL-IGNKSDL 123
>gi|389593257|ref|XP_003721882.1| putative small GTP-binding protein Rab1 [Leishmania major strain
Friedlin]
gi|321438384|emb|CBZ12137.1| putative small GTP-binding protein Rab1 [Leishmania major strain
Friedlin]
Length = 200
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+N + + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLESKVIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ D+ + + +K W+ I+ E + + +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIEKYASENVNKILVGNKCDLVTKKA 130
Query: 170 VHAEYRR 176
V + +
Sbjct: 131 VDTQMAK 137
>gi|50082727|gb|AAT70058.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+ RL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGAGKTSIIYRLVGSNFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++VF++ D +L+ + W P
Sbjct: 55 QIDLKSVKLHIWELPRAENAKSVTSIYMKN-CSCVIVVFDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DL + E
Sbjct: 114 IPEGCVKILC--GNKLDLSNERAITTE 138
>gi|384485982|gb|EIE78162.1| hypothetical protein RO3G_02866 [Rhizopus delemar RA 99-880]
Length = 203
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSS----ELLVNGWTINTKYYTADVSLWMAHL 107
+L+IG+SNVGK ++L R F + S+ + V+ +N K Y +++W
Sbjct: 10 LLLIGNSNVGKSSLLLRFTDDTFLPQEEVSATIGVDFKVSMMDVNDKTY--KLTIWDTAG 67
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDL 164
E F + +++V+++++ T DAL +W ++ + + +GNKVD
Sbjct: 68 QERFRTLTSSYYRGAQGVILVYDVSNRETFDALNNWWNEVNTYCSSPDVVKMIVGNKVDK 127
Query: 165 LPGHPVHAE----YRRRL 178
V E + R+L
Sbjct: 128 ESSRVVSYEEGLNFARKL 145
>gi|212529382|ref|XP_002144848.1| Rab small monomeric GTPase Rab7, putative [Talaromyces marneffei
ATCC 18224]
gi|210074246|gb|EEA28333.1| Rab small monomeric GTPase Rab7, putative [Talaromyces marneffei
ATCC 18224]
Length = 206
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 27/180 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + LW E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTKEVLVDDRLVT--MQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
F + V+V+++N+ + +AL W D + F ++ IGNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFEALDSWRDEFLIQASPRDPESFPFVV-IGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS----ETEGSSLLGDEEPSWEIRRSCL 218
D+ E +R++ + + FCQS S ET L E+ I RS L
Sbjct: 128 DV--------EENKRMISSKRAMT---FCQSKGSLPYFETSAKEALNVEQAFEVIARSAL 176
>gi|89258451|gb|ABD65449.1| Rab-like3 [Suberites domuncula]
Length = 212
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G VGK ++ RL +F++ +++ + + T +S+W E F
Sbjct: 13 VVLLGELGVGKTSLFRRLKDNSFDEYQTATTGIDSCSKVVKIDGSTVMLSIWDTAGVERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF---EILLCIGNKVDLLP 166
+ A V V++++D S+L L W+ D Q F + +GNKVD+ P
Sbjct: 73 RTLTRNYYRNAHAAVFVYSVSDASSLHYLAQWIK--DAQNFAPSATRMLLGNKVDIEP 128
>gi|147900245|ref|NP_001090134.1| ras-related protein Rab-19 [Xenopus laevis]
gi|123898987|sp|Q32NQ0.1|RAB19_XENLA RecName: Full=Ras-related protein Rab-19
gi|80476372|gb|AAI08533.1| MGC130981 protein [Xenopus laevis]
Length = 213
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 43 RASLEKRP-----GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
R SLE P I++IG SNVGK ++ R S F D ++ + ++N
Sbjct: 4 RGSLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKK 63
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---- 153
V +W E F + ++ +++ + +++ HW+ + K+
Sbjct: 64 VKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWI--YEAGKYGAANL 121
Query: 154 ILLCIGNKVDL 164
+L+ +GNK DL
Sbjct: 122 MLMLMGNKSDL 132
>gi|195399732|ref|XP_002058473.1| GJ14443 [Drosophila virilis]
gi|194142033|gb|EDW58441.1| GJ14443 [Drosophila virilis]
Length = 205
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AEY +L
Sbjct: 134 VDHTTAAEYAHQL 146
>gi|85115075|ref|XP_964811.1| Rab5-like protein ypt5 [Neurospora crassa OR74A]
gi|28926605|gb|EAA35575.1| Rab5-like protein ypt5 [Neurospora crassa OR74A]
gi|38636468|emb|CAE82003.1| probable GTP-binding protein ypt5 [Neurospora crassa]
gi|350295957|gb|EGZ76934.1| putative GTP-binding protein ypt5 [Neurospora tetrasperma FGSC
2509]
Length = 220
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 43 RASLEKRPG---------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTI-- 91
R RPG ++++G S VGK +I+ R + F+ +S+ TI
Sbjct: 4 RGPPGARPGMGNRFAQFKLVLLGESAVGKSSIVLRFVKDQFDSYRESTIGAAFLTQTIAL 63
Query: 92 --NTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL 149
NT T +W E + + V+V+++ ++LD K WV +
Sbjct: 64 DENT---TVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQR 120
Query: 150 QKFE--ILLCIGNKVDLLPGHP 169
Q E I+ GNK+DL+ P
Sbjct: 121 QANENIIIALAGNKLDLVQEQP 142
>gi|21311975|ref|NP_080953.1| ras-related protein Rab-13 [Mus musculus]
gi|46577121|sp|Q9DD03.1|RAB13_MOUSE RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|12832187|dbj|BAB22000.1| unnamed protein product [Mus musculus]
gi|20070865|gb|AAH27214.1| RAB13, member RAS oncogene family [Mus musculus]
gi|148683212|gb|EDL15159.1| RAB13, member RAS oncogene family [Mus musculus]
Length = 202
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQ 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQREQAEKLAR 141
>gi|366997238|ref|XP_003678381.1| hypothetical protein NCAS_0J00630 [Naumovozyma castellii CBS 4309]
gi|342304253|emb|CCC72042.1| hypothetical protein NCAS_0J00630 [Naumovozyma castellii CBS 4309]
Length = 218
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + F + ++ + T++ + + LW E F
Sbjct: 29 ILLIGDSGVGKSCLLVRFVENKFNPSFITTIGIDFKIKTLDIQGRKIKLQLWDTAGQERF 88
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ +++V+++ D T ++ W +++ E LL +GNK DL
Sbjct: 89 RTITTAYYRGAMGIILVYDVTDERTFQNIRQWYSTVNEHANEQVQLLLVGNKSDL 143
>gi|321473003|gb|EFX83971.1| hypothetical protein DAPPUDRAFT_223052 [Daphnia pulex]
Length = 203
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYSESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLQEIDRYACENVNKLLVGNKCDL 125
>gi|18422766|ref|NP_568678.1| RAB GTPase-1A [Arabidopsis thaliana]
gi|297794499|ref|XP_002865134.1| hypothetical protein ARALYDRAFT_494258 [Arabidopsis lyrata subsp.
lyrata]
gi|75172011|sp|Q9FPJ4.1|RAD2B_ARATH RecName: Full=Ras-related protein RABD2b; Short=AtRABD2b; AltName:
Full=Ras-related protein Rab1A; Short=AtRab1A
gi|11762128|gb|AAG40342.1|AF324990_1 AT5g47200 [Arabidopsis thaliana]
gi|19347885|gb|AAL85999.1| putative ras-related small GTP-binding protein [Arabidopsis
thaliana]
gi|21281060|gb|AAM45061.1| putative ras-related small GTP-binding protein [Arabidopsis
thaliana]
gi|21553520|gb|AAM62613.1| ras-related small GTP-binding protein-like protein [Arabidopsis
thaliana]
gi|71143080|gb|AAZ23931.1| At5g47200 [Arabidopsis thaliana]
gi|107738243|gb|ABF83667.1| At5g47200 [Arabidopsis thaliana]
gi|110742473|dbj|BAE99155.1| ras-related small GTP-binding protein-like [Arabidopsis thaliana]
gi|297310969|gb|EFH41393.1| hypothetical protein ARALYDRAFT_494258 [Arabidopsis lyrata subsp.
lyrata]
gi|332008100|gb|AED95483.1| RAB GTPase-1A [Arabidopsis thaliana]
Length = 202
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++ +++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTSQKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSTE 134
>gi|25151658|ref|NP_741092.1| Protein RAB-18, isoform b [Caenorhabditis elegans]
gi|75017365|sp|Q8MXS1.1|RAB18_CAEEL RecName: Full=Ras-related protein Rab-18
gi|351018339|emb|CCD62283.1| Protein RAB-18, isoform b [Caenorhabditis elegans]
Length = 203
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILIIG S VGK +++ R + F E A+ + V I+ +++W E
Sbjct: 14 ILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNR--VKLAIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLP 166
F + ++ V+++ S+ + L HW+ +D I + + NK+D +P
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQEVDTYCTNDNIIKMMVANKID-MP 130
Query: 167 GHPVHAEYRRRLLKREES 184
V E + KR +
Sbjct: 131 NRVVTREEGLKFAKRHRT 148
>gi|440299584|gb|ELP92136.1| hypothetical protein EIN_380930 [Entamoeba invadens IP1]
Length = 197
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G S+VGK ++ R +S F+D +S + + V LW E F
Sbjct: 9 MLLVGESSVGKTSLTQRYISNTFDDIFLASVGVDFKFKEVTYNNEPLRVQLWDTAGQERF 68
Query: 112 SIRSLPISDQLTALV--MVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDL 164
RS+ S A V +VF+LN+ T +W+ I + +E ++ +GNK DL
Sbjct: 69 --RSIGKSYYRNADVALVVFDLNNFLTFQKASYWLDEIRSEGYENTVVIVGNKNDL 122
>gi|395331578|gb|EJF63959.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 277
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + + SLW EF
Sbjct: 38 MLGDSQIGKTSLMVKYVEGHFDE--DYIQTLGVNFMEKTISVRRTSITFSLWDLGGQREF 95
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 96 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDTFSTFP 154
>gi|123429816|ref|XP_001307759.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121889406|gb|EAX94829.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 191
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSL 102
K+ ++++G S VGK T++ R +S + + D + L G I TK YT D ++
Sbjct: 2 KQCKVILLGDSCVGKTTLIHRYISGEYRN--DFKATL---GTNITTKIYTKDDKDIEAAI 56
Query: 103 WMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEI 154
W E F SI S+ D A ++VF+ L T L +W + +L F
Sbjct: 57 WDTAGTERFKSISSIHYRDA-DACILVFDYTSLETFHNLSNWRQDVLSSAGIKNLDSFPF 115
Query: 155 LLCIGNKVD 163
++ GNK D
Sbjct: 116 IV-AGNKCD 123
>gi|406700563|gb|EKD03729.1| small monomeric GTPase [Trichosporon asahii var. asahii CBS 8904]
Length = 191
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTAD 99
DR ++ + G+ +G + +GK +++ + + +F++ D L VN I +
Sbjct: 24 DRNAIVLKVGM--VGDAQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKAITIRNTEIT 79
Query: 100 VSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLC 157
S+W EF + LP +S+ A++ +F+L STL+++K W + K I +
Sbjct: 80 FSIWDLGGQREF-VSMLPLVSNDAVAILFMFDLTRKSTLNSVKEWYRQARGFNKTAIPVL 138
Query: 158 IGNKVDLLPGHP 169
IG K D+ +P
Sbjct: 139 IGTKYDIFASYP 150
>gi|307198018|gb|EFN79078.1| Ras-related protein Rab-1A [Harpegnathos saltator]
Length = 206
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V++ D T + +K W+ ID + + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQETFNNVKQWLEEIDRYACDNVNKLLVGNKCDL 128
>gi|119491781|ref|XP_001263385.1| RAB GTPase Vps21/Ypt51, putative [Neosartorya fischeri NRRL 181]
gi|119411545|gb|EAW21488.1| RAB GTPase Vps21/Ypt51, putative [Neosartorya fischeri NRRL 181]
Length = 262
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDLTSD 135
Query: 168 HPVHAEYRRRLLKREESSAD 187
AE + + E S A+
Sbjct: 136 GGEAAEQPQTNDEHESSGAE 155
>gi|340367925|ref|XP_003382503.1| PREDICTED: ras-related protein Rab-8A-like [Amphimedon
queenslandica]
Length = 201
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFED--ASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILI+G+ +VGK L+RL + F AS + I+ K T + W E
Sbjct: 11 ILIVGNPHVGKSCFLTRLCTNTFTTKYASTIGVDFYSRALVIDDK--TVALQFWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKF-EILLCIGNKVDLLP 166
F + +++++++ T A++ W+ S+ ++ K LL +GNKVDL
Sbjct: 69 RFQSVTKAYYRGADGVILMYDITSEETFIAVRKWINSMQDNMDKLPACLLLVGNKVDL-- 126
Query: 167 GHPVHAEYRRRLLKREESSA 186
H E R L + E+ A
Sbjct: 127 ---EHNEKREVLSETGETFA 143
>gi|170579409|ref|XP_001894818.1| Ras-related protein Rab-18A [Brugia malayi]
gi|158598441|gb|EDP36329.1| Ras-related protein Rab-18A, putative [Brugia malayi]
Length = 194
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILIIG S VGK +++ R + F E A+ + V +N TA E
Sbjct: 13 ILIIGESGVGKSSLMLRFVDDTFDPEIAATIGVDFRVTSMMVNQNRDTAG--------QE 64
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDL 164
F + ++ V+++++ T + L HW+ +D + + + IGNK+D+
Sbjct: 65 RFRTLTPSYYRGAQGVICVYDVSNRQTFERLSHWMNEVDTYSTKTDAVKMLIGNKIDI 122
>gi|145348815|ref|XP_001418839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|308805733|ref|XP_003080178.1| YptC1 (ISS) [Ostreococcus tauri]
gi|116058638|emb|CAL54345.1| YptC1 (ISS) [Ostreococcus tauri]
gi|144579069|gb|ABO97132.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTGTYISTIGVDFKIRTVELEGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D+ + +A+K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDMESFEAVKGWLNEIDRYANENVNKLLVGNKSDL 125
>gi|317418970|emb|CBN81008.1| Ras-related protein Rab-7a [Dicentrarchus labrax]
Length = 204
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 38/190 (20%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IGSS VGK + ++R ++ F + ++ T+ + T + +W E F
Sbjct: 12 IILIGSSGVGKSSFMNRYVNHRFTNMYRATVGTDFLSKTVTIEGDTVTLQIWDTAGTERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVH 171
+P+ ++VF++ ++ AL+ W K L+ G P
Sbjct: 72 QSLGMPLYRGAHCCMLVFDVTSRASFSALEGW----------------RKEFLIQGEP-- 113
Query: 172 AEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEA 231
E +D F G + L D E S R L+WC E EY E
Sbjct: 114 -----------EDPSDFPFIVLG-----NKTDLSDREVSG---RQALQWCEEIGAEYFEG 154
Query: 232 CAS-NVDFDK 240
A ++D +K
Sbjct: 155 SAKEDLDVEK 164
>gi|332027975|gb|EGI68026.1| Ras-related protein Rab-1A [Acromyrmex echinatior]
Length = 208
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 16 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V++ D T + +K W+ ID + + L +GNK DL
Sbjct: 76 RTITSSYYRGAHGIIVVYDCTDQETFNNVKQWLEEIDRYACDNVNKLLVGNKCDL 130
>gi|322786717|gb|EFZ13086.1| hypothetical protein SINV_00792 [Solenopsis invicta]
Length = 206
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V++ D T + +K W+ ID + + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQETFNNVKQWLEEIDRYACDNVNKLLVGNKCDL 128
>gi|351725909|ref|NP_001235829.1| uncharacterized protein LOC100499773 [Glycine max]
gi|255626443|gb|ACU13566.1| unknown [Glycine max]
Length = 215
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT-----ADVSLWMAH 106
+L+IG S VGK T+L S FED S + G KY T + +++W
Sbjct: 20 LLLIGDSGVGKSTLLLSFTSDTFEDLSPTI------GVDFKVKYVTMGGKKSKLAIWDTA 73
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQKFE---ILLCIGNKV 162
E F + ++MV+++ T L W IDL I + +GNKV
Sbjct: 74 GQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKV 133
Query: 163 D 163
D
Sbjct: 134 D 134
>gi|260949137|ref|XP_002618865.1| hypothetical protein CLUG_00024 [Clavispora lusitaniae ATCC 42720]
gi|238846437|gb|EEQ35901.1| hypothetical protein CLUG_00024 [Clavispora lusitaniae ATCC 42720]
Length = 221
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + F+D +S+ + L + T +W E
Sbjct: 20 LVLLGESAVGKSSIVHRFVKNTFDDMRESTIGAAFLTQTINLPEANTTVKFEIWDTAGQE 79
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
+ + A + V+++ S+ + + W+ + Q E ++ +GNK DL
Sbjct: 80 RYKSLAPMYYRNANAALCVYDITSRSSFNKAQDWIEELKKQAPEGIVVALVGNKADLSHE 139
Query: 168 HPVH----AEYRRRLLKREESSAD 187
V EY RL ++ES+A+
Sbjct: 140 REVDESEIVEYIERL--KQESAAE 161
>gi|343475422|emb|CCD13178.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 208
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+N + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTESYISTIGVDFKIRTLNLDGKVIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ D+ + + +K W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDTTDMESFNNVKSWLSEIDKFASESVNKLLVGNKCDLVTKKA 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|449530083|ref|XP_004172026.1| PREDICTED: ras-related protein RABD1-like isoform 2 [Cucumis
sativus]
Length = 187
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKV 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|429329505|gb|AFZ81264.1| Ras related Rab1a small GTP-binding protein [Babesia equi]
Length = 200
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G S VGK +L R +F D+ ++ + TI + +W E F
Sbjct: 15 LVLVGDSGVGKSCLLLRFADDSFTDSYITTIGVDFRFRTIKVNDKRVKLQIWDTAGQERF 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +V+ ++L D S+ D + W+ +D E L +GNK D+
Sbjct: 75 RTITSTYYRGADGIVLAYDLTDKSSFDHISDWLAEVDKYAAEDTCKLLVGNKSDIQENRD 134
Query: 170 VHAEYRRRL 178
V +RL
Sbjct: 135 VDPSDVKRL 143
>gi|123454545|ref|XP_001315025.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|67944369|gb|AAY83820.1| small Rab GTPase RabC5 [Trichomonas vaginalis]
gi|121897689|gb|EAY02802.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 190
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G + VGK ILSR + +F+ + ++ I T + LW E+F
Sbjct: 6 VVIVGETKVGKSCILSRFVQGSFDASMPATIGAAFLTKVITTSEGPMRLQLWDTAGQEKF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEI-LLCIGNKVDL 164
+ V+V+++ S+L++L+ W I D I L+ IGNK+D+
Sbjct: 66 RSLAPMYYRSANVAVLVYDVTSKSSLESLEDWSAEIADKAPPGIKLVVIGNKIDM 120
>gi|395837388|ref|XP_003791617.1| PREDICTED: ras-related protein Rab-19 [Otolemur garnettii]
Length = 217
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ S + + ++ + V I+ K + +W E
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLEIDGK--KVKMQVWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F + A ++ ++L LST +++ HW+ I+ +++ IGNK DL
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRLSTFESVPHWIHEIEKYGAANLVIMLIGNKSDL 134
>gi|367017001|ref|XP_003682999.1| hypothetical protein TDEL_0G04210 [Torulaspora delbrueckii]
gi|359750662|emb|CCE93788.1| hypothetical protein TDEL_0G04210 [Torulaspora delbrueckii]
Length = 222
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 49 RPG-------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVS 101
RPG I+ +G VGK ++++R + F+D ++ + T+ T +
Sbjct: 5 RPGKSLTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQ 64
Query: 102 LWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILL 156
LW E F RSL I D A+V V+++ + + + W+ + ++ E ++L
Sbjct: 65 LWDTAGQERF--RSLIPSYIRDSRVAIV-VYDITKKKSFEFIDKWIEDVKNERGEENVIL 121
Query: 157 CI-GNKVDLLPGHPVHAE 173
CI GNK DL V E
Sbjct: 122 CIVGNKSDLADERQVSTE 139
>gi|401417481|ref|XP_003873233.1| putative small Rab GTP binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489462|emb|CBZ24720.1| putative small Rab GTP binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 211
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTA-DVSLWMAHLHEE 110
++++G S VGK +++ RL+ F + +S+ +T N TA +W E
Sbjct: 23 LVLLGESGVGKSSVVQRLMKNAFSEKLNSTVGASFFRYTCNVDDNTAVHFDIWDTAGQER 82
Query: 111 F-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDL 164
F S+ S+ ALV VF++ T + K+W+ + E +++ +GNK DL
Sbjct: 83 FKSLASMYYRGAAAALV-VFDIVSADTYEKAKYWIRELQSNSPETMVMLVGNKKDL 137
>gi|331234359|ref|XP_003329839.1| hypothetical protein PGTG_11776 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308829|gb|EFP85420.1| hypothetical protein PGTG_11776 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 236
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVN--GWTINTKYYTADVSLWMAHLHE 109
+L+IGSS+VGK ++L R F A +SS+ + V+ I+ K +S+W E
Sbjct: 33 LLLIGSSSVGKSSLLLRFTDQVFLSAEESSATIGVDFKFKLIDHKGKRYKLSIWDTAGQE 92
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVD 163
F + +++V+++ + ++ ++L W +D + + +GNKVD
Sbjct: 93 RFRTLTSSYYRGAQGVLLVYDVTNRASFESLPSWFSELDTFAHSPQDVVRVIVGNKVD 150
>gi|224043799|ref|XP_002191554.1| PREDICTED: ras and EF-hand domain-containing protein-like
[Taeniopygia guttata]
Length = 708
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G+S+VGK + L R F + ++ + N T+ + + LW E +
Sbjct: 523 IVFVGNSSVGKTSFLRRFCEDRFFPGTAATVGVDYNVRTVTVDHTQVALQLWDTAGQERY 582
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVD 163
+ + +++++++ T A+K W+ SI+ E + L +GNK D
Sbjct: 583 RSITKQFFRKADGVIVMYDITAKDTFTAVKQWLISIEEATGENMPVLLLGNKTD 636
>gi|339898641|ref|XP_003392649.1| putative small GTP-binding protein Rab1 [Leishmania infantum JPCM5]
gi|321398437|emb|CBZ08825.1| putative small GTP-binding protein Rab1 [Leishmania infantum JPCM5]
Length = 200
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+N + + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLESKVIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ D+ + + +K W+ I+ E + + +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIEKYASENVNKILVGNKCDLVTKKA 130
Query: 170 VHAEYRR 176
V + +
Sbjct: 131 VDTQMAK 137
>gi|255539911|ref|XP_002511020.1| protein with unknown function [Ricinus communis]
gi|223550135|gb|EEF51622.1| protein with unknown function [Ricinus communis]
Length = 203
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTANKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSYE 134
>gi|112292985|dbj|BAF02870.1| Rab13 [Mus musculus]
Length = 202
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQ 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQREQAEKLAR 141
>gi|67470746|ref|XP_651336.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|13537429|dbj|BAB40669.1| small GTPase Rab1A [Entamoeba histolytica]
gi|56468058|gb|EAL45948.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449708204|gb|EMD47708.1| small GTPase Rab1A, putative [Entamoeba histolytica KU27]
Length = 205
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D ++ + T+ + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDTHIATIGVDFKIKTVQIDGKNVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++V+++ DL T ++ W+ I+ E I L IGNK DL
Sbjct: 71 RTITSSYYRGAQGIIVVYSVIDLQTFQNVRQWLQEIERYASETVIKLLIGNKCDLDDERA 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VTVEQGQEL 139
>gi|429850247|gb|ELA25539.1| rab GTPase vps21 [Colletotrichum gloeosporioides Nara gc5]
Length = 241
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G + VGK +++ R ++ +F++ + + N T +W E F
Sbjct: 16 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCNLPTRTIKFEIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
+ + A ++V++L ++L KHWV + Q ++ +GNK+DL G
Sbjct: 76 ASLAPMYYRNAQAALVVYDLTKPTSLIKAKHWVAELQRQASPGIVIALVGNKLDLTNG 133
>gi|340713998|ref|XP_003395520.1| PREDICTED: ras-related protein Rab-1A-like [Bombus terrestris]
gi|350418865|ref|XP_003491994.1| PREDICTED: ras-related protein Rab-1A-like [Bombus impatiens]
gi|380024902|ref|XP_003696227.1| PREDICTED: ras-related protein Rab-1A-like [Apis florea]
Length = 206
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI+ T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V++ D T + +K W+ ID + + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQETFNNVKQWLEEIDRYACDNVNKLLVGNKCDL 128
>gi|448089001|ref|XP_004196690.1| Piso0_003915 [Millerozyma farinosa CBS 7064]
gi|448093180|ref|XP_004197721.1| Piso0_003915 [Millerozyma farinosa CBS 7064]
gi|359378112|emb|CCE84371.1| Piso0_003915 [Millerozyma farinosa CBS 7064]
gi|359379143|emb|CCE83340.1| Piso0_003915 [Millerozyma farinosa CBS 7064]
Length = 217
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTAD 99
DR +L+ I +IG S +GK +++ + + +F++ D L VN I K
Sbjct: 28 DRVALK----IGLIGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMDKKIQIKNTVIT 81
Query: 100 VSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILLC 157
S+W +EF I LP +S+ A++ +F+L STL+++K W + K I
Sbjct: 82 FSIWDLGGQKEF-INMLPLVSNDAVAILFMFDLTRKSTLNSIKEWYRQVRGFNKTAIPFL 140
Query: 158 IGNKVD 163
+G K D
Sbjct: 141 VGTKYD 146
>gi|334322507|ref|XP_003340260.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-13-like
[Monodelphis domestica]
Length = 201
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + T++ + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIXGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEVKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQAEKLAR 141
>gi|212275502|ref|NP_001130744.1| Ras protein RIC1 [Zea mays]
gi|194690000|gb|ACF79084.1| unknown [Zea mays]
gi|195605598|gb|ACG24629.1| ras-related protein RIC1 [Zea mays]
gi|195606872|gb|ACG25266.1| ras-related protein RIC1 [Zea mays]
gi|223942789|gb|ACN25478.1| unknown [Zea mays]
gi|413950363|gb|AFW83012.1| Ras protein RIC1 [Zea mays]
Length = 203
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSYEAGKAL 139
>gi|1448941|gb|AAB04618.1| ypt-related protein [Brassica rapa subsp. campestris]
Length = 206
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R + D+ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ ++ + + +K W+ ID + + L IGNK D++
Sbjct: 71 RTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANDSVCKLLIGNKNDMVESKV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSTETGKAL 139
>gi|334312769|ref|XP_001374724.2| PREDICTED: ras-related protein Rab-1A-like [Monodelphis domestica]
Length = 257
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 66 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 125
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 126 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 180
>gi|156366329|ref|XP_001627091.1| predicted protein [Nematostella vectensis]
gi|156213990|gb|EDO34991.1| predicted protein [Nematostella vectensis]
Length = 216
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFED-------ASDSSSELLVNGWTINTKYY 96
AS + + ++++G VGK +++ R + F D AS + L +NG +N
Sbjct: 4 ASRQNQFKVVLLGEGCVGKTSLMLRYVQDKFNDKHLTTLQASFLNKRLNINGQRVN---- 59
Query: 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF---E 153
+++W E F ++V+++ D + +K+WV +L+K +
Sbjct: 60 ---LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFLKVKNWVR--ELKKMLGDD 114
Query: 154 ILLCI-GNKVDLLPGHPVHA 172
I LCI GNK+DL V A
Sbjct: 115 ICLCIAGNKIDLEKDRHVEA 134
>gi|156349251|ref|XP_001621980.1| hypothetical protein NEMVEDRAFT_v1g176370 [Nematostella vectensis]
gi|156208357|gb|EDO29880.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
S+D + ++ ++ +G +VGK ++++R + +F++ ++ + T+ + T
Sbjct: 2 SSDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 61
Query: 100 VSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--I 154
+ LW E F RSL I D A+V V+++ + ++ W+ + ++ I
Sbjct: 62 LQLWDTAGQERF--RSLIPSYIRDSSVAVV-VYDITNYNSFQQTSKWIDDVRTERGNDVI 118
Query: 155 LLCIGNKVDLLPGHPVHAEYRRRLLK 180
++ +GNK DL V AE R K
Sbjct: 119 IMLVGNKTDLSDKRQVTAEEGERKAK 144
>gi|449530081|ref|XP_004172025.1| PREDICTED: ras-related protein RABD1-like isoform 1 [Cucumis
sativus]
Length = 191
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 15 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 75 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKV 134
Query: 170 VHAE 173
V +
Sbjct: 135 VDTQ 138
>gi|50728924|ref|XP_416347.1| PREDICTED: ras-related protein Rab-19 [Gallus gallus]
Length = 214
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ R + F + ++ + V I+ K + +W E
Sbjct: 18 IILIGDSNVGKTCVVHRFKTGQFYEKQQNTIGVDFTVRSMDIDGK--KVKIQVWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
F + ++ ++L ST +++ HWV ++ +++ IGNK D
Sbjct: 76 RFRTITQSYYRSAHGAILAYDLTRRSTFESIPHWVHEVEKYGAANLVMMLIGNKSD 131
>gi|384484365|gb|EIE76545.1| GTP-binding protein [Rhizopus delemar RA 99-880]
Length = 223
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK +LSR + F S S+ + + +T +W E +
Sbjct: 11 LVLIGDSGVGKSNLLSRFTTNEFNLESKSTIGVEFATKNLEIDNHTVKAQIWDTSGQERY 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWV--------PSIDLQKFEILLCIGNKVD 163
+ ++V+++ S+ ++HW+ P+I +++ +GNKVD
Sbjct: 71 RAITGAYYRGAVGALLVYDITRQSSFQNVQHWLKELRDHADPNI------VIMLVGNKVD 124
Query: 164 L 164
L
Sbjct: 125 L 125
>gi|242057717|ref|XP_002458004.1| hypothetical protein SORBIDRAFT_03g025350 [Sorghum bicolor]
gi|241929979|gb|EES03124.1| hypothetical protein SORBIDRAFT_03g025350 [Sorghum bicolor]
Length = 203
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSYEAGKAL 139
>gi|190348233|gb|EDK40655.2| hypothetical protein PGUG_04753 [Meyerozyma guilliermondii ATCC
6260]
Length = 228
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 38 MDSTDRASLEKRP--GILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINT 93
MD + + P ++++G S VGK + S+ + F +A ++ + L TIN
Sbjct: 1 MDGVSHEATKPNPTLKVVLLGDSGVGKTCMRSQFIHHMFTNAYKATIGGDYLTTSVTING 60
Query: 94 KYYT---ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
+ T ++ +W E F+ S V+V+++ + ++ +L+ W S LQ
Sbjct: 61 EGETNTKVNLQIWDTAGQERFNSISQAFYRGTDVAVLVYDITNYESVLSLRRWFKSF-LQ 119
Query: 151 KFEI----LLCIGNKVDLLPGHPVHAEYRRRLL 179
+ +L +GNKVD V E R LL
Sbjct: 120 HCHVEKPAILIVGNKVDRSSDRNVDIEEIRELL 152
>gi|1370162|emb|CAA66447.1| RAB1A [Lotus japonicus]
gi|388504068|gb|AFK40100.1| unknown [Lotus japonicus]
Length = 201
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVENKV 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|453085622|gb|EMF13665.1| hypothetical protein SEPMUDRAFT_148889 [Mycosphaerella populorum
SO2202]
Length = 205
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + LW E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSQSYKATIGADFLTKEVLVDDRLVT--MQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW-------VPSIDLQKFEILLCIGNKV 162
F + V+V+++N+ + D L W +D + F ++ +GNKV
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFDTLDSWRDEFLIQASPMDPESFPFVV-LGNKV 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQ--SGISETEGSS 202
D+ E +R++ + + A FCQ GI E S+
Sbjct: 128 DV--------EESKRMISTKRAQA---FCQQKGGIPYFETSA 158
>gi|378755983|gb|EHY66008.1| hypothetical protein NERG_00704 [Nematocida sp. 1 ERTm2]
Length = 202
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMA 105
+E+R I+I+GS + GK ++ + +S F+ ++ I T + LW
Sbjct: 1 MERRAKIVILGSCSSGKTSLAKKYISGGFDPNQAATIGAAFQTKEIQRDGQTFHLDLWDT 60
Query: 106 HLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVD 163
E + +I L D T LV V+++ D ++ + W + + K L+ GNK D
Sbjct: 61 AGQERYGAIAPLYYRDANTVLV-VYDITDRLSIKIAQQWCSEVRTKNKTASLVVFGNKTD 119
Query: 164 LL 165
LL
Sbjct: 120 LL 121
>gi|357512579|ref|XP_003626578.1| Ras-related GTP-binding protein [Medicago truncatula]
gi|355501593|gb|AES82796.1| Ras-related GTP-binding protein [Medicago truncatula]
Length = 232
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLS--VNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
+++IG S VGK +LSR F+ S E TIN K A + W E
Sbjct: 43 VVVIGDSAVGKTQMLSRFAKNEFCFDSKSTIGVEFQTRTVTINGKLIKAQI--WDTAGQE 100
Query: 110 EF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
+ ++ S L A+ +V+++ T D + W+ + +++ IGNK DL+
Sbjct: 101 RYRAVTSAYYRGALGAM-LVYDITKRQTFDHVARWIEELRSHADNSIVIMLIGNKGDLVD 159
Query: 167 GHPVHAE 173
VH +
Sbjct: 160 QRVVHTD 166
>gi|326914865|ref|XP_003203743.1| PREDICTED: ras-related protein Rab-1A-like [Meleagris gallopavo]
Length = 231
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 40 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 99
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 100 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 154
>gi|417408833|gb|JAA50952.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 228
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + +W E F
Sbjct: 36 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIDGKKIKLQVWDTAGQERF 95
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 96 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 155
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 156 VQKEQADKLAR 166
>gi|391338858|ref|XP_003743772.1| PREDICTED: ras-related protein Rab-8A-like [Metaseiulus
occidentalis]
Length = 210
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL++G SNVGK I+ R F D S+ + IN + +W E F
Sbjct: 14 ILVLGDSNVGKTCIVHRFCDERFYDTYISTIGIDFKQKIINLDGTPVKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++++++ ++ + + L +W +++ + + +GNK D
Sbjct: 74 RTLTTAYYRGAMGILIMYDVTNMDSFNHLTYWFRNVEENASPDVVKVLVGNKCDATSQRQ 133
Query: 170 VHA 172
V A
Sbjct: 134 VEA 136
>gi|348510295|ref|XP_003442681.1| PREDICTED: ras-related protein Rab-7a-like [Oreochromis niloticus]
Length = 204
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG+S VGK ++++R ++ F + ++ TIN T + +W E F
Sbjct: 12 VILIGNSGVGKSSVMNRYVNHRFTNMYRATVGTDFLSKTINIDGDTVTLQIWDTAGTERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK-------FEILLCIGNKVDL 164
P+ ++VF++ ++ AL W +Q F ++ +GNK DL
Sbjct: 72 QSLGTPLYRGAHCCMLVFDVTSKASFSALDGWRKEFLIQGEPKDPSDFPFIV-LGNKTDL 130
>gi|68481999|ref|XP_715017.1| likely rab family GTP-binding protein [Candida albicans SC5314]
gi|46436619|gb|EAK95978.1| likely rab family GTP-binding protein [Candida albicans SC5314]
gi|238878219|gb|EEQ41857.1| GTP-binding protein ypt5 [Candida albicans WO-1]
Length = 221
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + F+D +S+ + L TI T +W E
Sbjct: 15 LVLLGESAVGKSSIVHRFVKNTFDDMRESTIGAAFLTQTITIPESETTIKFEIWDTAGQE 74
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ + A + V+++ S+ + W+ + Q E ++ +GNK DL
Sbjct: 75 RYKSLAPMYYRNANAALCVYDITSRSSFQKAQDWIKELKKQAPEGIVIALVGNKSDL 131
>gi|123426563|ref|XP_001307064.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736292|gb|AAX97475.1| small Rab GTPase RabE2 [Trichomonas vaginalis]
gi|121888672|gb|EAX94134.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G VGK +I R + F+ + S+ T+N ++ LW EE+
Sbjct: 5 VVFLGEGRVGKTSIGKRWVDGFFDPSMRSTISAAFFQKTVNAGSKKINIQLWDTAGQEEY 64
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHW---VPSIDLQKFEILLCIGNKVDLLPG 167
S+ + D + A ++V+++ D + + ++ W + S +I+LC GNK+DL
Sbjct: 65 HSLAPIYYKDAVAA-ILVYSVTDSKSFEKMQQWRKELVSSRGDNIKIILC-GNKIDLPSQ 122
Query: 168 HPVHAEYRRRLLKR 181
V + + K+
Sbjct: 123 RTVQYDQAEAIAKQ 136
>gi|145506142|ref|XP_001439037.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831419|emb|CAI39301.1| rab_C53 [Paramecium tetraurelia]
gi|124406210|emb|CAK71640.1| unnamed protein product [Paramecium tetraurelia]
Length = 222
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
+I+GS++VGK +L + + F +A + + I + + + +W E FS
Sbjct: 11 IIVGSTSVGKSCLLLQYVEQKFRNAYQVTMGVEFGTNLIKSNGHVIKLYIWDTAGQESFS 70
Query: 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD-LLPGHPVH 171
++VF+L D + ++L W E+L C GN + ++ G+
Sbjct: 71 SMIRSYYRNAIGCILVFDLTDRKSFESLVKWYN-------EVLSCTGNDIQIIIVGNKSD 123
Query: 172 AEYRRRLLKRE 182
+ R + +RE
Sbjct: 124 LQNNREVQERE 134
>gi|167383306|ref|XP_001736482.1| rab6 [Entamoeba dispar SAW760]
gi|165901130|gb|EDR27285.1| rab6, putative [Entamoeba dispar SAW760]
Length = 186
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAH 106
R ++ IG +VGK I+ R S F+ + D++ ++ + ++ K ++ +W
Sbjct: 6 RHKVVFIGDCSVGKTCIIGRFTSKIFDMSYDATIGTDFVTQIMDVDNK--KIELQIWDTA 63
Query: 107 LHEEFSIRSLPISDQL---TALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163
E + RSL I + + + +V+V++++D T + + HW + + ++ +GNKVD
Sbjct: 64 GQERY--RSL-IPNYIRGASVVVIVYDISDKQTFNNIDHWFDEVPDRNSTLVYIVGNKVD 120
>gi|146413655|ref|XP_001482798.1| hypothetical protein PGUG_04753 [Meyerozyma guilliermondii ATCC
6260]
Length = 228
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 38 MDSTDRASLEKRP--GILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINT 93
MD + + P ++++G S VGK + S+ + F +A ++ + L TIN
Sbjct: 1 MDGVSHEATKPNPTLKVVLLGDSGVGKTCMRSQFIHHMFTNAYKATIGGDYLTTSVTING 60
Query: 94 KYYT---ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
+ T ++ +W E F+ S V+V+++ + ++ +L+ W S LQ
Sbjct: 61 EGETNTKVNLQIWDTAGQERFNSISQAFYRGTDVAVLVYDITNYESVLSLRRWFKSF-LQ 119
Query: 151 KFEI----LLCIGNKVDLLPGHPVHAEYRRRLL 179
+ +L +GNKVD V E R LL
Sbjct: 120 HCHVEKPAILIVGNKVDRSSDRNVDIEEIRELL 152
>gi|403303364|ref|XP_003942298.1| PREDICTED: ras-related protein Rab-8A isoform 2 [Saimiri
boliviensis boliviensis]
Length = 207
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F S+ + TI + +W E F
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGNKVDLL 165
+ +++V+++ + + D +++W+ +I D++K + +GNK D+
Sbjct: 71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK----MILGNKCDVN 126
Query: 166 PGHPVHAEYRRRL-----LKREESSADPDFCQSGISETEGSSLLGDEEPSWE 212
V E +L +K E+SA + +++ +G ++P E
Sbjct: 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENRHQSKNGQKIGRQQPPGE 178
>gi|224001286|ref|XP_002290315.1| ypt1-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
gi|220973737|gb|EED92067.1| ypt1-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
Length = 201
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSSLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDNESFNNVKQWLHEIDRYACENVNKLLVGNKCDLEGKRV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSTE 134
>gi|219116316|ref|XP_002178953.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409720|gb|EEC49651.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 208
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK +L R F ++ S+ + T+ T + +W E F
Sbjct: 18 LVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++MVF++ + D + W+ ++ E + L +GNK D
Sbjct: 78 RTITSAYYRGADGIIMVFDVTSTDSFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRTADRV 137
Query: 170 VHAEYRRRL 178
V E R
Sbjct: 138 VTEEQAREF 146
>gi|50082723|gb|AAT70056.1| Rab GTPase [Euplotes octocarinatus]
Length = 207
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYY 96
M+ D L+ +L++G+S GK +I+SRL+ NF ED S + G TK Y
Sbjct: 1 MEEVDSQKLDYLFKVLLVGNSGSGKTSIISRLVGENFNEDLSPTK------GIDFRTKDY 54
Query: 97 TADVSLWMAHLHE------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PS 146
D+ H+ E S+ S+ + + + +++V+++ D +L+ + W P
Sbjct: 55 QIDLKNVKLHIWELPRAENSKSVTSIYMKN-CSCVIVVYDITDKESLEWIDQWFLYASPQ 113
Query: 147 IDLQKFEILLCIGNKVDLLPGHPVHAE 173
I +IL GNK+DL + E
Sbjct: 114 IPEGCVKILC--GNKLDLSNERAITTE 138
>gi|281202863|gb|EFA77065.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 202
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ +++V+++ D T D ++ W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDRVTFDNVRQWLQEIDRFACESVNKLLVGNKSDLV 126
>gi|194741692|ref|XP_001953321.1| GF17263 [Drosophila ananassae]
gi|190626380|gb|EDV41904.1| GF17263 [Drosophila ananassae]
Length = 205
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AEY +L
Sbjct: 134 VDHTTAAEYAAQL 146
>gi|154415006|ref|XP_001580529.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121914747|gb|EAY19543.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 199
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
++IG S VGK +I++R L +F+ + S+ L ++ +W E++
Sbjct: 8 VMIGDSAVGKTSIVNRFLRNSFDQSEPSTVGALYESHNETRNGKPIELQIWDTAGQEQY- 66
Query: 113 IRSL-PISDQLTA-LVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
RSL PI + +A ++VF++ + + D+L W+ E I++ +GNK DL
Sbjct: 67 -RSLGPIYFRSSAGAILVFDITNQKSFDSLDEWLNFYRNAGCENTIVMIVGNKNDL 121
>gi|119590301|gb|EAW69895.1| RAB4A, member RAS oncogene family, isoform CRA_f [Homo sapiens]
Length = 150
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>gi|45201353|ref|NP_986923.1| AGR257Cp [Ashbya gossypii ATCC 10895]
gi|44986287|gb|AAS54747.1| AGR257Cp [Ashbya gossypii ATCC 10895]
gi|374110173|gb|AEY99078.1| FAGR257Cp [Ashbya gossypii FDAG1]
Length = 220
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G VGK ++++R + F+D ++ + T+ T + LW E F
Sbjct: 15 IVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTVYLDDRTIRLQLWDTAGQERF 74
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCI-GNKVDLL 165
RSL I D A+V V+++ + + + + WV + ++ E ++LCI GNK DL+
Sbjct: 75 --RSLIPSYIRDSHVAIV-VYDITNKKSFEYIDKWVEDVRNERGEENLILCIVGNKSDLV 131
Query: 166 PGHPVHAE 173
V E
Sbjct: 132 DERKVTVE 139
>gi|328866656|gb|EGG15039.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 202
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D T D ++ W+ ID E + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDRVTFDNVRQWLQEIDRFACESVNKLLVGNKSDLVAKKV 130
Query: 170 V 170
V
Sbjct: 131 V 131
>gi|308475031|ref|XP_003099735.1| CRE-RAB-10 protein [Caenorhabditis remanei]
gi|308266390|gb|EFP10343.1| CRE-RAB-10 protein [Caenorhabditis remanei]
Length = 201
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 46 LEKRP-----GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
+ +RP +L+IG S VGK IL R F S+ + TI K +
Sbjct: 1 MARRPYDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKL 60
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCI 158
+W E F + +++V+++ + + D + W+ +ID E + + +
Sbjct: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMIL 120
Query: 159 GNKVDL 164
GNK D+
Sbjct: 121 GNKCDM 126
>gi|195565233|ref|XP_002106207.1| GD16245 [Drosophila simulans]
gi|194203580|gb|EDX17156.1| GD16245 [Drosophila simulans]
Length = 197
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +++ R + F++ D + + +N V+LW E F
Sbjct: 8 LLVIGESGVGKSSLIRRFVENKFDNNHDVTIGMDFKSKVMNVDGIDYKVALWDTAGAERF 67
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVD 163
RSL S AL ++V+++ +L L+ W+ +D ++ +GNK+D
Sbjct: 68 --RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID 122
>gi|189188490|ref|XP_001930584.1| GTP-binding protein YPT52 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330926522|ref|XP_003301495.1| hypothetical protein PTT_13015 [Pyrenophora teres f. teres 0-1]
gi|187972190|gb|EDU39689.1| GTP-binding protein YPT52 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311323627|gb|EFQ90397.1| hypothetical protein PTT_13015 [Pyrenophora teres f. teres 0-1]
Length = 243
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 44 ASLEKRPG----ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
AS + +P ++++G + VGK +++ R ++ +F++ + + N T
Sbjct: 4 ASAQPKPSSSVKLVLLGEAAVGKSSLVMRFVNNDFQENKEPTIGAAFLTQKCNLPTRTIK 63
Query: 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLC 157
+W E F+ + A ++V+++ S+L +HWV + Q ++
Sbjct: 64 FEIWDTAGQERFASLAPMYYRNAQAALVVYDITKPSSLTKAQHWVAELHRQASPGIVIAL 123
Query: 158 IGNKVDL 164
+GNK DL
Sbjct: 124 VGNKFDL 130
>gi|357620515|gb|EHJ72673.1| putative ras-related protein Rab-9 [Danaus plexippus]
Length = 228
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I+I+G VGK ++SR +S +F+D + + E + + K YT + +W E
Sbjct: 21 IVILGDGGVGKSCLMSRFISNHFDDHNFHTIGVEFMNKMIEVGGKQYT--LQIWDTAGQE 78
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--------DLQKFEILLCIGNK 161
F P ++ + ++D S+ + +K W+ ++KF ++ +GNK
Sbjct: 79 RFKSLRTPFYRGTDICILAYAIDDRSSFNNIKTWLNEFLNYAGVKNGIEKFPFIV-VGNK 137
Query: 162 VDL 164
D+
Sbjct: 138 SDV 140
>gi|167383422|ref|XP_001736530.1| hypothetical protein [Entamoeba dispar SAW760]
gi|167386470|ref|XP_001737766.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165899218|gb|EDR25857.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
gi|165901052|gb|EDR27225.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 208
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE-FS 112
IIG GK + R+++ F S L G TK+Y D + E +S
Sbjct: 17 IIGDRGSGKTCLCDRIVNNQF-----ISKYLPPIGIDYKTKFYIIDNKIIRTAFWEFCYS 71
Query: 113 IRSLPISDQL---TALVMVFNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPG 167
R PI D+L T L+++F++++ + +LK++ I Q + CIG K DL
Sbjct: 72 NRYCPIGDELKGSTLLLLIFDMSNSDSFHSLKYYYKRISHQFLLPPPIFCIGTKSDL--- 128
Query: 168 HPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206
P R+ L + ++ + P + S ++ + +S+ D
Sbjct: 129 -PSTISERQILKQLKKMNYPPLYYSSSLTGSACNSIHSD 166
>gi|125773595|ref|XP_001358056.1| GA17362 [Drosophila pseudoobscura pseudoobscura]
gi|195166166|ref|XP_002023906.1| GL27164 [Drosophila persimilis]
gi|54637791|gb|EAL27193.1| GA17362 [Drosophila pseudoobscura pseudoobscura]
gi|194106066|gb|EDW28109.1| GL27164 [Drosophila persimilis]
Length = 205
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AEY +L
Sbjct: 134 VDHTTAAEYAAQL 146
>gi|432877573|ref|XP_004073166.1| PREDICTED: ras-related protein Rab-6B-like isoform 3 [Oryzias
latipes]
Length = 211
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 78
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ +L++ W+ + ++ I++ +GNK DL
Sbjct: 79 --RSLIPSYIRDSAAAVV-VYDIANLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 167 GHPVHAEYRRR 177
V E R
Sbjct: 136 KRQVSVEAAER 146
>gi|268552453|ref|XP_002634209.1| C. briggsae CBR-RAB-19 protein [Caenorhabditis briggsae]
Length = 209
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G VGK ++ R S NF D ++ + T+N + +W E F
Sbjct: 13 IVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLNVDGKRVKLQIWDTGGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ +V+ +++ + +L+ W+ D+ KF L IG K DL
Sbjct: 73 RTITQSYYRSANGIVLCYDITCKQSFGSLQRWID--DVSKFAAPNVAKLLIGTKCDLEDQ 130
Query: 168 HPVHAEYRRRLLKR 181
+ E LL+R
Sbjct: 131 RAIETE-EAELLQR 143
>gi|402083928|gb|EJT78946.1| GTP-binding protein ypt5 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 221
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +I+ R + F+ +S TI + T +SL
Sbjct: 22 LVLLGESAVGKSSIVLRFVKDQFDSYRES---------TIGAAFLTQTISLDENTTVKFE 72
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ ++LD K WV + Q E I+ G
Sbjct: 73 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQANENIIIALAG 132
Query: 160 NKVDLLPGHP 169
NK+DL+ P
Sbjct: 133 NKLDLVTEQP 142
>gi|341885115|gb|EGT41050.1| hypothetical protein CAEBREN_19821 [Caenorhabditis brenneri]
gi|341885137|gb|EGT41072.1| hypothetical protein CAEBREN_20077 [Caenorhabditis brenneri]
Length = 201
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 46 LEKRP-----GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
+ +RP +L+IG S VGK IL R F S+ + TI K +
Sbjct: 1 MARRPYDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKL 60
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCI 158
+W E F + +++V+++ + + D + W+ +ID E + + +
Sbjct: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMIL 120
Query: 159 GNKVDL 164
GNK D+
Sbjct: 121 GNKCDM 126
>gi|340373100|ref|XP_003385080.1| PREDICTED: ras-related protein Rab-8B-like [Amphimedon
queenslandica]
Length = 239
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD 99
S RA L K IL+IG S+VGK TI +RL ED S + G+ + K + D
Sbjct: 34 SNRRAKLAKAYKILLIGESSVGKTTIATRLC----EDRFMSEARQHTLGFDMFEKDFQVD 89
Query: 100 -----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
V LW E + + +V+V+++ + + + L W+ ++
Sbjct: 90 GEFLKVQLWDTVGQECYDSITTSYYRGGAGIVIVYDITSMRSFEMLSKWMGYVETHATAD 149
Query: 154 -ILLCIGNKVDL 164
++ +G+K DL
Sbjct: 150 VSMMILGSKCDL 161
>gi|189233646|ref|XP_972453.2| PREDICTED: similar to rab6 [Tribolium castaneum]
Length = 324
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 25 LSFVRVLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSEL 84
L F R++ F + S D + ++ ++ +G +VGK ++++R + +F++ ++ +
Sbjct: 104 LVFKRIVKFLTKMSTSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 163
Query: 85 LVNGWTINTKYYTADVSLWMAHLHEEFSIRSL-P--ISDQLTALVMVFNLNDLSTLDALK 141
T+ + T + LW E F RSL P I D A+V V+++ + ++
Sbjct: 164 DFLSKTMYLEDRTVRLQLWDTAGQERF--RSLIPSYIRDSTVAVV-VYDITNANSFHQTS 220
Query: 142 HWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLK 180
W+ + ++ I++ +GNK DL V E R K
Sbjct: 221 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 261
>gi|432890268|ref|XP_004075447.1| PREDICTED: ras-related protein Rab-4B-like [Oryzias latipes]
Length = 213
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + IN T + +W E F
Sbjct: 11 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVINVGGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ ++ I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALSNWLTDARTLASPNIVIILC-GNKKDL 125
>gi|302755370|ref|XP_002961109.1| rab family GTPase [Selaginella moellendorffii]
gi|300172048|gb|EFJ38648.1| rab family GTPase [Selaginella moellendorffii]
Length = 221
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG-----WTINTKYYTADVSLW 103
R +L+IG S VGK +L R F D S ++S + G TI + +W
Sbjct: 16 RIKLLLIGDSGVGKSCVLLR-----FSDDSFTTSFITTIGIDFKIRTIELDGRRVKLQVW 70
Query: 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNK 161
E F + +++V+++ D S+ + +++WV +I+ E + + +GNK
Sbjct: 71 DTAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWVKNIEQNASENVSRVLVGNK 130
Query: 162 VDL 164
D+
Sbjct: 131 ADM 133
>gi|302766964|ref|XP_002966902.1| rab family GTPase [Selaginella moellendorffii]
gi|300164893|gb|EFJ31501.1| rab family GTPase [Selaginella moellendorffii]
Length = 221
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG-----WTINTKYYTADVSLW 103
R +L+IG S VGK +L R F D S ++S + G TI + +W
Sbjct: 16 RIKLLLIGDSGVGKSCVLLR-----FSDDSFTTSFITTIGIDFKIRTIELDGRRVKLQVW 70
Query: 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNK 161
E F + +++V+++ D S+ + +++WV +I+ E + + +GNK
Sbjct: 71 DTAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWVKNIEQNASENVSRVLVGNK 130
Query: 162 VDL 164
D+
Sbjct: 131 ADM 133
>gi|24648682|ref|NP_732610.1| Rab1 [Drosophila melanogaster]
gi|194899532|ref|XP_001979313.1| GG14761 [Drosophila erecta]
gi|195355524|ref|XP_002044241.1| GM15089 [Drosophila sechellia]
gi|195498456|ref|XP_002096531.1| Rab1 [Drosophila yakuba]
gi|195569217|ref|XP_002102607.1| GD19996 [Drosophila simulans]
gi|2313033|dbj|BAA21705.1| rab1 [Drosophila melanogaster]
gi|7300727|gb|AAF55873.1| Rab1 [Drosophila melanogaster]
gi|190651016|gb|EDV48271.1| GG14761 [Drosophila erecta]
gi|194129542|gb|EDW51585.1| GM15089 [Drosophila sechellia]
gi|194182632|gb|EDW96243.1| Rab1 [Drosophila yakuba]
gi|194198534|gb|EDX12110.1| GD19996 [Drosophila simulans]
gi|209417952|gb|ACI46514.1| FI01544p [Drosophila melanogaster]
Length = 205
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AEY +L
Sbjct: 134 VDHTTAAEYAAQL 146
>gi|356559913|ref|XP_003548240.1| PREDICTED: ras-related protein RABA3-like [Glycine max]
Length = 244
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 34 GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN--FEDASDSSSELLVNGWTI 91
G +++D + ++ +++IG S VGK ILSR F+ S E TI
Sbjct: 17 GHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTI 76
Query: 92 NTKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
N K A + W E + ++ S L A+ +V+++ + D + WV +
Sbjct: 77 NAKVIKAQI--WDTAGQERYRAVTSAYYRGALGAM-LVYDITKRQSFDHVARWVEELRAH 133
Query: 151 KFE--ILLCIGNKVDLLPGHPVHAE 173
+++ +GNK DL+ V E
Sbjct: 134 ADSSIVIMLVGNKADLVDQRMVPTE 158
>gi|348515485|ref|XP_003445270.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Oreochromis
niloticus]
gi|410913475|ref|XP_003970214.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Takifugu
rubripes]
Length = 211
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 78
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ +L++ W+ + ++ I++ +GNK DL
Sbjct: 79 --RSLIPSYIRDSAAAVV-VYDIANLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 167 GHPVHAEYRRR 177
V E R
Sbjct: 136 KRQVSVEAAER 146
>gi|427787329|gb|JAA59116.1| Putative rab-protein 3 [Rhipicephalus pulchellus]
Length = 221
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG+S+VGK + L R +F A S+ + T+ + +W E +
Sbjct: 24 ILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++++++ + + ++++ WV I ++ ++ +GNK D+
Sbjct: 84 RTITTAYYRGAMGFILMYDVTNEESFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDERV 143
Query: 170 VHAEYRRRL 178
V AE R+L
Sbjct: 144 VSAERGRQL 152
>gi|195454241|ref|XP_002074152.1| GK12772 [Drosophila willistoni]
gi|194170237|gb|EDW85138.1| GK12772 [Drosophila willistoni]
Length = 205
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL----L 165
+ +++V++ D + + +K W+ I+ E + L +GNK DL +
Sbjct: 74 RTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
Query: 166 PGHPVHAEYRRRL 178
H AEY +L
Sbjct: 134 VDHTTAAEYAAQL 146
>gi|407039382|gb|EKE39614.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 205
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D ++ + T+ + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTDTHIATIGVDFKIKTVQIDGKNIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ +++V+++ DL T ++ W+ I+ E I L IGNK DL
Sbjct: 71 RTITSSYYRGAQGIIVVYSVIDLQTFQNVRQWLQEIERYASETVIKLLIGNKCDLEDERA 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VTVEQGQEL 139
>gi|225712954|gb|ACO12323.1| Ras-related protein ORAB-1 [Lepeophtheirus salmonis]
Length = 201
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG + VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDTGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + LK W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQDSFNNLKQWLQEIDRYACENVNKLLVGNKCDL 125
>gi|123411116|ref|XP_001303828.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121885235|gb|EAX90898.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
++IGSS VGK +L RL F + S+ + TI +++W E+F
Sbjct: 12 IVIGSSGVGKTALLKRLTENKFYEQLQSTIGVEYETTTIEVDGDKIKLNIWDTAGQEKFR 71
Query: 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDLLPGHP 169
S + +++VF+L D + + + W+ + K IL+ + NK DL
Sbjct: 72 SISRAYFREAMCVLLVFSLTDKQSFEDMSQWLSDVRQLCDHKASILI-VANKSDLTETRV 130
Query: 170 VHA 172
+ A
Sbjct: 131 ISA 133
>gi|289742629|gb|ADD20062.1| GTPase Rab5/YPT51 [Glossina morsitans morsitans]
Length = 262
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV---------SL 102
++I+GS VGK ++++ + + SE G T+ ++T V +
Sbjct: 8 VVILGSRGVGKTRLVTKYIKSTLQ------SEF---GPTVAPSFFTCKVLLDDYKVILQI 58
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGN 160
W E F + A ++VF+L+ T +K W+ + ++Q IL +GN
Sbjct: 59 WDTAGQERFKAVTPMYYRNANAAILVFDLSQHRTFKEIKGWIQELHSNVQGPMILTLVGN 118
Query: 161 KVDLLPGHPVHAE 173
K+DLL V E
Sbjct: 119 KLDLLSERAVSRE 131
>gi|195340580|ref|XP_002036891.1| GM12630 [Drosophila sechellia]
gi|194131007|gb|EDW53050.1| GM12630 [Drosophila sechellia]
Length = 197
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +++ R + F++ D + + +N V+LW E F
Sbjct: 8 LLVIGESGVGKSSLIRRFVENKFDNNHDVTIGMDFKSKVMNVDGIDYKVALWDTAGAERF 67
Query: 112 SIRSLPISDQLTAL--VMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVD 163
RSL S AL ++V+++ +L L+ W+ +D ++ +GNK+D
Sbjct: 68 --RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID 122
>gi|432607|gb|AAB28535.1| ras-related GTP binding protein possessing GTPase activity [Oryza
sativa]
Length = 202
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSYEAGKAL 139
>gi|440494412|gb|ELQ76793.1| GTPase Rab11/YPT3, small G protein superfamily [Trachipleistophora
hominis]
Length = 207
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +LS+L F + ++ + T +W E +
Sbjct: 10 IVLIGDSGVGKTNLLSQLTRKEFSAETKATIGVEFATKTFKIDSLVIKAQIWDTAGQERY 69
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTL-DALKHWVPSIDL---QKFEILLCIGNKVDL 164
+I S L ALV V+++ STL +A KHW+ + ++ EI+L +GNK DL
Sbjct: 70 RAITSAYYRGTLGALV-VYDITRKSTLSNATKHWLTQLKEYSGEEIEIML-VGNKTDL 125
>gi|429966212|gb|ELA48209.1| small GTP-binding protein domain protein [Vavraia culicis
'floridensis']
Length = 198
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G +VGK T++S+ + ++ + + +N + + LW E +
Sbjct: 7 IVFLGDPSVGKTTLISQFTNKEADENYHPTIGIDFTYLRVNLQGKDVRLQLWDTAGQERY 66
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI----DLQKFEILLCIGNKVDLL 165
+ + + A V+VF+L LS+ D + HW+ + D + ++ +GNK DL+
Sbjct: 67 NSIIPNYTRKSFAAVIVFDLKHLSSFDNIDHWIKDLVLINDPDRLIKIVIVGNKKDLM 124
>gi|357519975|ref|XP_003630276.1| Ras-related protein Rab-18-B [Medicago truncatula]
gi|355524298|gb|AET04752.1| Ras-related protein Rab-18-B [Medicago truncatula]
gi|388503306|gb|AFK39719.1| unknown [Medicago truncatula]
Length = 208
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 23/139 (16%)
Query: 34 GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT 93
G+QE D + +L+IG S VGK ++L R S +F+D S + G
Sbjct: 6 GQQEFDYMFK--------LLMIGDSGVGKSSLLLRFTSDDFDDLSPTI------GVDFKV 51
Query: 94 KYYTAD-----VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSI 147
KY T + +++W E F + ++MV+++ T L W I
Sbjct: 52 KYVTIEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEI 111
Query: 148 DLQKFE---ILLCIGNKVD 163
DL + + +GNKVD
Sbjct: 112 DLYSTNQDCMKMLVGNKVD 130
>gi|167524781|ref|XP_001746726.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774996|gb|EDQ88622.1| predicted protein [Monosiga brevicollis MX1]
Length = 203
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + + S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYSETYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + D +K W+ I+ E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDKESFDNVKQWLTEIERYACENVNKLLVGNKSDL 125
>gi|57524538|ref|NP_001004002.1| ras-related protein Rab-4B [Danio rerio]
gi|62901076|sp|Q68EK7.1|RAB4B_DANRE RecName: Full=Ras-related protein Rab-4B
gi|51330885|gb|AAH80219.1| Zgc:101015 [Danio rerio]
Length = 213
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + +N T + +W E F
Sbjct: 11 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ ++ I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILC-GNKKDL 125
>gi|365990439|ref|XP_003672049.1| hypothetical protein NDAI_0I02380 [Naumovozyma dairenensis CBS 421]
gi|343770823|emb|CCD26806.1| hypothetical protein NDAI_0I02380 [Naumovozyma dairenensis CBS 421]
Length = 222
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+ +G VGK ++++R + F+D ++ + T+ T + LW E F
Sbjct: 13 IVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERF 72
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCI-GNKVDLL 165
RSL I D A+V V+++ + D + W+ + ++ E ++LCI GNK DL
Sbjct: 73 --RSLIPSYIRDSRVAIV-VYDITKKESFDFIDKWINDVKNERGEDNVILCIVGNKNDLT 129
Query: 166 PGHPVHAE 173
V E
Sbjct: 130 DQRQVSIE 137
>gi|67474266|ref|XP_652882.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56469780|gb|EAL47496.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790062|dbj|BAD82827.1| small GTPase EhRabC7 [Entamoeba histolytica]
gi|449709492|gb|EMD48750.1| small GTPase EhRabC7, putative [Entamoeba histolytica KU27]
Length = 195
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK I+ R F+ S+ + N TI+ T + +W E F
Sbjct: 10 VLVIGESSVGKTAIMERFCENQFKGDYMSTIGMDFNTKTISVNGQTIKLKIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVD 163
+ ++V+++ + + + L +W+ ++ EI++ +GNK+D
Sbjct: 70 RNVTTSYYRGTQGCLVVYDVCNKGSFEMLDYWIEEYKREQPNSEIVI-VGNKID 122
>gi|72051607|ref|XP_789105.1| PREDICTED: ras-related protein Rab-20-like [Strongylocentrotus
purpuratus]
Length = 222
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G + VGK T + R + F + + V ++ ++V+LW E F
Sbjct: 14 VVIVGDATVGKTTFIRRYMDGVFTENPGQT----VGACFFLKQWGNSNVALWDTAGEERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCI-GNKVDLL 165
S S +A ++ +++ ST + L+ ++P ++ K + LLC+ G K DL+
Sbjct: 70 SGLSSFYCRDASAAIIAYDVTRRSTFELLQERYIPLLESAKEDCLLCVTGMKSDLV 125
>gi|195432625|ref|XP_002064317.1| GK20101 [Drosophila willistoni]
gi|194160402|gb|EDW75303.1| GK20101 [Drosophila willistoni]
Length = 216
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL++G S VGK +L R L + D S+S+ + T + D+ LW E F
Sbjct: 12 ILMLGDSGVGKTCLLQRFLENRYTDNSESTVGIDFRLHTHKLSGHLVDLQLWDTAGEERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI----LLCIGNKVDLLPG 167
+++V++ T + + W+ +D+Q+ ++ +GNK D L
Sbjct: 72 RSVGTTYYRGAHGIILVYDTTKRETFNNIDSWL--LDIQRHAAEGVNIMIVGNKCDALGQ 129
Query: 168 HPV 170
V
Sbjct: 130 RQV 132
>gi|340508720|gb|EGR34368.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 201
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
KR +L++G NVGK IL R +S F+ + + I + ++ W
Sbjct: 36 KRFKVLVLGDGNVGKSQILDRYISDQFDHKYKPTIAIDYKNKVIEQQKEIVQLNFWDFSG 95
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV 144
H EF + A++++F++ +LD L W+
Sbjct: 96 HPEFYEVRNEFYKESNAIILIFDVGLKRSLDGLDLWL 132
>gi|327356231|gb|EGE85088.1| GTP-binding protein YPT52 [Ajellomyces dermatitidis ATCC 18188]
Length = 287
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|326493844|dbj|BAJ85384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 203
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAESRV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSYEAGKAL 139
>gi|313232635|emb|CBY19305.1| unnamed protein product [Oikopleura dioica]
Length = 212
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
++ ++ +G +VGK ++++R + +F++ ++ + T+ + T + LW
Sbjct: 12 RKYKVVFLGKQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 71
Query: 108 HEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
HE F RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK
Sbjct: 72 HERF--RSLIPSYIRDSTVAVV-VYDVANVNSFQQTSKWIDDVRAERGTDVIIMLVGNKT 128
Query: 163 DL 164
DL
Sbjct: 129 DL 130
>gi|226503041|ref|NP_001149268.1| ras-related protein Rab-18 [Zea mays]
gi|195625924|gb|ACG34792.1| ras-related protein Rab-18 [Zea mays]
gi|223972897|gb|ACN30636.1| unknown [Zea mays]
gi|413920116|gb|AFW60048.1| Ras protein Rab-18 [Zea mays]
Length = 215
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEE 110
+L+IG S VGK ++L R + +FED S + + V TI K +++W E
Sbjct: 22 LLLIGDSGVGKSSLLLRFTADSFEDLSPTIGVDFKVKMVTIGGK--KLKLAIWDTAGQER 79
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQKFE---ILLCIGNKVD 163
F + ++MV+++ T L W IDL I + +GNKVD
Sbjct: 80 FRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVD 136
>gi|449431874|ref|XP_004133725.1| PREDICTED: ras-related protein RABD1-like isoform 1 [Cucumis
sativus]
Length = 204
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 14 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 74 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKV 133
Query: 170 VHAE 173
V +
Sbjct: 134 VDTQ 137
>gi|268567998|ref|XP_002640132.1| C. briggsae CBR-RAB-10 protein [Caenorhabditis briggsae]
Length = 201
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK IL R F S+ + TI K + +W E F
Sbjct: 12 LLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ +++V+++ + + D + W+ +ID E + + +GNK D+
Sbjct: 72 HTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMILGNKCDM 126
>gi|363755488|ref|XP_003647959.1| hypothetical protein Ecym_7305 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891995|gb|AET41142.1| hypothetical protein Ecym_7305 [Eremothecium cymbalariae
DBVPG#7215]
Length = 213
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 40 STDRASLEKRPG---------ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT 90
ST R + PG +L++G S VGK +L R + F + ++ + T
Sbjct: 2 STLRGTPSTTPGGKGYDSIMKVLLVGDSGVGKSCLLVRFVEDKFSPSFITTIGIDFKIKT 61
Query: 91 INTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ 150
++ + LW E F + +++V+++ D T + ++ W +++
Sbjct: 62 VDIDGKKIKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFENIRQWFSTVNQH 121
Query: 151 KFE--ILLCIGNKVDL 164
E +L +GNK D+
Sbjct: 122 ATEDAQILLVGNKKDM 137
>gi|164660430|ref|XP_001731338.1| hypothetical protein MGL_1521 [Malassezia globosa CBS 7966]
gi|159105238|gb|EDP44124.1| hypothetical protein MGL_1521 [Malassezia globosa CBS 7966]
Length = 229
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDS-SSELLVNGWTINTKYYTADVSLWMAHLH 108
+L+IGSS VGK ++ R F EDA+ + + + ++ K++ +S+W
Sbjct: 15 LLLIGSSGVGKSALVRRYTDDVFVEEDAAATIGVDYKIKSLCVDGKWFK--LSIWDTAGQ 72
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-----ILLCIGNKVD 163
E + + +V+++++ DL + + + WV +L+ FE + L GNKVD
Sbjct: 73 ERYRTLTSSYYRGAQGVVILYDVTDLRSYEDVPQWVH--ELRTFEGDVPPVCLLAGNKVD 130
Query: 164 LLPGHPVHAE 173
+ V E
Sbjct: 131 IAEERQVSTE 140
>gi|115437604|ref|NP_001043336.1| Os01g0558600 [Oryza sativa Japonica Group]
gi|109940139|sp|P40392.2|RIC1_ORYSJ RecName: Full=Ras-related protein RIC1
gi|57899331|dbj|BAD87942.1| Ras-related protein RIC1 [Oryza sativa Japonica Group]
gi|57900421|dbj|BAD87657.1| Ras-related protein RIC1 [Oryza sativa Japonica Group]
gi|113532867|dbj|BAF05250.1| Os01g0558600 [Oryza sativa Japonica Group]
gi|125526416|gb|EAY74530.1| hypothetical protein OsI_02420 [Oryza sativa Indica Group]
gi|125570818|gb|EAZ12333.1| hypothetical protein OsJ_02222 [Oryza sativa Japonica Group]
gi|215769435|dbj|BAH01664.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 202
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSYEAGKAL 139
>gi|427787355|gb|JAA59129.1| Putative rab-protein 3 [Rhipicephalus pulchellus]
Length = 221
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG+S+VGK + L R +F A S+ + T+ + +W E +
Sbjct: 24 ILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++++++ + + ++++ WV I ++ ++ +GNK D+
Sbjct: 84 RTITTAYYRGAMGFILMYDVTNEESFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDERV 143
Query: 170 VHAEYRRRL 178
V AE R+L
Sbjct: 144 VSAERGRQL 152
>gi|72171442|ref|XP_788580.1| PREDICTED: ras-related protein Rab-20-like [Strongylocentrotus
purpuratus]
Length = 222
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G + VGK T + R + F + + V ++ ++V+LW E F
Sbjct: 14 VVIVGDATVGKTTFIRRYMDGVFTENPGQT----VGACFFLKQWGNSNVALWDTAGEERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCI-GNKVDLL 165
S S +A ++ +++ ST + L+ ++P ++ K + LLC+ G K DL+
Sbjct: 70 SGLSSFYCRDASAAIIAYDVTRRSTFELLQERYIPLLESAKEDCLLCVTGMKSDLV 125
>gi|145478533|ref|XP_001425289.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833722|emb|CAI39334.1| rab_B46 [Paramecium tetraurelia]
gi|124392358|emb|CAK57891.1| unnamed protein product [Paramecium tetraurelia]
Length = 197
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G SNVGK +IL R F + + L + K + +W E+F
Sbjct: 10 IILLGDSNVGKTSILKRYSEDTFSEQQAPTIGLAFYKKVVERKNIKITLEIWDTAGQEKF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVD 163
+ A+++ F+++ TL+ K W+ ID L + +GNK D
Sbjct: 70 KKIAPIYYRNAQAVLICFDVSKSETLEGAKRWLEEIDKYLSSDCVKFLVGNKQD 123
>gi|401882786|gb|EJT47030.1| small monomeric GTPase [Trichosporon asahii var. asahii CBS 2479]
Length = 196
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTAD 99
DR ++ + G+ +G + +GK +++ + + +F++ D L VN I +
Sbjct: 24 DRNAIVLKVGM--VGDAQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKAITIRNTEIT 79
Query: 100 VSLWMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLC 157
S+W EF + LP +S+ A++ +F+L STL+++K W + K I +
Sbjct: 80 FSIWDLGGQREF-VSMLPLVSNDAVAILFMFDLTRKSTLNSVKEWYRQARGFNKTAIPVL 138
Query: 158 IGNKVDLLPGHP 169
IG K D+ +P
Sbjct: 139 IGTKYDIFASYP 150
>gi|391341712|ref|XP_003745171.1| PREDICTED: ras-related protein Rab-33B-like [Metaseiulus
occidentalis]
Length = 231
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+IIG SNVGK + R + + ++++ + T++ + LW E F
Sbjct: 24 IIIIGDSNVGKTCLTFRFCAGRYPKKTEATIGVDFRERTLDIDGEQVTLQLWDTAGQERF 83
Query: 112 SIRSL--PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ----KFEILLCIGNKVDL 164
+SL + A+V V+++ + S+ D L W+ D Q K +L +GNK DL
Sbjct: 84 R-KSLVQHYYRNVNAVVFVYDVTNQSSFDELPLWIAECDTQCPGSKIPRIL-VGNKCDL 140
>gi|398406058|ref|XP_003854495.1| ras-related protein-like protein [Zymoseptoria tritici IPO323]
gi|339474378|gb|EGP89471.1| ras-related protein-like protein [Zymoseptoria tritici IPO323]
Length = 205
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + LW E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTKEVLVDDRLVT--MQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW-------VPSIDLQKFEILLCIGNKV 162
F + V+V+++N+ + D L W +D + F ++ +GNKV
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFDTLDSWRDEFLIQASPMDPESFPFVV-LGNKV 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQS--GISETEGSS 202
D+ E +R++ + + A FCQ+ GI E S+
Sbjct: 128 DV--------EESKRMISSKRAMA---FCQAKGGIPYFETSA 158
>gi|261190448|ref|XP_002621633.1| GTP-binding protein ypt1 [Ajellomyces dermatitidis SLH14081]
gi|239591056|gb|EEQ73637.1| GTP-binding protein ypt1 [Ajellomyces dermatitidis SLH14081]
gi|239614972|gb|EEQ91959.1| GTP-binding protein ypt1 [Ajellomyces dermatitidis ER-3]
Length = 221
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 31 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERF 90
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ + +V+++ D+ + + +K W+ ID E + L +GNK D+
Sbjct: 91 RTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDM 145
>gi|115396284|ref|XP_001213781.1| vacuolar protein sorting-associated protein 21 [Aspergillus terreus
NIH2624]
gi|114193350|gb|EAU35050.1| vacuolar protein sorting-associated protein 21 [Aspergillus terreus
NIH2624]
Length = 263
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V+++ S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|387016274|gb|AFJ50256.1| GTP-binding protein [Crotalus adamanteus]
Length = 208
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>gi|397620779|gb|EJK65905.1| hypothetical protein THAOC_13196 [Thalassiosira oceanica]
Length = 205
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV- 100
++++ + + +L+IG S VGK +L R A++S S + I+ K +V
Sbjct: 3 NQSAYDMQVKLLMIGDSGVGKTCLLLRY-------ANESFSPTFITTIGIDFKIKNVEVD 55
Query: 101 ------SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI----DLQ 150
+W E F + +++V+++ D + +++++W+ I D+
Sbjct: 56 GKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVH 115
Query: 151 KFEILLCIGNKVDLLPGHPVHAEYRRRLLK 180
+IL +GNK D+L V E ++L K
Sbjct: 116 VNKIL--VGNKCDMLDEKVVSTEEGQKLAK 143
>gi|312084876|ref|XP_003144454.1| rab family protein 18 [Loa loa]
gi|307760381|gb|EFO19615.1| Ras-like protein Rab-18 [Loa loa]
Length = 200
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILI+G S VGK +++ R + F E A+ + V ++ +++W E
Sbjct: 13 ILIVGESGVGKSSLMLRFVDDTFDPEIAATIGIDFRVTSMMVDQN--RVKLAIWDTAGQE 70
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDL 164
F + ++ V+++++ T + L HW+ +D + + + +GNK+D+
Sbjct: 71 RFRTLTPSYYRGAQGVICVYDVSNRQTFEKLGHWMNEVDTYSTKMDAVKMLVGNKIDM 128
>gi|21553627|gb|AAM62720.1| putative RAS superfamily GTP-binding protein [Arabidopsis thaliana]
Length = 219
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKY 95
M S D E I+IIG S VGK +LSR F S ++ EL I K
Sbjct: 1 MSSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVELETQNMEIEGKE 60
Query: 96 YTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI 154
A + W E F ++ S + ALV V++++ ST +++ W+ +
Sbjct: 61 VKAQI--WDTACQERFRAVTSAYYRGAVGALV-VYDISRRSTFESVGRWLDELKTHSDTT 117
Query: 155 L--LCIGNKVDLLPGHPVHAEYRRRLLKRE 182
+ + +GNK DL V E + L + E
Sbjct: 118 VARMLVGNKCDLESIRAVSVEEGKALAETE 147
>gi|449431876|ref|XP_004133726.1| PREDICTED: ras-related protein RABD1-like isoform 2 [Cucumis
sativus]
Length = 201
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKV 130
Query: 170 VHAE 173
V +
Sbjct: 131 VDTQ 134
>gi|365758386|gb|EHN00232.1| Vps21p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 209
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +I+ R +S +F + + + + L TIN +T +W E
Sbjct: 10 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--HTVKFEIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLL 165
F+ + A ++V+++ + +HWV + Q + I+ +GNK+D+L
Sbjct: 68 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDVL 125
>gi|281202982|gb|EFA77183.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 199
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY--YTADVSLWMAHLHE 109
I+++G + VGK +IL R F + + N TI K T + LW E
Sbjct: 10 IILVGETAVGKSSILVRFTDNTFTPHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQE 69
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F + +++V+++ D + D ++W+ I+ I++ +GNK D LP
Sbjct: 70 RFKSITQTFYRGSHGVIVVYDITDSKSFDRCRNWIEDINNYSMGGMIMILVGNKSD-LPS 128
Query: 168 HPVHAEYRRRL-----LKREESSADPDFCQSGISET 198
V E + L +K E+SA + + + +T
Sbjct: 129 RKVTYEQGKALADELGIKFLETSAKDNVGVNAVFDT 164
>gi|348515489|ref|XP_003445272.1| PREDICTED: ras-related protein Rab-6A-like isoform 3 [Oreochromis
niloticus]
Length = 179
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 78
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ +L++ W+ + ++ I++ +GNK DL
Sbjct: 79 --RSLIPSYIRDSTIAVV-VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 167 GHPVHAEYRRR 177
V E R
Sbjct: 136 KRQVSVEAAER 146
>gi|347830671|emb|CCD46368.1| similar to ras-related protein ypt1 [Botryotinia fuckeliana]
Length = 226
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERF 95
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ + +V+++ D+ + + +K W+ ID E + L +GNK D+
Sbjct: 96 RTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDM 150
>gi|315055115|ref|XP_003176932.1| vacuolar protein sorting-associated protein 21 [Arthroderma gypseum
CBS 118893]
gi|311338778|gb|EFQ97980.1| vacuolar protein sorting-associated protein 21 [Arthroderma gypseum
CBS 118893]
Length = 274
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGNKLDLTNS 135
Query: 168 HPVHA 172
V A
Sbjct: 136 DGVSA 140
>gi|239607311|gb|EEQ84298.1| GTP-binding protein YPT52 [Ajellomyces dermatitidis ER-3]
Length = 289
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|261200689|ref|XP_002626745.1| GTP-binding protein YPT52 [Ajellomyces dermatitidis SLH14081]
gi|239593817|gb|EEQ76398.1| GTP-binding protein YPT52 [Ajellomyces dermatitidis SLH14081]
Length = 289
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +++ R ++ +F++ + + + L ++ T+ T +W E
Sbjct: 18 LVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTR--TIKFEIWDTAGQE 75
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F+ + A ++V++L S+L KHWV + Q ++ +GNK+DL
Sbjct: 76 RFASLAPMYYRNAQAALVVYDLTKPSSLIKAKHWVAELQRQASPGIVIALVGNKLDL 132
>gi|223996783|ref|XP_002288065.1| at-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
gi|220977181|gb|EED95508.1| at-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
Length = 197
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
+L+IG + VGK ++L R F++ S+ + V +N K +++W E
Sbjct: 24 LLMIGDAGVGKSSMLIRFTDDAFDEHIQSTIGVDFKVKHLELNNK--RIKLTVWDTAGQE 81
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-----ILLCIGNKVDL 164
F + +VMV+++ + D L+ W+ + L + L +GNK+DL
Sbjct: 82 RFRTLTSSYYRGAQGVVMVYDVTRRDSFDNLEQWLKEVKLYSPNNGEGVVKLLVGNKIDL 141
Query: 165 LPGHPVHAEYRRRLLKRE 182
G + Y R++ + E
Sbjct: 142 ADGDG--SGYERQVDRHE 157
>gi|117644864|emb|CAL37898.1| hypothetical protein [synthetic construct]
gi|261859556|dbj|BAI46300.1| alpha- and gamma-adaptin binding protein [synthetic construct]
Length = 315
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTRKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EW +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWSLKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|397626807|gb|EJK68249.1| hypothetical protein THAOC_10589 [Thalassiosira oceanica]
Length = 231
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++L R + ++ S+ + TI T + +W E F
Sbjct: 40 LLLIGDSGVGKSSLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 99
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 100 RTITSSYYRGAHGIIVVYDVTDNESFNNVKQWLHEIDRYAAENVNKLLVGNKCDL 154
>gi|310790093|gb|EFQ25626.1| Ras family protein [Glomerella graminicola M1.001]
Length = 221
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +I+ R + F+ +S TI + T +SL
Sbjct: 23 LVLLGESAVGKSSIVLRFVKDQFDSYRES---------TIGAAFLTQTISLDENTTVKFE 73
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ ++LD K WV + Q E I+ G
Sbjct: 74 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQANENIIIALAG 133
Query: 160 NKVDLLPGHP 169
NK+DL+ P
Sbjct: 134 NKLDLVTEQP 143
>gi|296413464|ref|XP_002836433.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630252|emb|CAZ80624.1| unnamed protein product [Tuber melanosporum]
Length = 218
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +++ R + F+D +S TI + T ++L
Sbjct: 18 LVLLGESAVGKSSLVLRFVKDQFDDYRES---------TIGAAFLTQTIALDETTTIKFE 68
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ S+LD K WV + Q E ++ G
Sbjct: 69 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIVIALAG 128
Query: 160 NKVDL-LP-GHP 169
NK+DL LP G P
Sbjct: 129 NKLDLALPTGSP 140
>gi|261330482|emb|CBH13466.1| Rab11A GTPase [Trypanosoma brucei gambiense DAL972]
Length = 216
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++I+G S VGK +++R + F + ++ + +I + A V +W E F
Sbjct: 10 VVIVGDSGVGKSNLMTRYTADEFSQDTPATIGVEFMTKSIKIEGRDAKVQIWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC----IGNKVDL 164
S I ++V+++ + ++ D++ W+ +L+ F C IG+K DL
Sbjct: 70 RAISRSIYHGAKGAMLVYDITNQTSFDSISTWLQ--ELRAFVPATCSIFLIGSKCDL 124
>gi|389632835|ref|XP_003714070.1| GTP-binding protein ypt5 [Magnaporthe oryzae 70-15]
gi|351646403|gb|EHA54263.1| GTP-binding protein ypt5 [Magnaporthe oryzae 70-15]
Length = 221
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--------- 102
++++G S VGK +I+ R + F+ +S TI + T +SL
Sbjct: 22 LVLLGESAVGKSSIVLRFVKDQFDSYRES---------TIGAAFLTQTISLDENTTVKFE 72
Query: 103 -WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIG 159
W E + + V+V+++ ++LD K WV + Q E I+ G
Sbjct: 73 IWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQANENIIIALAG 132
Query: 160 NKVDLLPGHP 169
NK+DL+ P
Sbjct: 133 NKLDLVTEQP 142
>gi|121717600|ref|XP_001276098.1| rab15, 13, 10, 1, 35, 5, and [Aspergillus clavatus NRRL 1]
gi|119404296|gb|EAW14672.1| rab15, 13, 10, 1, 35, 5, and [Aspergillus clavatus NRRL 1]
Length = 207
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 17 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERF 76
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ + +V+++ D+ + + +K W+ ID E + L +GNK D+
Sbjct: 77 RTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDM 131
>gi|148235747|ref|NP_001086086.1| RASD family, member 2 [Xenopus laevis]
gi|49257586|gb|AAH74172.1| MGC81985 protein [Xenopus laevis]
Length = 266
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 21/151 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNG-WTINTKYYTADVSLWMAHLHEE 110
++++G+S VGK I++R L+ FED + E + I Y D+ L + H
Sbjct: 22 MVVLGASKVGKSAIVARFLNGRFEDQYTPTIEDFHRKLYNIRGDMYQLDI-LDTSGNHPF 80
Query: 111 FSIRSLPISDQLTA--LVMVFNLNDLSTLDALKHWVPSI------------DLQKFEILL 156
++R L I LT ++VF++++ + D +K I + +F +++
Sbjct: 81 PAMRRLSI---LTGDVFILVFSIDNRDSFDEVKRLRKQILEVKSCVKNKTKETGEFPMMI 137
Query: 157 CIGNKVDLLPGH-PVHAEYRRRLLKREESSA 186
C GNK D H V AE RL+ +E+ A
Sbjct: 138 C-GNKSDYGEHHRKVRAEEAERLVSGDENCA 167
>gi|302687144|ref|XP_003033252.1| hypothetical protein SCHCODRAFT_84960 [Schizophyllum commune H4-8]
gi|300106946|gb|EFI98349.1| hypothetical protein SCHCODRAFT_84960 [Schizophyllum commune H4-8]
Length = 224
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI+ + T S+W EF
Sbjct: 41 MVGDSQIGKTSLMVKYVEGSFDE--DYIQTLGVNFMEKTISVRRTTITFSIWDLGGQREF 98
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 99 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKYDQFATLP 157
>gi|359806090|ref|NP_001241441.1| uncharacterized protein LOC100794330 [Glycine max]
gi|255645015|gb|ACU23007.1| unknown [Glycine max]
Length = 214
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEE 110
+L+IG S VGK T+L S FED S + + V TI K +++W E
Sbjct: 19 LLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTIGGK--KLKLAIWDTAGQER 76
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKH-WVPSIDLQKFE---ILLCIGNKVD 163
F + ++MV+++ T L W IDL I + +GNKVD
Sbjct: 77 FRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVD 133
>gi|302692268|ref|XP_003035813.1| small GTP-binding protein [Schizophyllum commune H4-8]
gi|300109509|gb|EFJ00911.1| small GTP-binding protein [Schizophyllum commune H4-8]
Length = 203
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D T +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDNDTFTNVKQWLQEIDRYASEGVNKLLVGNKSDL 125
>gi|123475948|ref|XP_001321149.1| Ras family protein [Trichomonas vaginalis G3]
gi|121903969|gb|EAY08926.1| Ras family protein [Trichomonas vaginalis G3]
Length = 207
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 23/125 (18%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY----------TADVS 101
++++G+S VGK T+++R ED D SS+ TI Y T ++
Sbjct: 8 VVLLGNSAVGKTTLVTRWT----EDRYDGSSQP-----TIGAAYKSVTLEFDDGKTYSMN 58
Query: 102 LWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIG 159
+W +E+ S S+ D A++ VF+L D S+ +AL W+ ++ +K ++ + +G
Sbjct: 59 IWDTAGQDEYRSTTSIYCRDAKAAMI-VFDLTDRSSFEALDSWISTLS-EKVDVPFVIVG 116
Query: 160 NKVDL 164
NK D+
Sbjct: 117 NKSDI 121
>gi|17509233|ref|NP_491857.1| Protein RAB-10 [Caenorhabditis elegans]
gi|351062741|emb|CCD70773.1| Protein RAB-10 [Caenorhabditis elegans]
Length = 201
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 46 LEKRP-----GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADV 100
+ +RP +L+IG S VGK IL R F S+ + TI K +
Sbjct: 1 MARRPYDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKL 60
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCI 158
+W E F + +++V+++ + + D + W+ +ID E + + +
Sbjct: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMIL 120
Query: 159 GNKVDL 164
GNK D+
Sbjct: 121 GNKCDM 126
>gi|449545643|gb|EMD36614.1| septum-promoting GTP-binding protein 1 [Ceriporiopsis subvermispora
B]
Length = 226
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW--TINTKYYTADVSLWMAHLHEEF 111
++G S +GK +++ + + +F++ D L VN TI + + SLW EF
Sbjct: 43 MLGDSQIGKTSLMVKYVEGHFDE--DYIQTLGVNFMEKTITVRRTSITFSLWDLGGQREF 100
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHP 169
+ LP + + A++ +F+L+ STL+++K W + K I IG K D P
Sbjct: 101 -VNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDTFATFP 159
>gi|388582980|gb|EIM23283.1| hypothetical protein WALSEDRAFT_15609 [Wallemia sebi CBS 633.66]
Length = 202
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF---EDASDS-SSELLVNGWTINTKYYTADVSLW---M 104
+L+IG+S+VGK ++L R +F EDA+ + + V I K Y +S+W
Sbjct: 22 LLLIGNSSVGKSSLLLRFTENDFLPEEDANATIGVDFKVKYIQIKDKRY--KLSIWCVFA 79
Query: 105 AHLHEEFS------IRSLPISDQLTA--LVMVFNLNDLSTLDALKHWVPSIDLQKFE--I 154
H H F+ RSL S A +++V+++ + T D L+ W +D + +
Sbjct: 80 THTHANFNTAGQERFRSLVSSYYRGAQGVILVYDVTNRETFDKLRVWFQELDTYSTDDAV 139
Query: 155 LLCIGNKVDLLPGHPVHAEYRRRL 178
+ +GNK D+ V E + L
Sbjct: 140 KIVVGNKTDVNHQRAVSIEEAKEL 163
>gi|388506692|gb|AFK41412.1| unknown [Medicago truncatula]
Length = 202
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLSDKKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|313215908|emb|CBY37318.1| unnamed protein product [Oikopleura dioica]
Length = 478
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M +TD + ++ ++ +G +VGK ++++R + +F++ ++ + T+ + T
Sbjct: 1 MAATDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 60
Query: 98 ADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ LW E F RSL I D T V+V+++ ++++ + W+ + ++
Sbjct: 61 VRLQLWDTAGQERF--RSLIPSYIRDS-TVAVVVYDVTNINSFNQTNKWIDDVRTERGTD 117
Query: 154 -ILLCIGNKVDLLPGHPV 170
I++ +GNK DL V
Sbjct: 118 VIIVLVGNKTDLADKRQV 135
>gi|123477457|ref|XP_001321896.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121904731|gb|EAY09673.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 190
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--WMAHLHE 109
++++G S VGK T ++ + ++N +D++ + N T++ +Y + D+ L W E
Sbjct: 5 VILLGDSTVGK-TCIANVANLNIF-PTDANPTVGANVLTLSYQYGSTDIKLTIWDTAGQE 62
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPG 167
++ + + V+++++ D + +++ +W+ S+ +L IL +GNK DL
Sbjct: 63 KYRCLAPMYYRNINCAVIIYSILDRKSFESVDYWLDSLQRELVSMPILYLVGNKTDLAEH 122
Query: 168 HPVHAE 173
V E
Sbjct: 123 REVREE 128
>gi|115434888|ref|NP_001042202.1| Os01g0179700 [Oryza sativa Japonica Group]
gi|113531733|dbj|BAF04116.1| Os01g0179700 [Oryza sativa Japonica Group]
gi|125524668|gb|EAY72782.1| hypothetical protein OsI_00645 [Oryza sativa Indica Group]
gi|125569264|gb|EAZ10779.1| hypothetical protein OsJ_00614 [Oryza sativa Japonica Group]
gi|215697672|dbj|BAG91666.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765495|dbj|BAG87192.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|12052949|emb|CAB66649.1| hypothetical protein [Homo sapiens]
gi|117645646|emb|CAL38289.1| hypothetical protein [synthetic construct]
Length = 315
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLV-TAEIAESVQAFVVYFDSTRKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EW +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWSLKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>gi|443723889|gb|ELU12108.1| hypothetical protein CAPTEDRAFT_157234 [Capitella teleta]
Length = 212
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG + VGK ++ R + F + ++ + TIN + +W E F
Sbjct: 19 IVLIGDAGVGKTCVVQRFKTGTFLERQGNTIGVDFTMKTINLDGNKVKLQVWDTAGQERF 78
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ A++M +++ L + + + W+ D++K+ + L IGNK DL
Sbjct: 79 RTITQSYYRSANAVIMAYDITKLQSFENCQRWLD--DVKKYAAASIVKLLIGNKNDLETQ 136
Query: 168 HPVHAEYRRRL 178
V R+
Sbjct: 137 REVKFSSARQF 147
>gi|351725923|ref|NP_001237621.1| uncharacterized protein LOC100499898 [Glycine max]
gi|255627505|gb|ACU14097.1| unknown [Glycine max]
Length = 201
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ ++ + + +K W+ ID + + L +GNK DL+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVDNKV 130
Query: 170 VHA 172
V +
Sbjct: 131 VDS 133
>gi|217071342|gb|ACJ84031.1| unknown [Medicago truncatula]
Length = 202
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLSDKKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|402904632|ref|XP_003915146.1| PREDICTED: ras-related protein Rab-8A isoform 2 [Papio anubis]
gi|426387631|ref|XP_004060267.1| PREDICTED: ras-related protein Rab-8A isoform 2 [Gorilla gorilla
gorilla]
Length = 207
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F S+ + TI + +W E F
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGNKVDLL 165
+ +++V+++ + + D +++W+ +I D++K + +GNK D+
Sbjct: 71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK----MILGNKCDVN 126
Query: 166 PGHPVHAEYRRRL-----LKREESSADPDFCQSGISETEGSSLLGDEEPSWE 212
V E +L +K E+SA + +++ +G ++P E
Sbjct: 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENRHQSKNGQKIGRQQPPGE 178
>gi|313239407|emb|CBY14345.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M +TD + ++ ++ +G +VGK ++++R + +F++ ++ + T+ + T
Sbjct: 1 MAATDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 60
Query: 98 ADVSLWMAHLHEEFSIRSL-P--ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ LW E F RSL P I D A+V V+++ ++++ + W+ + ++
Sbjct: 61 VRLQLWDTAGQERF--RSLIPSYIRDSTVAVV-VYDVTNINSFNQTNKWIDDVRTERGTD 117
Query: 154 -ILLCIGNKVDL 164
I++ +GNK DL
Sbjct: 118 VIIVLVGNKTDL 129
>gi|255728925|ref|XP_002549388.1| GTP-binding protein ypt5 [Candida tropicalis MYA-3404]
gi|240133704|gb|EER33260.1| GTP-binding protein ypt5 [Candida tropicalis MYA-3404]
Length = 207
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G S VGK +I+ R + +F+D +S+ + L TI T +W E
Sbjct: 15 LVLLGESAVGKSSIVHRFVKNSFDDLRESTIGAAFLTQSITIPETQTTIKFEIWDTAGQE 74
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDL 164
+ + A ++V+++ S+L K W+ + I+ +GNK+DL
Sbjct: 75 RYKSLAPMYYRNSHAAIVVYDITKTSSLQRAKDWIEELRKNSSNDGIIIALVGNKLDL 132
>gi|294879180|ref|XP_002768586.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239871257|gb|EER01304.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL++G S VGK ++L R F+ + + T++ + + +W E F
Sbjct: 32 ILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTLDIQERKIRLQIWDTAGQERF 91
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++++++ DL + + +WV ++D + + L +GNK D+
Sbjct: 92 RTITPAYYRNAMGVLLIYDMTDLKSFKNVDYWVRNLDQHADKTVQKLLVGNKADMAAKRK 151
Query: 170 VHAE 173
V E
Sbjct: 152 VSTE 155
>gi|126323469|ref|XP_001362786.1| PREDICTED: ras-related protein Rab-3A-like [Monodelphis domestica]
Length = 220
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG+S+VGK + L R +F A S+ + TI + +W E +
Sbjct: 25 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNEKRIKLQIWDTAGQERY 84
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++++++ + + +A++ W I ++ +L +GNK D+
Sbjct: 85 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 144
Query: 170 VHAEYRRRL 178
V +E R+L
Sbjct: 145 VSSERGRQL 153
>gi|410947692|ref|XP_003980577.1| PREDICTED: ras-related protein Rab-20 [Felis catus]
Length = 234
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I+++G NVGK ++L R + F D + V G ++ + ++S+W E+F
Sbjct: 8 IVLLGDMNVGKTSLLQRYMERRFPDTVST-----VGGAFYLKQWRSYNISIWDTAGREQF 62
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCI-GNKVDLL 165
TA+++++++N +L L+ ++ D + L I GNKVDL+
Sbjct: 63 HGLGSMYCRGATAVILIYDVNHPQSLLELEDRFLGLTDTASTDCLFAIVGNKVDLV 118
>gi|297599697|ref|NP_001047606.2| Os02g0653800 [Oryza sativa Japonica Group]
gi|14140133|emb|CAC39050.1| putative GTP-binding protein [Oryza sativa]
gi|49387522|dbj|BAD24987.1| putative GTP-binding protein YPTM2 [Oryza sativa Japonica Group]
gi|215769313|dbj|BAH01542.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623360|gb|EEE57492.1| hypothetical protein OsJ_07768 [Oryza sativa Japonica Group]
gi|255671140|dbj|BAF09520.2| Os02g0653800 [Oryza sativa Japonica Group]
Length = 203
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKV 130
Query: 170 VHAE 173
V +E
Sbjct: 131 VSSE 134
>gi|403339931|gb|EJY69227.1| Rab11A, RAB family GTPase [Oxytricha trifallax]
Length = 231
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLS--VNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG S VGK +LSR N E + E +++ + V +W E
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNLESKATIGVEFATKSFSLENG-QSVKVQIWDTAGQE 74
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLL 165
+ + ++V+++ + T +++ W+ +L ++ ++L +GNK DL
Sbjct: 75 RYRAITNTYYRGAVGALLVYDITKMKTFESVDRWLQ--ELHQYAESGIVILLVGNKTDL- 131
Query: 166 PGHPVHAEYRRRLLKREESS 185
++ R +KREE++
Sbjct: 132 --------HKLREVKREEAA 143
>gi|7643790|gb|AAF65510.1| small GTP-binding protein [Capsicum annuum]
Length = 203
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDQESFNNVKQWLSEIDRYASENVNKLLVGNKSDL 125
>gi|321463697|gb|EFX74711.1| hypothetical protein DAPPUDRAFT_307006 [Daphnia pulex]
Length = 280
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 71/194 (36%), Gaps = 64/194 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
W I+ KYY D S+ + + + S+ + A ++ FN + + L + W+P
Sbjct: 43 WDISNKYY--DASIHFCQMTSKMVVDE-DFSENVNASIIFFNSLEENGLKKAEEWIPF-- 97
Query: 149 LQKFE----ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204
L +F+ IL+C D C +
Sbjct: 98 LNEFDLGVKILVC-------------------------------DQCST----------- 115
Query: 205 GDEEPSWEIRRSCLEWCTEHRIEYIE-----ACASNVDFDKCLSIDGDSQGVERLYGALS 259
DE + S +WC H E +E + DF + L G +R+ AL
Sbjct: 116 -DENSKHTSKISAQQWCIRHGFELVELDPLEKSDPDDDFPETL-------GTDRIIQALH 167
Query: 260 AHMWPGMVLKSGDK 273
AH WP + LKSG+K
Sbjct: 168 AHSWPNLELKSGEK 181
>gi|167832330|dbj|BAG09235.1| plant-unique Rab5 homolog [Physcomitrella patens subsp. patens]
Length = 226
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108
R ++++G S VGK IL R + F+ +S + TIN + T +W
Sbjct: 32 RIKLVLLGDSGVGKSCILLRFVRGQFDPSSKVTVGASFLSQTINLQDSTIKFEIWDTAGQ 91
Query: 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDL 164
E +S + +A V+V+++ + T + WV +LQK ++ +GNK DL
Sbjct: 92 ERYSSLAPLYYRGASAAVVVYDITNPETFLKAQFWVK--ELQKHGNPDIVMALVGNKADL 149
>gi|443716621|gb|ELU08055.1| hypothetical protein CAPTEDRAFT_163376 [Capitella teleta]
Length = 216
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G VGK ++L R + F D ++ + +N ++++W E F
Sbjct: 11 VVLLGEGAVGKTSLLLRFVENKFNDKHLTTLQASFLNKKMNIGGKRVNLAIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF---EILLCI-GNKVDL 164
V+V+++ D + +K+WV +L+K EI LCI GNKVDL
Sbjct: 71 HALGPIYYRDSNGAVLVYDITDEDSFLKVKNWVK--ELRKMLGNEISLCIVGNKVDL 125
>gi|395814868|ref|XP_003780961.1| PREDICTED: ras-related protein Rab-6A isoform 2 [Otolemur
garnettii]
Length = 208
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>gi|395513171|ref|XP_003760803.1| PREDICTED: ras-related protein Rab-3A [Sarcophilus harrisii]
Length = 359
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG+S+VGK + L R +F A S+ + TI + +W E +
Sbjct: 164 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNEKRIKLQIWDTAGQERY 223
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++++++ + + +A++ W I ++ +L +GNK D+
Sbjct: 224 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 283
Query: 170 VHAEYRRRL 178
V +E R+L
Sbjct: 284 VSSERGRQL 292
>gi|320167737|gb|EFW44636.1| RAB1 [Capsaspora owczarzaki ATCC 30864]
Length = 205
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLQEIDRYASETVNKLLVGNKSDL 125
>gi|300121531|emb|CBK22050.2| unnamed protein product [Blastocystis hominis]
Length = 298
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
+R + +G + GK +I++R + +F+ S+ + TI + LW
Sbjct: 67 ERYKFVFLGDAGTGKTSIITRFIYDSFDPTYQSTIGIDFLSKTILYNNRPIRMQLWDTAG 126
Query: 108 HEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCI-GNKVDLL 165
E F S+ I D A V+V++++ S+ D + WV + Q+ E++L I GNK DL
Sbjct: 127 QERFQSLIPSYIRDSSVA-VIVYDISSRSSFDNVMKWVRDVRDQRDEVILVIVGNKTDLS 185
Query: 166 PGHPVHAE 173
V E
Sbjct: 186 DSRAVTIE 193
>gi|299753665|ref|XP_001833414.2| GTP-binding protein ypt1 [Coprinopsis cinerea okayama7#130]
gi|298410405|gb|EAU88348.2| GTP-binding protein ypt1 [Coprinopsis cinerea okayama7#130]
Length = 204
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D T +K W+ ID E + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDNDTFSNVKQWLSEIDRYASEGVNKLLVGNKSDL 126
>gi|256082667|ref|XP_002577575.1| rabb and C [Schistosoma mansoni]
gi|353233332|emb|CCD80687.1| putative rabb and C [Schistosoma mansoni]
Length = 287
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L++G+S VGK +I+ L+ F + S+ + + + + + +W E++
Sbjct: 84 VLLLGNSGVGKTSIIRALVGETFYQTTISTIGIDLIKRIFTVENHRVQLEVWDTAGQEQY 143
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDAL-KHWVPSIDLQKFEI--LLCIGNKVDLLPG 167
SI SL + ++V+++ D+ + + + K+W+ S+D E + + NK+D++
Sbjct: 144 HSIVSLHFRE-AKCFIIVYDVTDMESFEQIRKYWLRSVDEHMDEAVPVFFVANKIDMIKD 202
Query: 168 HPVHAEYRRRLLKREES 184
V E ++L ++ +
Sbjct: 203 KKVSTEQGQQLTSQQAA 219
>gi|294657272|ref|XP_459580.2| DEHA2E05918p [Debaryomyces hansenii CBS767]
gi|199432566|emb|CAG87807.2| DEHA2E05918p [Debaryomyces hansenii CBS767]
Length = 204
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY----T 97
D++++ ++ I+ +G +VGK ++++R + F+D ++ + + T Y T
Sbjct: 2 DKSNILRKYKIVFLGDQSVGKTSLITRFMYDTFDDQYAATIGI---DFLSKTMYLEDNKT 58
Query: 98 ADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ LW E F RSL I D A V+ +++ + + + L W+ + L++ +
Sbjct: 59 IRLQLWDTAGQERF--RSLIPSYIRDSHVA-VICYDITNKKSFENLNKWIQDVKLERGDD 115
Query: 154 -ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC 191
I++ +GNK DL V E LK S + FC
Sbjct: 116 VIIVVVGNKSDLNNKRQVTMEECEAYLK----SINGKFC 150
>gi|55742328|ref|NP_001007162.1| ras-related protein Rab-1A [Danio rerio]
gi|29571131|gb|AAH50239.1| RAB1A, member RAS oncogene family [Danio rerio]
gi|38541759|gb|AAH62857.1| RAB1A, member RAS oncogene family [Danio rerio]
gi|182889992|gb|AAI65910.1| Rab1a protein [Danio rerio]
Length = 201
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 125
>gi|393910638|gb|EJD75978.1| Ras-like protein [Loa loa]
Length = 207
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
K+ ++ +G +VGK ++++R + +F++ ++ + T+ + T + LW
Sbjct: 10 KKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 108 HEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E F RSL I D A+V V+++ + ++ W+ + ++ I++ +GNK
Sbjct: 70 QERF--RSLIPSYIRDSTVAVV-VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 126
Query: 163 DLLPGHPVHAEYRRRLLK 180
DL V E R K
Sbjct: 127 DLADKRQVSTEEGERKAK 144
>gi|357135226|ref|XP_003569212.1| PREDICTED: ras-related protein RIC1-like [Brachypodium distachyon]
Length = 203
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAESRV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSYEAGKAL 139
>gi|291241698|ref|XP_002740749.1| PREDICTED: RAB33B, member of RAS oncogene family-like [Saccoglossus
kowalevskii]
Length = 251
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R F + ++++ + T++ T + LW E F
Sbjct: 33 IIVIGDSNVGKTCLTFRFCGGKFPEKTEATIGVDFREKTVDVNGETIKLQLWDTAGQERF 92
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDL 164
+ + A+V V+++ ++T + + W+ + + +GNK D+
Sbjct: 93 RKSMVQHYYRNVHAVVFVYDMTKMNTFEGMPTWIEECERHSLSPDIPRILVGNKCDM 149
>gi|291384296|ref|XP_002708751.1| PREDICTED: RAB6A, member RAS oncogene family-like isoform 2
[Oryctolagus cuniculus]
gi|301759055|ref|XP_002915364.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Ailuropoda
melanoleuca]
gi|332211361|ref|XP_003254788.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Nomascus
leucogenys]
gi|426245107|ref|XP_004016355.1| PREDICTED: ras-related protein Rab-6A [Ovis aries]
gi|296479823|tpg|DAA21938.1| TPA: RAB6A, member RAS oncogene family-like isoform 2 [Bos taurus]
gi|355566853|gb|EHH23232.1| hypothetical protein EGK_06662 [Macaca mulatta]
gi|355752448|gb|EHH56568.1| hypothetical protein EGM_06013 [Macaca fascicularis]
gi|380788413|gb|AFE66082.1| ras-related protein Rab-6A isoform b [Macaca mulatta]
gi|380788417|gb|AFE66084.1| ras-related protein Rab-6A isoform b [Macaca mulatta]
Length = 208
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>gi|443895663|dbj|GAC73008.1| GTPase Rab18 [Pseudozyma antarctica T-34]
Length = 233
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVN----GWTINTKYYTADVSLWMAHL 107
IL+IG+S+VGK ++L R F ++++ + V+ G + K + +S+W
Sbjct: 12 ILLIGASSVGKSSLLLRFTDDEFLSPEETTATIGVDYRIKGIEVGGKRF--KLSIWDTAG 69
Query: 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-----ILLCIGNKV 162
E F + +++ +++ T DAL W +L+ F + + +GNKV
Sbjct: 70 QERFRTLTSSYYRGAQGVIIAYDVTQRDTFDALPTWFN--ELETFTTSEDVVKIIVGNKV 127
Query: 163 D 163
D
Sbjct: 128 D 128
>gi|429852674|gb|ELA27799.1| rab GTPase [Colletotrichum gloeosporioides Nara gc5]
Length = 221
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEE 110
++++G S VGK +I+ R + F+ +S+ TI+ + T +W E
Sbjct: 23 LVLLGESAVGKSSIVLRFVKDQFDSYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQER 82
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGH 168
+ + V+V+++ ++LD K WV + Q E I+ GNK+DL+
Sbjct: 83 YKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQANENIIIALAGNKLDLVNEQ 142
Query: 169 P 169
P
Sbjct: 143 P 143
>gi|83751822|gb|ABC42924.1| GTP-binding protein [Anas platyrhynchos]
Length = 208
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>gi|318270757|ref|NP_001188141.1| ras-related protein Rab-4B [Ictalurus punctatus]
gi|308323203|gb|ADO28738.1| ras-related protein rab-4b [Ictalurus punctatus]
Length = 213
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + +N T + +W E F
Sbjct: 11 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ ++ I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILC-GNKKDL 125
>gi|298707797|emb|CBJ30228.1| Rab1B, RAB family GTPase [Ectocarpus siliculosus]
Length = 203
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRA 130
Query: 170 VHAE 173
V E
Sbjct: 131 VTTE 134
>gi|443716906|gb|ELU08199.1| hypothetical protein CAPTEDRAFT_3285 [Capitella teleta]
Length = 209
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R F + ++++ + ++ + LW E F
Sbjct: 31 IIVIGDSNVGKTCLTFRFCGGKFPEKTEATIGVDFREKSVEINKELVKLQLWDTAGQERF 90
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF--EI-LLCIGNKVDL 164
+ + A+V V+++ +S+ + L HW+ D E+ + +GNK D+
Sbjct: 91 RKSMVQHYYRNVHAVVFVYDVTKVSSFENLPHWIGECDRHNLTSEVPRILVGNKCDM 147
>gi|38679888|ref|NP_942599.1| ras-related protein Rab-6A isoform b [Homo sapiens]
gi|197102660|ref|NP_001125644.1| ras-related protein Rab-6A [Pongo abelii]
gi|397487240|ref|XP_003814713.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Pan paniscus]
gi|131796|sp|P20340.3|RAB6A_HUMAN RecName: Full=Ras-related protein Rab-6A; Short=Rab-6
gi|75055038|sp|Q5RAV6.3|RAB6A_PONAB RecName: Full=Ras-related protein Rab-6A
gi|4585565|gb|AAD25535.1|AF130986_1 RAS-related protein RAB6 [Homo sapiens]
gi|20379054|gb|AAM21087.1|AF498939_1 small GTP binding protein RAB6A [Homo sapiens]
gi|550072|gb|AAA60246.1| GTP-binding protein [Homo sapiens]
gi|54696264|gb|AAV38504.1| RAB6A, member RAS oncogene family [Homo sapiens]
gi|55728729|emb|CAH91104.1| hypothetical protein [Pongo abelii]
gi|61356023|gb|AAX41200.1| RAB6A member RAS oncogene family [synthetic construct]
gi|66911837|gb|AAH96818.1| RAB6A, member RAS oncogene family [Homo sapiens]
gi|119595313|gb|EAW74907.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595314|gb|EAW74908.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595316|gb|EAW74910.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595318|gb|EAW74912.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|158260519|dbj|BAF82437.1| unnamed protein product [Homo sapiens]
gi|158261287|dbj|BAF82821.1| unnamed protein product [Homo sapiens]
gi|190692045|gb|ACE87797.1| RAB6A, member RAS oncogene family protein [synthetic construct]
gi|254071271|gb|ACT64395.1| RAB6A, member RAS oncogene family protein [synthetic construct]
gi|261860502|dbj|BAI46773.1| RAB6A, member RAS oncogene family [synthetic construct]
Length = 208
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>gi|410909864|ref|XP_003968410.1| PREDICTED: ras-related protein Rab-4B-like [Takifugu rubripes]
Length = 213
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + +N T + +W E F
Sbjct: 11 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ ++ I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILC-GNKKDL 125
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,470,286,293
Number of Sequences: 23463169
Number of extensions: 180785655
Number of successful extensions: 496540
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 2980
Number of HSP's that attempted gapping in prelim test: 495273
Number of HSP's gapped (non-prelim): 3260
length of query: 289
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 148
effective length of database: 9,050,888,538
effective search space: 1339531503624
effective search space used: 1339531503624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)