BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040295
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + D+ S+ + TI+ + T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + D +K W+ ID E + L +GNK DL+
Sbjct: 72 RTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRV 131
Query: 170 VHAEYRRRL 178
V ++ R L
Sbjct: 132 VTSDEGREL 140
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +I+ R +S +F + + + + L TIN +T +W E
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--HTVKFEIWDTAGQE 63
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ + +HWV + Q + I+ +GNK+D L
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ- 122
Query: 168 HPVHAEYRRRLLKREES 184
E R + REE
Sbjct: 123 -----EGGERKVAREEG 134
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 13 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 73 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 127
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 14 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 74 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 128
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 96 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 28 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 87
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 88 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 78
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 79 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 5 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 64
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D T V+V+++ +L++ W+ + ++ I++ +GNK DL
Sbjct: 65 --RSLIPSYIRDS-TVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 121
Query: 167 GHPVHAE 173
+ E
Sbjct: 122 KRQITIE 128
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 11 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 125
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 19 LLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 78
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 79 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + F + ++ + T++ + LW E F
Sbjct: 10 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 69
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ +++V+++ D T +K W +++ + LL +GNK D+
Sbjct: 70 RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 124
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + F + ++ + T++ + LW E F
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ +++V+++ D T +K W +++ + LL +GNK D+
Sbjct: 83 RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M S D + ++ ++ +G +VGK ++++R + +F++ ++ + T+ + T
Sbjct: 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62
Query: 98 ADVSLWMAHLHEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE- 153
+ LW E F RSL I D A+V V+++ + ++ W+ + ++
Sbjct: 63 VRLQLWDTAGQERF--RSLIPSYIRDSTVAVV-VYDITNTNSFHQTSKWIDDVRTERGSD 119
Query: 154 -ILLCIGNKVDLLPGHPVHAEYRRRLLK 180
I++ +GNK DL V E R K
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAK 147
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 2 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 61
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 62 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 121
Query: 170 V 170
V
Sbjct: 122 V 122
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 9 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 69 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 128
Query: 170 V 170
V
Sbjct: 129 V 129
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 9 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 69 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 128
Query: 170 V 170
V
Sbjct: 129 V 129
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + +N T + +W E F
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 87
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDLLPGH 168
+ ++V+++ T ++L W+ ++ ++LC GNK DL P
Sbjct: 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC-GNKKDLDPER 146
Query: 169 PV 170
V
Sbjct: 147 EV 148
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 4 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 63
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D T V+V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 64 --RSLIPSYIRDS-TVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 167 GHPVHAE 173
V E
Sbjct: 121 KRQVSIE 127
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG+S+VGK + L R +F A S+ + TI + +W E +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++++++ + + +A++ W I ++ +L +GNK D+
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 127
Query: 170 VHAEYRRRL 178
V +E R+L
Sbjct: 128 VSSERGRQL 136
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + F + ++ + T++ + +W E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ +++V+++ D T +K W +++ + LL +GNK D+
Sbjct: 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + F + ++ + T++ + LW E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ +++V+++ D T +K W +++ + LL +GNK D
Sbjct: 66 RTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 9 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 68
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 69 --RSLIPSYIRDSAAAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 126 KRQVSIEEGERKAK 139
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSAAAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 79 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 136 KRQVSIEEGERKAK 149
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL 107
++ ++ +G +VGK ++++R + +F++ ++ + T+ + T + LW
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 108 HEEFSIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKV 162
E F RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK
Sbjct: 65 LERF--RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 163 DLLPGHPVHAEYRRRLLK 180
DL V E R K
Sbjct: 122 DLADKRQVSIEEGERKAK 139
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R + F + ++ + T++ + +W E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVD 163
+ +++V+++ D T +K W +++ + LL +GNK D
Sbjct: 66 RTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G ++VGK ++ R + F + S+ + T+ + + +W E F
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF 91
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDL 164
+ ++ +++ S+ ++ HW+ D++K+ + L IGNK DL
Sbjct: 92 RTITQSYYRSANGAILAYDITKRSSFLSVPHWIE--DVRKYAGSNIVQLLIGNKSDL 146
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
R S + I++IG SNVGK + R + F D ++++ + ++ + L
Sbjct: 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73
Query: 103 WMAHLHEEFSIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCI 158
W E F + + A+V V+++ ++++ +L W+ L + +
Sbjct: 74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133
Query: 159 GNKVDL 164
GNK DL
Sbjct: 134 GNKCDL 139
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG+S VGK +L R + + S+ + T+ T + +W E F
Sbjct: 24 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 83
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID + L +GNK DL
Sbjct: 84 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + +K W+ ID E + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG+S+VGK + L R +F A S+ + T+ + +W E +
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++++++ + + A++ W I ++ ++ +GNK DL
Sbjct: 85 RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERV 144
Query: 170 VHAEYRRRL 178
V AE RRL
Sbjct: 145 VPAEDGRRL 153
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + +K W+ ID E + L +GNK DL
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG+S VGK +L R + + S+ + T+ T + +W E F
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID + L +GNK DL
Sbjct: 71 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG+S VGK +L R + + S+ + T+ T + +W E F
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID + L +GNK DL
Sbjct: 71 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK +++ R + F + +S+ T+ T +W E +
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ A ++VF++ + ++ + K WV + Q ++ GNK DLL
Sbjct: 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK 134
Query: 170 VHAE 173
V AE
Sbjct: 135 VTAE 138
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F S+ + TI + +W E F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGNKVDLL 165
+ +++V+++ + + D +++W+ +I D++K + +GNK D+
Sbjct: 69 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK----MILGNKCDVN 124
Query: 166 PGHPVHAEYRRRL-----LKREESSADPD 189
V E +L +K E+SA +
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKAN 153
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG+S+VGK + L R +F A S+ + TI + +W E +
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHP 169
+ ++ +++ + + +A++ W I ++ +L +GNK D
Sbjct: 71 RTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERV 130
Query: 170 VHAEYRRRL 178
V +E R+L
Sbjct: 131 VSSERGRQL 139
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
ILIIG S VGK ++L R F+ ++ + TI+ A +++W E F
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVH 171
+ +++V+++ T L +W L + E + V+ L G+ +
Sbjct: 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW-----LNELETYCTRNDIVNXLVGNKID 132
Query: 172 AEYR 175
E R
Sbjct: 133 KENR 136
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R F S+ + TI + +W E F
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI------DLQKFEILLCIGNKVDLL 165
+ +++V+++ + + D +++W+ +I D++K + +GNK D+
Sbjct: 71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK----MILGNKCDVN 126
Query: 166 PGHPVHAEYRRRL-----LKREESSADPD 189
V E +L +K E+SA +
Sbjct: 127 DKRQVSKERGEKLALDYGIKFMETSAKAN 155
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +G K DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHLHEE 110
+++IG S VGK +LSR F S ++ + + T+ +W A L
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGH 168
+I S + AL +VF+L T ++ W+ + + +++ +GNK DL
Sbjct: 88 RAITSAYYRGAVGAL-LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 146
Query: 169 PVHAEYRR 176
V E R
Sbjct: 147 EVPTEEAR 154
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 5/133 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL--WMAHLHE 109
++++G+ VGK +++ R F D + V+ + DV L W E
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI-LLCIGNKVDLLPGH 168
EF + A V+VF+ D + +A+ W + + +I + NK+DLL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS 125
Query: 169 PVHAEYRRRLLKR 181
+ E L KR
Sbjct: 126 CIKNEEAEGLAKR 138
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHLHEE 110
+++IG S VGK +LSR F S ++ + + T+ +W A L
Sbjct: 13 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 72
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGH 168
+I S + AL +VF+L T ++ W+ + + +++ +GNK DL
Sbjct: 73 RAITSAYYRGAVGAL-LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 131
Query: 169 PVHAEYRR 176
V E R
Sbjct: 132 EVPTEEAR 139
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG+S+VGK + L R F A S+ + T+ + +W E +
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
+ ++++++ + + +A++ W I ++ ++ +GNK D+
Sbjct: 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
+IIG + VGK +L + F+ D + + +N + +W E F
Sbjct: 25 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 84
Query: 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPV 170
+ ++V+++ T + L W+ +++ IGNK DL
Sbjct: 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES---- 140
Query: 171 HAEYRRRLLKREESSA 186
RR +KREE A
Sbjct: 141 -----RRDVKREEGEA 151
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R + F D ++++ + ++ + LW E F
Sbjct: 32 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 91
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDL 164
+ + A+V V++ + ++ +L W+ L + +GNK DL
Sbjct: 92 RKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHLHEE 110
I++IG S VGK +LSR + F S S+ + TI + +W A L
Sbjct: 13 IVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERY 72
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+I S + AL+ V++++ S+ + HW+ + + + IGNK DL
Sbjct: 73 RAITSAYYRGAVGALI-VYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 29/185 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT--MQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
F + V+VF++ +T L W D + F ++ +GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV-LGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS----ETEGSSLLGDEEPSWEIRRSCL 218
DL E R+ KR ++ +C S + ET + E+ I R+ L
Sbjct: 128 DL--------ENRQVATKRAQA-----WCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 219 EWCTE 223
+ TE
Sbjct: 175 KQETE 179
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 29/185 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT--MQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
F + V+VF++ +T L W D + F ++ +GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV-LGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS----ETEGSSLLGDEEPSWEIRRSCL 218
DL E R+ KR ++ +C S + ET + E+ I R+ L
Sbjct: 128 DL--------ENRQVATKRAQA-----WCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 219 EWCTE 223
+ TE
Sbjct: 175 KQETE 179
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELL-VNGWTINTKYYTADVS--------- 101
+ +G SNVGK ++L+ L + S + + +N + +N+KYY D+
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85
Query: 102 ----LWMAHLHEEFSIRSLPISDQLTALVMVFNLND--LSTLDA---LKHWVPSIDLQKF 152
LW + + F R +L MVF L D + D+ + W+ S+++ F
Sbjct: 86 KERMLWKRLVEDYFKNR--------WSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-F 136
Query: 153 EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADP--DFCQSGISE 197
I+L +KV + E+R+ K E + P GISE
Sbjct: 137 TIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISE 183
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
M S + + + ++++G GK T + R L+ FE ++ + V+ +T
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFE 153
++W E+F Q +++F++ T + +W DL +
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIP 121
Query: 154 ILLCIGNKVDL 164
I+LC GNKVD+
Sbjct: 122 IVLC-GNKVDI 131
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVN-GWTINTKYYTAD-----VSLWMA 105
++++G S VGK +L R F+D + + + G K D + +W
Sbjct: 13 VMLVGDSGVGKTCLLVR-----FKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVD 163
E F + AL++++++ + ++ D ++ W+ I Q L+ +GNKVD
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 164 LLPGHPVHAEYRRRLLKREES 184
H R++KRE+
Sbjct: 128 --SAHE-------RVVKREDG 139
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 77/185 (41%), Gaps = 29/185 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT--MQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
F + V+VF++ +T L W D + F ++ +GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV-LGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS----ETEGSSLLGDEEPSWEIRRSCL 218
D E R+ KR ++ +C S + ET + E+ I R+ L
Sbjct: 128 DF--------ENRQVATKRAQA-----WCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 219 EWCTE 223
+ TE
Sbjct: 175 KQETE 179
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG S VGK +LSR F S S+ + T+ + +W E +
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY 75
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGH 168
+I S + AL+ V++++ S+ + HW+ + + + IGNK DL
Sbjct: 76 RAITSAYYRGAVGALI-VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 169 PVHAEYRRRLLKREE 183
V E + + +
Sbjct: 135 AVPTEESKTFAQENQ 149
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 66 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 119
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 29/185 (15%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L ++ + T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT--MQIWDTAGLE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-------DLQKFEILLCIGNKV 162
F + V+VF++ +T L W D + F ++ +GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV-LGNKI 127
Query: 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS----ETEGSSLLGDEEPSWEIRRSCL 218
DL E R+ KR ++ +C S + ET + E+ I R+ L
Sbjct: 128 DL--------ENRQVATKRAQA-----WCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 219 EWCTE 223
+ TE
Sbjct: 175 KQETE 179
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q ++ F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE + + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK +LSR F S S+ + +I T +W E +
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 91
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+ ++V+++ T + ++ W+ + +++ +GNK DL
Sbjct: 92 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 123 TALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163
T ++VF++++ +TLD K WV + + I++ + NK+D
Sbjct: 118 TCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSL 102
R S + +++IG S VGK +LSR F S S+ + +I T +
Sbjct: 14 RGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 73
Query: 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGN 160
W E + + ++V+++ T + ++ W+ + +++ +GN
Sbjct: 74 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 133
Query: 161 KVDL 164
K DL
Sbjct: 134 KSDL 137
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHLHEE 110
+++IG S VGK +LSR F S S+ + +I T +W A L
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+I S + AL +V+++ T + ++ W+ + +++ +GNK DL
Sbjct: 92 RAITSAYYRGAVGAL-LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE + + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E++
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKY 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112
+IIG + VGK +L + F+ D + + I + +W E F
Sbjct: 14 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR 73
Query: 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPV 170
+ ++V+++ T + L W+ +++ IGNK DL
Sbjct: 74 SITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES---- 129
Query: 171 HAEYRRRLLKREESSA 186
RR +K+EE A
Sbjct: 130 -----RREVKKEEGEA 140
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSE-LLVNGWTINTKYYTADVSLWMAH 106
K I I+G +VGK ++ + + F D++D + E T+N + Y + L
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEY--HLQLVDTA 60
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALK--HWVPSIDLQKFEI-LLCIGNKVD 163
+E+SI S + ++V+++ + + + +K H + K +I ++ +GNK D
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 164 LLPGHPVHAEYRRRLLKREESSA-----DPDFCQSGISETE 199
L H E R++ EE A + F +S E +
Sbjct: 121 L------HME---RVISYEEGKALAESWNAAFLESSAKENQ 152
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 73 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 126
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHLHEE 110
+++IG S VGK +LSR F S S+ + +I T +W A L
Sbjct: 11 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 70
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+I S + AL +V+++ T + ++ W+ + +++ +GNK DL
Sbjct: 71 RAITSAYYRGAVGAL-LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKF 74
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 75 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 128
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ +T ++W E+F
Sbjct: 9 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
Q +++F++ T + +W DL + I+LC GNKVD+
Sbjct: 69 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW--HRDLVRVCENIPIVLC-GNKVDI 122
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++ R ++ + ++ ++ L T++ A + +W E
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD-KVATMQVWDTAGQE 69
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW---------VPSIDLQKFEILLCIGN 160
F + V+V+++ + S+ + +K W V S + F IL GN
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL---GN 126
Query: 161 KVDLLPGHPVHAEYRRRLLKR 181
K+D + +E + L +
Sbjct: 127 KIDAEESKKIVSEKSAQELAK 147
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSE-LLVNGWTINTKYYTADVSLWMAH 106
K I I+G +VGK ++ + + F D+ D + E T+N + Y + L
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY--HLQLVDTA 62
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALK--HWVPSIDLQKFEI-LLCIGNKVD 163
+E+SI S + ++V+++ + + + +K H + K +I ++ +GNK D
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 164 LLPGHPVHAEYRRRLLKREESSA 186
L H E R++ EE A
Sbjct: 123 L------HME---RVISYEEGKA 136
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHLHEE 110
+++IG S VGK +LSR F S S+ + +I T +W A L
Sbjct: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 73
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILL-CIGNKVDL 164
+I S + AL +V+++ T + ++ W+ + D I++ +GNK DL
Sbjct: 74 RAITSAYYRGAVGAL-LVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 128
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK +LSR F S S+ + +I T +W E +
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+ ++V+++ T + ++ W+ + +++ +GNK DL
Sbjct: 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ + T + +W E+F
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKF 74
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
+R + A++M F++ T + +W DL + I+LC GNKVD+
Sbjct: 75 GGLRDGYYINAQCAIIM-FDVTSRITYKNVPNW--HRDLVRVCENIPIVLC-GNKVDV 128
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSE-LLVNGWTINTKYYTADVSLWMAHLHEE 110
I I+G +VGK ++ + + F D+ D + E T+N + Y + L +E
Sbjct: 4 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY--HLQLVDTAGQDE 61
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALK--HWVPSIDLQKFEI-LLCIGNKVDLLPG 167
+SI S + ++V+++ + + + +K H + K +I ++ +GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL--- 118
Query: 168 HPVHAEYRRRLLKREESSA-----DPDFCQSGISETE 199
H E R++ EE A + F +S E +
Sbjct: 119 ---HME---RVISYEEGKALAESWNAAFLESSAKENQ 149
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHLHEE 110
+++IG S VGK +LSR F S S+ + +I T +W A L
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 67
Query: 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI-DLQKFEILL-CIGNKVDL 164
+I S + AL +V+++ T + ++ W+ + D I++ +GNK DL
Sbjct: 68 RAITSAYYRGAVGAL-LVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSE-LLVNGWTINTKYYTADVSLWMAH 106
K I I+G +VGK ++ + + F D+ D + E T+N + Y + L
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY--HLQLVDTA 62
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALK--HWVPSIDLQKFEI-LLCIGNKVD 163
+E+SI S + ++V+++ + + + +K H + K +I ++ +GNK D
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 164 LLPGHPVHAEYRRRLLKREESSA-----DPDFCQSGISETE 199
L H E R++ EE A + F +S E +
Sbjct: 123 L------HME---RVISYEEGKALAESWNAAFLESSAKENQ 154
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 52 ILIIGSSNVGKRTILSRLL--SVNFEDASDSSSELLVNGWTI-NTKYYTADVSLWMAHLH 108
I++IG S VGK +LSR N E S E + N K A + W
Sbjct: 10 IVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI--WDTAGQ 67
Query: 109 EEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
E + +I S + AL +V+++ ++ + ++ W+ + + ++L +GNK DL
Sbjct: 68 ERYRAITSAYYRGAVGAL-LVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL 125
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ + T + +W E+F
Sbjct: 8 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKF 67
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDL 164
+R + A++M F++ T + +W + + I+LC GNKVD+
Sbjct: 68 GGLRDGYYINAQCAIIM-FDVTSRITYKNVPNWHRDLVRVCENIPIVLC-GNKVDV 121
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+LIIG S VGK ++L R F + ++ + T+ + +W E F
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF 71
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL-LCIGNKVD 163
+ +++V+++ + +K W+ I+ ++ + +GNK D
Sbjct: 72 RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKND 124
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++++G GK T + R L+ FE ++ + V+ + T + +W E+F
Sbjct: 7 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKF 66
Query: 112 -SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL----QKFEILLCIGNKVDL 164
+R + A++M F++ T + +W DL + I+LC GNKVD+
Sbjct: 67 GGLRDGYYINAQCAIIM-FDVTSRITYKNVPNW--HRDLVRVCENIPIVLC-GNKVDV 120
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 212 EIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267
+ ++ C +C I+ +E A +++FD L I GD + YGA W G+V
Sbjct: 63 KFKKCCYGYC----IDLLEQLAEDMNFDFDLYIVGDGK-----YGAWKNGHWTGLV 109
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWM--AHLH- 108
++I+G VGK ++ + + F + D + E NT Y+ V+L HLH
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE--------NT--YSKIVTLGKDEFHLHL 76
Query: 109 ------EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI---LLCIG 159
+E+SI + V+V+++ L + ++ + + ++ +G
Sbjct: 77 VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136
Query: 160 NKVDLLPGHPVHAEYRRRLLKR-----EESSADPDFCQSGI 195
NK DL P V A ++L + ESSA + GI
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 43 RASLEKRPGILIIGSSNVGKRTILSRL 69
R S +P + I+G NVGK TI +R+
Sbjct: 17 RGSHMGKPVVAIVGRPNVGKSTIFNRI 43
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 44 ASLEKRP---GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT-INTKYYTAD 99
S+E+R I +IG VGK T ++R+L FE +++ + + T ++ +
Sbjct: 3 GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Query: 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILL 156
++W E+ ++ + ++ F++ T L WV + I++
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 157 CIGNKVDL 164
C NK+D+
Sbjct: 123 C-ANKIDI 129
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 53 LIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT 90
LIIG NVGK T+++RL N D W
Sbjct: 124 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASD--------SSSELLVNG---WTINTKYYTADV 100
++I+G NVGK T+L+RLL+ + +D S E+++ G ++T ++
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 305
Query: 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGN 160
+ + L E +++ + +D +++F L+ S LD + ++ K + L + N
Sbjct: 306 NDLVERLGIERTLQEIEKAD-----IVLFVLDASSPLDEEDRKI--LERIKNKRYLVVIN 358
Query: 161 KVDLL 165
KVD++
Sbjct: 359 KVDVV 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,420,698
Number of Sequences: 62578
Number of extensions: 334434
Number of successful extensions: 996
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 109
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)