BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040295
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R2R3|AAGAB_MOUSE Alpha- and gamma-adaptin-binding protein p34 OS=Mus musculus
GN=Aagab PE=2 SV=2
Length = 316
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+A+++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSAEINLCV--VPSKFLV-TAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C GI+
Sbjct: 104 AWLAEVMILVCDRV----------------------------CDDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQQAQEWCIKHGFELVELNPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+KS
Sbjct: 172 SNVVMKS 178
>sp|Q9R0Z7|AAGAB_RAT Alpha- and gamma-adaptin-binding protein p34 OS=Rattus norvegicus
GN=Aagab PE=1 SV=1
Length = 315
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+A+V+L + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSAEVNLCVVPSKCRVTAE---IAEAVQAFVVYFDSTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V C+ GI+
Sbjct: 104 TWLPEVMILVCDRV----------------------------CEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E C + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQQAQEWCIKHGFELVELCPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1
Length = 203
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTAD-----VSLWMAH 106
+L++G S VGK IL+R S FE+++ S+ G KY TAD +++W
Sbjct: 12 VLLVGDSGVGKSCILTRFTSGIFEESTTSTI-----GVDFKVKYLTADGKRCKLTIWDTA 66
Query: 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQ---KFEILLCIGNKV 162
E F + ++ V+++ T ++L+ +W+ D+ + I + + NKV
Sbjct: 67 GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126
Query: 163 DLLPGHPVHAEYRRRLLKR 181
DL V +E +R
Sbjct: 127 DLSAQRQVSSEEGHDFARR 145
>sp|Q5RET3|AAGAB_PONAB Alpha- and gamma-adaptin-binding protein p34 OS=Pongo abelii
GN=AAGAB PE=2 SV=1
Length = 315
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P +
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDGTQKSGLDSVSSWLPLAE 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>sp|P90726|RAB18_CAEBR Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18
PE=3 SV=1
Length = 202
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILIIG S VGK +++ R + F E A+ + V TI+ +++W E
Sbjct: 14 ILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNR--VKLAIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLLP 166
F + ++ V+++ S+ + LKHW+ +D I + + NK+D +P
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNVIKMMVANKID-MP 130
Query: 167 GHPVHAEYRRRLLKREES 184
V E + KR +
Sbjct: 131 NRTVTREEGLKFAKRHRT 148
>sp|Q6PD74|AAGAB_HUMAN Alpha- and gamma-adaptin-binding protein p34 OS=Homo sapiens
GN=AAGAB PE=1 SV=1
Length = 315
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 89 WTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID 148
WTI+ KYY+AD++L + + +F + + I++ + A V+ F+ S LD++ W+P
Sbjct: 47 WTIDNKYYSADINLCV--VPNKFLVTA-EIAESVQAFVVYFDSTQKSGLDSVSSWLPLAK 103
Query: 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208
E+++ + ++V + GI+
Sbjct: 104 AWLPEVMILVCDRV----------------------------SEDGIN------------ 123
Query: 209 PSWEIRRSCLEWCTEHRIEYIEACASNV-----DFDKCLSIDGDSQGVERLYGALSAHMW 263
R+ EWC +H E +E + DF +S GV+R+ AL+A++W
Sbjct: 124 -----RQKAQEWCIKHGFELVELSPEELPEEDDDFP-------ESTGVKRIVQALNANVW 171
Query: 264 PGMVLKS 270
+V+K+
Sbjct: 172 SNVVMKN 178
>sp|P35284|RAB12_RAT Ras-related protein Rab-12 OS=Rattus norvegicus GN=Rab12 PE=1 SV=2
Length = 243
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 44 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 103
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 104 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 157
>sp|Q6IQ22|RAB12_HUMAN Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=1 SV=3
Length = 244
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 45 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 104
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 105 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 158
>sp|P35283|RAB12_MOUSE Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3
Length = 243
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 44 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 103
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 104 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 157
>sp|Q5JT25|RAB41_HUMAN Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2
Length = 222
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN 92
FG + + T+ SL K +L +G +VGK +I+SR + +F A ++ + T+
Sbjct: 16 FGLEAAERTEYQSLCKSK-LLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMY 74
Query: 93 TKYYTADVSLWMAHLHEEF-SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151
+ + LW E F S+ I D A+V V+++ ++++ WV + ++
Sbjct: 75 LEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVV-VYDITNINSFKETDKWVEHVRAER 133
Query: 152 FE--ILLCIGNKVDLLPGHPVHAE 173
+ +++ +GNK+DL V AE
Sbjct: 134 GDDVVIMLLGNKIDLDNKRQVTAE 157
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK L R ++ D+ S+ + T+ + T + +W E F
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D+ + + +K W+ ID + + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRA 130
Query: 170 V 170
V
Sbjct: 131 V 131
>sp|P34143|RABC_DICDI Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2
SV=2
Length = 196
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY--YTADVSLWMAHLHE 109
I+++G S VGK +IL R F + + N TI K T + LW E
Sbjct: 9 IILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID--LQKFEILLCIGNKVDLLPG 167
F + +++V+++ D + + K+WV I+ Q I++ +GNK D++
Sbjct: 69 RFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQ 128
Query: 168 HPVHAEYRRRLLKR 181
V E + + ++
Sbjct: 129 RKVTFEQGQEMAEQ 142
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S+VGK +L R + D+ S+ + TI T + +W E F
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V++ ++ + + +K W+ ID E + L IGNK D++
Sbjct: 71 RTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKV 130
Query: 170 VHAEYRRRL 178
V E R L
Sbjct: 131 VSTETGRAL 139
>sp|P51152|RAB12_CANFA Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12
PE=2 SV=1
Length = 208
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++IIGS VGK +++ R F +A S+ + T+ + + +W E F
Sbjct: 9 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 68
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEI--LLCIGNKVD 163
+ + +++V+++ T D L W+ ID E LL +GNK+D
Sbjct: 69 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 122
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R F D+ S+ + TI + +W E F
Sbjct: 36 ILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERF 95
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLPG 167
+ L++V+++ + + +++K W+ ID+ +F + L +GNK DL
Sbjct: 96 KTITTSYYRGAHGLIIVYDITSMDSFNSIKRWL--IDVDRFASPSVLKLIVGNKCDLNSK 153
Query: 168 HPVHAEYRRRL 178
V + ++
Sbjct: 154 RAVDFKIAKKF 164
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
IL+IG S VGK +L R ++ D S+ + T+N T + +W E F
Sbjct: 13 ILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERF 72
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLL 165
+ +++V++ D + +K W+ ID E + L +GNK DL+
Sbjct: 73 RTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLV 128
>sp|Q2TBH7|RAB4A_BOVIN Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=3
Length = 218
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>sp|P05714|RAB4A_RAT Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=3
Length = 218
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>sp|P20338|RAB4A_HUMAN Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=3
Length = 218
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q I+LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC-GNKKDL 130
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++++G + VGK +I+ R +S +F + + + + L TIN +T +W E
Sbjct: 10 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--HTVKFEIWDTAGQE 67
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPG 167
F+ + A ++V+++ + +HWV + Q + I+ +GNK+D+L
Sbjct: 68 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ- 126
Query: 168 HPVHAEYRRRLLKREE 183
E R + REE
Sbjct: 127 -----EGGERKVAREE 137
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++ +++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSTE 134
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + T+ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E RL +
Sbjct: 131 VQREQAERLAR 141
>sp|Q3ZC27|RAB19_BOVIN Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1
Length = 217
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
I++IG SNVGK ++ S + +A ++ + V I+ K + +W E
Sbjct: 20 IILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGK--KVKMQVWDTAGQE 77
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDL 164
F + A ++ ++L ST +++ HW+ I+ +++ IGNK DL
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDL 134
>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1
Length = 226
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK IL+R F S S+ + T+ + T +W E +
Sbjct: 20 VVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERY 79
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI--DLQKFEILLCIGNKVDLLPGHP 169
+ ++V+++ T D + W+ + K +++ IGNK DL+
Sbjct: 80 RAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRD 139
Query: 170 VHAEYRRRLLKRE 182
V E + ++E
Sbjct: 140 VPTEDAKEFAEKE 152
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRK 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQKEQADKLAR 141
>sp|P56371|RAB4A_MOUSE Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=2
Length = 218
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IG++ GK +L + + F+D S+ + + IN + +W E F
Sbjct: 16 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 75
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ + Q ++LC GNK DL
Sbjct: 76 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILC-GNKKDL 130
>sp|Q32NQ0|RAB19_XENLA Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1
Length = 213
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 43 RASLEKRP-----GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT 97
R SLE P I++IG SNVGK ++ R S F D ++ + ++N
Sbjct: 4 RGSLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKK 63
Query: 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---- 153
V +W E F + ++ +++ + +++ HW+ + K+
Sbjct: 64 VKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWI--YEAGKYGAANL 121
Query: 154 ILLCIGNKVDL 164
+L+ +GNK DL
Sbjct: 122 MLMLMGNKSDL 132
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ D+ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++ +++ DL + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTSQKV 130
Query: 170 VHAE 173
V E
Sbjct: 131 VSTE 134
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF S+ + T++ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQ 130
Query: 170 VHAEYRRRLLK 180
V E +L +
Sbjct: 131 VQREQAEKLAR 141
>sp|Q8MXS1|RAB18_CAEEL Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=3
SV=1
Length = 203
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109
ILIIG S VGK +++ R + F E A+ + V I+ +++W E
Sbjct: 14 ILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNR--VKLAIWDTAGQE 71
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLP 166
F + ++ V+++ S+ + L HW+ +D I + + NK+D +P
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQEVDTYCTNDNIIKMMVANKID-MP 130
Query: 167 GHPVHAEYRRRLLKREES 184
V E + KR +
Sbjct: 131 NRVVTREEGLKFAKRHRT 148
>sp|Q9LS94|RAG3F_ARATH Ras-related protein RABG3f OS=Arabidopsis thaliana GN=RABG3F PE=2
SV=1
Length = 206
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L + +T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW--------VPSIDLQKFEILLCIGNK 161
F + V+V+++N + + + L +W PS D + F +L IGNK
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPS-DPENFPFVL-IGNK 126
Query: 162 VDLLPGH 168
VD+ G+
Sbjct: 127 VDVDDGN 133
>sp|P97950|RB33A_MOUSE Ras-related protein Rab-33A OS=Mus musculus GN=Rab33a PE=2 SV=1
Length = 237
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R F D ++++ + T+ + V +W E F
Sbjct: 39 IIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERF 98
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL---LCIGNKVDL 164
+ + A+V V+++ +++ LK W+ + L + +GNK DL
Sbjct: 99 RKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
>sp|Q14088|RB33A_HUMAN Ras-related protein Rab-33A OS=Homo sapiens GN=RAB33A PE=1 SV=2
Length = 237
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
I++IG SNVGK + R F D ++++ + T+ + V +W E F
Sbjct: 39 IIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERF 98
Query: 112 SIRSLP-ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL---LCIGNKVDL 164
+ + A+V V+++ +++ LK W+ + L + +GNK DL
Sbjct: 99 RKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
>sp|Q68EK7|RAB4B_DANRE Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1
Length = 213
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
L+IGS+ GK +L + + F+ S+ + + +N T + +W E F
Sbjct: 11 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVP---SIDLQKFEILLCIGNKVDL 164
+ ++V+++ T +AL +W+ ++ I+LC GNK DL
Sbjct: 71 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILC-GNKKDL 125
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R ++ ++ S+ + T+ T + +W E F
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRV 130
Query: 170 VHAEYRRRL 178
V E + L
Sbjct: 131 VSYEAGKAL 139
>sp|Q40787|RAB7_CENCI Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1
Length = 206
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L + +T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHW--------VPSIDLQKFEILLCIGNK 161
F + V+V+++N + + D L +W PS D F +L +GNK
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS-DPDNFPFVL-LGNK 126
Query: 162 VDLLPGH 168
VD+ G+
Sbjct: 127 VDVDGGN 133
>sp|P31022|RAB7_PEA Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1
Length = 206
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYYTADVSLWMAHLHE 109
++I+G S VGK +++++ ++ F + ++ ++ L + +T + +W E
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAGQE 68
Query: 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV--------PSIDLQKFEILLCIGNK 161
F + V+V+++N + + D L +W PS D + F ++ IGNK
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPS-DPENFPFVV-IGNK 126
Query: 162 VDLLPGH 168
+D+ G+
Sbjct: 127 IDIDGGN 133
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
++ +G +VGK ++++R + +F++ ++ + T+ + T + LW E F
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 75
Query: 112 SIRSL---PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLP 166
RSL I D A+V V+++ ++++ W+ + ++ I++ +GNK DL
Sbjct: 76 --RSLIPSYIRDSTVAVV-VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 167 GHPVHAEYRRRLLK 180
V E R K
Sbjct: 133 KRQVSIEEGERKAK 146
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1
Length = 222
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+++IG S VGK IL+R F S ++ + T+ ++ + +W E +
Sbjct: 18 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERY 77
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDLLPGHP 169
+ ++V+++ T D + W+ + + +++ IGNK DL
Sbjct: 78 RAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRA 137
Query: 170 VHAEYRRRLLKRE 182
V E + ++E
Sbjct: 138 VPTEDAKEFAQKE 150
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK ++ R NF + S+ + T+ + + +W E F
Sbjct: 11 LLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERF 70
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDLLPGHP 169
+ +++V+++ D + + +++W+ SI + L +GNK D+
Sbjct: 71 KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM----- 125
Query: 170 VHAEYRRRLLKREESSADPDFCQSGIS--ETEGSSLLGDEEPSWEIRRSCL 218
E +R++LK + AD + GI ET S + +E + R L
Sbjct: 126 ---EAKRKVLKEQ---ADKLAREHGIRFFETSAKSSMNVDEAFNSLARDIL 170
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 40 STD-RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSS--SELLVNGWTINTKYY 96
STD R +K ++++G N GK I SRL+ F +DS+ + LV ++
Sbjct: 39 STDNRNKFDKGFKLVLLGEMNTGKTCISSRLVRNEF-GPTDSTIGAAFLVKSMVVDN--I 95
Query: 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE--- 153
+ +W E + + A V+V+++ +T + LK WV +LQK
Sbjct: 96 NIKLEIWDTAGQERYRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVS--ELQKHASPN 153
Query: 154 -ILLCIGNKVDLLPGHPVHAEYRRRLL 179
IL GNKVD LP V + R +
Sbjct: 154 LILALAGNKVD-LPNREVQVDEVNRYI 179
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111
+L+IG S VGK +L R + ++ S+ + TI T + +W E F
Sbjct: 14 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73
Query: 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL--LCIGNKVDL 164
+ +++V+++ D + + +K W+ ID E + L +GNK DL
Sbjct: 74 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,606,890
Number of Sequences: 539616
Number of extensions: 4282284
Number of successful extensions: 14319
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 14174
Number of HSP's gapped (non-prelim): 438
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)