Query 040295
Match_columns 289
No_of_seqs 133 out of 1788
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 8E-38 1.7E-42 267.4 15.8 174 43-270 3-179 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.5E-35 3.2E-40 252.6 16.1 167 47-267 3-171 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4.9E-35 1.1E-39 249.8 16.6 171 48-272 21-194 (221)
4 KOG0098 GTPase Rab2, small G p 100.0 1.6E-35 3.4E-40 251.1 13.3 172 45-270 2-175 (216)
5 KOG0078 GTP-binding protein SE 100.0 4.8E-35 1E-39 253.2 15.2 172 45-270 8-181 (207)
6 KOG0394 Ras-related GTPase [Ge 100.0 2.3E-35 5.1E-40 249.6 12.3 168 48-267 8-182 (210)
7 KOG0080 GTPase Rab18, small G 100.0 2.3E-34 4.9E-39 238.8 14.6 173 44-270 6-181 (209)
8 cd04121 Rab40 Rab40 subfamily. 100.0 8.4E-33 1.8E-37 240.4 17.8 165 47-265 4-169 (189)
9 cd04120 Rab12 Rab12 subfamily. 100.0 1E-32 2.2E-37 242.3 17.5 163 50-266 1-166 (202)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 6.4E-33 1.4E-37 239.5 14.8 173 43-269 8-182 (222)
11 KOG0086 GTPase Rab4, small G p 100.0 3.2E-33 6.8E-38 230.4 11.6 174 43-270 3-178 (214)
12 KOG0079 GTP-binding protein H- 100.0 5.1E-33 1.1E-37 228.0 8.7 166 47-266 6-172 (198)
13 cd04122 Rab14 Rab14 subfamily. 100.0 3.2E-31 6.9E-36 223.3 19.8 162 49-264 2-165 (166)
14 cd04133 Rop_like Rop subfamily 100.0 2.3E-31 4.9E-36 228.8 19.1 168 50-262 2-172 (176)
15 KOG0088 GTPase Rab21, small G 100.0 1.5E-32 3.4E-37 227.5 11.2 183 46-282 10-194 (218)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.8E-31 6.1E-36 229.4 19.0 173 48-263 4-180 (182)
17 cd01875 RhoG RhoG subfamily. 100.0 5.5E-31 1.2E-35 228.5 19.5 174 49-265 3-179 (191)
18 cd04131 Rnd Rnd subfamily. Th 100.0 5.1E-31 1.1E-35 226.7 19.2 172 49-263 1-176 (178)
19 cd04127 Rab27A Rab27a subfamil 100.0 9.1E-31 2E-35 222.8 18.9 164 48-265 3-179 (180)
20 KOG0093 GTPase Rab3, small G p 100.0 1.1E-31 2.3E-36 220.0 11.6 169 44-266 16-186 (193)
21 cd04117 Rab15 Rab15 subfamily. 100.0 2.9E-30 6.4E-35 217.2 19.9 158 50-261 1-160 (161)
22 cd01867 Rab8_Rab10_Rab13_like 100.0 2.6E-30 5.6E-35 218.2 19.3 163 48-264 2-166 (167)
23 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.6E-30 5.6E-35 223.0 19.6 165 50-264 1-167 (182)
24 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-30 5E-35 225.8 19.4 164 50-267 1-172 (201)
25 PF00071 Ras: Ras family; Int 100.0 8.4E-31 1.8E-35 218.9 15.0 159 51-263 1-161 (162)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 9.7E-31 2.1E-35 223.1 15.6 162 49-265 2-166 (172)
27 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5E-30 1.1E-34 229.8 19.8 174 48-264 12-189 (232)
28 KOG0095 GTPase Rab30, small G 100.0 4.5E-31 9.7E-36 217.0 11.2 171 47-271 5-177 (213)
29 PLN03071 GTP-binding nuclear p 100.0 3.3E-30 7.2E-35 228.7 17.7 165 47-267 11-176 (219)
30 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 9.5E-30 2.1E-34 213.8 19.2 161 49-263 2-164 (166)
31 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-29 2.3E-34 214.0 19.5 159 50-262 2-162 (165)
32 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.4E-30 1.4E-34 218.8 18.4 170 50-262 2-174 (175)
33 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-29 2.9E-34 221.0 20.6 169 48-270 5-174 (199)
34 cd00877 Ran Ran (Ras-related n 100.0 8.1E-30 1.8E-34 215.9 18.7 159 50-264 1-160 (166)
35 cd04119 RJL RJL (RabJ-Like) su 100.0 1.6E-29 3.4E-34 211.0 19.6 160 50-263 1-167 (168)
36 cd04136 Rap_like Rap-like subf 100.0 1.1E-29 2.3E-34 211.8 18.0 158 50-262 2-162 (163)
37 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.8E-29 3.8E-34 215.0 18.9 161 51-263 2-165 (170)
38 cd01871 Rac1_like Rac1-like su 100.0 2E-29 4.3E-34 215.6 19.0 169 50-261 2-173 (174)
39 KOG4273 Uncharacterized conser 100.0 8.4E-30 1.8E-34 225.8 17.1 236 49-284 4-243 (418)
40 cd01868 Rab11_like Rab11-like. 100.0 3.8E-29 8.2E-34 209.7 19.9 161 48-262 2-164 (165)
41 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.9E-29 6.3E-34 223.5 20.0 174 50-266 2-179 (222)
42 cd04126 Rab20 Rab20 subfamily. 100.0 6.1E-30 1.3E-34 227.5 15.6 182 50-271 1-198 (220)
43 cd04125 RabA_like RabA-like su 100.0 4.2E-29 9.1E-34 215.1 20.2 164 50-267 1-166 (188)
44 cd01866 Rab2 Rab2 subfamily. 100.0 4.1E-29 8.9E-34 211.3 19.8 164 47-264 2-167 (168)
45 KOG0091 GTPase Rab39, small G 100.0 8.8E-31 1.9E-35 218.0 9.2 168 47-268 6-178 (213)
46 cd04106 Rab23_lke Rab23-like s 100.0 5E-29 1.1E-33 207.9 19.2 158 50-261 1-161 (162)
47 cd01864 Rab19 Rab19 subfamily. 100.0 7.3E-29 1.6E-33 208.5 19.6 160 48-261 2-164 (165)
48 cd04109 Rab28 Rab28 subfamily. 100.0 5.2E-29 1.1E-33 219.8 19.6 162 50-265 1-168 (215)
49 cd04124 RabL2 RabL2 subfamily. 100.0 8.2E-29 1.8E-33 208.2 19.8 159 50-265 1-160 (161)
50 cd04132 Rho4_like Rho4-like su 100.0 4.4E-29 9.6E-34 214.2 18.5 169 50-268 1-172 (187)
51 PLN03110 Rab GTPase; Provision 100.0 7.8E-29 1.7E-33 219.3 20.6 167 45-265 8-176 (216)
52 cd04111 Rab39 Rab39 subfamily. 100.0 4.3E-29 9.4E-34 220.2 18.9 165 49-267 2-170 (211)
53 cd04113 Rab4 Rab4 subfamily. 100.0 7.4E-29 1.6E-33 207.2 19.3 159 50-262 1-161 (161)
54 cd04144 Ras2 Ras2 subfamily. 100.0 3.5E-29 7.6E-34 216.5 17.8 163 51-268 1-168 (190)
55 cd04134 Rho3 Rho3 subfamily. 100.0 6.2E-29 1.3E-33 214.9 19.3 172 51-265 2-176 (189)
56 PTZ00369 Ras-like protein; Pro 100.0 4.1E-29 8.8E-34 215.9 18.0 165 47-266 3-170 (189)
57 cd04175 Rap1 Rap1 subgroup. T 100.0 5E-29 1.1E-33 209.0 17.8 158 50-262 2-162 (164)
58 KOG0097 GTPase Rab14, small G 100.0 1.2E-29 2.6E-34 207.0 12.7 183 45-281 7-198 (215)
59 cd04176 Rap2 Rap2 subgroup. T 100.0 8.4E-29 1.8E-33 207.2 18.2 158 50-262 2-162 (163)
60 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7.9E-29 1.7E-33 209.9 17.3 160 49-262 2-168 (170)
61 PLN03108 Rab family protein; P 100.0 2E-28 4.3E-33 215.6 20.3 167 46-266 3-171 (210)
62 smart00174 RHO Rho (Ras homolo 100.0 1.1E-28 2.4E-33 208.6 17.9 170 52-264 1-173 (174)
63 smart00175 RAB Rab subfamily o 100.0 2.5E-28 5.5E-33 203.5 19.4 161 50-264 1-163 (164)
64 smart00176 RAN Ran (Ras-relate 100.0 1E-28 2.2E-33 216.6 17.4 157 55-267 1-158 (200)
65 KOG0081 GTPase Rab27, small G 100.0 5.6E-31 1.2E-35 218.3 2.9 168 45-266 5-184 (219)
66 cd04116 Rab9 Rab9 subfamily. 100.0 2.6E-28 5.7E-33 205.8 19.2 160 48-262 4-170 (170)
67 cd04112 Rab26 Rab26 subfamily. 100.0 2.5E-28 5.3E-33 211.4 19.5 163 50-266 1-166 (191)
68 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.8E-28 4E-33 203.4 17.6 157 50-262 2-161 (162)
69 smart00173 RAS Ras subfamily o 100.0 2.1E-28 4.6E-33 204.7 17.5 159 50-263 1-162 (164)
70 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.7E-28 8.1E-33 202.7 18.2 159 49-262 2-163 (164)
71 cd04140 ARHI_like ARHI subfami 100.0 3.6E-28 7.8E-33 204.7 18.2 156 50-260 2-162 (165)
72 cd04118 Rab24 Rab24 subfamily. 100.0 4.6E-28 9.9E-33 209.1 19.0 166 50-265 1-168 (193)
73 cd01873 RhoBTB RhoBTB subfamil 100.0 4.5E-28 9.8E-33 211.6 19.0 176 49-261 2-194 (195)
74 cd01860 Rab5_related Rab5-rela 100.0 8.2E-28 1.8E-32 200.7 19.7 159 50-262 2-162 (163)
75 cd01861 Rab6 Rab6 subfamily. 100.0 9.9E-28 2.1E-32 199.8 19.6 158 50-261 1-160 (161)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 1E-27 2.3E-32 200.5 19.5 159 50-262 1-163 (164)
77 cd04103 Centaurin_gamma Centau 100.0 3.2E-28 7E-33 205.2 14.9 153 50-261 1-157 (158)
78 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.4E-27 3.1E-32 202.7 18.9 167 50-259 1-170 (173)
79 cd04135 Tc10 TC10 subfamily. 100.0 2.7E-27 5.9E-32 200.1 19.0 170 50-262 1-173 (174)
80 cd01892 Miro2 Miro2 subfamily. 100.0 1.5E-27 3.3E-32 202.7 17.5 162 48-263 3-166 (169)
81 cd01863 Rab18 Rab18 subfamily. 100.0 4.1E-27 9E-32 196.3 19.3 158 50-262 1-161 (161)
82 cd04142 RRP22 RRP22 subfamily. 100.0 2.8E-27 6E-32 207.0 18.7 162 50-265 1-176 (198)
83 cd04146 RERG_RasL11_like RERG/ 100.0 8.3E-28 1.8E-32 202.0 14.7 158 51-263 1-164 (165)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 5.3E-27 1.1E-31 198.1 18.2 160 50-264 2-165 (168)
85 cd04123 Rab21 Rab21 subfamily. 100.0 1.5E-26 3.3E-31 191.8 20.0 159 50-262 1-161 (162)
86 cd01862 Rab7 Rab7 subfamily. 100.0 1.2E-26 2.6E-31 195.1 19.5 163 50-266 1-170 (172)
87 KOG0083 GTPase Rab26/Rab37, sm 100.0 5E-29 1.1E-33 201.5 4.4 157 54-264 2-161 (192)
88 cd01870 RhoA_like RhoA-like su 100.0 1.3E-26 2.8E-31 196.1 19.3 170 50-262 2-174 (175)
89 cd04143 Rhes_like Rhes_like su 99.9 8.4E-27 1.8E-31 210.8 19.1 161 50-265 1-173 (247)
90 PLN03118 Rab family protein; P 99.9 1.2E-26 2.6E-31 204.0 19.4 166 45-265 10-179 (211)
91 cd04148 RGK RGK subfamily. Th 99.9 2.7E-26 5.8E-31 203.9 18.9 162 50-267 1-167 (221)
92 cd04114 Rab30 Rab30 subfamily. 99.9 7.6E-26 1.7E-30 190.1 19.9 162 48-263 6-169 (169)
93 cd04102 RabL3 RabL3 (Rab-like3 99.9 5.3E-26 1.2E-30 199.8 19.4 172 50-261 1-198 (202)
94 cd00154 Rab Rab family. Rab G 99.9 6.3E-26 1.4E-30 186.0 18.4 156 50-259 1-158 (159)
95 cd04139 RalA_RalB RalA/RalB su 99.9 9.4E-26 2E-30 187.7 18.3 159 50-263 1-162 (164)
96 KOG0395 Ras-related GTPase [Ge 99.9 1.5E-26 3.3E-31 202.3 13.4 161 49-264 3-166 (196)
97 PTZ00132 GTP-binding nuclear p 99.9 1.6E-25 3.5E-30 197.1 19.6 175 45-275 5-180 (215)
98 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.2E-26 7E-31 193.6 14.2 155 52-260 2-163 (164)
99 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.5E-26 9.7E-31 196.1 14.3 172 49-271 3-178 (183)
100 PTZ00133 ADP-ribosylation fact 99.9 8.2E-26 1.8E-30 194.7 15.5 162 49-266 17-181 (182)
101 cd00876 Ras Ras family. The R 99.9 2.4E-25 5.2E-30 184.2 17.5 157 51-262 1-160 (160)
102 cd04150 Arf1_5_like Arf1-Arf5- 99.9 8E-26 1.7E-30 190.1 14.8 112 50-166 1-115 (159)
103 cd04129 Rho2 Rho2 subfamily. 99.9 1.4E-25 3.1E-30 193.4 16.5 172 50-266 2-176 (187)
104 cd00157 Rho Rho (Ras homology) 99.9 3.6E-25 7.8E-30 185.9 18.1 167 50-260 1-170 (171)
105 cd04149 Arf6 Arf6 subfamily. 99.9 1.2E-25 2.6E-30 191.0 15.0 152 48-260 8-167 (168)
106 smart00177 ARF ARF-like small 99.9 1.5E-25 3.2E-30 191.5 15.5 159 48-262 12-173 (175)
107 PLN00223 ADP-ribosylation fact 99.9 3.6E-25 7.7E-30 190.6 17.7 113 49-166 17-132 (181)
108 cd04158 ARD1 ARD1 subfamily. 99.9 1.1E-25 2.3E-30 190.9 14.1 157 51-268 1-166 (169)
109 cd01893 Miro1 Miro1 subfamily. 99.9 9E-25 1.9E-29 184.3 18.7 161 50-264 1-165 (166)
110 cd04147 Ras_dva Ras-dva subfam 99.9 4.8E-25 1E-29 191.9 16.9 163 51-267 1-167 (198)
111 KOG0393 Ras-related small GTPa 99.9 6.1E-26 1.3E-30 196.8 10.9 177 48-267 3-183 (198)
112 cd04154 Arl2 Arl2 subfamily. 99.9 7.8E-25 1.7E-29 185.9 15.6 152 48-260 13-172 (173)
113 cd04137 RheB Rheb (Ras Homolog 99.9 2.3E-24 4.9E-29 183.6 17.9 161 50-265 2-165 (180)
114 cd04156 ARLTS1 ARLTS1 subfamil 99.9 9.7E-25 2.1E-29 181.8 14.0 156 51-260 1-159 (160)
115 cd04157 Arl6 Arl6 subfamily. 99.9 3.4E-24 7.4E-29 178.4 16.4 112 51-166 1-118 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.4E-24 5.3E-29 183.5 15.4 156 49-260 15-173 (174)
117 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.7E-24 1E-28 180.8 14.9 161 51-260 1-166 (167)
118 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.5E-23 3.2E-28 174.5 15.6 153 51-260 1-157 (158)
119 cd04151 Arl1 Arl1 subfamily. 99.9 1.1E-23 2.5E-28 175.8 14.7 153 51-260 1-157 (158)
120 KOG4252 GTP-binding protein [S 99.9 1.7E-25 3.7E-30 189.0 2.3 171 44-268 15-186 (246)
121 PLN00023 GTP-binding protein; 99.9 2E-23 4.4E-28 194.0 16.3 122 45-166 17-165 (334)
122 cd00879 Sar1 Sar1 subfamily. 99.9 1.8E-23 3.9E-28 179.7 14.2 114 48-166 18-134 (190)
123 PTZ00099 rab6; Provisional 99.9 6.8E-23 1.5E-27 176.2 17.6 143 72-268 3-147 (176)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.6E-23 7.9E-28 173.5 14.9 158 51-261 1-167 (167)
125 cd04159 Arl10_like Arl10-like 99.9 1.6E-22 3.5E-27 166.0 14.6 155 51-260 1-158 (159)
126 smart00178 SAR Sar1p-like memb 99.9 2.2E-22 4.8E-27 173.3 15.8 114 47-165 15-131 (184)
127 cd01890 LepA LepA subfamily. 99.9 9.1E-22 2E-26 167.0 15.3 154 51-262 2-176 (179)
128 COG1100 GTPase SAR1 and relate 99.9 1.9E-21 4E-26 170.6 17.6 175 50-266 6-188 (219)
129 KOG3883 Ras family small GTPas 99.9 1.1E-21 2.3E-26 162.2 14.9 176 45-282 5-186 (198)
130 cd04171 SelB SelB subfamily. 99.9 3E-21 6.5E-26 160.5 15.9 151 51-260 2-163 (164)
131 cd04155 Arl3 Arl3 subfamily. 99.9 4.7E-21 1E-25 161.7 17.3 114 48-166 13-129 (173)
132 PF00025 Arf: ADP-ribosylation 99.9 1.6E-21 3.6E-26 167.0 14.5 161 47-262 12-175 (175)
133 TIGR02528 EutP ethanolamine ut 99.9 5.2E-22 1.1E-26 162.8 10.9 134 51-259 2-141 (142)
134 cd01897 NOG NOG1 is a nucleola 99.9 4.7E-21 1E-25 160.8 16.6 154 50-263 1-168 (168)
135 cd01898 Obg Obg subfamily. Th 99.9 7.9E-21 1.7E-25 159.5 15.2 153 51-261 2-169 (170)
136 KOG0073 GTP-binding ADP-ribosy 99.9 1.6E-20 3.4E-25 156.8 15.5 164 46-264 13-179 (185)
137 TIGR00231 small_GTP small GTP- 99.9 2.2E-20 4.8E-25 151.9 16.1 155 50-259 2-160 (161)
138 cd01878 HflX HflX subfamily. 99.8 2.9E-20 6.2E-25 162.0 15.1 153 47-262 39-204 (204)
139 PF08477 Miro: Miro-like prote 99.8 4E-20 8.6E-25 147.1 12.3 113 51-163 1-119 (119)
140 KOG1673 Ras GTPases [General f 99.8 4.6E-20 9.9E-25 152.9 11.7 166 49-263 20-186 (205)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.5E-19 5.3E-24 149.9 16.2 111 51-166 2-116 (168)
142 cd00882 Ras_like_GTPase Ras-li 99.8 3.5E-19 7.6E-24 142.7 15.6 152 54-259 1-156 (157)
143 cd01891 TypA_BipA TypA (tyrosi 99.8 3.1E-19 6.8E-24 154.7 15.2 114 51-166 4-131 (194)
144 cd01879 FeoB Ferrous iron tran 99.8 3.1E-19 6.7E-24 147.6 13.7 147 54-261 1-155 (158)
145 KOG0070 GTP-binding ADP-ribosy 99.8 5.3E-19 1.2E-23 150.5 12.8 159 50-264 18-179 (181)
146 TIGR03156 GTP_HflX GTP-binding 99.8 8.9E-19 1.9E-23 166.0 15.6 150 48-261 188-350 (351)
147 PRK04213 GTP-binding protein; 99.8 3.9E-19 8.5E-24 154.3 12.0 153 47-264 7-193 (201)
148 TIGR00436 era GTP-binding prot 99.8 2.6E-18 5.5E-23 157.1 17.2 155 51-266 2-167 (270)
149 cd01889 SelB_euk SelB subfamil 99.8 1.4E-18 3.1E-23 150.3 14.7 167 50-266 1-189 (192)
150 PRK15494 era GTPase Era; Provi 99.8 1.4E-18 3E-23 164.0 15.8 164 48-275 51-228 (339)
151 cd00881 GTP_translation_factor 99.8 2E-18 4.3E-23 146.7 15.3 170 51-262 1-186 (189)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.7E-18 5.8E-23 141.2 14.0 147 49-262 1-156 (157)
153 PRK12299 obgE GTPase CgtA; Rev 99.8 2.9E-18 6.4E-23 161.4 15.9 158 50-264 159-329 (335)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.9E-18 6.3E-23 166.9 16.2 153 46-265 200-362 (442)
155 PRK03003 GTP-binding protein D 99.8 2.1E-18 4.5E-23 169.4 15.1 159 48-262 210-381 (472)
156 KOG4423 GTP-binding protein-li 99.8 7.9E-21 1.7E-25 161.6 -1.8 167 47-266 23-197 (229)
157 cd01881 Obg_like The Obg-like 99.8 2.4E-18 5.2E-23 144.8 12.8 151 54-261 1-175 (176)
158 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5.8E-19 1.2E-23 150.7 8.4 166 48-269 9-175 (216)
159 PRK15467 ethanolamine utilizat 99.8 1.9E-18 4.2E-23 145.7 11.5 140 51-265 3-149 (158)
160 PRK00454 engB GTP-binding prot 99.8 1.1E-17 2.4E-22 144.1 15.9 159 47-264 22-195 (196)
161 TIGR02729 Obg_CgtA Obg family 99.8 1.2E-17 2.5E-22 157.1 16.5 156 49-262 157-328 (329)
162 cd01894 EngA1 EngA1 subfamily. 99.8 4.1E-18 8.9E-23 140.3 11.6 146 53-262 1-157 (157)
163 TIGR01393 lepA GTP-binding pro 99.8 1E-17 2.3E-22 168.4 16.5 157 51-265 5-182 (595)
164 PRK03003 GTP-binding protein D 99.8 7.7E-18 1.7E-22 165.4 14.6 153 49-264 38-200 (472)
165 TIGR03598 GTPase_YsxC ribosome 99.8 1.3E-17 2.8E-22 142.7 13.1 123 39-166 8-143 (179)
166 PRK05291 trmE tRNA modificatio 99.8 9.9E-18 2.1E-22 163.7 13.8 149 47-263 213-370 (449)
167 TIGR03594 GTPase_EngA ribosome 99.7 1.6E-17 3.5E-22 160.6 14.8 160 48-262 171-343 (429)
168 cd01895 EngA2 EngA2 subfamily. 99.7 5E-17 1.1E-21 135.4 15.4 155 49-260 2-172 (174)
169 cd04163 Era Era subfamily. Er 99.7 5.2E-17 1.1E-21 133.9 14.5 156 49-262 3-168 (168)
170 cd01888 eIF2_gamma eIF2-gamma 99.7 3.7E-17 8E-22 143.3 14.1 158 50-263 1-199 (203)
171 PRK00089 era GTPase Era; Revie 99.7 9.6E-17 2.1E-21 147.9 17.3 157 50-266 6-174 (292)
172 PRK11058 GTPase HflX; Provisio 99.7 5.9E-17 1.3E-21 157.1 15.6 153 50-265 198-364 (426)
173 TIGR00475 selB selenocysteine- 99.7 1E-16 2.2E-21 161.0 16.4 155 50-262 1-165 (581)
174 TIGR00487 IF-2 translation ini 99.7 9.8E-17 2.1E-21 160.9 15.4 113 47-165 85-200 (587)
175 CHL00189 infB translation init 99.7 2.1E-16 4.5E-21 161.4 16.9 161 46-261 241-408 (742)
176 PRK12297 obgE GTPase CgtA; Rev 99.7 2.2E-16 4.7E-21 152.8 15.7 155 50-265 159-329 (424)
177 cd04105 SR_beta Signal recogni 99.7 1.2E-16 2.7E-21 140.1 12.4 118 51-169 2-126 (203)
178 KOG0071 GTP-binding ADP-ribosy 99.7 3.2E-16 6.9E-21 128.1 13.6 171 25-263 5-178 (180)
179 PF02421 FeoB_N: Ferrous iron 99.7 1.3E-16 2.8E-21 134.7 11.7 148 50-258 1-156 (156)
180 KOG0075 GTP-binding ADP-ribosy 99.7 3.1E-17 6.7E-22 135.0 7.4 113 49-165 20-135 (186)
181 cd01876 YihA_EngB The YihA (En 99.7 4.8E-16 1.1E-20 128.5 14.4 152 51-261 1-169 (170)
182 PRK05306 infB translation init 99.7 3.6E-16 7.8E-21 160.8 15.8 158 46-260 287-449 (787)
183 PRK00093 GTP-binding protein D 99.7 3.7E-16 8E-21 151.6 14.8 147 50-261 2-160 (435)
184 cd00880 Era_like Era (E. coli 99.7 5.8E-16 1.3E-20 125.7 13.4 154 54-261 1-162 (163)
185 TIGR03594 GTPase_EngA ribosome 99.7 6.1E-16 1.3E-20 149.6 14.5 149 51-264 1-161 (429)
186 PRK00093 GTP-binding protein D 99.7 8E-16 1.7E-20 149.2 14.8 160 47-262 171-343 (435)
187 PRK05433 GTP-binding protein L 99.7 1.3E-15 2.8E-20 153.5 16.5 160 48-265 6-186 (600)
188 PRK12298 obgE GTPase CgtA; Rev 99.7 1.7E-15 3.6E-20 145.4 16.5 158 50-265 160-335 (390)
189 PRK09518 bifunctional cytidyla 99.7 1.7E-15 3.6E-20 155.7 17.2 159 48-263 449-621 (712)
190 COG2229 Predicted GTPase [Gene 99.7 2E-15 4.4E-20 128.7 14.3 156 46-261 7-176 (187)
191 TIGR00483 EF-1_alpha translati 99.7 8.5E-16 1.8E-20 149.1 13.7 149 48-236 6-192 (426)
192 KOG1707 Predicted Ras related/ 99.7 5.4E-16 1.2E-20 151.2 11.6 165 46-265 6-177 (625)
193 cd04167 Snu114p Snu114p subfam 99.7 3.7E-15 8E-20 131.4 15.8 113 51-165 2-136 (213)
194 TIGR00491 aIF-2 translation in 99.7 2.8E-15 6.2E-20 150.4 16.9 112 50-166 5-135 (590)
195 PRK12296 obgE GTPase CgtA; Rev 99.7 2.3E-15 5E-20 147.8 15.9 157 49-264 159-341 (500)
196 PRK09518 bifunctional cytidyla 99.7 1.4E-15 3.1E-20 156.1 14.8 156 46-264 272-437 (712)
197 TIGR00437 feoB ferrous iron tr 99.6 1.3E-15 2.9E-20 153.2 13.7 146 56-262 1-154 (591)
198 cd01896 DRG The developmentall 99.6 4.7E-15 1E-19 133.0 15.3 89 51-142 2-99 (233)
199 cd04166 CysN_ATPS CysN_ATPS su 99.6 2.4E-15 5.1E-20 132.3 12.2 113 51-166 1-144 (208)
200 TIGR03680 eif2g_arch translati 99.6 3.9E-15 8.4E-20 143.7 12.5 159 48-262 3-195 (406)
201 PRK10512 selenocysteinyl-tRNA- 99.6 1.8E-14 3.8E-19 145.6 16.9 155 51-264 2-167 (614)
202 PRK04004 translation initiatio 99.6 2.1E-14 4.6E-19 144.3 17.3 114 48-166 5-137 (586)
203 PRK12317 elongation factor 1-a 99.6 4.7E-15 1E-19 143.8 12.2 117 48-166 5-153 (425)
204 PRK09554 feoB ferrous iron tra 99.6 1.4E-14 3.1E-19 149.4 15.9 153 49-262 3-167 (772)
205 KOG0074 GTP-binding ADP-ribosy 99.6 4.8E-15 1E-19 121.4 9.3 119 47-169 15-136 (185)
206 PF00009 GTP_EFTU: Elongation 99.6 1.2E-14 2.5E-19 125.6 12.4 157 49-262 3-186 (188)
207 PRK04000 translation initiatio 99.6 2E-14 4.3E-19 139.0 14.9 161 47-263 7-201 (411)
208 COG1159 Era GTPase [General fu 99.6 3E-14 6.5E-19 130.0 14.2 167 50-276 7-185 (298)
209 PRK10218 GTP-binding protein; 99.6 5.8E-14 1.3E-18 141.4 17.5 118 47-166 3-134 (607)
210 PF10662 PduV-EutP: Ethanolami 99.6 4.1E-14 8.8E-19 117.5 12.0 135 51-259 3-142 (143)
211 TIGR01394 TypA_BipA GTP-bindin 99.6 4.9E-14 1.1E-18 141.8 15.0 170 51-265 3-193 (594)
212 KOG0076 GTP-binding ADP-ribosy 99.6 4E-15 8.7E-20 125.6 5.3 159 50-265 18-189 (197)
213 cd01884 EF_Tu EF-Tu subfamily. 99.5 1.9E-13 4E-18 119.6 14.9 116 49-165 2-131 (195)
214 cd04168 TetM_like Tet(M)-like 99.5 1.4E-13 3.1E-18 123.8 14.4 195 51-262 1-234 (237)
215 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 5.8E-13 1.3E-17 119.4 17.5 168 51-270 1-183 (232)
216 KOG0072 GTP-binding ADP-ribosy 99.5 2.3E-14 4.9E-19 117.8 7.4 160 48-263 17-179 (182)
217 cd01883 EF1_alpha Eukaryotic e 99.5 1.4E-13 3E-18 122.1 13.0 112 51-165 1-150 (219)
218 TIGR00485 EF-Tu translation el 99.5 2.2E-13 4.7E-18 131.1 15.2 167 47-262 10-200 (394)
219 cd04104 p47_IIGP_like p47 (47- 99.5 6.3E-13 1.4E-17 115.9 15.8 171 50-265 2-186 (197)
220 COG1160 Predicted GTPases [Gen 99.5 2.6E-13 5.5E-18 130.1 13.9 162 48-262 177-350 (444)
221 COG0486 ThdF Predicted GTPase 99.5 2.5E-13 5.4E-18 130.5 13.5 157 45-265 213-378 (454)
222 cd01850 CDC_Septin CDC/Septin. 99.5 4.4E-13 9.5E-18 123.2 14.6 115 49-166 4-157 (276)
223 PRK12735 elongation factor Tu; 99.5 6.3E-13 1.4E-17 128.0 15.9 170 48-262 11-202 (396)
224 PRK12736 elongation factor Tu; 99.5 8.9E-13 1.9E-17 126.9 15.7 167 48-263 11-201 (394)
225 cd01885 EF2 EF2 (for archaea a 99.5 6.7E-13 1.5E-17 118.3 13.2 113 51-165 2-138 (222)
226 COG0218 Predicted GTPase [Gene 99.5 1.3E-12 2.8E-17 113.5 13.7 118 45-167 20-150 (200)
227 COG1160 Predicted GTPases [Gen 99.4 6.2E-13 1.3E-17 127.5 11.5 148 50-262 4-164 (444)
228 KOG1423 Ras-like GTPase ERA [C 99.4 1.8E-12 4E-17 118.5 13.4 122 45-168 68-201 (379)
229 cd04165 GTPBP1_like GTPBP1-lik 99.4 4.4E-12 9.5E-17 113.2 14.8 114 51-166 1-152 (224)
230 PLN00043 elongation factor 1-a 99.4 5.4E-12 1.2E-16 123.3 15.6 149 49-236 7-198 (447)
231 cd04169 RF3 RF3 subfamily. Pe 99.4 3.7E-12 8E-17 116.6 13.0 114 51-166 4-137 (267)
232 TIGR02034 CysN sulfate adenyly 99.4 3.9E-12 8.5E-17 122.9 13.1 114 50-166 1-147 (406)
233 PF09439 SRPRB: Signal recogni 99.4 7.1E-13 1.5E-17 114.4 6.8 116 50-168 4-128 (181)
234 smart00010 small_GTPase Small 99.4 5.4E-13 1.2E-17 105.9 5.2 86 50-164 1-89 (124)
235 PRK13351 elongation factor G; 99.4 5.3E-12 1.2E-16 129.4 13.8 115 47-167 6-140 (687)
236 CHL00071 tufA elongation facto 99.4 1.3E-11 2.8E-16 119.4 15.4 118 48-166 11-142 (409)
237 cd04170 EF-G_bact Elongation f 99.4 1.7E-12 3.8E-17 118.3 8.3 112 51-166 1-130 (268)
238 PRK05124 cysN sulfate adenylyl 99.4 8.9E-12 1.9E-16 122.6 13.7 117 47-166 25-174 (474)
239 cd01899 Ygr210 Ygr210 subfamil 99.3 1.3E-11 2.8E-16 115.6 13.7 81 52-132 1-110 (318)
240 PRK00049 elongation factor Tu; 99.3 3.1E-11 6.7E-16 116.3 16.4 116 48-166 11-142 (396)
241 PF01926 MMR_HSR1: 50S ribosom 99.3 1.6E-11 3.5E-16 97.5 12.1 103 51-161 1-116 (116)
242 PRK00741 prfC peptide chain re 99.3 1.5E-11 3.2E-16 122.5 14.5 118 47-166 8-145 (526)
243 PLN03126 Elongation factor Tu; 99.3 2.1E-11 4.5E-16 120.1 14.8 117 47-166 79-211 (478)
244 PRK05506 bifunctional sulfate 99.3 1.2E-11 2.5E-16 125.8 13.2 115 49-166 24-171 (632)
245 COG0370 FeoB Fe2+ transport sy 99.3 6.5E-11 1.4E-15 118.3 15.6 155 49-264 3-165 (653)
246 COG1084 Predicted GTPase [Gene 99.3 9.6E-11 2.1E-15 108.4 14.8 115 48-165 167-293 (346)
247 TIGR00484 EF-G translation elo 99.3 1.3E-10 2.8E-15 119.3 16.3 117 46-166 7-141 (689)
248 COG2262 HflX GTPases [General 99.2 1.4E-10 3.1E-15 110.0 14.7 153 48-263 191-356 (411)
249 cd01886 EF-G Elongation factor 99.2 7.1E-11 1.5E-15 108.3 12.1 112 51-166 1-130 (270)
250 COG0532 InfB Translation initi 99.2 1.4E-10 3E-15 113.1 14.5 156 49-260 5-167 (509)
251 KOG0462 Elongation factor-type 99.2 1.3E-10 2.8E-15 113.3 14.0 168 47-270 58-242 (650)
252 KOG0077 Vesicle coat complex C 99.2 5.1E-11 1.1E-15 100.3 8.9 112 50-166 21-135 (193)
253 PLN03127 Elongation factor Tu; 99.2 2.7E-10 5.9E-15 111.4 15.5 116 48-166 60-191 (447)
254 TIGR00503 prfC peptide chain r 99.2 4.6E-11 9.9E-16 118.9 10.2 119 46-166 8-146 (527)
255 PTZ00327 eukaryotic translatio 99.2 1.4E-10 3.1E-15 113.6 13.3 166 45-263 30-233 (460)
256 PTZ00141 elongation factor 1- 99.2 1.6E-10 3.5E-15 113.0 13.2 114 49-164 7-157 (446)
257 KOG1490 GTP-binding protein CR 99.2 2.4E-11 5.1E-16 117.3 6.9 165 49-267 168-345 (620)
258 KOG1489 Predicted GTP-binding 99.2 3E-10 6.5E-15 104.6 13.4 154 47-260 194-364 (366)
259 PRK14845 translation initiatio 99.2 2.2E-10 4.8E-15 121.0 14.4 105 60-169 472-595 (1049)
260 KOG1191 Mitochondrial GTPase [ 99.2 1.1E-10 2.3E-15 112.8 9.9 119 46-167 265-404 (531)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 4.6E-10 9.9E-15 97.6 13.1 114 50-167 1-131 (196)
262 TIGR00157 ribosome small subun 99.2 2E-10 4.3E-15 103.9 10.2 98 108-261 23-121 (245)
263 COG1163 DRG Predicted GTPase [ 99.1 1.5E-09 3.2E-14 100.4 15.3 97 45-144 59-164 (365)
264 PRK09602 translation-associate 99.1 1.5E-09 3.2E-14 104.7 15.9 83 50-132 2-113 (396)
265 COG3596 Predicted GTPase [Gene 99.1 2.3E-10 5E-15 103.7 9.2 179 43-263 33-222 (296)
266 COG0481 LepA Membrane GTPase L 99.1 8.6E-10 1.9E-14 106.2 13.3 158 51-266 11-189 (603)
267 COG4917 EutP Ethanolamine util 99.1 2.3E-10 5.1E-15 92.2 7.7 136 51-260 3-143 (148)
268 KOG3905 Dynein light intermedi 99.1 2.3E-09 5E-14 99.1 15.2 176 43-264 46-291 (473)
269 PRK12739 elongation factor G; 99.1 9.6E-10 2.1E-14 113.0 14.1 117 46-166 5-139 (691)
270 KOG0090 Signal recognition par 99.1 3.5E-10 7.6E-15 98.9 9.2 115 50-169 39-162 (238)
271 PF05783 DLIC: Dynein light in 99.1 3.9E-09 8.5E-14 103.5 17.1 172 48-265 24-266 (472)
272 PRK12740 elongation factor G; 99.1 1.3E-09 2.8E-14 111.6 14.0 109 55-167 1-127 (668)
273 TIGR00490 aEF-2 translation el 99.1 3E-10 6.5E-15 117.2 9.3 118 47-166 17-152 (720)
274 KOG1145 Mitochondrial translat 99.1 3.1E-09 6.7E-14 103.8 14.6 152 49-260 153-313 (683)
275 PRK09866 hypothetical protein; 99.0 9.3E-09 2E-13 103.1 17.1 112 100-262 232-352 (741)
276 COG0536 Obg Predicted GTPase [ 99.0 4E-09 8.7E-14 98.2 13.1 159 50-266 160-336 (369)
277 PRK00007 elongation factor G; 99.0 5.9E-09 1.3E-13 107.2 15.4 117 46-166 7-141 (693)
278 COG5256 TEF1 Translation elong 99.0 2.5E-09 5.4E-14 101.7 11.4 151 48-236 6-196 (428)
279 PRK13768 GTPase; Provisional 99.0 2.7E-09 5.9E-14 96.9 11.3 136 99-263 98-247 (253)
280 KOG1707 Predicted Ras related/ 99.0 1.1E-08 2.3E-13 100.6 14.9 120 45-166 421-540 (625)
281 cd00066 G-alpha G protein alph 99.0 7.2E-09 1.6E-13 97.1 12.9 139 97-265 160-313 (317)
282 cd01882 BMS1 Bms1. Bms1 is an 99.0 1.1E-08 2.3E-13 91.3 13.3 112 46-166 36-147 (225)
283 KOG0705 GTPase-activating prot 99.0 1.2E-09 2.5E-14 106.6 7.2 159 48-265 29-191 (749)
284 KOG3886 GTP-binding protein [S 98.9 3.6E-09 7.7E-14 93.8 8.9 165 50-266 5-181 (295)
285 TIGR00101 ureG urease accessor 98.9 2.4E-08 5.1E-13 87.7 13.7 84 122-263 113-196 (199)
286 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.1E-08 2.3E-13 95.2 11.6 117 47-166 36-167 (313)
287 cd01853 Toc34_like Toc34-like 98.9 1.2E-08 2.6E-13 92.5 11.0 119 45-168 27-165 (249)
288 PTZ00258 GTP-binding protein; 98.8 7.6E-08 1.6E-12 92.4 14.6 86 46-131 18-125 (390)
289 PF04548 AIG1: AIG1 family; I 98.8 6.4E-08 1.4E-12 85.5 12.7 113 50-167 1-131 (212)
290 PF05049 IIGP: Interferon-indu 98.8 6.9E-08 1.5E-12 92.0 13.0 175 49-265 35-220 (376)
291 PRK09435 membrane ATPase/prote 98.7 5.4E-08 1.2E-12 91.7 9.9 105 97-262 148-259 (332)
292 PTZ00416 elongation factor 2; 98.7 4.9E-08 1.1E-12 102.4 9.6 118 46-165 16-157 (836)
293 COG2895 CysN GTPases - Sulfate 98.7 2.4E-07 5.3E-12 86.7 12.9 147 48-236 5-188 (431)
294 PF03029 ATP_bind_1: Conserved 98.7 4.8E-08 1E-12 88.1 7.8 68 99-166 92-170 (238)
295 PF00350 Dynamin_N: Dynamin fa 98.7 1.9E-07 4.1E-12 78.3 11.0 62 100-162 103-168 (168)
296 COG1217 TypA Predicted membran 98.7 5.7E-07 1.2E-11 86.8 14.7 171 50-267 6-199 (603)
297 PLN00116 translation elongatio 98.7 8.4E-08 1.8E-12 100.7 9.6 118 46-165 16-163 (843)
298 PRK09601 GTP-binding protein Y 98.7 6.7E-07 1.5E-11 85.1 14.8 83 50-132 3-107 (364)
299 KOG0458 Elongation factor 1 al 98.7 3.1E-07 6.8E-12 90.5 12.7 153 45-236 173-367 (603)
300 TIGR00750 lao LAO/AO transport 98.6 2.4E-07 5.3E-12 86.1 11.3 34 38-71 23-56 (300)
301 TIGR00073 hypB hydrogenase acc 98.6 2.3E-07 5E-12 81.5 10.3 24 49-72 22-45 (207)
302 PRK07560 elongation factor EF- 98.6 1.2E-07 2.5E-12 98.3 9.1 117 47-165 18-152 (731)
303 PF00735 Septin: Septin; Inte 98.6 1.4E-06 3E-11 80.5 14.5 115 49-166 4-156 (281)
304 KOG1144 Translation initiation 98.6 2.7E-07 5.8E-12 93.0 10.2 116 48-168 474-608 (1064)
305 COG1126 GlnQ ABC-type polar am 98.6 2.7E-07 5.9E-12 81.4 8.5 167 31-267 10-188 (240)
306 KOG0461 Selenocysteine-specifi 98.5 2E-06 4.4E-11 80.4 14.3 167 48-266 6-196 (522)
307 COG5257 GCD11 Translation init 98.5 5.3E-07 1.1E-11 83.6 9.8 163 47-265 8-204 (415)
308 TIGR02836 spore_IV_A stage IV 98.5 3E-06 6.5E-11 81.6 15.3 116 48-164 16-192 (492)
309 cd01855 YqeH YqeH. YqeH is an 98.5 2.9E-07 6.4E-12 79.4 6.8 93 110-262 23-124 (190)
310 KOG1532 GTPase XAB1, interacts 98.5 2E-06 4.3E-11 78.4 11.7 28 44-71 14-41 (366)
311 cd01859 MJ1464 MJ1464. This f 98.4 6.6E-07 1.4E-11 74.7 7.5 93 112-262 3-95 (156)
312 smart00275 G_alpha G protein a 98.4 3.2E-06 7E-11 80.1 13.0 137 97-264 183-335 (342)
313 KOG0082 G-protein alpha subuni 98.4 4.2E-06 9.2E-11 79.1 13.5 137 98-265 195-346 (354)
314 TIGR00993 3a0901s04IAP86 chlor 98.4 1.8E-06 4E-11 87.1 11.4 117 46-166 115-250 (763)
315 PRK12289 GTPase RsgA; Reviewed 98.4 1.4E-06 3.1E-11 82.8 9.7 96 110-262 78-174 (352)
316 smart00053 DYNc Dynamin, GTPas 98.4 2.9E-06 6.2E-11 76.7 11.1 26 49-74 26-51 (240)
317 TIGR03597 GTPase_YqeH ribosome 98.4 8.3E-07 1.8E-11 84.7 7.9 98 108-261 50-151 (360)
318 cd01854 YjeQ_engC YjeQ/EngC. 98.4 2.3E-06 5.1E-11 79.1 9.7 88 117-261 74-162 (287)
319 COG5019 CDC3 Septin family pro 98.3 7.6E-06 1.6E-10 77.2 12.2 115 49-166 23-176 (373)
320 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.2E-06 2.5E-11 72.3 6.0 54 51-108 85-138 (141)
321 PRK00098 GTPase RsgA; Reviewed 98.3 3.3E-06 7.3E-11 78.5 9.4 87 119-261 78-165 (298)
322 COG4108 PrfC Peptide chain rel 98.2 2.5E-05 5.4E-10 75.2 14.0 122 46-169 9-150 (528)
323 PF03308 ArgK: ArgK protein; 98.2 1.2E-06 2.6E-11 79.4 4.5 56 98-164 122-179 (266)
324 COG0378 HypB Ni2+-binding GTPa 98.2 1E-05 2.2E-10 70.4 10.0 23 49-71 13-35 (202)
325 PRK12288 GTPase RsgA; Reviewed 98.2 1E-05 2.2E-10 76.9 10.7 90 119-262 118-207 (347)
326 COG0012 Predicted GTPase, prob 98.2 5.8E-05 1.3E-09 71.6 15.1 84 49-132 2-108 (372)
327 cd01900 YchF YchF subfamily. 98.2 2.9E-06 6.4E-11 78.0 5.7 80 52-131 1-102 (274)
328 KOG0410 Predicted GTP binding 98.1 3.6E-06 7.8E-11 78.2 6.0 154 49-270 178-348 (410)
329 COG3276 SelB Selenocysteine-sp 98.1 2E-05 4.3E-10 75.9 11.2 152 51-262 2-161 (447)
330 KOG0468 U5 snRNP-specific prot 98.1 5.3E-06 1.1E-10 83.1 7.4 118 46-165 125-262 (971)
331 cd01859 MJ1464 MJ1464. This f 98.1 8.5E-06 1.8E-10 67.9 7.4 57 48-108 100-156 (156)
332 cd01858 NGP_1 NGP-1. Autoanti 98.1 8.7E-06 1.9E-10 68.1 7.3 57 48-108 101-157 (157)
333 cd01856 YlqF YlqF. Proteins o 98.1 7.5E-06 1.6E-10 69.6 6.8 57 48-108 114-170 (171)
334 COG4598 HisP ABC-type histidin 98.1 1.6E-05 3.5E-10 68.7 8.4 166 31-266 14-203 (256)
335 PRK10463 hydrogenase nickel in 98.1 1.5E-05 3.3E-10 73.7 8.4 28 45-72 100-127 (290)
336 KOG1547 Septin CDC10 and relat 98.1 5.9E-05 1.3E-09 67.7 11.6 66 43-108 40-114 (336)
337 COG0480 FusA Translation elong 98.0 1.5E-05 3.3E-10 81.8 8.6 120 46-168 7-144 (697)
338 KOG2655 Septin family protein 98.0 9.3E-05 2E-09 70.2 13.2 117 48-167 20-173 (366)
339 cd04178 Nucleostemin_like Nucl 98.0 1.4E-05 3.1E-10 68.5 7.2 58 47-108 115-172 (172)
340 cd01855 YqeH YqeH. YqeH is an 98.0 1.1E-05 2.3E-10 69.6 6.2 58 48-108 126-190 (190)
341 KOG1954 Endocytosis/signaling 98.0 4.5E-05 9.7E-10 72.2 10.0 123 43-166 52-225 (532)
342 KOG1486 GTP-binding protein DR 98.0 0.00053 1.1E-08 62.1 15.9 89 46-138 59-156 (364)
343 cd01858 NGP_1 NGP-1. Autoanti 97.9 4.2E-05 9.1E-10 64.0 8.4 47 118-166 5-53 (157)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 3.7E-05 8.1E-10 63.2 7.5 48 117-166 7-56 (141)
345 COG1703 ArgK Putative periplas 97.9 0.0001 2.2E-09 68.1 10.8 153 47-262 49-253 (323)
346 cd01849 YlqF_related_GTPase Yl 97.9 5.6E-05 1.2E-09 63.2 8.3 83 123-262 1-84 (155)
347 TIGR03596 GTPase_YlqF ribosome 97.9 3.3E-05 7.1E-10 71.0 7.4 57 48-108 117-173 (276)
348 PRK09563 rbgA GTPase YlqF; Rev 97.9 3.8E-05 8.2E-10 71.0 7.8 59 47-109 119-177 (287)
349 COG5192 BMS1 GTP-binding prote 97.8 0.00015 3.2E-09 71.9 10.9 118 43-169 63-180 (1077)
350 KOG3887 Predicted small GTPase 97.8 0.00022 4.8E-09 64.2 11.0 121 42-166 18-149 (347)
351 cd01849 YlqF_related_GTPase Yl 97.8 8.6E-05 1.9E-09 62.0 7.2 57 47-108 98-155 (155)
352 COG0050 TufB GTPases - transla 97.8 0.00043 9.4E-09 63.9 12.1 113 50-166 13-142 (394)
353 COG1116 TauB ABC-type nitrate/ 97.7 0.0001 2.2E-09 66.5 7.5 44 31-74 11-54 (248)
354 COG1161 Predicted GTPases [Gen 97.7 6.2E-05 1.3E-09 70.9 6.5 56 49-108 132-187 (322)
355 PRK13796 GTPase YqeH; Provisio 97.7 0.00016 3.4E-09 69.2 8.5 96 109-261 57-157 (365)
356 KOG2486 Predicted GTPase [Gene 97.6 4.7E-05 1E-09 69.6 4.1 116 46-167 133-263 (320)
357 TIGR03348 VI_IcmF type VI secr 97.6 0.00014 3.1E-09 79.2 8.2 112 50-167 112-258 (1169)
358 PF03193 DUF258: Protein of un 97.6 7.5E-05 1.6E-09 63.5 4.3 24 50-73 36-59 (161)
359 KOG0448 Mitofusin 1 GTPase, in 97.5 0.00082 1.8E-08 68.0 11.2 117 49-167 109-276 (749)
360 COG2884 FtsE Predicted ATPase 97.5 0.00087 1.9E-08 58.5 10.0 39 36-74 15-53 (223)
361 cd01856 YlqF YlqF. Proteins o 97.5 0.00024 5.2E-09 60.3 6.4 87 116-262 14-100 (171)
362 PRK12288 GTPase RsgA; Reviewed 97.5 0.00019 4E-09 68.3 5.9 23 52-74 208-230 (347)
363 PF00503 G-alpha: G-protein al 97.4 0.00083 1.8E-08 64.6 10.0 69 97-165 235-316 (389)
364 COG1117 PstB ABC-type phosphat 97.4 0.00012 2.5E-09 64.9 3.7 43 31-73 15-57 (253)
365 PRK12289 GTPase RsgA; Reviewed 97.4 0.00027 5.9E-09 67.3 6.1 23 52-74 175-197 (352)
366 KOG0467 Translation elongation 97.4 0.0003 6.6E-09 71.7 6.2 109 50-164 10-136 (887)
367 PRK10416 signal recognition pa 97.4 0.001 2.2E-08 62.6 9.4 24 48-71 113-136 (318)
368 TIGR00157 ribosome small subun 97.4 0.00033 7.1E-09 63.4 5.7 24 50-73 121-144 (245)
369 cd01851 GBP Guanylate-binding 97.4 0.00082 1.8E-08 60.0 8.1 60 50-110 8-72 (224)
370 TIGR03597 GTPase_YqeH ribosome 97.3 0.00045 9.7E-09 66.0 6.4 59 49-110 154-216 (360)
371 TIGR03596 GTPase_YlqF ribosome 97.3 0.0012 2.5E-08 60.7 8.8 87 116-262 16-102 (276)
372 COG3839 MalK ABC-type sugar tr 97.3 0.00022 4.7E-09 67.4 3.9 45 30-74 10-54 (338)
373 PRK13796 GTPase YqeH; Provisio 97.3 0.00038 8.3E-09 66.6 5.5 58 49-109 160-221 (365)
374 COG3842 PotA ABC-type spermidi 97.3 0.00024 5.2E-09 67.5 4.0 45 30-74 12-56 (352)
375 TIGR00092 GTP-binding protein 97.3 0.00068 1.5E-08 64.8 6.9 83 50-132 3-108 (368)
376 KOG0057 Mitochondrial Fe/S clu 97.2 0.00059 1.3E-08 67.6 6.4 41 31-71 359-400 (591)
377 PRK01889 GTPase RsgA; Reviewed 97.2 0.0018 3.9E-08 61.8 9.6 48 118-166 109-156 (356)
378 TIGR00064 ftsY signal recognit 97.2 0.002 4.3E-08 59.2 9.0 65 97-166 154-231 (272)
379 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0025 5.5E-08 54.9 9.0 120 31-163 8-133 (177)
380 KOG0460 Mitochondrial translat 97.1 0.0066 1.4E-07 57.3 11.8 115 48-166 53-184 (449)
381 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.0011 2.3E-08 61.5 6.5 25 50-74 162-186 (287)
382 PRK09563 rbgA GTPase YlqF; Rev 97.1 0.0021 4.5E-08 59.5 8.4 87 116-262 19-105 (287)
383 KOG1487 GTP-binding protein DR 97.1 0.0051 1.1E-07 56.1 10.5 88 50-141 60-156 (358)
384 COG3640 CooC CO dehydrogenase 97.1 0.0041 9E-08 55.8 9.7 63 99-165 135-198 (255)
385 cd03264 ABC_drug_resistance_li 97.1 0.00047 1E-08 60.3 3.7 41 32-73 9-49 (211)
386 COG1162 Predicted GTPases [Gen 97.1 0.00088 1.9E-08 62.2 5.6 57 52-111 167-229 (301)
387 COG3638 ABC-type phosphate/pho 97.1 0.00055 1.2E-08 61.5 4.0 41 31-71 11-52 (258)
388 COG1136 SalX ABC-type antimicr 97.1 0.0006 1.3E-08 61.0 4.1 38 37-74 19-56 (226)
389 cd03226 ABC_cobalt_CbiO_domain 97.1 0.00058 1.3E-08 59.5 4.0 42 32-73 8-50 (205)
390 cd03260 ABC_PstB_phosphate_tra 97.1 0.00057 1.2E-08 60.5 4.0 42 32-73 9-50 (227)
391 PRK14974 cell division protein 97.1 0.0019 4.1E-08 61.2 7.7 64 98-166 223-293 (336)
392 TIGR01166 cbiO cobalt transpor 97.1 0.00059 1.3E-08 58.8 3.9 41 33-73 2-42 (190)
393 cd03265 ABC_DrrA DrrA is the A 97.1 0.0006 1.3E-08 60.1 4.1 42 32-73 9-50 (220)
394 cd03261 ABC_Org_Solvent_Resist 97.1 0.00056 1.2E-08 60.9 3.9 42 32-73 9-50 (235)
395 KOG1491 Predicted GTP-binding 97.1 0.0017 3.7E-08 61.1 7.1 85 48-132 19-125 (391)
396 PRK13695 putative NTPase; Prov 97.1 0.0095 2.1E-07 50.5 11.3 22 50-71 1-22 (174)
397 cd03224 ABC_TM1139_LivF_branch 97.0 0.00053 1.2E-08 60.3 3.7 42 32-73 9-50 (222)
398 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00061 1.3E-08 59.5 4.0 42 32-73 8-51 (211)
399 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.0006 1.3E-08 59.9 3.9 38 36-73 17-54 (218)
400 cd03259 ABC_Carb_Solutes_like 97.0 0.00062 1.4E-08 59.6 4.0 42 32-73 9-50 (213)
401 cd03301 ABC_MalK_N The N-termi 97.0 0.00064 1.4E-08 59.5 4.1 42 32-73 9-50 (213)
402 COG1120 FepC ABC-type cobalami 97.0 0.00062 1.3E-08 62.1 4.0 42 31-72 10-51 (258)
403 cd03262 ABC_HisP_GlnQ_permease 97.0 0.0007 1.5E-08 59.2 4.2 42 32-73 9-50 (213)
404 TIGR03608 L_ocin_972_ABC putat 97.0 0.00065 1.4E-08 59.1 3.9 42 32-73 7-48 (206)
405 cd03269 ABC_putative_ATPase Th 97.0 0.00065 1.4E-08 59.3 3.9 42 32-73 9-50 (210)
406 cd03218 ABC_YhbG The ABC trans 97.0 0.00071 1.5E-08 60.0 4.1 42 32-73 9-50 (232)
407 cd03267 ABC_NatA_like Similar 97.0 0.00074 1.6E-08 60.4 4.1 47 27-73 25-71 (236)
408 PRK00098 GTPase RsgA; Reviewed 97.0 0.0013 2.9E-08 61.1 5.9 26 49-74 164-189 (298)
409 cd03216 ABC_Carb_Monos_I This 97.0 0.00073 1.6E-08 57.0 3.8 42 32-73 9-50 (163)
410 PRK11247 ssuB aliphatic sulfon 97.0 0.00072 1.6E-08 61.5 4.0 42 32-73 21-62 (257)
411 COG1124 DppF ABC-type dipeptid 97.0 0.00073 1.6E-08 60.8 3.9 44 31-74 11-58 (252)
412 TIGR02315 ABC_phnC phosphonate 97.0 0.00078 1.7E-08 60.1 4.2 42 32-73 10-52 (243)
413 cd03235 ABC_Metallic_Cations A 97.0 0.00072 1.6E-08 59.2 3.8 42 32-73 8-49 (213)
414 cd03219 ABC_Mj1267_LivG_branch 97.0 0.00073 1.6E-08 60.1 3.9 42 32-73 9-50 (236)
415 cd03257 ABC_NikE_OppD_transpor 97.0 0.00084 1.8E-08 59.2 4.2 37 37-73 19-55 (228)
416 cd03256 ABC_PhnC_transporter A 97.0 0.00083 1.8E-08 59.8 4.1 42 32-73 9-51 (241)
417 TIGR01189 ccmA heme ABC export 97.0 0.00081 1.8E-08 58.3 3.9 42 32-73 9-50 (198)
418 PRK11124 artP arginine transpo 97.0 0.00082 1.8E-08 60.1 4.0 42 32-73 11-52 (242)
419 TIGR03410 urea_trans_UrtE urea 97.0 0.00082 1.8E-08 59.6 4.0 42 32-73 9-50 (230)
420 PRK13540 cytochrome c biogenes 96.9 0.00084 1.8E-08 58.4 4.0 42 32-73 10-51 (200)
421 TIGR01978 sufC FeS assembly AT 96.9 0.00084 1.8E-08 59.9 4.0 41 32-72 9-49 (243)
422 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.9 0.00078 1.7E-08 59.8 3.6 43 31-73 30-72 (224)
423 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.00083 1.8E-08 59.2 3.8 38 36-73 17-54 (220)
424 cd03268 ABC_BcrA_bacitracin_re 96.9 0.0009 2E-08 58.4 3.9 42 32-73 9-50 (208)
425 PRK10895 lipopolysaccharide AB 96.9 0.00085 1.9E-08 59.9 3.9 42 32-73 12-53 (241)
426 PRK11248 tauB taurine transpor 96.9 0.00089 1.9E-08 60.7 4.0 42 32-73 10-51 (255)
427 PRK14241 phosphate transporter 96.9 0.00084 1.8E-08 60.7 3.8 42 32-73 13-54 (258)
428 cd03263 ABC_subfamily_A The AB 96.9 0.00096 2.1E-08 58.6 4.1 42 32-73 9-52 (220)
429 cd03229 ABC_Class3 This class 96.9 0.00096 2.1E-08 57.0 3.9 42 32-73 9-50 (178)
430 PRK13539 cytochrome c biogenes 96.9 0.00095 2.1E-08 58.4 4.0 42 32-73 11-52 (207)
431 COG4525 TauB ABC-type taurine 96.9 0.0025 5.4E-08 56.1 6.4 42 32-73 12-55 (259)
432 TIGR01188 drrA daunorubicin re 96.9 0.00085 1.8E-08 62.3 3.9 42 32-73 2-43 (302)
433 cd03214 ABC_Iron-Siderophores_ 96.9 0.00096 2.1E-08 57.1 3.9 42 32-73 8-49 (180)
434 cd03231 ABC_CcmA_heme_exporter 96.9 0.001 2.2E-08 58.0 4.1 42 32-73 9-50 (201)
435 cd03296 ABC_CysA_sulfate_impor 96.9 0.00094 2E-08 59.6 3.9 42 32-73 11-52 (239)
436 PRK11264 putative amino-acid A 96.9 0.001 2.2E-08 59.7 4.1 42 32-73 12-53 (250)
437 PRK14247 phosphate ABC transpo 96.9 0.00098 2.1E-08 59.9 4.0 42 32-73 12-53 (250)
438 PRK14242 phosphate transporter 96.9 0.00094 2E-08 60.1 3.9 41 32-72 15-55 (253)
439 TIGR02673 FtsE cell division A 96.9 0.0011 2.3E-08 58.1 4.1 39 35-73 14-52 (214)
440 PRK13538 cytochrome c biogenes 96.9 0.001 2.2E-08 58.0 4.0 41 33-73 11-51 (204)
441 cd03266 ABC_NatA_sodium_export 96.9 0.0011 2.3E-08 58.3 4.1 37 37-73 19-55 (218)
442 PRK14267 phosphate ABC transpo 96.9 0.001 2.3E-08 59.8 4.1 42 32-73 13-54 (253)
443 cd03258 ABC_MetN_methionine_tr 96.9 0.0011 2.3E-08 58.9 4.1 37 37-73 19-55 (233)
444 PRK14273 phosphate ABC transpo 96.9 0.0011 2.4E-08 59.8 4.2 42 32-73 16-57 (254)
445 TIGR01288 nodI ATP-binding ABC 96.9 0.00099 2.1E-08 61.9 4.0 43 31-73 12-54 (303)
446 TIGR01425 SRP54_euk signal rec 96.9 0.0062 1.3E-07 59.5 9.6 113 50-166 101-253 (429)
447 TIGR03005 ectoine_ehuA ectoine 96.9 0.0011 2.3E-08 59.8 4.0 42 32-73 9-50 (252)
448 PRK10247 putative ABC transpor 96.9 0.0011 2.5E-08 58.6 4.1 42 32-73 16-57 (225)
449 TIGR03864 PQQ_ABC_ATP ABC tran 96.9 0.0011 2.3E-08 59.1 3.9 42 32-73 10-51 (236)
450 PRK13638 cbiO cobalt transport 96.8 0.0011 2.4E-08 60.4 4.1 42 32-73 10-51 (271)
451 PRK14274 phosphate ABC transpo 96.8 0.001 2.2E-08 60.2 3.8 42 32-73 21-62 (259)
452 PRK14250 phosphate ABC transpo 96.8 0.0011 2.5E-08 59.3 4.0 42 32-73 12-53 (241)
453 PRK14239 phosphate transporter 96.8 0.0011 2.4E-08 59.5 4.0 41 32-72 14-54 (252)
454 cd03112 CobW_like The function 96.8 0.0037 8.1E-08 52.6 6.9 22 51-72 2-23 (158)
455 cd03294 ABC_Pro_Gly_Bertaine T 96.8 0.00099 2.1E-08 60.8 3.6 43 31-73 32-74 (269)
456 PRK13543 cytochrome c biogenes 96.8 0.0012 2.6E-08 58.1 4.1 42 32-73 20-61 (214)
457 KOG1143 Predicted translation 96.8 0.0063 1.4E-07 58.0 8.9 181 50-258 168-383 (591)
458 PF00005 ABC_tran: ABC transpo 96.8 0.00084 1.8E-08 54.2 2.8 34 40-73 2-35 (137)
459 TIGR00972 3a0107s01c2 phosphat 96.8 0.0012 2.6E-08 59.2 4.1 42 32-73 10-51 (247)
460 cd03238 ABC_UvrA The excision 96.8 0.0011 2.3E-08 57.1 3.5 35 36-70 8-42 (176)
461 TIGR02323 CP_lyasePhnK phospho 96.8 0.0012 2.6E-08 59.4 3.9 42 32-73 12-53 (253)
462 PRK09580 sufC cysteine desulfu 96.8 0.0012 2.6E-08 59.1 4.0 42 32-73 10-51 (248)
463 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0013 2.9E-08 54.4 3.8 42 32-73 9-50 (144)
464 PRK10908 cell division protein 96.8 0.0014 3E-08 57.9 4.1 40 34-73 13-52 (222)
465 PRK14259 phosphate ABC transpo 96.8 0.0012 2.7E-08 60.2 3.9 42 32-73 22-63 (269)
466 PRK11300 livG leucine/isoleuci 96.8 0.0012 2.5E-08 59.5 3.7 42 32-73 14-55 (255)
467 PRK10744 pstB phosphate transp 96.8 0.0013 2.8E-08 59.6 4.0 42 32-73 22-63 (260)
468 cd03217 ABC_FeS_Assembly ABC-t 96.8 0.0014 3.1E-08 57.0 4.1 41 32-72 9-49 (200)
469 TIGR00960 3a0501s02 Type II (G 96.8 0.0013 2.9E-08 57.6 3.9 37 37-73 17-53 (216)
470 COG1125 OpuBA ABC-type proline 96.8 0.0011 2.3E-08 60.4 3.3 40 31-70 9-48 (309)
471 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0014 3E-08 55.7 3.9 41 33-73 10-50 (173)
472 PRK14240 phosphate transporter 96.8 0.0014 3E-08 58.9 4.0 42 32-73 12-53 (250)
473 PRK14251 phosphate ABC transpo 96.8 0.0014 3E-08 59.0 4.0 42 32-73 13-54 (251)
474 PRK14235 phosphate transporter 96.8 0.0013 2.7E-08 60.0 3.7 42 32-73 28-69 (267)
475 PRK13548 hmuV hemin importer A 96.8 0.0013 2.9E-08 59.6 3.9 42 32-73 11-52 (258)
476 COG1131 CcmA ABC-type multidru 96.8 0.0013 2.8E-08 61.1 3.9 45 30-74 11-56 (293)
477 PRK09493 glnQ glutamine ABC tr 96.8 0.0014 3.1E-08 58.5 4.0 42 32-73 10-51 (240)
478 PRK10575 iron-hydroxamate tran 96.8 0.0013 2.9E-08 59.8 3.8 42 32-73 20-61 (265)
479 PRK14262 phosphate ABC transpo 96.8 0.0015 3.2E-08 58.8 4.0 42 32-73 12-53 (250)
480 cd03292 ABC_FtsE_transporter F 96.8 0.0015 3.3E-08 57.1 4.0 38 36-73 14-51 (214)
481 PRK11701 phnK phosphonate C-P 96.7 0.0014 3.1E-08 59.2 3.9 42 32-73 15-56 (258)
482 PRK14248 phosphate ABC transpo 96.7 0.0015 3.2E-08 59.5 4.0 42 32-73 30-71 (268)
483 cd03295 ABC_OpuCA_Osmoprotecti 96.7 0.0015 3.3E-08 58.4 4.0 42 32-73 9-51 (242)
484 PRK14269 phosphate ABC transpo 96.7 0.0014 3.1E-08 58.7 3.9 42 32-73 11-52 (246)
485 PF09547 Spore_IV_A: Stage IV 96.7 0.081 1.7E-06 51.6 15.7 141 50-235 18-219 (492)
486 KOG0466 Translation initiation 96.7 0.00085 1.8E-08 62.3 2.3 163 45-263 34-241 (466)
487 PRK10253 iron-enterobactin tra 96.7 0.0014 3.1E-08 59.5 3.8 42 32-73 16-57 (265)
488 PRK14256 phosphate ABC transpo 96.7 0.0015 3.3E-08 58.8 4.0 42 32-73 13-54 (252)
489 TIGR02211 LolD_lipo_ex lipopro 96.7 0.0015 3.3E-08 57.4 3.9 37 37-73 19-55 (221)
490 COG5258 GTPBP1 GTPase [General 96.7 0.015 3.2E-07 55.8 10.5 122 45-168 113-271 (527)
491 PRK11614 livF leucine/isoleuci 96.7 0.0015 3.3E-08 58.2 3.8 42 32-73 14-55 (237)
492 PRK11231 fecE iron-dicitrate t 96.7 0.0015 3.3E-08 58.9 3.8 42 32-73 11-52 (255)
493 TIGR03411 urea_trans_UrtD urea 96.7 0.0016 3.4E-08 58.2 3.9 42 32-73 11-52 (242)
494 PRK14243 phosphate transporter 96.7 0.0016 3.5E-08 59.2 4.0 41 32-72 19-59 (264)
495 cd03114 ArgK-like The function 96.7 0.01 2.2E-07 49.5 8.6 58 97-163 91-148 (148)
496 PRK14265 phosphate ABC transpo 96.7 0.0016 3.4E-08 59.7 4.0 42 32-73 29-70 (274)
497 PRK09544 znuC high-affinity zi 96.7 0.0016 3.5E-08 58.9 3.9 42 32-73 13-54 (251)
498 PRK11432 fbpC ferric transport 96.7 0.0015 3.3E-08 62.2 3.9 43 32-74 15-57 (351)
499 PRK14722 flhF flagellar biosyn 96.7 0.01 2.2E-07 57.0 9.5 31 42-72 130-160 (374)
500 PRK14260 phosphate ABC transpo 96.7 0.0016 3.5E-08 59.0 3.9 42 32-73 16-57 (259)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-38 Score=267.41 Aligned_cols=174 Identities=23% Similarity=0.341 Sum_probs=158.1
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
.....+.+||+++|++|||||+|+.||..+.|.+.+..|+|+++...++..+++.++++||||+|||+|+++..+||++|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
||+|||||+|+.+||+.+..|+.+++++... |.++||||+|+. ..+.+
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~--------~~~~v---------------------- 132 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT--------EKRVV---------------------- 132 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH--------hheec----------------------
Confidence 9999999999999999999999999988654 899999999995 34555
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCe-EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIE-YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
+.++ ++.++..++++ |+|+|||++ .||++.|..|...+...+.+..
T Consensus 133 ----~~~~--------a~~fa~~~~~~~f~ETSAK~~------------~NVe~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 133 ----STEE--------AQEFADELGIPIFLETSAKDS------------TNVEDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred ----CHHH--------HHHHHHhcCCcceeecccCCc------------cCHHHHHHHHHHHHHHhcccCC
Confidence 4444 89999999998 999999999 9999999999998877665443
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-35 Score=252.64 Aligned_cols=167 Identities=19% Similarity=0.347 Sum_probs=152.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||++||+++||||||+.||..+.|.+...+|+|.-|...++.....++++.||||+|||+|+++.+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 34689999999999999999999999999888999999999999988888999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||+++.+||..+++|+.++++..++ .+.|||||+||.. .|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~--------~R~V-------------------------- 128 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE--------RREV-------------------------- 128 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh--------cccc--------------------------
Confidence 999999999999999999999998777 5566999999953 4556
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
+.++ +..++.+.|..|+|+|||++ .||+++|..|.+.+.+...
T Consensus 129 ~~~e--------a~~yAe~~gll~~ETSAKTg------------~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 129 EFEE--------AQAYAESQGLLFFETSAKTG------------ENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred cHHH--------HHHHHHhcCCEEEEEecccc------------cCHHHHHHHHHHhccCccc
Confidence 4444 89999999999999999999 9999999999998876653
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-35 Score=249.82 Aligned_cols=171 Identities=21% Similarity=0.350 Sum_probs=153.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+|++++|+.+|||||||+||..+.|...|..|+|.+|...++...+.++.+++|||+|||+|+++.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 34999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCC---eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~---~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||+++..||+....|++.++..+.. .|++||||.||.. .|++
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d--------krqv-------------------------- 146 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD--------KRQV-------------------------- 146 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc--------hhhh--------------------------
Confidence 99999999999999999999887654 6778999999964 5666
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCC
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGD 272 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~ 272 (289)
..++ +...+++++..|+|+||+.| .||.++|..+.+.+......+...
T Consensus 147 s~eE--------g~~kAkel~a~f~etsak~g------------~NVk~lFrrIaa~l~~~~~~~~~~ 194 (221)
T KOG0094|consen 147 SIEE--------GERKAKELNAEFIETSAKAG------------ENVKQLFRRIAAALPGMEVLEILS 194 (221)
T ss_pred hHHH--------HHHHHHHhCcEEEEecccCC------------CCHHHHHHHHHHhccCcccccccc
Confidence 4444 78889999999999999999 999999999888776665544333
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=251.12 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=157.5
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
...+.+|++++|+.|||||+|+.||....|.+.+..|+|++|....+..+++.++++||||+|||+|+++..+||+.|.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
++||||+++.+||..+..|+.+++.+..+ .++|+|||+|| +..|.|
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL--------~~rR~V------------------------ 129 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL--------EARREV------------------------ 129 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh--------hccccc------------------------
Confidence 99999999999999999999999988543 78889999999 446666
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
+.+| ++.||++||+.|+|+||+++ .||+++|......|++..+..-
T Consensus 130 --s~EE--------GeaFA~ehgLifmETSakt~------------~~VEEaF~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 130 --SKEE--------GEAFAREHGLIFMETSAKTA------------ENVEEAFINTAKEIYRKIQDGV 175 (216)
T ss_pred --cHHH--------HHHHHHHcCceeehhhhhhh------------hhHHHHHHHHHHHHHHHHHhcc
Confidence 5555 99999999999999999999 9999999999999887665544
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-35 Score=253.16 Aligned_cols=172 Identities=19% Similarity=0.311 Sum_probs=158.4
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.+...+||+++|+++||||+|+.||..+.|...+.+|+|++|...++..++..+.+++|||+||++|+.+...|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 56677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+++|||+++..||+.+..|+..|+.+.+. +++|||||+|+. ..|++
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~--------~~R~V------------------------ 135 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE--------EKRQV------------------------ 135 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc--------ccccc------------------------
Confidence 99999999999999999999999988764 899999999994 45666
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
+. ++++.+|.++|+.|+|||||+| .||++.|..|.+.++..+...+
T Consensus 136 --~~--------e~ge~lA~e~G~~F~EtSAk~~------------~NI~eaF~~La~~i~~k~~~~~ 181 (207)
T KOG0078|consen 136 --SK--------ERGEALAREYGIKFFETSAKTN------------FNIEEAFLSLARDILQKLEDAE 181 (207)
T ss_pred --cH--------HHHHHHHHHhCCeEEEccccCC------------CCHHHHHHHHHHHHHhhcchhh
Confidence 22 3399999999999999999999 9999999999999987666544
No 6
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=249.60 Aligned_cols=168 Identities=17% Similarity=0.383 Sum_probs=150.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+|+|++|||||||+++|.+.+|..++..|+|.+|.+..+..++..+.++||||+|||+|.++...+++++|++++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 34899999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCC------eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFE------ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~------~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
|||++++.||+.+.+|..++-.+..+ |+||+|||+|+..+. .|++
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~------~r~V----------------------- 138 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK------SRQV----------------------- 138 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc------ccee-----------------------
Confidence 99999999999999999998655432 999999999996532 2444
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
+.+ +|+.||...| ++|||+|||.. .||++.|..+.++.+.+..
T Consensus 139 ---S~~--------~Aq~WC~s~gnipyfEtSAK~~------------~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 139 ---SEK--------KAQTWCKSKGNIPYFETSAKEA------------TNVDEAFEEIARRALANED 182 (210)
T ss_pred ---eHH--------HHHHHHHhcCCceeEEeccccc------------ccHHHHHHHHHHHHHhccc
Confidence 333 3999999887 79999999999 9999999999999887753
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=238.81 Aligned_cols=173 Identities=23% Similarity=0.375 Sum_probs=156.5
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
..+...+||+++|.+|||||||+-+|..+.|.+....|+|.+|....+..++..+++-||||+|||+|+.+.++|+++|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 34556699999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHhhhcCCC---eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 124 ALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 124 ~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~---~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
++|+|||++.+++|..+..|+.++..+..+ ..++||||+|. +.+|.+
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk--------es~R~V---------------------- 135 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK--------ESERVV---------------------- 135 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc--------hhcccc----------------------
Confidence 999999999999999999999999888544 66789999997 556777
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
+.++ +..|+++|++-|+|||||+. +||+..|++|+..|+....+-+
T Consensus 136 ----~reE--------G~kfAr~h~~LFiE~SAkt~------------~~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 136 ----DREE--------GLKFARKHRCLFIECSAKTR------------ENVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred ----cHHH--------HHHHHHhhCcEEEEcchhhh------------ccHHHHHHHHHHHHhcCcchhh
Confidence 5555 89999999999999999999 9999999999988876654443
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.4e-33 Score=240.38 Aligned_cols=165 Identities=17% Similarity=0.272 Sum_probs=144.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|+.|||||||+++|..+.|...+.++.+.++....+..++..+.+++|||+|+++|+.++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999999998888888888887777777777899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||||++++.||+.+..|++.+....+. |+||||||+|+.. .+.+ +
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~--------~~~v--------------------------~ 129 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF--------KRQV--------------------------A 129 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh--------ccCC--------------------------C
Confidence 999999999999999999999766433 9999999999943 2223 2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+ .++.|++.++++|+||||++| .||+++|.+|++.+...
T Consensus 130 ~~--------~~~~~a~~~~~~~~e~SAk~g------------~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 130 TE--------QAQAYAERNGMTFFEVSPLCN------------FNITESFTELARIVLMR 169 (189)
T ss_pred HH--------HHHHHHHHcCCEEEEecCCCC------------CCHHHHHHHHHHHHHHh
Confidence 22 288999999999999999999 99999999999877644
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1e-32 Score=242.32 Aligned_cols=163 Identities=21% Similarity=0.355 Sum_probs=141.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+.|+++|++|||||||+++|..+.|...+.+|.+..+....+..++..+.+.+|||+|+++|+.++..|+++++++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36999999999999999999999998889999998887777777777899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+++++||+.+..|+..+..... .|+++||||+|+.. .+++ ..
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~--------~~~v--------------------------~~- 125 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET--------DREI--------------------------SR- 125 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc--------cccc--------------------------CH-
Confidence 99999999999999998876543 39999999999953 2222 11
Q ss_pred CCcHHHHHHHHHHHHHc-CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 208 EPSWEIRRSCLEWCTEH-RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
..+.++++.+ ++.|+||||++| .||+++|.+|++.+...+
T Consensus 126 -------~~~~~~a~~~~~~~~~etSAktg------------~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 126 -------QQGEKFAQQITGMRFCEASAKDN------------FNVDEIFLKLVDDILKKM 166 (202)
T ss_pred -------HHHHHHHHhcCCCEEEEecCCCC------------CCHHHHHHHHHHHHHHhC
Confidence 2267888775 789999999999 999999999998886544
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-33 Score=239.50 Aligned_cols=173 Identities=19% Similarity=0.319 Sum_probs=158.8
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
....++.+||+++|+|+||||-|+.||..++|..+..+|+|+++.+..+..+++.++.+||||+|||+|+++...|+++|
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
.|+++|||++...+|+.+..|+.+++.+..+ +++|||||+||. ..|.+
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~--------~lraV---------------------- 137 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN--------HLRAV---------------------- 137 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh--------hcccc----------------------
Confidence 9999999999999999999999999988755 899999999994 46666
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~ 269 (289)
+.++ +..++...+..++|+||.+. .||+..|..++..|+.....+
T Consensus 138 ----~te~--------~k~~Ae~~~l~f~EtSAl~~------------tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 138 ----PTED--------GKAFAEKEGLFFLETSALDA------------TNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred ----chhh--------hHhHHHhcCceEEEeccccc------------ccHHHHHHHHHHHHHHHHHHH
Confidence 5555 89999999999999999999 999999999998886554433
No 11
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-33 Score=230.42 Aligned_cols=174 Identities=18% Similarity=0.290 Sum_probs=160.3
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
+.++.+.+|++++|+.|.|||+|+++|+.++|.++...|+|++|.+..++..++.++++||||+|||+|+++...|+++|
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
.++++|||++++++|+.+.+|+.+++...++ .||++|||.||. ..|++
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~--------~~R~V---------------------- 132 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD--------PEREV---------------------- 132 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC--------hhhhh----------------------
Confidence 9999999999999999999999999998776 678899999994 46767
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
+..+ +..||.++.+-+.|+||++| +||++.|-...+.++...+..+
T Consensus 133 ----tflE--------As~FaqEnel~flETSa~TG------------eNVEEaFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 133 ----TFLE--------ASRFAQENELMFLETSALTG------------ENVEEAFLKCARTILNKIESGE 178 (214)
T ss_pred ----hHHH--------HHhhhcccceeeeeeccccc------------ccHHHHHHHHHHHHHHHHhhcC
Confidence 4444 89999999999999999999 9999999999999988887766
No 12
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=5.1e-33 Score=227.98 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=151.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+|.+|+|++|||||||+.+|..+.|...|..|+|.++...++..++..++++||||+|+|+|+.+...|+++.+++|
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 34578999999999999999999999999999999999999889888999999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
+|||+++.+||..++.|+.+++...+. |-++||||.|+. .+|.+ .
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~--------~RrvV--------------------------~ 131 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP--------ERRVV--------------------------D 131 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc--------cceee--------------------------e
Confidence 999999999999999999999987665 888899999994 34444 3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
.++ |+.|+...|+++||+|||.+ +|++.+|..|.+..+...
T Consensus 132 t~d--------Ar~~A~~mgie~FETSaKe~------------~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 132 TED--------ARAFALQMGIELFETSAKEN------------ENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hHH--------HHHHHHhcCchheehhhhhc------------ccchHHHHHHHHHHHHHH
Confidence 344 99999999999999999999 999999999999887665
No 13
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.98 E-value=3.2e-31 Score=223.33 Aligned_cols=162 Identities=19% Similarity=0.302 Sum_probs=140.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.++.|...+.+|.+.++....+..++..+.+.+|||+|+++|..++..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888888988888766666677788999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
||++++++|+.+..|+..+..... .|+++||||+|+... +.+ +
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~--------~~~--------------------------~- 126 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ--------RDV--------------------------T- 126 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--------cCc--------------------------C-
Confidence 999999999999999998866543 389999999999532 111 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.+.+.+++..++++|+||||++| .|+.++|..|++.++.
T Consensus 127 -------~~~~~~~~~~~~~~~~e~Sa~~~------------~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 127 -------YEEAKQFADENGLLFLECSAKTG------------ENVEDAFLETAKKIYQ 165 (166)
T ss_pred -------HHHHHHHHHHcCCEEEEEECCCC------------CCHHHHHHHHHHHHhh
Confidence 12277888889999999999999 9999999999987754
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.98 E-value=2.3e-31 Score=228.85 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=138.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+.+|..+.|...+.+|++..+. ..+..++..+++.||||+|+++|+.+...++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 69999999999999999999999998889999987664 34455677899999999999999999999999999999999
Q ss_pred eCCCHhhHHHH-HHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDAL-KHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l-~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+++++||+.+ ..|+..++.... .|++|||||+||.+.... .. .+.+.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~------~~------------------~~~~~------ 130 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQY------LA------------------DHPGA------ 130 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhh------hh------------------hccCC------
Confidence 99999999998 689999976543 389999999999542110 00 00000
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.....+++..|+..+++ .|+||||++| .||+++|..+++.+
T Consensus 131 --~~v~~~~~~~~a~~~~~~~~~E~SAk~~------------~nV~~~F~~~~~~~ 172 (176)
T cd04133 131 --SPITTAQGEELRKQIGAAAYIECSSKTQ------------QNVKAVFDAAIKVV 172 (176)
T ss_pred --CCCCHHHHHHHHHHcCCCEEEECCCCcc------------cCHHHHHHHHHHHH
Confidence 01113348899999998 6999999999 99999999999865
No 15
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1.5e-32 Score=227.48 Aligned_cols=183 Identities=21% Similarity=0.329 Sum_probs=163.5
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....|||+++|..=||||||+-||.-++|...+.+|+...|.+..++..+....+.||||+|||+|..+.+.||++.+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 44569999999999999999999999999999999999888888888888899999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
++|||++|++||+.+++|+..++....+ -+++||||+|| +.+|++
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL--------EeeR~V------------------------- 136 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL--------EEERQV------------------------- 136 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH--------HHhhhh-------------------------
Confidence 9999999999999999999999887655 67789999999 677888
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCCCCCCCCCCcc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVK 282 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 282 (289)
+..+ +..++...|..|+|+||+.+ .||.++|..|.+.|+++.......+.+.++.|..
T Consensus 137 -t~qe--------Ae~YAesvGA~y~eTSAk~N------------~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~ 194 (218)
T KOG0088|consen 137 -TRQE--------AEAYAESVGALYMETSAKDN------------VGISELFESLTAKMIEHSSQRQRTRSPLSTQPPS 194 (218)
T ss_pred -hHHH--------HHHHHHhhchhheecccccc------------cCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCC
Confidence 5544 89999999999999999999 9999999999999999887666555444444443
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.98 E-value=2.8e-31 Score=229.36 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=139.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||+++|..+.|...+.+|.+..+. ..+..++..+.+.||||+|++.|..+...+++++|++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 4589999999999999999999999998889999987663 455566778999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHH-HHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDAL-KHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l-~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++.||+.+ ..|+..++...+. |++|||||+||..... ....+. .+.
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~----~~~~~~------------------~~~----- 135 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLT----TLVELS------------------NHR----- 135 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChh----hHHHHH------------------hcC-----
Confidence 9999999999997 7999999776543 9999999999953211 001110 000
Q ss_pred CCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchh-HHHHHHHHHHhcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQG-VERLYGALSAHMW 263 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~-i~~l~~~L~~~~~ 263 (289)
......+++.++++.+++ +|+||||+++ .| |+++|..+++.++
T Consensus 136 ---~~~v~~~~~~~~a~~~~~~~~~E~SAk~~------------~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 136 ---QTPVSYDQGANMAKQIGAATYIECSALQS------------ENSVRDIFHVATLACV 180 (182)
T ss_pred ---CCCCCHHHHHHHHHHcCCCEEEECCcCCC------------CCCHHHHHHHHHHHHh
Confidence 000112348999999996 8999999999 98 9999999988543
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=5.5e-31 Score=228.45 Aligned_cols=174 Identities=16% Similarity=0.211 Sum_probs=138.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|..+.|...+.+|.+..+. ..+..++..+.+.+|||+|+++|+.++..|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999998889999987654 3344466789999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 129 FNLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 129 ~Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
||++++.||+.+. .|+..+..... .|+++||||+||...... ...+. .
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~----~~~~~-------------------------~- 131 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADT----LKKLK-------------------------E- 131 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhh----HHHHh-------------------------h-
Confidence 9999999999997 69988865433 499999999999542110 00110 0
Q ss_pred CCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 207 EEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
........+++..|+..++ ++|+||||++| .||+++|..|++.+...
T Consensus 132 ~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g------------~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 132 QGQAPITPQQGGALAKQIHAVKYLECSALNQ------------DGVKEVFAEAVRAVLNP 179 (191)
T ss_pred ccCCCCCHHHHHHHHHHcCCcEEEEeCCCCC------------CCHHHHHHHHHHHHhcc
Confidence 0000011234889999998 58999999999 99999999999887654
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=5.1e-31 Score=226.69 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=138.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
++||+++|++|||||||+++|..+.|...+.+|.+..+. ..+..++..+.+.+|||+|++.|..+...++++++++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888899887663 4555567789999999999999999999999999999999
Q ss_pred EeCCCHhhHHHH-HHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 129 FNLNDLSTLDAL-KHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 129 ~Dv~~~~S~~~l-~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
||+++++||+.+ ..|+..++...+. |+++||||+||..... ....+ ..
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~----~~~~~--------------------------~~ 129 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLS----TLMEL--------------------------SH 129 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChh----HHHHH--------------------------Hh
Confidence 999999999996 7999999876544 8999999999954211 00111 00
Q ss_pred CCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchh-HHHHHHHHHHhcc
Q 040295 207 EEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQG-VERLYGALSAHMW 263 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~-i~~l~~~L~~~~~ 263 (289)
........+++.++++.+++ +|+||||++| ++ |+++|..+++..+
T Consensus 130 ~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~------------~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 130 QRQAPVSYEQGCAIAKQLGAEIYLECSAFTS------------EKSVRDIFHVATMACL 176 (178)
T ss_pred cCCCCCCHHHHHHHHHHhCCCEEEECccCcC------------CcCHHHHHHHHHHHHh
Confidence 00000112348999999997 7999999999 95 9999999998544
No 19
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=9.1e-31 Score=222.84 Aligned_cols=164 Identities=17% Similarity=0.254 Sum_probs=139.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC----------cceEEEEEEEcCCchhhhccccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK----------YYTADVSLWMAHLHEEFSIRSLP 117 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~----------~~~~~l~I~Dt~G~e~~~~~~~~ 117 (289)
+.+||+++|++|||||||+++|.++.|...+.+|.+.++....+... +..+.+.+|||+|++.|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988889999887765544322 45688999999999999999999
Q ss_pred cccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
+++++|++|+|||+++++||..+..|+..+.... .+|+++||||+|+... +.+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------~~v---------------- 138 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ--------RQV---------------- 138 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc--------Ccc----------------
Confidence 9999999999999999999999999999987653 4489999999999532 111
Q ss_pred CCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+. ..+.+++...+++|+++||++| .|++++|+.|++.++.+
T Consensus 139 ----------~~--------~~~~~~~~~~~~~~~e~Sak~~------------~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 139 ----------SE--------EQAKALADKYGIPYFETSAATG------------TNVEKAVERLLDLVMKR 179 (180)
T ss_pred ----------CH--------HHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHhh
Confidence 11 1278899999999999999999 99999999999877654
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-31 Score=219.99 Aligned_cols=169 Identities=18% Similarity=0.322 Sum_probs=150.3
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
......+|++|+|++.||||||+.|+.+..|...+-+|.|.++...++-...+.++++||||+|+|+|+.+...|+++++
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 34555679999999999999999999999999999999999998888877778899999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 124 ALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 124 ~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
|+|++||+++.+||..++.|.-.|+... +-+||+||||||+ +.+|.+
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm--------d~eRvi----------------------- 144 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM--------DSERVI----------------------- 144 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC--------ccceee-----------------------
Confidence 9999999999999999999999998763 3399999999999 445655
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
+.+. +..++...|++|||+|||.+ .||+++|.+|...+-..|
T Consensus 145 ---s~e~--------g~~l~~~LGfefFEtSaK~N------------inVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 145 ---SHER--------GRQLADQLGFEFFETSAKEN------------INVKQVFERLVDIICDKM 186 (193)
T ss_pred ---eHHH--------HHHHHHHhChHHhhhccccc------------ccHHHHHHHHHHHHHHHh
Confidence 3333 88999999999999999999 999999999988765544
No 21
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=2.9e-30 Score=217.23 Aligned_cols=158 Identities=20% Similarity=0.325 Sum_probs=137.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.++.|...+.+|.+.++....+...+..+.+.+|||+|+++|..+...+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899998877666666777789999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+++++||+.+..|+..+..... .|+++||||.|+... +.+ ..
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~--------~~v--------------------------~~- 125 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK--------RQV--------------------------GD- 125 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--------cCC--------------------------CH-
Confidence 99999999999999999876543 389999999999532 222 11
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
..+..+++..+++|+||||++| .||+++|.+|++.
T Consensus 126 -------~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~f~~l~~~ 160 (161)
T cd04117 126 -------EQGNKLAKEYGMDFFETSACTN------------SNIKESFTRLTEL 160 (161)
T ss_pred -------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHhh
Confidence 2277888888999999999999 9999999999875
No 22
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=2.6e-30 Score=218.21 Aligned_cols=163 Identities=19% Similarity=0.283 Sum_probs=140.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||+++|.+..|...+.+|.+.++....+...+..+.+.+|||+|++.+..+...+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999999998899999988766666667777899999999999999988899999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++++|+.+..|+..+.... ..|+++||||+|+..... + .
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--------~--------------------------~ 127 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV--------V--------------------------S 127 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccC--------C--------------------------C
Confidence 999999999999999999997764 338999999999964211 1 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
. +.+..++..++++|+++||+++ .|++++|.+|+++++.
T Consensus 128 ~--------~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 128 K--------EEGEALADEYGIKFLETSAKAN------------INVEEAFFTLAKDIKK 166 (167)
T ss_pred H--------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHh
Confidence 1 1256777888899999999999 9999999999988753
No 23
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=2.6e-30 Score=222.95 Aligned_cols=165 Identities=18% Similarity=0.289 Sum_probs=139.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|..+.|...+.+|.+.++....+..++..+.+.+|||+|++.|..++..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998887667777777899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++.+|+.+..|+..+..... .| |+||||+|+..... ...+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~---~~~~------------------------------- 125 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLP---PEEQ------------------------------- 125 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccccc---chhh-------------------------------
Confidence 99999999999999999876533 36 57899999953210 0000
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
....+.+.+++...+++|++|||++| .|++++|.+|.+.++.
T Consensus 126 ---~~~~~~~~~~a~~~~~~~~e~SAk~g------------~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 126 ---EEITKQARKYAKAMKAPLIFCSTSHS------------INVQKIFKIVLAKAFD 167 (182)
T ss_pred ---hhhHHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHh
Confidence 11123478899999999999999999 9999999999988864
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.3e-30 Score=225.76 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=140.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC-cceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK-YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
+||+|+|++|||||||+++|+++.+...+.+|.+.++....+... +..+.+.+|||+|+++|..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988889999988766666555 6788999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhc------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQ------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
||++++++|+.+..|+..+... ...|+|+||||+|+... +.+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--------~~~------------------------ 128 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--------LAK------------------------ 128 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--------ccc------------------------
Confidence 9999999999999999888643 22399999999999531 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
.. ..+.+++..++ ++|++|||++| .||+++|++|++.+.....
T Consensus 129 --~~--------~~~~~~~~~~~~~~~~e~Sak~~------------~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 129 --DG--------EQMDQFCKENGFIGWFETSAKEG------------INIEEAMRFLVKNILANDK 172 (201)
T ss_pred --CH--------HHHHHHHHHcCCceEEEEeCCCC------------CCHHHHHHHHHHHHHHhch
Confidence 11 22788999999 58999999999 9999999999999877654
No 25
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=8.4e-31 Score=218.89 Aligned_cols=159 Identities=22% Similarity=0.394 Sum_probs=143.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+++|+++||||||+++|.++.|...+.+|.+.+.....+..++..+.+.+||++|++.|..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999888888888888899999999999999999888889999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (289)
+++++||+.+..|+..+..... .|++|||||.|+.. .+.+ +.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~--------~~~v--------------------------~~-- 124 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD--------EREV--------------------------SV-- 124 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG--------GSSS--------------------------CH--
T ss_pred ccccccccccccccccccccccccccceeeeccccccc--------cccc--------------------------hh--
Confidence 9999999999999999987765 49999999999953 2222 11
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 209 PSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+.++.++..++++|+||||+++ .||.++|..+++.++
T Consensus 125 ------~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 125 ------EEAQEFAKELGVPYFEVSAKNG------------ENVKEIFQELIRKIL 161 (162)
T ss_dssp ------HHHHHHHHHTTSEEEEEBTTTT------------TTHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHhCCEEEEEECCCC------------CCHHHHHHHHHHHHh
Confidence 2388999999999999999999 999999999998764
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=9.7e-31 Score=223.13 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=137.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+|+|++|||||||+++|..+.|...+.+|.+..+. ..+..++..+.+.+|||+|++.|+.++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 379999999999999999999999998888888886553 3345566778899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++.||+.+..|+..+... ...|+++||||+|+... +++ +
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~--------~~v--------------------------~ 126 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ--------RQV--------------------------T 126 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc--------Ccc--------------------------C
Confidence 9999999999999998877654 23499999999999532 222 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+ .+..+++.++++|+||||++| .||+++|++|++.+...
T Consensus 127 ~~--------~~~~~a~~~~~~~~e~Sa~~~------------~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 127 TE--------EGRNLAREFNCPFFETSAALR------------HYIDDAFHGLVREIRRK 166 (172)
T ss_pred HH--------HHHHHHHHhCCEEEEEecCCC------------CCHHHHHHHHHHHHHHh
Confidence 11 267888889999999999999 99999999999887754
No 27
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5e-30 Score=229.77 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=139.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||+++|..+.|...+.+|++..+. ..+..++..+.+.||||+|++.|..+...|+++++++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 3589999999999999999999999999899999987764 345667778999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHH-HHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDAL-KHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l-~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||+++++||+.+ ..|+..+....+ .|+||||||+||...... ...+ ....
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~----~~~l------------------~~~~----- 143 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLST----LMEL------------------SNQK----- 143 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccch----hhhh------------------cccc-----
Confidence 9999999999985 799999986543 389999999999532110 0000 0000
Q ss_pred CCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCch-hHHHHHHHHHHhccc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQ-GVERLYGALSAHMWP 264 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~-~i~~l~~~L~~~~~~ 264 (289)
......+++++||+.+++ .|+||||++| + ||+++|..+++.++.
T Consensus 144 ---~~~Vs~~e~~~~a~~~~~~~~~EtSAktg------------~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 144 ---QAPISYEQGCALAKQLGAEVYLECSAFTS------------EKSIHSIFRSASLLCLN 189 (232)
T ss_pred ---CCcCCHHHHHHHHHHcCCCEEEEccCCcC------------CcCHHHHHHHHHHHHHH
Confidence 001112348999999999 6999999999 8 799999999987654
No 28
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-31 Score=216.99 Aligned_cols=171 Identities=19% Similarity=0.312 Sum_probs=151.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+++|..|||||+|++||..+-|++....|+|++|...++..++..++++||||+|||+|+++..+|++.||++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 44589999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++...||+.+.+|+.+|..+.+. .-|+||||+|+. ++|++|
T Consensus 85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~--------drrevp------------------------- 131 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA--------DRREVP------------------------- 131 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh--------hhhhhh-------------------------
Confidence 999999999999999999999888655 667899999994 455552
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccC
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSG 271 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~ 271 (289)
.+.+++|...+..-|.|+||+.. .||+++|..+..++...+.+...
T Consensus 132 ---------~qigeefs~~qdmyfletsakea------------~nve~lf~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 132 ---------QQIGEEFSEAQDMYFLETSAKEA------------DNVEKLFLDLACRLISEARQNDL 177 (213)
T ss_pred ---------HHHHHHHHHhhhhhhhhhcccch------------hhHHHHHHHHHHHHHHHHHhccc
Confidence 12277888877777899999998 99999999999998877766554
No 29
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=3.3e-30 Score=228.66 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=142.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+++|++|||||||+++|+.+.|...+.+|.+.++....+..++..+.+.+|||+|+++|..++..|+++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56699999999999999999999999998889999998887777766666789999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
+|||++++.+|+.+..|+..+..... .|+++||||+|+.. +.+ .
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~---------~~v--------------------------~ 135 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN---------RQV--------------------------K 135 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh---------ccC--------------------------C
Confidence 99999999999999999999976543 39999999999942 111 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
. ..+ .++...+++|+||||++| .||.++|.+|++.+.....
T Consensus 136 ~--------~~~-~~~~~~~~~~~e~SAk~~------------~~i~~~f~~l~~~~~~~~~ 176 (219)
T PLN03071 136 A--------KQV-TFHRKKNLQYYEISAKSN------------YNFEKPFLYLARKLAGDPN 176 (219)
T ss_pred H--------HHH-HHHHhcCCEEEEcCCCCC------------CCHHHHHHHHHHHHHcCcc
Confidence 0 013 677778899999999999 9999999999999977654
No 30
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=9.5e-30 Score=213.84 Aligned_cols=161 Identities=22% Similarity=0.342 Sum_probs=139.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+|+|++|||||||+++|.++.+...+.+|.+.++....+...+..+.+.+|||||+++|..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999999888888888887767776677788999999999999999888999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
||++++++|+.+..|+..+.... ..|+++||||+|+..... + +
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--------~--------------------------~- 126 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRV--------V--------------------------D- 126 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccC--------C--------------------------C-
Confidence 99999999999999999987764 248999999999853211 1 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+.+..++..++++|+++||++| .|++++|..|++.+.
T Consensus 127 -------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~i~~~~~ 164 (166)
T cd01869 127 -------YSEAQEFADELGIPFLETSAKNA------------TNVEQAFMTMAREIK 164 (166)
T ss_pred -------HHHHHHHHHHcCCeEEEEECCCC------------cCHHHHHHHHHHHHH
Confidence 11267888888999999999999 999999999998764
No 31
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1.1e-29 Score=214.04 Aligned_cols=159 Identities=18% Similarity=0.316 Sum_probs=136.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.++.|...+.+|.+.++....+..++..+.+.+|||+|++++..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 69999999999999999999999998888888887776666655666789999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+..|+..+..... .|+++||||+|+.+... + .
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--------~--------------------------~-- 125 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV--------V--------------------------S-- 125 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccc--------c--------------------------C--
Confidence 99999999999999999976643 48999999999964321 1 0
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+.+..++...+++|+++||+++ .|+.++|++|.+.+
T Consensus 126 ------~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~~ 162 (165)
T cd01865 126 ------SERGRQLADQLGFEFFEASAKEN------------INVKQVFERLVDII 162 (165)
T ss_pred ------HHHHHHHHHHcCCEEEEEECCCC------------CCHHHHHHHHHHHH
Confidence 11256777788899999999999 99999999998764
No 32
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=6.4e-30 Score=218.83 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=135.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|..+.|...+.+|.+..+. ..+..++..+.+.||||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888899887664 34445666789999999999999998988999999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+. .|+..+..... .|+|+||||+|+..... ....+ ...
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~----~~~~l--------------------------~~~ 130 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS----TIEKL--------------------------AKN 130 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh----hHHHh--------------------------hhc
Confidence 999999999997 59988876543 39999999999954211 01111 000
Q ss_pred CCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.......+.+..+++..+ +.|+||||++| .|++++|+.++...
T Consensus 131 ~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg------------~~v~~~f~~~~~~~ 174 (175)
T cd01874 131 KQKPITPETGEKLARDLKAVKYVECSALTQ------------KGLKNVFDEAILAA 174 (175)
T ss_pred cCCCcCHHHHHHHHHHhCCcEEEEecCCCC------------CCHHHHHHHHHHHh
Confidence 001112234888998887 68999999999 99999999998754
No 33
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.3e-29 Score=220.97 Aligned_cols=169 Identities=17% Similarity=0.254 Sum_probs=144.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+|+|++|||||||+++|.+..|...+.+|.+.++....+...+..+.+.+|||||++.|..++..++++++++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999999988888999888776777667777889999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|||++++++|+.+..|+..+...... |++|||||+|+.+.... .
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~----------------------------------~- 129 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV----------------------------------E- 129 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccccc----------------------------------C-
Confidence 99999999999999999998775443 89999999999642211 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
...+..++...+++|+++||++| .||+++|++|.+.++.......
T Consensus 130 -------~~~~~~~~~~~~~~~~e~Sa~~~------------~gi~~lf~~l~~~~~~~~~~~~ 174 (199)
T cd04110 130 -------TEDAYKFAGQMGISLFETSAKEN------------INVEEMFNCITELVLRAKKDNL 174 (199)
T ss_pred -------HHHHHHHHHHcCCEEEEEECCCC------------cCHHHHHHHHHHHHHHhhhccC
Confidence 11266778888899999999999 9999999999998876554433
No 34
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=8.1e-30 Score=215.93 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=138.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888899998887777777777899999999999999998889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (289)
|++++++|+.+..|+..+.... ..|+++||||+|+... .+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~---------~~------------------------------ 121 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR---------KV------------------------------ 121 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc---------cC------------------------------
Confidence 9999999999999999997765 3499999999999521 01
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 209 PSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
......++...+++|+|+||++| .|++++|.+|++.++.
T Consensus 122 -----~~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 122 -----KAKQITFHRKKNLQYYEISAKSN------------YNFEKPFLWLARKLLG 160 (166)
T ss_pred -----CHHHHHHHHHcCCEEEEEeCCCC------------CChHHHHHHHHHHHHh
Confidence 01144677778889999999999 9999999999988764
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=1.6e-29 Score=210.96 Aligned_cols=160 Identities=17% Similarity=0.310 Sum_probs=138.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+...+..+.+.+|||+|++.|..++..+++.++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998889999998887667776777899999999999999988889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC-------CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK-------FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~-------~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|++++.+|+.+..|+..+.... ..|+++||||+|+.+.. .+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~------------------------ 128 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR--------AV------------------------ 128 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc--------cc------------------------
Confidence 9999999999999999886653 24999999999995311 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+. ..+..++...+++|+++||+++ .|+.++|++|.+.++
T Consensus 129 --~~--------~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~l~ 167 (168)
T cd04119 129 --SE--------DEGRLWAESKGFKYFETSACTG------------EGVNEMFQTLFSSIV 167 (168)
T ss_pred --CH--------HHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHHh
Confidence 11 1256788888899999999999 999999999998764
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=1.1e-29 Score=211.83 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=131.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||++++..+.|...+.+|.+..+ ...+..++..+.+.+|||+|+++|..++..++++++++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998877878876433 344555666788999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++.+|+.+..|+..+.... ..|+++||||+|+..... + .
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~--------------------------~- 125 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERV--------V--------------------------S- 125 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce--------e--------------------------c-
Confidence 9999999999999998886543 349999999999954211 1 0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+..++..++++|+++||+++ .|+.++|++|++.+
T Consensus 126 -------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~~ 162 (163)
T cd04136 126 -------REEGQALARQWGCPFYETSAKSK------------INVDEVFADLVRQI 162 (163)
T ss_pred -------HHHHHHHHHHcCCeEEEecCCCC------------CCHHHHHHHHHHhc
Confidence 11256677778899999999999 99999999998865
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=1.8e-29 Score=214.99 Aligned_cols=161 Identities=17% Similarity=0.304 Sum_probs=137.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+++|++|||||||+++|+++.|...+.+|.+..+....+...+..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999998899999988866666666777899999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhcC-C--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQK-F--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~~-~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++++|+.+..|+..+.... + .|+++||||+|+.+... +
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~----------------------------- 124 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------Y----------------------------- 124 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------c-----------------------------
Confidence 999999999999999885543 2 37899999999954211 0
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
......+..++...+++|++|||++| .|++++|..|++.+.
T Consensus 125 ---~~~~~~~~~~~~~~~~~~~e~Sa~~g------------~~v~~lf~~l~~~~~ 165 (170)
T cd04108 125 ---ALMEQDAIKLAAEMQAEYWSVSALSG------------ENVREFFFRVAALTF 165 (170)
T ss_pred ---cccHHHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHHH
Confidence 00112267788888899999999999 999999999998763
No 38
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=2e-29 Score=215.58 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=134.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+.+|..+.|...+.+|.+..+ ...+..++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999999888888886544 334445667789999999999999999999999999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+++++||+.+. .|+..+..... .|+++||||+|+..... ....+. ..
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----~~~~~~--------------------------~~ 130 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD----TIEKLK--------------------------EK 130 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh----hHHHHh--------------------------hc
Confidence 999999999996 69888766543 39999999999954211 001110 00
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.......+++.++++.++. +|+||||++| +|++++|+.|++.
T Consensus 131 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~------------~~i~~~f~~l~~~ 173 (174)
T cd01871 131 KLTPITYPQGLAMAKEIGAVKYLECSALTQ------------KGLKTVFDEAIRA 173 (174)
T ss_pred cCCCCCHHHHHHHHHHcCCcEEEEeccccc------------CCHHHHHHHHHHh
Confidence 0001123348899999985 8999999999 9999999999864
No 39
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=8.4e-30 Score=225.80 Aligned_cols=236 Identities=56% Similarity=0.976 Sum_probs=206.8
Q ss_pred CceEEEEcCCCC--CHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 49 RPGILIIGSSNV--GKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 49 ~iKI~ilG~~gv--GKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
+.-++++|.+|| ||-+|+.|+...+|.....+.....+++|+|++++|...+.+.-.+--..+.-..........++|
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 467899999999 999999999999999888888899999999999999888777654433322222223344567999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCC--cccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADP--DFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 204 (289)
+|||.+....+..++.|++.........+++||||.|..+.+..+.+++|++.|-.-++-+- ++|++||+.+||++++
T Consensus 84 mvfdlse~s~l~alqdwl~htdinsfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssll 163 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINSFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLL 163 (418)
T ss_pred EEEeccchhhhHHHHhhccccccccchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccccc
Confidence 99999999999999999998777777789999999999999999999999997655444332 6699999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCCCCCCCCCCcccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPSLPVKEV 284 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
..++..-.+|..+.+||.+++++++|.||.+.+|++|.++|+|+.||+++|.+|.++||++|.+|.++++.+|-+|+.|+
T Consensus 164 gsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk~gdrinepvlpqgee 243 (418)
T KOG4273|consen 164 GSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILKNGDRINEPVLPQGEE 243 (418)
T ss_pred ccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceeccccccCCccCCCcce
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999876
No 40
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=3.8e-29 Score=209.74 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=138.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+||++|++++..+...+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 34799999999999999999999999988888999888877777777777899999999999999999899999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++.+|+.+..|+..+..... .|+++||||+|+... +.+ .
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~--------~~~--------------------------~ 127 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL--------RAV--------------------------P 127 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--------ccC--------------------------C
Confidence 9999999999999999999876543 499999999999532 111 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+....++...+++|+|+||++| .|++++|+.|+..+
T Consensus 128 --------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~i 164 (165)
T cd01868 128 --------TEEAKAFAEKNGLSFIETSALDG------------TNVEEAFKQLLTEI 164 (165)
T ss_pred --------HHHHHHHHHHcCCEEEEEECCCC------------CCHHHHHHHHHHHh
Confidence 11256777778899999999999 99999999998865
No 41
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=2.9e-29 Score=223.49 Aligned_cols=174 Identities=11% Similarity=0.144 Sum_probs=139.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|..+.|...+.+|.+..+. ..+..++..+.+.||||+|++.|..++..+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889999987663 45556777899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+. .|...++..... |+||||||+||..... ..+.+. ..
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~----~~~~~~--------------------------~~ 130 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLA----TLRELS--------------------------KQ 130 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchh----hhhhhh--------------------------hc
Confidence 999999999995 788777665443 9999999999965321 111110 00
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchh-HHHHHHHHHHhcccCc
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQG-VERLYGALSAHMWPGM 266 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~-i~~l~~~L~~~~~~~~ 266 (289)
.......+++..+++..++ .|+||||+++ .+ |.++|..++...+...
T Consensus 131 ~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~------------~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 131 RLIPVTHEQGTVLAKQVGAVSYVECSSRSS------------ERSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCCccCHHHHHHHHHHcCCCEEEEcCCCcC------------CcCHHHHHHHHHHHHHhcc
Confidence 0001122348999999996 8999999998 85 9999999998776644
No 42
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=6.1e-30 Score=227.55 Aligned_cols=182 Identities=17% Similarity=0.248 Sum_probs=135.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|.+|||||||+++|+.++|.. +.+|.+..+....+ ..+.+.||||+|++.|..+...++++++++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 56777766544332 3567999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+++++||+.+..|+..+..... .|+||||||+|+........+. - + . .. ....+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~---~--------~--------~---~~-~~~~~ 132 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQE---K--------D--------A---GD-RVSPE 132 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccc---c--------c--------c---cc-ccccc
Confidence 99999999999988877765432 3899999999996421000000 0 0 0 00 00000
Q ss_pred CCcHHHHHHHHHHHHHcC--------------CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccC
Q 040295 208 EPSWEIRRSCLEWCTEHR--------------IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSG 271 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~--------------~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~ 271 (289)
.......+++..|+++.+ ++|+||||++| .||+++|..+++.+++-+..+..
T Consensus 133 ~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg------------~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 133 DQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG------------YNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred ccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCC------------CCHHHHHHHHHHHHHHHHHhhhh
Confidence 011122334888998876 68999999999 99999999999988765544443
No 43
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.2e-29 Score=215.10 Aligned_cols=164 Identities=20% Similarity=0.329 Sum_probs=139.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.++.|...+.+|.+.++....+..++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888887776555665666788999999999999988999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+..|+..+..... .|+++||||+|+..... + +.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~--------v--------------------------~~- 125 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKV--------V--------------------------DS- 125 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccccc--------C--------------------------CH-
Confidence 99999999999999999877543 48999999999964221 1 11
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
..+..++...+++|+++||+++ .|++++|.+|++.+..+.+
T Consensus 126 -------~~~~~~~~~~~~~~~evSa~~~------------~~i~~~f~~l~~~~~~~~~ 166 (188)
T cd04125 126 -------NIAKSFCDSLNIPFFETSAKQS------------INVEEAFILLVKLIIKRLE 166 (188)
T ss_pred -------HHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHHhh
Confidence 1156778888999999999999 9999999999999876543
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=4.1e-29 Score=211.26 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=140.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
+..+||+|+|++|||||||++++.+..+...+.++.+.++....+..++....+.+|||+|+++|..+...+++.+|++|
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999999988888888888877777777777789999999999999998888999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+..|+..++... ..|+++||||+|+..... +
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------~-------------------------- 127 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRRE--------V-------------------------- 127 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccC--------C--------------------------
Confidence 9999999999999999999997764 348999999999964211 1
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
+. ..+..++..++++|+|+||+++ .|++++|..+++++++
T Consensus 128 ~~--------~~~~~~~~~~~~~~~e~Sa~~~------------~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 128 SY--------EEGEAFAKEHGLIFMETSAKTA------------SNVEEAFINTAKEIYE 167 (168)
T ss_pred CH--------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHh
Confidence 11 1256777788999999999999 9999999999987754
No 45
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=8.8e-31 Score=218.00 Aligned_cols=168 Identities=20% Similarity=0.391 Sum_probs=148.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEee-cCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~-~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
.+.++++++|++-||||||++.|..++|.+-..||.|+++....+. ..++.+++++|||+|||+|+++.++|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 3458999999999999999999999999999999999998766543 467889999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCC-C---eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKF-E---ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~-~---~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
++|||+++++||+.+.+|+.+....-. | .+++||+|+||. ..|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~--------SqRqV----------------------- 134 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ--------SQRQV----------------------- 134 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh--------hhccc-----------------------
Confidence 999999999999999999988765532 3 677899999994 46767
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
+.+| ++.++..+|+.|+|+||++| .||++.|+-|.+.+...+..
T Consensus 135 ---t~EE--------aEklAa~hgM~FVETSak~g------------~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 135 ---TAEE--------AEKLAASHGMAFVETSAKNG------------CNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ---cHHH--------HHHHHHhcCceEEEecccCC------------CcHHHHHHHHHHHHHHHHhc
Confidence 4444 99999999999999999999 99999999999888766654
No 46
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=5e-29 Score=207.91 Aligned_cols=158 Identities=16% Similarity=0.275 Sum_probs=134.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC--cceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK--YYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+... +..+++++|||||++.|..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888898888755544444 667899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|||++++++|+.+..|+..+..... .|+++||||+|+.... .+ +.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------~v--------------------------~~ 126 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA--------VI--------------------------TN 126 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc--------CC--------------------------CH
Confidence 9999999999999999998876433 3899999999996421 11 11
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.++..++...+++|+++||+++ .|++++|++|...
T Consensus 127 --------~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~ 161 (162)
T cd04106 127 --------EEAEALAKRLQLPLFRTSVKDD------------FNVTELFEYLAEK 161 (162)
T ss_pred --------HHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHh
Confidence 1267888889999999999999 9999999999764
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.3e-29 Score=208.50 Aligned_cols=160 Identities=19% Similarity=0.317 Sum_probs=136.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+|+|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.|..+...+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999999888888888877766666667777889999999999999988899999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++.+|+.+..|+..+..... .|+++||||+|+..... + .
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--------~--------------------------~ 127 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE--------V--------------------------L 127 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc--------c--------------------------C
Confidence 9999999999999999999976543 38999999999954211 1 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 206 DEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
...+..+++.+++ .++|+||++| .|++++|..+++.
T Consensus 128 --------~~~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~~~~l~~~ 164 (165)
T cd01864 128 --------FEEACTLAEKNGMLAVLETSAKES------------QNVEEAFLLMATE 164 (165)
T ss_pred --------HHHHHHHHHHcCCcEEEEEECCCC------------CCHHHHHHHHHHh
Confidence 1126788888886 6999999999 9999999999875
No 48
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=5.2e-29 Score=219.84 Aligned_cols=162 Identities=15% Similarity=0.217 Sum_probs=138.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC-cceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK-YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
+||+|+|++|||||||+++|.++.|...+.+|.+.+++...+... +..+.+.||||+|++.|..+...+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999999988899999988766655543 3568999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC-----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK-----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~-----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
||++++++|+.+..|+..+.... .+|+++||||+|+... +.+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--------~~v------------------------- 127 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--------RTV------------------------- 127 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--------ccc-------------------------
Confidence 99999999999999999987653 2379999999999532 111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ ...+..++..++++++++||++| .||+++|++|++.+...
T Consensus 128 -~--------~~~~~~~~~~~~~~~~~iSAktg------------~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 128 -K--------DDKHARFAQANGMESCLVSAKTG------------DRVNLLFQQLAAELLGV 168 (215)
T ss_pred -C--------HHHHHHHHHHcCCEEEEEECCCC------------CCHHHHHHHHHHHHHhc
Confidence 1 11267888889999999999999 99999999999987643
No 49
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=8.2e-29 Score=208.24 Aligned_cols=159 Identities=19% Similarity=0.277 Sum_probs=136.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|..+.|.+.+.++.+..++...+..++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998877777777766666666677889999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (289)
|++++.+|+.+..|+..++.... .|+++||||+|+.+. . .
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~------~-~-------------------------------- 121 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS------V-T-------------------------------- 121 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh------H-H--------------------------------
Confidence 99999999999999999976533 499999999998421 0 0
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 209 PSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..+..++..++++++++||++| .|++++|+.+++.++.+
T Consensus 122 ------~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 122 ------QKKFNFAEKHNLPLYYVSAADG------------TNVVKLFQDAIKLAVSY 160 (161)
T ss_pred ------HHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHhc
Confidence 1145667777899999999999 99999999999877654
No 50
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=4.4e-29 Score=214.15 Aligned_cols=169 Identities=15% Similarity=0.231 Sum_probs=137.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.++.+...+.+|.+..+.......++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877764433222366789999999999999998888999999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+++++||+.+. .|+..+..... .|+|+||||+|+.+... ..+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~v----------------------------- 127 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN----LDRKV----------------------------- 127 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc----ccCCc-----------------------------
Confidence 999999999996 59888765443 39999999999954210 00111
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
....+.+++..+++ +|++|||++| .||.++|..|++.++..+..
T Consensus 128 -----~~~~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 128 -----TPAQAESVAKKQGAFAYLECSAKTM------------ENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred -----CHHHHHHHHHHcCCcEEEEccCCCC------------CCHHHHHHHHHHHHHhhhhh
Confidence 12237889999998 8999999999 99999999999988776543
No 51
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=7.8e-29 Score=219.25 Aligned_cols=167 Identities=19% Similarity=0.310 Sum_probs=143.7
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.+.+.+||+|+|++|||||||+++|.+..+...+.+|.+.++....+..++..+.+.||||+|+++|..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35567999999999999999999999999887888999988877777777778899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++||||+|+... +.+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--------~~~------------------------ 135 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL--------RSV------------------------ 135 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc--------cCC------------------------
Confidence 999999999999999999999987764 3499999999999532 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.. +.+..++..++++|+++||+++ .|++++|+.|+..+...
T Consensus 136 --~~--------~~~~~l~~~~~~~~~e~SA~~g------------~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 136 --AE--------EDGQALAEKEGLSFLETSALEA------------TNVEKAFQTILLEIYHI 176 (216)
T ss_pred --CH--------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHH
Confidence 11 1266777888999999999999 99999999999888653
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.3e-29 Score=220.24 Aligned_cols=165 Identities=18% Similarity=0.353 Sum_probs=140.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeec-CcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT-KYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
.+||+|+|++|||||||+++|+++.+...+.+|.+.++....+.. .+..+.+++|||+|++.|..+...+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999998888889888877666654 4667899999999999999998899999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||+++++||+.+..|+..+.... ..|++|||||+|+.... .+
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~--------~v-------------------------- 127 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR--------QV-------------------------- 127 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc--------cc--------------------------
Confidence 999999999999999999986542 34789999999995421 11
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
.. ..+..+++.++++|+|+||++| .|++++|+.|++.+...+.
T Consensus 128 ~~--------~~~~~~~~~~~~~~~e~Sak~g------------~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 128 TR--------EEAEKLAKDLGMKYIETSARTG------------DNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CH--------HHHHHHHHHhCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHhh
Confidence 11 1267888888999999999999 9999999999998876653
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=7.4e-29 Score=207.16 Aligned_cols=159 Identities=18% Similarity=0.314 Sum_probs=137.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.++++...+.++.+.++....+..++..+.+.+||++|++.|...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888877776766777789999999999999998889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+..|+..++.... .|+++||||+|+.... .+ +.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--------~~--------------------------~~- 125 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR--------EV--------------------------TF- 125 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc--------cC--------------------------CH-
Confidence 99999999999999998876543 3999999999995321 11 11
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+..++..++++|+++||+++ .|+.++|+++++.+
T Consensus 126 -------~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~~~~~~ 161 (161)
T cd04113 126 -------LEASRFAQENGLLFLETSALTG------------ENVEEAFLKCARSI 161 (161)
T ss_pred -------HHHHHHHHHcCCEEEEEECCCC------------CCHHHHHHHHHHhC
Confidence 1267788888999999999999 99999999998753
No 54
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3.5e-29 Score=216.46 Aligned_cols=163 Identities=18% Similarity=0.214 Sum_probs=135.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+|+|++|||||||+++|..+.|...+.+|.+..+.. .+..++..+.+++|||+|+++|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 69999999999999999999999988888888765532 33445667889999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhcC-----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQK-----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~~-----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
++++.||+.+..|+..+.... ..|+|+||||+|+... +.+ +
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--------~~v--------------------------~ 125 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--------REV--------------------------S 125 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--------Ccc--------------------------C
Confidence 999999999999998886542 2389999999999532 111 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
. ..+.+++..++++|+++||++| .|++++|.+|++.+..++..
T Consensus 126 ~--------~~~~~~~~~~~~~~~e~SAk~~------------~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 126 T--------EEGAALARRLGCEFIEASAKTN------------VNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred H--------HHHHHHHHHhCCEEEEecCCCC------------CCHHHHHHHHHHHHHHhhcc
Confidence 1 1256788888999999999999 99999999999988766543
No 55
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=6.2e-29 Score=214.93 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=135.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+|+|++|||||||+++|..+.|...+.+|.+..+.. .+..++..+.+.||||+|++.|..++..++++++++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 89999999999999999999999988888888776642 34445667899999999999999999999999999999999
Q ss_pred CCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCC
Q 040295 131 LNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEE 208 (289)
Q Consensus 131 v~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (289)
++++++|+.+. .|+..+..... .|+++||||+|+...... ...+ ....
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~----~~~~--------------------------~~~~ 130 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNE----RDDL--------------------------QRYG 130 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhh----HHHH--------------------------hhcc
Confidence 99999999997 69998876543 399999999999643110 0000 0000
Q ss_pred CcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 209 PSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 209 ~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
........+..++...+ ++|+||||++| .||+++|.+|++.++..
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~------------~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 131 KHTISYEEGLAVAKRINALRYLECSAKLN------------RGVNEAFTEAARVALNV 176 (189)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEccCCcC------------CCHHHHHHHHHHHHhcc
Confidence 00011233678888877 68999999999 99999999999888643
No 56
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=4.1e-29 Score=215.90 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=138.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|..+.|...+.+|.+..+. ..+..++..+.+.+|||+|++.|..++..+++.++++|
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 34589999999999999999999999998888888876663 34445566788999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++++|+.+..|+..+.... ..|+++||||+|+.... .+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--------~i------------------------- 128 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER--------QV------------------------- 128 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cc-------------------------
Confidence 9999999999999999999886542 33899999999985321 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
.. ..+..++..++++|++|||++| .||+++|.+|++++....
T Consensus 129 -~~--------~~~~~~~~~~~~~~~e~Sak~~------------~gi~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 129 -ST--------GEGQELAKSFGIPFLETSAKQR------------VNVDEAFYELVREIRKYL 170 (189)
T ss_pred -CH--------HHHHHHHHHhCCEEEEeeCCCC------------CCHHHHHHHHHHHHHHHh
Confidence 11 1256778888899999999999 999999999999886553
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=5e-29 Score=209.04 Aligned_cols=158 Identities=17% Similarity=0.215 Sum_probs=132.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||++++..+.+...+.+|.+..+. ..+...+..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 79999999999999999999999888778888876553 34455566788999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++.+|+.+..|+..+.... ..|+++||||+|+..... + ..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~--------------------------~~ 126 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--------V--------------------------GK 126 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE--------E--------------------------cH
Confidence 9999999999999999886542 349999999999953211 1 11
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+..+++..+++|++|||+++ .|++++|.+|++.+
T Consensus 127 --------~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~l~~~l 162 (164)
T cd04175 127 --------EQGQNLARQWGCAFLETSAKAK------------INVNEIFYDLVRQI 162 (164)
T ss_pred --------HHHHHHHHHhCCEEEEeeCCCC------------CCHHHHHHHHHHHh
Confidence 1156788888899999999999 99999999998754
No 58
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-29 Score=207.02 Aligned_cols=183 Identities=22% Similarity=0.317 Sum_probs=162.3
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+|.+|+|+-|||||+|+++|...+|......|++++|....|...+..++++||||+|||+|+.+.++|++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
.++|||++.+.++..+..|+...+...+| .+++||||.|| +..|.+
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadl--------e~qrdv------------------------ 134 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL--------ESQRDV------------------------ 134 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh--------hhcccC------------------------
Confidence 99999999999999999999999888665 78889999999 455656
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc-------CCCCC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS-------GDKIT 275 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~-------~~~~~ 275 (289)
++++ +.+|+.++|.-++|+|||+| .+|++.|-+..+.++.+.+-.. ..-+.
T Consensus 135 --~yee--------ak~faeengl~fle~saktg------------~nvedafle~akkiyqniqdgsldlnaaesgvq~ 192 (215)
T KOG0097|consen 135 --TYEE--------AKEFAEENGLMFLEASAKTG------------QNVEDAFLETAKKIYQNIQDGSLDLNAAESGVQH 192 (215)
T ss_pred --cHHH--------HHHHHhhcCeEEEEeccccc------------CcHHHHHHHHHHHHHHhhhcCcccccchhccCcC
Confidence 5555 99999999999999999999 9999999999888887765443 34455
Q ss_pred CCCCCc
Q 040295 276 EPSLPV 281 (289)
Q Consensus 276 ~~~~~~ 281 (289)
+|+.|.
T Consensus 193 k~~~p~ 198 (215)
T KOG0097|consen 193 KPSQPS 198 (215)
T ss_pred CCCCCC
Confidence 566665
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=8.4e-29 Score=207.24 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=131.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||++++..+.+...+.+|.+. ++...+..++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 79999999999999999999999998887777763 33345555666788999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++++|+.+..|+..+... ...|+++||||+|+..... + ..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~--------~--------------------------~~ 126 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE--------V--------------------------SS 126 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc--------c--------------------------CH
Confidence 999999999999999888665 2349999999999953211 1 00
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+..++...++++++|||+++ .|+.++|.+|++.+
T Consensus 127 --------~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~l 162 (163)
T cd04176 127 --------AEGRALAEEWGCPFMETSAKSK------------TMVNELFAEIVRQM 162 (163)
T ss_pred --------HHHHHHHHHhCCEEEEecCCCC------------CCHHHHHHHHHHhc
Confidence 1156777777899999999999 99999999998754
No 60
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=7.9e-29 Score=209.89 Aligned_cols=160 Identities=20% Similarity=0.347 Sum_probs=136.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh-ccccccccCccEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS-IRSLPISDQLTALVM 127 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~-~~~~~~~~~ad~vIl 127 (289)
.+||+++|++|||||||+++|+.+.+...+.++.+.++....+...+..+.+.+|||+|+++|+ .++..+++++|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999999888888888888877777777778899999999999987 467788999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++++|+.+..|+..+.... ..|+++||||+|+... +++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------~~~-------------------------- 127 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ--------IQV-------------------------- 127 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh--------cCC--------------------------
Confidence 999999999999999999887653 2499999999999532 222
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCC---CcccccccCCCCchhHHHHHHHHHHhc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASN---VDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~---~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
+.+ .+..++..++++|+||||++ + .++.++|..|++++
T Consensus 128 ~~~--------~~~~~~~~~~~~~~e~Sa~~~~~~------------~~i~~~f~~l~~~~ 168 (170)
T cd04115 128 PTD--------LAQRFADAHSMPLFETSAKDPSEN------------DHVEAIFMTLAHKL 168 (170)
T ss_pred CHH--------HHHHHHHHcCCcEEEEeccCCcCC------------CCHHHHHHHHHHHh
Confidence 111 26778888889999999999 7 99999999998765
No 61
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=2e-28 Score=215.65 Aligned_cols=167 Identities=20% Similarity=0.329 Sum_probs=143.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|....|...+.+|.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34568999999999999999999999999888888998888766666677778899999999999998888999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... +.+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--------~~~------------------------- 129 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR--------RAV------------------------- 129 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc--------cCC-------------------------
Confidence 99999999999999999998886553 3489999999999532 111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
+. ..+.++++.++++|+++||+++ .||+++|.++++.++.+.
T Consensus 130 -~~--------~~~~~~~~~~~~~~~e~Sa~~~------------~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 130 -ST--------EEGEQFAKEHGLIFMEASAKTA------------QNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred -CH--------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHh
Confidence 11 1267888889999999999999 999999999999987654
No 62
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=1.1e-28 Score=208.61 Aligned_cols=170 Identities=14% Similarity=0.246 Sum_probs=135.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeC
Q 040295 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNL 131 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv 131 (289)
|+|+|++|||||||+++|.++.|...+.++....+. ..+..++..+.+.+|||+|++.|..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 689999999999999999999998877777765553 3445566778999999999999999998999999999999999
Q ss_pred CCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCC
Q 040295 132 NDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEP 209 (289)
Q Consensus 132 ~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (289)
++++||+.+. .|+..+..... .|+++||||+|+...... ...+ .....
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~----~~~~--------------------------~~~~~ 129 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST----LREL--------------------------SKQKQ 129 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh----hhhh--------------------------hcccC
Confidence 9999999996 69999876543 499999999999642110 0111 00000
Q ss_pred cHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 210 SWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 210 ~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.....+.+.++++.+++ +|+||||+++ .||+++|+.|++.++.
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 130 EPVTYEQGEALAKRIGAVKYLECSALTQ------------EGVREVFEEAIRAALN 173 (174)
T ss_pred CCccHHHHHHHHHHcCCcEEEEecCCCC------------CCHHHHHHHHHHHhcC
Confidence 11123447899999997 8999999999 9999999999987754
No 63
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=2.5e-28 Score=203.47 Aligned_cols=161 Identities=21% Similarity=0.377 Sum_probs=138.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||++|++.|......+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988778888888877777777777788999999999999988889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++.+|+.+..|+..+.... ..|+++|+||+|+.+... + .
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~--------~--------------------------~-- 124 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ--------V--------------------------S-- 124 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC--------C--------------------------C--
Confidence 9999999999999999987664 349999999999854211 1 0
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.+.+..++..++++|+|+||+++ .|++++|.+|++.+.+
T Consensus 125 ------~~~~~~~~~~~~~~~~e~Sa~~~------------~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 125 ------REEAEAFAEEHGLPFFETSAKTN------------TNVEEAFEELAREILK 163 (164)
T ss_pred ------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHhh
Confidence 11266788888999999999999 9999999999987653
No 64
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=1e-28 Score=216.62 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=136.3
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH
Q 040295 55 IGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL 134 (289)
Q Consensus 55 lG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~ 134 (289)
+|++|||||||+++|+.+.|...+.+|++.++....+..++..+.+.||||+|+++|..++..|+++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899999888777777777789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHH
Q 040295 135 STLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEI 213 (289)
Q Consensus 135 ~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
.||+.+..|+..+..... .|++|||||+|+.. +.+ ..
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~---------~~v--------------------------~~------- 118 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD---------RKV--------------------------KA------- 118 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECccccc---------ccC--------------------------CH-------
Confidence 999999999999977543 39999999999942 111 00
Q ss_pred HHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 214 RRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 214 ~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
+...++...++.|+||||++| .||.++|.+|++.+.....
T Consensus 119 --~~~~~~~~~~~~~~e~SAk~~------------~~v~~~F~~l~~~i~~~~~ 158 (200)
T smart00176 119 --KSITFHRKKNLQYYDISAKSN------------YNFEKPFLWLARKLIGDPN 158 (200)
T ss_pred --HHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHhccc
Confidence 123677888999999999999 9999999999998876544
No 65
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-31 Score=218.33 Aligned_cols=168 Identities=17% Similarity=0.271 Sum_probs=145.4
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeec---------CcceEEEEEEEcCCchhhhccc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT---------KYYTADVSLWMAHLHEEFSIRS 115 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~---------~~~~~~l~I~Dt~G~e~~~~~~ 115 (289)
++.+.||++.+|++|||||||+.++..+.|..+..+|.+++|....+.. .+..+.+++|||+|||+|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 4566789999999999999999999999999999999999987665432 3456889999999999999999
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
..+++.|-+++++||+++.+||-++.+|+..++.+ ..|.|+++|||+|| +..|.+
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL--------~~~R~V-------------- 142 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL--------EDQRVV-------------- 142 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch--------hhhhhh--------------
Confidence 99999999999999999999999999999999776 34578889999999 456666
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
+.+ ++.++|.++|+||||+||-+| .||++..+.|...++..+
T Consensus 143 ------------s~~--------qa~~La~kyglPYfETSA~tg------------~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 143 ------------SED--------QAAALADKYGLPYFETSACTG------------TNVEKAVELLLDLVMKRI 184 (219)
T ss_pred ------------hHH--------HHHHHHHHhCCCeeeeccccC------------cCHHHHHHHHHHHHHHHH
Confidence 333 389999999999999999999 999988777776665444
No 66
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=2.6e-28 Score=205.85 Aligned_cols=160 Identities=16% Similarity=0.328 Sum_probs=136.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||+++|+++.+...+.++.+..+....+..++..+.+.||||+|+++|..++..+++.+|++|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 45899999999999999999999999988888888887766666667778899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC------CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK------FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~------~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
|||++++++|+.+..|+..+.... ..|+++||||+|+.. +.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---------~~~----------------------- 131 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---------RQV----------------------- 131 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---------ccc-----------------------
Confidence 999999999999999998775432 238999999999952 111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.. +++.+++..+++ +|+++||+++ .|+.++|..+++.+
T Consensus 132 ---~~--------~~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~~~~~~~~~ 170 (170)
T cd04116 132 ---ST--------EEAQAWCRENGDYPYFETSAKDA------------TNVAAAFEEAVRRV 170 (170)
T ss_pred ---CH--------HHHHHHHHHCCCCeEEEEECCCC------------CCHHHHHHHHHhhC
Confidence 11 126788888885 7999999999 99999999998753
No 67
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.5e-28 Score=211.36 Aligned_cols=163 Identities=17% Similarity=0.298 Sum_probs=138.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
+||+|+|++|||||||+++|..+++.. .+.+|.+..+....+..++..+.+.||||||+++|..+...+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999999864 5777888777665566667788999999999999998888899999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
||++++++|+.+..|+..+..... .|+++||||+|+... +.+ ..
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~--------~~~--------------------------~~ 126 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE--------RVV--------------------------KR 126 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc--------ccc--------------------------CH
Confidence 999999999999999999877643 499999999999531 111 11
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
..+..++..++++|+|+||++| .|++++|.+|++.+....
T Consensus 127 --------~~~~~l~~~~~~~~~e~Sa~~~------------~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 127 --------EDGERLAKEYGVPFMETSAKTG------------LNVELAFTAVAKELKHRK 166 (191)
T ss_pred --------HHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHhc
Confidence 1266778888999999999999 999999999999887664
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=1.8e-28 Score=203.37 Aligned_cols=157 Identities=22% Similarity=0.278 Sum_probs=131.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.+++|...+.+|.+..+. ..+..++..+.+.+|||+|++.|+.++..|++.++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEE-EEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 69999999999999999999999988888888776543 33444555678999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++.+|+.+..|+..+.... ..|+++||||+|+.... + .
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~---------~--------------------------~- 124 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART---------V--------------------------S- 124 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce---------e--------------------------c-
Confidence 9999999999999998886652 34899999999995310 1 0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+..++...+++++++||++| .|++++|++|++.+
T Consensus 125 -------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~ 161 (162)
T cd04138 125 -------SRQGQDLAKSYGIPYIETSAKTR------------QGVEEAFYTLVREI 161 (162)
T ss_pred -------HHHHHHHHHHhCCeEEEecCCCC------------CCHHHHHHHHHHHh
Confidence 11256778888999999999999 99999999998753
No 69
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=2.1e-28 Score=204.73 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=131.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||||+++|..++..+++.++++|+||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999998877777776444 334445566788999999999999998889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++++|+.+..|...+.... ..|+++||||+|+.+... + ..
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~--------~--------------------------~~ 125 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV--------V--------------------------ST 125 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce--------E--------------------------cH
Confidence 9999999999999988875542 348999999999964211 1 00
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+..++..++++|++|||+++ .|++++|++|++.+.
T Consensus 126 --------~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~l~~~~~ 162 (164)
T smart00173 126 --------EEGKELARQWGCPFLETSAKER------------VNVDEAFYDLVREIR 162 (164)
T ss_pred --------HHHHHHHHHcCCEEEEeecCCC------------CCHHHHHHHHHHHHh
Confidence 1256778888899999999999 999999999998653
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=3.7e-28 Score=202.74 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=131.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||++++++..+...+.++.+..+. .....++..+.+.+|||||++.|..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 479999999999999999999999887777777775543 2334456678899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++.+|+.+..|+..+... ...|+++|+||+|+..... + .
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~--------~--------------------------~ 126 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK--------V--------------------------S 126 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce--------e--------------------------c
Confidence 9999999999999999888664 2349999999999953211 1 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+..++..++++++++||++| .|++++|++|++.+
T Consensus 127 --------~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~l~~~~ 163 (164)
T cd04145 127 --------REEGQELARKLKIPYIETSAKDR------------LNVDKAFHDLVRVI 163 (164)
T ss_pred --------HHHHHHHHHHcCCcEEEeeCCCC------------CCHHHHHHHHHHhh
Confidence 11266788888999999999999 99999999998754
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=3.6e-28 Score=204.69 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=129.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||++++.++.|...+.+|.+..+.. .+......+.+.+|||+|+++|..+...+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE-EEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999999988888887755532 3333445688999999999999988888899999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc-----CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ-----KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~-----~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|++++++|+.+..|+..++.. ...|+++||||+|+.... .+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~v-------------------------- 126 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKR--------EV-------------------------- 126 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccC--------ee--------------------------
Confidence 999999999999998877654 223899999999995421 11
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
. ...+..++..++++|+||||++| +|++++|++|+.
T Consensus 127 ~--------~~~~~~~~~~~~~~~~e~SA~~g------------~~v~~~f~~l~~ 162 (165)
T cd04140 127 S--------SNEGAACATEWNCAFMETSAKTN------------HNVQELFQELLN 162 (165)
T ss_pred c--------HHHHHHHHHHhCCcEEEeecCCC------------CCHHHHHHHHHh
Confidence 1 11256778888899999999999 999999999975
No 72
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=4.6e-28 Score=209.07 Aligned_cols=166 Identities=16% Similarity=0.257 Sum_probs=138.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
+||+|+|++|||||||+++|.++.|.. .+.+|.+..+....+..++..+.+.+|||+|++++..+...+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 5778888877666666777788999999999999999888899999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
||++++.+|+.+..|+..+..... .|+++||||+|+..... ..+++ .
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----~~~~v--------------------------~-- 128 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR----SLRQV--------------------------D-- 128 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc----ccCcc--------------------------C--
Confidence 999999999999999999877643 49999999999854210 01111 1
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
...+..++..++++++++||+++ .|++++|++|++.+...
T Consensus 129 ------~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 129 ------FHDVQDFADEIKAQHFETSSKTG------------QNVDELFQKVAEDFVSR 168 (193)
T ss_pred ------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHh
Confidence 12266778888899999999999 99999999999888654
No 73
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=4.5e-28 Score=211.59 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=124.2
Q ss_pred CceEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCCcce-EEeeEE--------eecCcceEEEEEEEcCCchhhhc
Q 040295 49 RPGILIIGSSNVGKRTILS-RLLSVN-----FEDASDSSSEL-LVNGWT--------INTKYYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~-rl~~~~-----~~~~~~~t~~~-~~~~~~--------i~~~~~~~~l~I~Dt~G~e~~~~ 113 (289)
.+||+++|++|||||||+. ++.++. |...+.+|++. +.+... +..++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 665543 44567778752 222111 134567899999999999853
Q ss_pred cccccccCccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCccc
Q 040295 114 RSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC 191 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~ 191 (289)
+...+++++|++|+|||++++.||+.+. .|+..++.... .|+++||||+||........ ..... | +
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~-~~~~~---------~--~ 147 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEV-NRARR---------P--L 147 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchh-hhccc---------c--c
Confidence 4556899999999999999999999997 59998876543 48999999999953210000 00000 0 0
Q ss_pred CCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 192 QSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.. +.........++++.+++.++++|+||||++| .||+++|+.+++.
T Consensus 148 ~~-----------~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~------------~~V~e~F~~~~~~ 194 (195)
T cd01873 148 AR-----------PIKNADILPPETGRAVAKELGIPYYETSVVTQ------------FGVKDVFDNAIRA 194 (195)
T ss_pred cc-----------ccccCCccCHHHHHHHHHHhCCEEEEcCCCCC------------CCHHHHHHHHHHh
Confidence 00 00000111123489999999999999999999 9999999999864
No 74
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=8.2e-28 Score=200.74 Aligned_cols=159 Identities=19% Similarity=0.357 Sum_probs=136.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++++++++...+.++.+..+....+..++..+.+.+||++|++++...+..+++++|++|+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999988778888887776677777778889999999999999988888999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+..|+..+..... .|+++|+||+|+..... + +
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------~--------------------------~-- 125 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ--------V--------------------------S-- 125 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc--------C--------------------------C--
Confidence 99999999999999999876652 38999999999863211 1 0
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+..++..++++++++||++| .|+.++|++|++.+
T Consensus 126 ------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~l 162 (163)
T cd01860 126 ------TEEAQEYADENGLLFFETSAKTG------------ENVNELFTEIAKKL 162 (163)
T ss_pred ------HHHHHHHHHHcCCEEEEEECCCC------------CCHHHHHHHHHHHh
Confidence 11256778888899999999999 99999999999875
No 75
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=9.9e-28 Score=199.85 Aligned_cols=158 Identities=18% Similarity=0.329 Sum_probs=135.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||++++++.++...+.++.+.++....+..++..+.+.+|||||++.+..+...+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998878888888877777766777788999999999999998889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+..|+..+..... .|+++||||+|+..... + .
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~--------~--------------------------~-- 124 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ--------V--------------------------S-- 124 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc--------c--------------------------C--
Confidence 99999999999999999876654 59999999999953211 1 0
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.+.+..++...+++++++||+++ .|++++|.+|++.
T Consensus 125 ------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~i~~~ 160 (161)
T cd01861 125 ------TEEGEKKAKELNAMFIETSAKAG------------HNVKELFRKIASA 160 (161)
T ss_pred ------HHHHHHHHHHhCCEEEEEeCCCC------------CCHHHHHHHHHHh
Confidence 11256667777899999999999 9999999999875
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=1e-27 Score=200.54 Aligned_cols=159 Identities=13% Similarity=0.208 Sum_probs=131.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcceEEeeEEeec-CcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV--NFEDASDSSSELLVNGWTINT-KYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~--~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
+||+++|++|||||||++++..+ .+...+.+|.+.++....+.. .+..+++.+|||+|++.+..+...+++.+|++|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 677788888887765444433 356789999999999999988889999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
+|||++++++|+.+..|+..+.... ..|+++||||+|+.+... + .
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~--------------------------~ 126 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE--------V--------------------------T 126 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC--------C--------------------------C
Confidence 9999999999999999999987664 348999999999954211 1 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+.+..+...++++|+++||+++ .|++++|+.|++..
T Consensus 127 --------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~ 163 (164)
T cd04101 127 --------DAQAQAFAQANQLKFFKTSALRG------------VGYEEPFESLARAF 163 (164)
T ss_pred --------HHHHHHHHHHcCCeEEEEeCCCC------------CChHHHHHHHHHHh
Confidence 01145667777899999999999 99999999998865
No 77
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=3.2e-28 Score=205.22 Aligned_cols=153 Identities=15% Similarity=0.246 Sum_probs=122.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|+.+.|...+.++.+ .+ ...+..++..+.+.+|||+|++.. .+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEE
Confidence 5899999999999999999999998776655543 33 244555666788999999999853 4678899999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|+++++||+.+..|+..+.... ..|+++||||.|+.... .+.+ +.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~------~~~v--------------------------~~ 121 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN------PRVI--------------------------DD 121 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC------Cccc--------------------------CH
Confidence 9999999999999999997664 23999999999984211 1222 11
Q ss_pred CCCcHHHHHHHHHHHHHc-CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 207 EEPSWEIRRSCLEWCTEH-RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~-~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
+.+.++++.. ++.|+||||+++ .||+++|..+++.
T Consensus 122 --------~~~~~~~~~~~~~~~~e~SAk~~------------~~i~~~f~~~~~~ 157 (158)
T cd04103 122 --------ARARQLCADMKRCSYYETCATYG------------LNVERVFQEAAQK 157 (158)
T ss_pred --------HHHHHHHHHhCCCcEEEEecCCC------------CCHHHHHHHHHhh
Confidence 2267888776 489999999999 9999999999864
No 78
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=1.4e-27 Score=202.74 Aligned_cols=167 Identities=13% Similarity=0.169 Sum_probs=131.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.++.|...+.+|... .+...+..++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 58999999999999999999999998888887743 33445555667789999999999999999989999999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+. .|+..+.... ..|+++||||+|+.+..... .+.. . .
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~--------------------------~-~ 129 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVL---IQLA--------------------------R-Y 129 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHH---HHHh--------------------------h-c
Confidence 999999999985 6998887543 34899999999996431100 0000 0 0
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHH
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALS 259 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~ 259 (289)
.......+++..+++..++ +|+||||++| .||+++|+.++
T Consensus 130 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~------------~~v~~lf~~~~ 170 (173)
T cd04130 130 GEKPVSQSRAKALAEKIGACEYIECSALTQ------------KNLKEVFDTAI 170 (173)
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEEeCCCC------------CCHHHHHHHHH
Confidence 0001112347889999998 8999999999 99999999875
No 79
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=2.7e-27 Score=200.12 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=133.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|..+.|...+.++....+ ...+..++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999877777776443 334455666788999999999999999989999999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++.+|+.+. .|+..+.... ..|+++||||+|+.+... ....+. ...
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~----~~~~~~-------------------------~~~ 130 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPK----TLARLN-------------------------DMK 130 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChh----hHHHHh-------------------------hcc
Confidence 999999999996 6888886653 338999999999964321 111110 000
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
........+..+++..++ +|+||||++| .|++++|+.++..+
T Consensus 131 -~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~------------~gi~~~f~~~~~~~ 173 (174)
T cd04135 131 -EKPVTVEQGQKLAKEIGAHCYVECSALTQ------------KGLKTVFDEAILAI 173 (174)
T ss_pred -CCCCCHHHHHHHHHHcCCCEEEEecCCcC------------CCHHHHHHHHHHHh
Confidence 000112337889998986 7999999999 99999999999875
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.5e-27 Score=202.75 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=136.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
+.+||+++|++|||||||+++|+++.|. ..+.+|.+..+....+..++..+.+.+||++|++.+..+...+++++|++|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4589999999999999999999999998 788899888775555555666788999999999999988888999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
+|||++++.+|+.+..|+..+......|+++|+||+|+.+.. +. ..
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--------~~--------------------------~~ 128 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQ--------QR--------------------------YE 128 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccc--------cc--------------------------cc
Confidence 999999999999999999877544456999999999995321 11 11
Q ss_pred CCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 207 EEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+ +.++++.+++ .++++||+++ .|++++|+.|.+.+.
T Consensus 129 ~~--------~~~~~~~~~~~~~~~~Sa~~~------------~~v~~lf~~l~~~~~ 166 (169)
T cd01892 129 VQ--------PDEFCRKLGLPPPLHFSSKLG------------DSSNELFTKLATAAQ 166 (169)
T ss_pred cC--------HHHHHHHcCCCCCEEEEeccC------------ccHHHHHHHHHHHhh
Confidence 11 5678888887 4799999999 999999999998765
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=4.1e-27 Score=196.35 Aligned_cols=158 Identities=20% Similarity=0.374 Sum_probs=134.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999987778888888776665656666788999999999999988888999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++.+|+.+..|+..+.... ..|+++||||+|+.... . .
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~---------~--------------------------~- 124 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE---------V--------------------------T- 124 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc---------c--------------------------C-
Confidence 9999999999999999887653 33899999999995211 0 0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+....++...+++|+++||++| .|++++++.++..+
T Consensus 125 -------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~~~~~~~~~~ 161 (161)
T cd01863 125 -------REEGLKFARKHNMLFIETSAKTR------------DGVQQAFEELVEKI 161 (161)
T ss_pred -------HHHHHHHHHHcCCEEEEEecCCC------------CCHHHHHHHHHHhC
Confidence 11256778888999999999999 99999999998753
No 82
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=2.8e-27 Score=206.97 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=128.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc--------ccccccC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR--------SLPISDQ 121 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~--------~~~~~~~ 121 (289)
+||+|+|++|||||||+++|.+++|...+.+|.+..++...+..++..+.+.+|||+|.+.|... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888876665555556677789999999997654321 2234788
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcC-----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQK-----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~-----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
+|++|+|||+++++||+.+..|+..+.... ..|+++||||+|+... +.+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--------~~~------------------ 134 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--------RFA------------------ 134 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--------ccc------------------
Confidence 999999999999999999999998886542 3499999999999532 111
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHH-HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCT-EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+. +.+..++. .++++|+||||++| .||+++|+.+.+.++..
T Consensus 135 --------~~--------~~~~~~~~~~~~~~~~e~Sak~g------------~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 135 --------PR--------HVLSVLVRKSWKCGYLECSAKYN------------WHILLLFKELLISATTR 176 (198)
T ss_pred --------cH--------HHHHHHHHHhcCCcEEEecCCCC------------CCHHHHHHHHHHHhhcc
Confidence 11 11455654 56899999999999 99999999999888754
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=8.3e-28 Score=202.04 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=127.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh-hhccccccccCccEEEEEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE-FSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~-~~~~~~~~~~~ad~vIlV~ 129 (289)
||+++|++|||||||+++++.+.|...+.++....+ ...+..++..+.+++|||+|++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 699999999999999999999888777777775444 23344456678899999999985 3444567889999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|++++.||+.+..|+..+.... ..|+++||||+|+... +.+ +
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~v--------------------------~ 125 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--------RQV--------------------------S 125 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--------Ccc--------------------------C
Confidence 9999999999999998887653 3489999999998421 222 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCch-hHHHHHHHHHHhcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQ-GVERLYGALSAHMW 263 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~-~i~~l~~~L~~~~~ 263 (289)
. +.+..++...+++|++|||+++ . ||+++|+.|++.+.
T Consensus 126 ~--------~~~~~~~~~~~~~~~e~Sa~~~------------~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 126 T--------EEGEKLASELGCLFFEVSAAED------------YDGVHSVFHELCREVR 164 (165)
T ss_pred H--------HHHHHHHHHcCCEEEEeCCCCC------------chhHHHHHHHHHHHHh
Confidence 1 1267888888999999999998 7 89999999998654
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=5.3e-27 Score=198.14 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=133.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+++|||+|++.|..++..+++.++++|+||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999999999887888887554 344555667789999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++++|+.+..|...+... ...|+++||||+|+.+... + ..
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~--------~--------------------------~~ 126 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQ--------V--------------------------SR 126 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCc--------c--------------------------CH
Confidence 999999999999999888653 2348999999999954211 1 11
Q ss_pred CCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 207 EEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
..+..+++.++ ++|+++||+++ .|++++|++++++++.
T Consensus 127 --------~~~~~~~~~~~~~~~~~~SA~~~------------~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 127 --------EDGVSLSQQWGNVPFYETSARKR------------TNVDEVFIDLVRQIIC 165 (168)
T ss_pred --------HHHHHHHHHcCCceEEEeeCCCC------------CCHHHHHHHHHHHHhh
Confidence 11456677777 78999999999 9999999999988764
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=1.5e-26 Score=191.81 Aligned_cols=159 Identities=19% Similarity=0.361 Sum_probs=132.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.++.+...+.++.+..+....+...+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999987766677766665555555566788999999999999999988999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++++.+..|+..+..... .|+++|+||+|+....+ + ..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~--------~--------------------------~~- 125 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV--------V--------------------------SK- 125 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC--------C--------------------------CH-
Confidence 99999999999999998876643 48999999999963211 1 00
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+.+++...+++++++||+++ .|++++|++|.+.+
T Consensus 126 -------~~~~~~~~~~~~~~~~~s~~~~------------~gi~~~~~~l~~~~ 161 (162)
T cd04123 126 -------SEAEEYAKSVGAKHFETSAKTG------------KGIEELFLSLAKRM 161 (162)
T ss_pred -------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHh
Confidence 1145667778899999999999 99999999998865
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=1.2e-26 Score=195.06 Aligned_cols=163 Identities=17% Similarity=0.366 Sum_probs=136.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.|..++..++++++++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888887776666666667788999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC------CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK------FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~------~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|++++++|+.+..|...+.... ..|+++|+||+|+..... +
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~------------------------- 127 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ--------V------------------------- 127 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc--------c-------------------------
Confidence 9999999999999988764332 349999999999963111 0
Q ss_pred CCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
+ ...+..++...+ ++++++||++| .|++++|+++.+.+....
T Consensus 128 -~--------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 128 -S--------TKKAQQWCQSNGNIPYFETSAKEA------------INVEQAFETIARKALEQE 170 (172)
T ss_pred -C--------HHHHHHHHHHcCCceEEEEECCCC------------CCHHHHHHHHHHHHHhcc
Confidence 0 112567777787 68999999999 999999999998877653
No 87
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=5e-29 Score=201.52 Aligned_cols=157 Identities=19% Similarity=0.299 Sum_probs=142.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCC
Q 040295 54 IIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLN 132 (289)
Q Consensus 54 ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~ 132 (289)
++|++++|||+|+-||..+-|.. ...+|.+.+|.+..+..++..+++++|||+|||+|+++...|++.||+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999998887754 46789999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCc
Q 040295 133 DLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPS 210 (289)
Q Consensus 133 ~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (289)
+..||++++.|+..|..+... -+.++|||+|+.+ +|.+ ..++
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~--------er~v--------------------------~~dd-- 125 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH--------ERAV--------------------------KRDD-- 125 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch--------hhcc--------------------------ccch--
Confidence 999999999999999888655 6778999999954 5666 5555
Q ss_pred HHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 211 WEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.+.++..+++|++|+|||+| -||+..|-.|.+.+..
T Consensus 126 ------g~kla~~y~ipfmetsaktg------------~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 126 ------GEKLAEAYGIPFMETSAKTG------------FNVDLAFLAIAEELKK 161 (192)
T ss_pred ------HHHHHHHHCCCceecccccc------------ccHhHHHHHHHHHHHH
Confidence 89999999999999999999 9999999999988754
No 88
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=1.3e-26 Score=196.12 Aligned_cols=170 Identities=16% Similarity=0.257 Sum_probs=132.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
.||+|+|++|||||||+++|.++.|...+.+|.+..+.. .+...+..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 589999999999999999999999988888888766532 3445566788999999999999888888899999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+. .|+..+.... ..|+++||||+|+.+... ....+ ...
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~i--------------------------~~~ 130 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH----TRREL--------------------------AKM 130 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh----hhhhh--------------------------hhc
Confidence 999999999986 6888887653 349999999999864321 11111 000
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.........+.+++...+. +|++|||++| .|++++|.+|++.+
T Consensus 131 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~lf~~l~~~~ 174 (175)
T cd01870 131 KQEPVKPEEGRDMANKIGAFGYMECSAKTK------------EGVREVFEMATRAA 174 (175)
T ss_pred cCCCccHHHHHHHHHHcCCcEEEEeccccC------------cCHHHHHHHHHHHh
Confidence 0000112347788888775 7999999999 99999999998754
No 89
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=8.4e-27 Score=210.78 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=129.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|+++.|...+.+|++ +++...+..++..+.+.||||+|++.|..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886 333444555667789999999999999888888889999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc-----------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ-----------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~-----------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
|+++++||+.+..|+..+... ...|+|+||||+|+... +.+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--------~~v-------------------- 131 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--------REV-------------------- 131 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--------ccc--------------------
Confidence 999999999999999888543 23499999999999531 111
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHH-cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTE-HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.. .++.+++.. .++.|+++||+++ .|++++|++|...+.-.
T Consensus 132 ------~~--------~ei~~~~~~~~~~~~~evSAktg------------~gI~elf~~L~~~~~~p 173 (247)
T cd04143 132 ------QR--------DEVEQLVGGDENCAYFEVSAKKN------------SNLDEMFRALFSLAKLP 173 (247)
T ss_pred ------CH--------HHHHHHHHhcCCCEEEEEeCCCC------------CCHHHHHHHHHHHhccc
Confidence 11 114455443 4678999999999 99999999999866433
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=203.96 Aligned_cols=166 Identities=19% Similarity=0.316 Sum_probs=135.0
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|+++.+ ..+.++.+.++....+..++..+.+.+|||||+++|..++..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 344568999999999999999999999887 4567788877766666556667889999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHH-HHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 125 LVMVFNLNDLSTLDALKH-WVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~-~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
+|+|||++++++|+.+.. |...+... ...|+++||||+|+.......
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~----------------------------- 139 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS----------------------------- 139 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-----------------------------
Confidence 999999999999999975 76666543 233889999999995422110
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+.+..++..+++.|+|+||+++ .|++++|.+|...+...
T Consensus 140 -------------~~~~~~~~~~~~~~~~e~SAk~~------------~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 140 -------------REEGMALAKEHGCLFLECSAKTR------------ENVEQCFEELALKIMEV 179 (211)
T ss_pred -------------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHhh
Confidence 11256777788899999999999 99999999999888544
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=2.7e-26 Score=203.89 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=130.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccccccc-CccEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISD-QLTALVM 127 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~-~ad~vIl 127 (289)
+||+++|++|||||||+++|..+.+. ..+.++.+.+++...+..++....+.+|||+|++.+ +...+++ ++|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 667777765565556666667788999999999832 3344566 8999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+|+.+..|+..+.... ..|+|+||||+|+... +.+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~--------~~v-------------------------- 124 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS--------REV-------------------------- 124 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc--------cee--------------------------
Confidence 999999999999999999887653 3499999999999542 112
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
+. +.+..++...+++|+||||+++ .||+++|+.|++.+.....
T Consensus 125 ~~--------~~~~~~a~~~~~~~~e~SA~~~------------~gv~~l~~~l~~~~~~~~~ 167 (221)
T cd04148 125 SV--------QEGRACAVVFDCKFIETSAGLQ------------HNVDELLEGIVRQIRLRRD 167 (221)
T ss_pred cH--------HHHHHHHHHcCCeEEEecCCCC------------CCHHHHHHHHHHHHHhhhc
Confidence 11 1156777788899999999999 9999999999998864443
No 92
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=7.6e-26 Score=190.14 Aligned_cols=162 Identities=20% Similarity=0.329 Sum_probs=133.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|++.|......+++.+|++|+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999888877777888777666666667777889999999999999888889999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++.+|+.+..|+..+..... .|+++||||+|+....... ..
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~----~~---------------------------- 133 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVS----QQ---------------------------- 133 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC----HH----------------------------
Confidence 9999999999999999988866533 4889999999995322111 00
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
....+.+.....+++|||++| .|+.++|..|+++++
T Consensus 134 ----------~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~i~~~~~ 169 (169)
T cd04114 134 ----------RAEEFSDAQDMYYLETSAKES------------DNVEKLFLDLACRLI 169 (169)
T ss_pred ----------HHHHHHHHcCCeEEEeeCCCC------------CCHHHHHHHHHHHhC
Confidence 145566666788999999999 999999999998653
No 93
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=5.3e-26 Score=199.78 Aligned_cols=172 Identities=17% Similarity=0.179 Sum_probs=135.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeec-----CcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT-----KYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~-----~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
+||+++|++|||||||+++|.++.|...+.+|++..+....+.. .+..+.++||||+|++.|..+...+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888899987664443332 2467899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhc---------------------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhccc
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQ---------------------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREE 183 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~---------------------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~ 183 (289)
+|+|||+++++||+.+..|+..+... ...|+||||||+|+.+. |.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--------r~~----- 147 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--------KES----- 147 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--------ccc-----
Confidence 99999999999999999999998653 12399999999999542 222
Q ss_pred CCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 184 SSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
........+..++...+++.++.++++. .-......+...+.+.|+.++++
T Consensus 148 -------------------------~~~~~~~~~~~ia~~~~~~~i~~~c~~~--~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 148 -------------------------SGNLVLTARGFVAEQGNAEEINLNCTNG--RLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred -------------------------chHHHhhHhhhHHHhcCCceEEEecCCc--ccccCCCccHHHHHHHHHHHHHh
Confidence 1112223367889999999999988865 22233444567788888888764
No 94
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=6.3e-26 Score=186.04 Aligned_cols=156 Identities=21% Similarity=0.376 Sum_probs=135.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||++++.+..+...+.+|.+.++....+...+..+.+.+||+||++.+......+++++|++|+||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888777777777889999999999999988889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|.+++++++.+..|+..+.... ..|+++|+||+|+..... .
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~----------------------------- 123 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ--------V----------------------------- 123 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc--------c-----------------------------
Confidence 9999999999999999987765 349999999999952110 0
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHH
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALS 259 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~ 259 (289)
....+..++..++++|+++||+++ .|++++|.+|.
T Consensus 124 -----~~~~~~~~~~~~~~~~~~~sa~~~------------~~i~~~~~~i~ 158 (159)
T cd00154 124 -----STEEAQQFAKENGLLFFETSAKTG------------ENVEELFQSLA 158 (159)
T ss_pred -----cHHHHHHHHHHcCCeEEEEecCCC------------CCHHHHHHHHh
Confidence 012266778788899999999999 99999999886
No 95
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=9.4e-26 Score=187.66 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=131.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||++++....+...+.++.+..+. ..+..++..+.+.+|||+|++.+......+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999999988777777765443 33445556788999999999999998889999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++.+|+.+..|+..+... ...|+++|+||+|+...... ..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~----~~------------------------------ 125 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV----SS------------------------------ 125 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc----CH------------------------------
Confidence 999999999999999888765 33499999999999641100 00
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.....++..++++|+++||+++ .|++++|..|++++.
T Consensus 126 --------~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~ 162 (164)
T cd04139 126 --------EEAANLARQWGVPYVETSAKTR------------QNVEKAFYDLVREIR 162 (164)
T ss_pred --------HHHHHHHHHhCCeEEEeeCCCC------------CCHHHHHHHHHHHHH
Confidence 1145677778899999999999 999999999998764
No 96
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=1.5e-26 Score=202.33 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=141.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|.+|||||+|..+|+...|...|.+|++..+ ...+..++..+.+.|+||+|++.|..+...|+++++|+++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 47999999999999999999999999999999999544 45555567889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcCC--C-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQKF--E-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~~--~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|+++++.||+.+..++..|.+.+. . |+++||||+|+. ..|.+ +
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~--------~~R~V--------------------------~ 127 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE--------RERQV--------------------------S 127 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch--------hcccc--------------------------C
Confidence 999999999999999999944332 2 999999999994 34556 3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.++ +..++..++++|+|+||+.+ .+++++|..|++.+-.
T Consensus 128 ~ee--------g~~la~~~~~~f~E~Sak~~------------~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 128 EEE--------GKALARSWGCAFIETSAKLN------------YNVDEVFYELVREIRL 166 (196)
T ss_pred HHH--------HHHHHHhcCCcEEEeeccCC------------cCHHHHHHHHHHHHHh
Confidence 333 88889999999999999999 9999999999997755
No 97
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=1.6e-25 Score=197.12 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=145.0
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+++|++|||||||+++++.+.+...+.+|.+..+....+..++..+.+.+|||+|++.|..++..+++++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34556999999999999999999999999888899999998887777667778999999999999999888889999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|+|||+++..+|..+..|+..+.... ..|+++||||+|+... .+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~---------~~------------------------- 130 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR---------QV------------------------- 130 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc---------cC-------------------------
Confidence 999999999999999999999886543 3388899999998421 01
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCCCCC
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKIT 275 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~~ 275 (289)
. .+...++...++.|+++||+++ .|++++|.+|++.+.....+.-.+.++
T Consensus 131 -~---------~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 131 -K---------ARQITFHRKKNLQYYDISAKSN------------YNFEKPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred -C---------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHhhcccceecCCcc
Confidence 0 0133567778899999999999 999999999999887665544444443
No 98
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=3.2e-26 Score=193.62 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=124.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeC
Q 040295 52 ILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNL 131 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv 131 (289)
|+++|++|||||||+++|.++.+...+.+|.+..+. .+. ...+++.+|||+|++.|+.++..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~--~i~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV--AIP--TQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE--EEe--eCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 799999999999999999999888778888886542 332 3467899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHhhhc-CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCc
Q 040295 132 NDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPS 210 (289)
Q Consensus 132 ~~~~S~~~l~~~~~~i~~~-~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (289)
+++.+|..++.|+..+... ...|+++||||+|+....... +.....
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~-~i~~~~-------------------------------- 124 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQ-EIHKEL-------------------------------- 124 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH-HHHHHh--------------------------------
Confidence 9999999999998888543 345999999999995432111 000111
Q ss_pred HHHHHHHHHHHHHcCCeEEEeecCC------CcccccccCCCCchhHHHHHHHHHH
Q 040295 211 WEIRRSCLEWCTEHRIEYIEACASN------VDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~ie~Sa~~------~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
++..++.+.++.+++|||++ + +||.++|..|+.
T Consensus 125 -----~~~~~~~~~~~~~~~~Sa~~~~s~~~~------------~~v~~~~~~~~~ 163 (164)
T cd04162 125 -----ELEPIARGRRWILQGTSLDDDGSPSRM------------EAVKDLLSQLIN 163 (164)
T ss_pred -----CChhhcCCCceEEEEeeecCCCChhHH------------HHHHHHHHHHhc
Confidence 14567777788899998888 8 999999999864
No 99
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=4.5e-26 Score=196.07 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=129.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeec-CcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT-KYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
.+||+++|++|||||||++++..+.+... .+|.+..+....+.. ++..+.+.+|||+|+++|..++..+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999999888644 566666665555543 3456889999999999999989899999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+++.+..|+..+... ...|+++|+||+|+...... +......
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~------------------------- 134 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV--SEVEKLL------------------------- 134 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH--HHHHHHh-------------------------
Confidence 99999999999999888877543 33499999999999532110 1111110
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccC
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSG 271 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~ 271 (289)
. ...+....+++++++||+++ +|++++|.+|.+.++..+.+.+.
T Consensus 135 ~-----------~~~~~~~~~~~~~~~SA~~~------------~gi~~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 135 A-----------LHELSASTPWHVQPACAIIG------------EGLQEGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred C-----------ccccCCCCceEEEEeecccC------------CCHHHHHHHHHHHHHHHHhhhhh
Confidence 0 01111112356899999999 99999999999988766655443
No 100
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=8.2e-26 Score=194.67 Aligned_cols=162 Identities=20% Similarity=0.212 Sum_probs=123.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||++++..+.+.. +.+|.+..+.... . ..+.+.+|||+|++.++.++..+++++|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVE--Y--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999998888764 5677776654332 2 347899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++++|+.+..|+..+... ...|+++||||.|+..... ..+....+
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l--------------------------- 143 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS-TTEVTEKL--------------------------- 143 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHh---------------------------
Confidence 9999999999998877766332 3458999999999853211 00111111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
...++....+.++++||++| .|++++|++|.+.+.+.|
T Consensus 144 -----------~~~~~~~~~~~~~~~Sa~tg------------~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 144 -----------GLHSVRQRNWYIQGCCATTA------------QGLYEGLDWLSANIKKSM 181 (182)
T ss_pred -----------CCCcccCCcEEEEeeeCCCC------------CCHHHHHHHHHHHHHHhc
Confidence 11122223456779999999 999999999998887665
No 101
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=2.4e-25 Score=184.23 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=130.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+|+|++|||||||++++++..+...+.++.. ..........+..+.+.+||++|++.+..+...+++.++++|+|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 799999999999999999999888777777776 3344455556667889999999999998888888999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++++++.+..|...+.... ..|+++|+||+|+..... + .
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~--------------------------~-- 123 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ--------V--------------------------S-- 123 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce--------e--------------------------c--
Confidence 999999999999988886653 359999999999964211 1 1
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+..++..++++++++||+++ .|++++|+.|.+++
T Consensus 124 ------~~~~~~~~~~~~~~~~~~S~~~~------------~~i~~l~~~l~~~i 160 (160)
T cd00876 124 ------KEEGKALAKEWGCPFIETSAKDN------------INIDEVFKLLVREI 160 (160)
T ss_pred ------HHHHHHHHHHcCCcEEEeccCCC------------CCHHHHHHHHHhhC
Confidence 12267777888899999999999 99999999998754
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.94 E-value=8e-26 Score=190.13 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=93.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|.+|||||||++++..+.+. .+.+|.+..+... .. ..+.+.+|||+|+++|..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~--~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999888886 4677777655322 22 3578999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLP 166 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~ 166 (289)
|++++.+|+.+..|+..+... ...|+++||||+|+..
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 999999999999887766432 2358999999999953
No 103
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=1.4e-25 Score=193.44 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=131.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
.||+|+|++|||||||+++|..+.+.+.+.++....+.. .+...+..+.+.+|||+|++.+......+++.++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 589999999999999999999888877676776655432 3333456678999999999988877767789999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++++|+.+. .|+..+..... .|+++||||+|+....... +. ..
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~-~~--~~----------------------------- 128 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAK-EE--YR----------------------------- 128 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccc-cc--cc-----------------------------
Confidence 999999999997 69998876533 4999999999985321100 00 00
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
.........+..+++..++ +||||||++| .|++++|+.|.+.++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 129 TQRFVPIQQGKRVAKEIGAKKYMECSALTG------------EGVDDVFEAATRAALLVR 176 (187)
T ss_pred cCCcCCHHHHHHHHHHhCCcEEEEccCCCC------------CCHHHHHHHHHHHHhccc
Confidence 0000112237788999985 8999999999 999999999998775543
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=3.6e-25 Score=185.88 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=129.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.+..+...+.++....+ ...+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999998767767665443 334444566788999999999988888888889999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++.+|..+. .|+..+..... .|+++||||+|+...... ... + ..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~------------~------~~~------- 129 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENT-----LKK------------L------EKG------- 129 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhh-----hhh------------c------ccC-------
Confidence 999999998876 58887766543 499999999999643210 000 0 000
Q ss_pred CCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 208 EPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
........+..++..+++ +|+++||+++ .|+.++|.+|++
T Consensus 130 -~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~i~~ 170 (171)
T cd00157 130 -KEPITPEEGEKLAKEIGAIGYMECSALTQ------------EGVKEVFEEAIR 170 (171)
T ss_pred -CCccCHHHHHHHHHHhCCeEEEEeecCCC------------CCHHHHHHHHhh
Confidence 000112337788888888 8999999999 999999999875
No 105
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=1.2e-25 Score=191.03 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=119.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+++|++|||||||+++|..+.+. .+.+|.+..+.... . ..+.+.+|||+|++++..++..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~--~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT--Y--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999988875 45677776654322 2 35789999999999999988899999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+|+.+..|+..+... ...|+++||||+|+..... ..+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~--------------------------- 130 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK-----PHE--------------------------- 130 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC-----HHH---------------------------
Confidence 99999999999998888766432 3458999999999953211 011
Q ss_pred CCCCCcHHHHHHHHHHHH-----HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 205 GDEEPSWEIRRSCLEWCT-----EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~-----~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
+..++. ...+.++++||++| .|++++|++|.+
T Consensus 131 ------------i~~~~~~~~~~~~~~~~~~~SAk~g------------~gv~~~~~~l~~ 167 (168)
T cd04149 131 ------------IQEKLGLTRIRDRNWYVQPSCATSG------------DGLYEGLTWLSS 167 (168)
T ss_pred ------------HHHHcCCCccCCCcEEEEEeeCCCC------------CChHHHHHHHhc
Confidence 223221 12357899999999 999999999975
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=1.5e-25 Score=191.54 Aligned_cols=159 Identities=20% Similarity=0.204 Sum_probs=120.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||+++|..+.+. .+.+|.+..+.... . ..+.+.+|||+|++.+..++..|+++++++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT--Y--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999888874 46678776654333 2 35789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+|+.+..|+..+... ...|++|||||+|+..... ..+..+.+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~-------------------------- 139 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-AAEITEKL-------------------------- 139 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-HHHHHHHh--------------------------
Confidence 99999999999999888777433 2348999999999953211 00000111
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
....+....+.++++||++| .|+.++|++|.+++
T Consensus 140 ------------~~~~~~~~~~~~~~~Sa~~g------------~gv~e~~~~l~~~~ 173 (175)
T smart00177 140 ------------GLHSIRDRNWYIQPTCATSG------------DGLYEGLTWLSNNL 173 (175)
T ss_pred ------------CccccCCCcEEEEEeeCCCC------------CCHHHHHHHHHHHh
Confidence 00111222345778999999 99999999998764
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=3.6e-25 Score=190.64 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=94.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||++++..+.+. .+.+|.+..+.. +. ...+.+.+||++|++.|+.++..+++++|++|+|
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999988875 466787766543 22 2357899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLP 166 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~ 166 (289)
||++++++|+.+..|+..+... ...|++|||||+|+..
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 9999999999998887766432 3458999999999953
No 108
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=1.1e-25 Score=190.92 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=123.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+++|++|||||||+++|.+..+.. +.+|.+..+... . ...+.+.+|||||++.+...+..+++++|++|+|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~--~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETV--E--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEE--E--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987754 667777665432 2 235789999999999998888889999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++++|+.+..|+..+... ...|+++||||+|+.... ..+.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~--------------------------------- 120 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL--SVEE--------------------------------- 120 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC--CHHH---------------------------------
Confidence 99999999999999888543 235899999999995321 0011
Q ss_pred CCcHHHHHHHHHHHHHc------CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 208 EPSWEIRRSCLEWCTEH------RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~------~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
+..++... .+.+++|||++| .||+++|++|++.+.++-.+
T Consensus 121 ---------~~~~~~~~~~~~~~~~~~~~~Sa~~g------------~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 121 ---------MTELLSLHKLCCGRSWYIQGCDARSG------------MGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred ---------HHHHhCCccccCCCcEEEEeCcCCCC------------CCHHHHHHHHHHHHhhcccc
Confidence 22332211 236889999999 99999999999988777544
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=9e-25 Score=184.32 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|.++.|...+..+... + .......+..+++.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-I-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccc-e-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999987654443322 1 233333455688999999999888776677789999999999
Q ss_pred eCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 130 NLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 130 Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|++++.+|+.+. .|+..++.... .|+++||||+|+.+.....
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~------------------------------------ 122 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA------------------------------------ 122 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh------------------------------------
Confidence 999999999986 68888876533 4999999999996532110
Q ss_pred CCcHHHHHHHHHHHHHc-CC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 208 EPSWEIRRSCLEWCTEH-RI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
........++..+ ++ ++++|||+++ .|++++|..+.+.++.
T Consensus 123 ----~~~~~~~~~~~~~~~~~~~~e~Sa~~~------------~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 123 ----GLEEEMLPIMNEFREIETCVECSAKTL------------INVSEVFYYAQKAVLH 165 (166)
T ss_pred ----HHHHHHHHHHHHHhcccEEEEeccccc------------cCHHHHHHHHHHHhcC
Confidence 0001123333333 33 7999999999 9999999999887654
No 110
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=4.8e-25 Score=191.94 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=127.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+++|++|||||||+++|+++.+...+.++... +....+...+..+.+.+||++|++.|..++..+++.+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999999988777777653 333344555667889999999999998888889999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++.+|+.+..|+..+.... ..|+|+|+||+|+.+.. +.+ ..
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-------~~v--------------------------~~- 125 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE-------RQV--------------------------PA- 125 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc-------ccc--------------------------cH-
Confidence 999999999999998876542 34999999999996421 111 00
Q ss_pred CCcHHHHHHHHHHH-HHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 208 EPSWEIRRSCLEWC-TEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
..+.+.. ...+++|+++||++| .|+.++|++|++.+.....
T Consensus 126 -------~~~~~~~~~~~~~~~~~~Sa~~g------------~gv~~l~~~l~~~~~~~~~ 167 (198)
T cd04147 126 -------KDALSTVELDWNCGFVETSAKDN------------ENVLEVFKELLRQANLPYN 167 (198)
T ss_pred -------HHHHHHHHhhcCCcEEEecCCCC------------CCHHHHHHHHHHHhhcccc
Confidence 0022222 245678999999999 9999999999987754433
No 111
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.93 E-value=6.1e-26 Score=196.81 Aligned_cols=177 Identities=18% Similarity=0.272 Sum_probs=146.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeec-CcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINT-KYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
..+|++|+|+.+||||+|+..+..+.|+..|.+|.-..| ...+.. ++..+.+.+|||+||+.|..++..-+.++|.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 358999999999999999999999999999999998554 455566 588999999999999999998877899999999
Q ss_pred EEEeCCCHhhHHHHH-HHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALK-HWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~-~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+||++.++.||+++. +|+++++++.+. |+|+||+|.||+... ...+.+ . .++.+..
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~----~~~~~l---~---------------~~~~~~V 139 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDP----STLEKL---Q---------------RQGLEPV 139 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCH----HHHHHH---H---------------hccCCcc
Confidence 999999999999987 899999999866 999999999998432 122222 0 1122222
Q ss_pred CCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
+.+ ++..++++.|. .|+||||++. .|+.++|+..+...+...+
T Consensus 140 t~~--------~g~~lA~~iga~~y~EcSa~tq------------~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 140 TYE--------QGLELAKEIGAVKYLECSALTQ------------KGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred cHH--------HHHHHHHHhCcceeeeehhhhh------------CCcHHHHHHHHHHHhcccc
Confidence 333 38999999994 7999999999 9999999999998887754
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=7.8e-25 Score=185.90 Aligned_cols=152 Identities=21% Similarity=0.215 Sum_probs=119.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||+++|.+..+ ..+.+|.+.....+.+ + .+.+.+|||||++.++.++..+++.+|++|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~--~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEY--E--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 458999999999999999999998865 4566777754444333 2 4679999999999998888889999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+|+.+..|+..+... ...|+++|+||+|+..... ..+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----~~~--------------------------- 135 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS-----EEE--------------------------- 135 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC-----HHH---------------------------
Confidence 99999999999998888776432 3449999999999954210 011
Q ss_pred CCCCCcHHHHHHHHHHH-----HHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 205 GDEEPSWEIRRSCLEWC-----TEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-----~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
+..++ ...+++++++||++| .|++++|++|+.
T Consensus 136 ------------~~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~ 172 (173)
T cd04154 136 ------------IREALELDKISSHHWRIQPCSAVTG------------EGLLQGIDWLVD 172 (173)
T ss_pred ------------HHHHhCccccCCCceEEEeccCCCC------------cCHHHHHHHHhc
Confidence 22332 234678999999999 999999999864
No 113
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=2.3e-24 Score=183.59 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=129.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
.||+|+|++|||||||+++|....+...+.++.+..+. ..+...+..+.+.+|||||++.|..++..++..++++|+||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE-EEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999887767677665442 33344555678999999999999988888999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|+++..+|+.+..|+..+.... ..|+|+|+||+|+.... .+ ..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--------~~--------------------------~~ 126 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR--------QV--------------------------ST 126 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC--------cc--------------------------CH
Confidence 9999999999999888775532 33899999999995321 11 00
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.....++...+++++++||+++ .|+.++|.+|.+++...
T Consensus 127 --------~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 127 --------EEGKELAESWGAAFLESSAREN------------ENVEEAFELLIEEIEKV 165 (180)
T ss_pred --------HHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHh
Confidence 1145666777889999999999 99999999999877544
No 114
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=9.7e-25 Score=181.82 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=118.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+|+|++|||||||+++|.++.+.. ..+|.+..+..... ...+.+.+|||+|++.+...+..+++.+|++|+|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999998754 45666655433332 234689999999999998888888999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++.+|..+..|+..+... ...|+++|+||+|+..... .+++. ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~i~-------------------------~~- 125 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT-----AEEIT-------------------------RR- 125 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC-----HHHHH-------------------------HH-
Confidence 99999999999888877443 3459999999999953211 11110 00
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
-....++...++++++|||++| .|++++|++|.+
T Consensus 126 -------~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~~~~~i~~ 159 (160)
T cd04156 126 -------FKLKKYCSDRDWYVQPCSAVTG------------EGLAEAFRKLAS 159 (160)
T ss_pred -------cCCcccCCCCcEEEEecccccC------------CChHHHHHHHhc
Confidence 0012344445668999999999 999999999864
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.92 E-value=3.4e-24 Score=178.42 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=92.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+|+++|++|||||||+++|.+..+ ...+.+|.+...... . ...+.+.+|||||++.|..++..+++.++++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~--~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF--E--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE--E--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 456777877554322 2 23578999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc-----CCCeEEEEeeCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ-----KFEILLCIGNKVDLLP 166 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~-----~~~~iivvgnK~Dl~~ 166 (289)
|++++.+|..+..|+..+... ...|+++|+||+|+..
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 999999999998888877442 2349999999999964
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.92 E-value=2.4e-24 Score=183.53 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=119.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||++++..+.+.. +.+|.+..+..... . .+.+.+|||||++.|...+..+++++|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY--K--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE--C--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999988764 56777766543332 2 46899999999999988888889999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++++|..+..|+..+... ...|+++|+||+|+..... ..+..+.+
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l--------------------------- 141 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT-PAEISESL--------------------------- 141 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC-HHHHHHHh---------------------------
Confidence 9999999999888877766433 2359999999999854211 00111111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
....+...++++++|||++| .|++++|++|.+
T Consensus 142 -----------~~~~~~~~~~~~~~~SA~~g------------~gi~e~~~~l~~ 173 (174)
T cd04153 142 -----------GLTSIRDHTWHIQGCCALTG------------EGLPEGLDWIAS 173 (174)
T ss_pred -----------CcccccCCceEEEecccCCC------------CCHHHHHHHHhc
Confidence 11112335678999999999 999999999975
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.92 E-value=4.7e-24 Score=180.77 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=120.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
+|+++|++|||||||+++|.+. +...+.+|.+..... +... .+.+.+||++|++.++.++..|+++++++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTK--LRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEE--EEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999877 666778888865443 3333 4679999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++.+|+.+..|+..+... ...|+++|+||+|+....... +....+
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~-~i~~~~----------------------------- 125 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGA-DVIEYL----------------------------- 125 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH-HHHHhc-----------------------------
Confidence 99999999999999988654 345999999999995432110 111111
Q ss_pred CCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 208 EPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
....++...+ +.+++|||++| .-+-...|+.+.|+||++
T Consensus 126 --------~l~~~~~~~~~~~~~~~~Sa~~g------~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 126 --------SLEKLVNENKSLCHIEPCSAIEG------LGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred --------CcccccCCCCceEEEEEeEceeC------CCCccccCHHHHHHHHhc
Confidence 0334454443 46778999995 000011689999999975
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=1.5e-23 Score=174.50 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=118.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+++|++|||||||++++.+..+ ..+.+|.+.......+ . .+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEY--K--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEE--C--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 799999999999999999999884 4556677655543332 2 4679999999999999999899999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++++|..+..|+..+... ...|+++|+||+|+..... ..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-----~~~~----------------------------- 121 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS-----VSEL----------------------------- 121 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC-----HHHH-----------------------------
Confidence 99999999999888877553 2349999999999964321 1111
Q ss_pred CCcHHHHHHHHHH-HHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 208 EPSWEIRRSCLEW-CTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 208 ~~~~~~~~~~~~~-~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
.+..... +....++++++||++| .|++++|++|..
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~~~~~l~~ 157 (158)
T cd00878 122 ------IEKLGLEKILGRRWHIQPCSAVTG------------DGLDEGLDWLLQ 157 (158)
T ss_pred ------HHhhChhhccCCcEEEEEeeCCCC------------CCHHHHHHHHhh
Confidence 0011111 2234568999999999 999999999875
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=1.1e-23 Score=175.80 Aligned_cols=153 Identities=19% Similarity=0.176 Sum_probs=113.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
||+++|+++||||||++++..+.+. .+.+|.+..+... .. ..+.+.+|||||++.|+.++..+++.++++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETV--TY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEE--EE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6999999999999999999888775 3456666554432 22 34689999999999999988899999999999999
Q ss_pred CCCHhhHHHHHHHHHHh-hhc--CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSI-DLQ--KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i-~~~--~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++.++.....|+..+ +.. ...|+++|+||+|+..... ..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-----~~~i----------------------------- 121 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS-----EAEI----------------------------- 121 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC-----HHHH-----------------------------
Confidence 99999998777666544 322 2459999999999953211 1111
Q ss_pred CCcHHHHHH-HHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 208 EPSWEIRRS-CLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 208 ~~~~~~~~~-~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
.+. ........+++++++||+++ .|++++|++|++
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~ 157 (158)
T cd04151 122 ------SEKLGLSELKDRTWSIFKTSAIKG------------EGLDEGMDWLVN 157 (158)
T ss_pred ------HHHhCccccCCCcEEEEEeeccCC------------CCHHHHHHHHhc
Confidence 000 00111223457999999999 999999999975
No 120
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-25 Score=189.01 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=150.9
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
.+++..||++|+|..+|||+|+|+||+.+-|...+..|++.++....+......+.+.+|||+||+.|.++.+.|+++|.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 35677799999999999999999999999999999999999987777777777778899999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 124 ALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 124 ~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+.|+||+.+|..||+....|+..+...-.. |.++|-||+||+.+. ++
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds--------~~------------------------ 142 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS--------QM------------------------ 142 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh--------hc------------------------
Confidence 999999999999999999999999887555 899999999997532 22
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
..++ ++.+++..++.++-+|++.. .||..+|.+|++.+...+..
T Consensus 143 --~~~e--------vE~lak~l~~RlyRtSvked------------~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 143 --DKGE--------VEGLAKKLHKRLYRTSVKED------------FNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred --chHH--------HHHHHHHhhhhhhhhhhhhh------------hhhHHHHHHHHHHHHHHHHH
Confidence 2222 78889999999999999999 99999999999888766644
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=2e-23 Score=194.01 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=105.7
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC-------------cceEEEEEEEcCCchhh
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK-------------YYTADVSLWMAHLHEEF 111 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~l~I~Dt~G~e~~ 111 (289)
.....+||+|+|+.|||||||+++|.++.|...+.+|++..+....+... +..+.++||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45566999999999999999999999999988888999987754433321 35688999999999999
Q ss_pred hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC--------------CCeEEEEeeCCCCCC
Q 040295 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK--------------FEILLCIGNKVDLLP 166 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--------------~~~iivvgnK~Dl~~ 166 (289)
+.++..|+++++++|+|||++++.+|+.+..|+..+.... ..|++|||||+||..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999999999997652 238999999999954
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.91 E-value=1.8e-23 Score=179.73 Aligned_cols=114 Identities=21% Similarity=0.192 Sum_probs=93.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+++|++|||||||++++.++.+. .+.+|.+.......+ . ...+.+||+||++.+...+..++++++++|+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~--~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTI--G--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999988874 466666654433332 3 3578999999999998888889999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLP 166 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~ 166 (289)
|+|++++.+|+....|+..+... ...|+++|+||+|+..
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 99999999999888888877543 3359999999999954
No 123
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=6.8e-23 Score=176.19 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=119.8
Q ss_pred CCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC
Q 040295 72 VNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151 (289)
Q Consensus 72 ~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~ 151 (289)
+.|.+.+.+|++.++....+..++..+.+.||||+|+++|..++..++++||++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 46777889999999887777777778999999999999999999999999999999999999999999999999886553
Q ss_pred --CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE
Q 040295 152 --FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYI 229 (289)
Q Consensus 152 --~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (289)
..|+++||||+||... +.+ +.+ .+..++..+++.|+
T Consensus 83 ~~~~piilVgNK~DL~~~--------~~v--------------------------~~~--------e~~~~~~~~~~~~~ 120 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDL--------RKV--------------------------TYE--------EGMQKAQEYNTMFH 120 (176)
T ss_pred CCCCeEEEEEECcccccc--------cCC--------------------------CHH--------HHHHHHHHcCCEEE
Confidence 2388999999999532 112 111 26778888899999
Q ss_pred EeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 230 EACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 230 e~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
||||++| .||+++|++|++.+......
T Consensus 121 e~SAk~g------------~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 121 ETSAKAG------------HNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred EEECCCC------------CCHHHHHHHHHHHHHhcccc
Confidence 9999999 99999999999988554433
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.90 E-value=3.6e-23 Score=173.48 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=115.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNF------EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~------~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
+|+++|++|||||||++++.+... ...+.+|.+..+....+ + ...+.+|||||++.+...+..+++.+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV--G--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE--C--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 23345566655543333 2 4679999999999999888889999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|+|.++++++..+..|+..+.+. ...|+++|+||+|+...... +..+...
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~--~~~~~~~---------------------- 132 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSV--EEIKEVF---------------------- 132 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCH--HHHHHHh----------------------
Confidence 99999999999999999888877553 23489999999998543110 1111110
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
. . ..+.....+++++++||++| +|+++++++|+++
T Consensus 133 ---~--~--------~~~~~~~~~~~~~~~Sa~~g------------~gv~e~~~~l~~~ 167 (167)
T cd04160 133 ---Q--D--------KAEEIGRRDCLVLPVSALEG------------TGVREGIEWLVER 167 (167)
T ss_pred ---c--c--------ccccccCCceEEEEeeCCCC------------cCHHHHHHHHhcC
Confidence 0 0 00001123468999999999 9999999999763
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.89 E-value=1.6e-22 Score=166.03 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=119.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
.|+|+|++|||||||++++.+.++...+.+|.+..+.... .. .+.+.+||++|++.|...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVT--KG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEE--EC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3899999999999999999999998888888887665432 22 3679999999999999888899999999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
++++.++..+..|+..+... ...|+++|+||+|+....... +....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~----------------------------- 126 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD-ELIEQM----------------------------- 126 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH-HHHHHh-----------------------------
Confidence 99999999888777766432 234899999999986431100 000000
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
.........++++++||+++ .|+.+++++|++
T Consensus 127 ---------~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~ 158 (159)
T cd04159 127 ---------NLKSITDREVSCYSISCKEK------------TNIDIVLDWLIK 158 (159)
T ss_pred ---------CcccccCCceEEEEEEeccC------------CChHHHHHHHhh
Confidence 00111223467999999999 999999999975
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=2.2e-22 Score=173.34 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=92.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+++|.+|||||||++++.++.+. .+.+|.+.......+ . .+++.+||++|++.++.++..+++.++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAI--G--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34589999999999999999999988764 344555544333222 2 367899999999999988999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLL 165 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~ 165 (289)
+|+|++++.+|.....|+..+... ...|+++|+||+|+.
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 999999999999998888776432 345899999999985
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=9.1e-22 Score=166.99 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=111.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCCc------ceEEeeEEee--c---CcceEEEEEEEcCCchhhh
Q 040295 51 GILIIGSSNVGKRTILSRLLSVN-------FEDASDSSS------ELLVNGWTIN--T---KYYTADVSLWMAHLHEEFS 112 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~-------~~~~~~~t~------~~~~~~~~i~--~---~~~~~~l~I~Dt~G~e~~~ 112 (289)
+|+++|+++||||||+++|++.. +...+.++. +..+....+. . ++..+.+.+|||||++.|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998742 212222222 2233222111 1 4456789999999999998
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
.....+++.+|++|+|||+++..+++....|..... ...|+++|+||+|+.... . ...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~-----~-~~~-------------- 139 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSAD-----P-ERV-------------- 139 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCC-----H-HHH--------------
Confidence 888889999999999999998877777776654332 234789999999984311 0 111
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+++...++ +++++||++| .|++++|++|.+.+
T Consensus 140 ------------------------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 ------------------------KQQIEDVLGLDPSEAILVSAKTG------------LGVEDLLEAIVERI 176 (179)
T ss_pred ------------------------HHHHHHHhCCCcccEEEeeccCC------------CCHHHHHHHHHhhC
Confidence 3455555565 4899999999 99999999998865
No 128
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=170.60 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=135.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+|+|++|||||||+++|..+.+...+.+|.+..+...........+++.+|||+|+++|+.++..|+.+++++++||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999999889999888887777666655888999999999999999999999999999999
Q ss_pred eCCC-HhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLND-LSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~-~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++. ..+++....|...+..... .|+++||||+|+...........+... . ....
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~--------------------~--~~~~ 143 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLN--------------------R--EVVL 143 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhh--------------------c--Ccch
Confidence 9998 6666777799999988873 499999999999764322211111110 0 0000
Q ss_pred CCCcHHHHHHHHHHHHHc---CCeEEEeecC--CCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 207 EEPSWEIRRSCLEWCTEH---RIEYIEACAS--NVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~--~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. .....+... ...++++|++ ++ .++.++|..+...+....
T Consensus 144 ~--------~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 144 L--------VLAPKAVLPEVANPALLETSAKSLTG------------PNVNELFKELLRKLLEEI 188 (219)
T ss_pred h--------hhHhHHhhhhhcccceeEeecccCCC------------cCHHHHHHHHHHHHHHhh
Confidence 0 012222222 3348999999 98 999999999998886543
No 129
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-21 Score=162.19 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=141.3
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh-hccccccccC
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFED--ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF-SIRSLPISDQ 121 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~-~~~~~~~~~~ 121 (289)
.+.+.-||++||-.+||||+++.+++.++... .+.+|+...|....-...+..-.+.+|||+|.... ..+.++|++-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 34556899999999999999999999887543 46778877765544455666778999999997766 6677899999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC---eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~---~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
+||+|+||+..+++||+.+..+...|.+.+.+ ||++.|||+|+... +++
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p--------~~v-------------------- 136 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP--------REV-------------------- 136 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc--------hhc--------------------
Confidence 99999999999999999887666666555443 99999999999532 323
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCCCCCCCC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITEPS 278 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~ 278 (289)
..+ .|+.||....+..+|++|+++ ..+-+.|..|+.++.+. +++++
T Consensus 137 ------d~d--------~A~~Wa~rEkvkl~eVta~dR------------~sL~epf~~l~~rl~~p--------qskS~ 182 (198)
T KOG3883|consen 137 ------DMD--------VAQIWAKREKVKLWEVTAMDR------------PSLYEPFTYLASRLHQP--------QSKST 182 (198)
T ss_pred ------CHH--------HHHHHHhhhheeEEEEEeccc------------hhhhhHHHHHHHhccCC--------ccccc
Confidence 111 289999999999999999999 99999999999988776 45566
Q ss_pred CCcc
Q 040295 279 LPVK 282 (289)
Q Consensus 279 ~~~~ 282 (289)
+|-.
T Consensus 183 Fpl~ 186 (198)
T KOG3883|consen 183 FPLS 186 (198)
T ss_pred Ccch
Confidence 6655
No 130
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=3e-21 Score=160.47 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=102.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--CcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVN---FEDASDS--SSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~---~~~~~~~--t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
.|+++|++|||||||+++|.+.. +.....+ |....+....+.. ...+.+|||||++.|......+++++|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---GKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 58999999999999999998643 3322222 3333333333321 34799999999999976666778899999
Q ss_pred EEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|+|+++ +++++.+. .+...+.+|+++|+||+|+... ......
T Consensus 79 i~V~d~~~~~~~~~~~~~~----~~~~~~~~~~ilv~NK~Dl~~~-----~~~~~~------------------------ 125 (164)
T cd04171 79 LLVVAADEGIMPQTREHLE----ILELLGIKRGLVVLTKADLVDE-----DWLELV------------------------ 125 (164)
T ss_pred EEEEECCCCccHhHHHHHH----HHHHhCCCcEEEEEECccccCH-----HHHHHH------------------------
Confidence 99999987 55554443 1222233489999999999531 000111
Q ss_pred CCCCCCCcHHHHHHHHHHHHH---cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 203 LLGDEEPSWEIRRSCLEWCTE---HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~---~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
.....+++.. .+.+++++||+++ .|++++|..|.+
T Consensus 126 -----------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~ 163 (164)
T cd04171 126 -----------EEEIRELLAGTFLADAPIFPVSAVTG------------EGIEELKEYLDE 163 (164)
T ss_pred -----------HHHHHHHHHhcCcCCCcEEEEeCCCC------------cCHHHHHHHHhh
Confidence 1123344433 4578999999999 999999998864
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.87 E-value=4.7e-21 Score=161.73 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=91.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+|+|++|||||||++++.+..+. .+.+|.+..+..... . ...+.+||++|+..+...+..+++.++++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~--~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQS--D--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 3589999999999999999999988764 355666654443332 3 3578999999999888888888899999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLP 166 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~ 166 (289)
|||+++..+|.....|+..+... ...|+++++||+|+..
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 99999999999888777665432 2348999999999953
No 132
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.87 E-value=1.6e-21 Score=167.04 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=122.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+++|..|||||||++++..+.+. ...||.+........ . .+.+.+||.+|+..++.+++.|++.++++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~--~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY--K--GYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE--T--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee--C--cEEEEEEeccccccccccceeeccccceeE
Confidence 45689999999999999999999987653 366777766554433 3 467999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhh---cCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~---~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
||+|.++++.+......+..+-. ....|+++++||.|+..... ..+....+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l------------------------- 140 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS-EEEIKEYL------------------------- 140 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST-HHHHHHHT-------------------------
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch-hhHHHhhh-------------------------
Confidence 99999999999998877776633 24459999999999854321 11111111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
. ...+.....+.++.|||++| +|+.+.+++|.+.+
T Consensus 141 -~-----------l~~l~~~~~~~v~~~sa~~g------------~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 141 -G-----------LEKLKNKRPWSVFSCSAKTG------------EGVDEGLEWLIEQI 175 (175)
T ss_dssp -T-----------GGGTTSSSCEEEEEEBTTTT------------BTHHHHHHHHHHHH
T ss_pred -h-----------hhhcccCCceEEEeeeccCC------------cCHHHHHHHHHhcC
Confidence 0 01111234567899999999 99999999998764
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.87 E-value=5.2e-22 Score=162.76 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=99.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc-----hhhhccccccccCccEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH-----EEFSIRSLPISDQLTAL 125 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~-----e~~~~~~~~~~~~ad~v 125 (289)
||+++|++|||||||+++|.+..+. +.+|.+..+. ..+|||||+ +.|..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999988752 3344433221 168999998 34554443 47899999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|+|||++++.++.. ..|..... .|+++|+||+|+.+... .
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~~----~p~ilv~NK~Dl~~~~~-----~------------------------------ 106 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIFV----KPVIGLVTKIDLAEADV-----D------------------------------ 106 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhcc----CCeEEEEEeeccCCccc-----C------------------------------
Confidence 99999999998865 34544332 38888999999953110 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHH
Q 040295 206 DEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALS 259 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~ 259 (289)
.+.+.+++...+. +++++||+++ .|++++|++|.
T Consensus 107 --------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~ 141 (142)
T TIGR02528 107 --------IERAKELLETAGAEPIFEISSVDE------------QGLEALVDYLN 141 (142)
T ss_pred --------HHHHHHHHHHcCCCcEEEEecCCC------------CCHHHHHHHHh
Confidence 1125677777776 7999999999 99999999874
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=4.7e-21 Score=160.79 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=105.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC-CC-CCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc---------cccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA-SD-SSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR---------SLPI 118 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~-~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~---------~~~~ 118 (289)
.+|+++|++|||||||+++|.+..+... +. .|...... .+ ......+.+|||||+...... ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVG--HF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEE--EE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence 3799999999999999999999886432 11 12222111 11 122468999999998422110 0011
Q ss_pred ccCccEEEEEEeCCCHhhH--HHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 119 SDQLTALVMVFNLNDLSTL--DALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~--~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
...+|++|+|+|++++.++ +....|+..++... ..|+++|+||+|+... +.+
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~--------~~~----------------- 131 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF--------EDL----------------- 131 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch--------hhH-----------------
Confidence 1236899999999987654 66677888886543 4589999999999532 111
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.. ...+....+.++++|||++| .|++++|++|.++++
T Consensus 132 ------------------~~-~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~ 168 (168)
T cd01897 132 ------------------SE-IEEEEELEGEEVLKISTLTE------------EGVDEVKNKACELLL 168 (168)
T ss_pred ------------------HH-HHHhhhhccCceEEEEeccc------------CCHHHHHHHHHHHhC
Confidence 00 23445555678999999999 999999999998764
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=7.9e-21 Score=159.52 Aligned_cols=153 Identities=16% Similarity=0.090 Sum_probs=105.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCC-C-CCCcceEEeeEEeecCcceEEEEEEEcCCch----hhhcccccc---ccC
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDA-S-DSSSELLVNGWTINTKYYTADVSLWMAHLHE----EFSIRSLPI---SDQ 121 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~-~-~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e----~~~~~~~~~---~~~ 121 (289)
.|+|+|++|||||||++++.+...... . ..|....... +...+ ...+.+|||||+. .+..+...+ ++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~--~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGV--VRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceE--EEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 589999999999999999997654211 1 1122111111 12222 1469999999963 222233333 345
Q ss_pred ccEEEEEEeCCCH-hhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 122 LTALVMVFNLNDL-STLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 122 ad~vIlV~Dv~~~-~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
+|++++|+|++++ .+++.+..|+..+.... ..|+++|+||+|+.+.... .
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-----~-------------------- 133 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-----F-------------------- 133 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-----H--------------------
Confidence 9999999999999 89999999988886553 3588999999999642110 0
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHH-cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTE-HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.....+... .+.+++++||+++ .|++++|++|.+.
T Consensus 134 ------------------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~i~~~ 169 (170)
T cd01898 134 ------------------ELLKELLKELWGKPVFPISALTG------------EGLDELLRKLAEL 169 (170)
T ss_pred ------------------HHHHHHHhhCCCCCEEEEecCCC------------CCHHHHHHHHHhh
Confidence 113344444 3678999999999 9999999999864
No 136
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.86 E-value=1.6e-20 Score=156.80 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=130.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
.+..++|+|+|..|+||||++++|.+.. .+...+|.+++..+... + .+.+.+||.+||..++.+|+.|+..+||+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~--~--~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY--K--GYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe--c--ceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 3446899999999999999999998887 46677888877765543 3 46799999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHh---hhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSI---DLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i---~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|||++++..|+.....+..+ .+..+.|+++++||.|+.+.-. .+.-..+
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--~~~i~~~------------------------ 141 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--LEEISKA------------------------ 141 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC--HHHHHHh------------------------
Confidence 9999999999999887666555 2223458999999999952211 1111111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
-...+++++++++++-|||.+| +++.+-+++|+..+..
T Consensus 142 ------------~~L~~l~ks~~~~l~~cs~~tg------------e~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 142 ------------LDLEELAKSHHWRLVKCSAVTG------------EDLLEGIDWLCDDLMS 179 (185)
T ss_pred ------------hCHHHhccccCceEEEEecccc------------ccHHHHHHHHHHHHHH
Confidence 1156777889999999999999 9999999999987755
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.86 E-value=2.2e-20 Score=151.92 Aligned_cols=155 Identities=18% Similarity=0.214 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|.+|+|||||++++.+..+...+.++.+..+....+...+..+.+.+||+||+..+..++..+.+.++++++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999999976667777777765554555555578999999999999888888888999999999
Q ss_pred eCCCH-hhHHHHH-HHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 130 NLNDL-STLDALK-HWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 130 Dv~~~-~S~~~l~-~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|+... .++.... .|...+.... ..|+++|+||+|+.... ...+.
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~~~~~--------------------------- 129 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----LKTHV--------------------------- 129 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----hhHHH---------------------------
Confidence 99877 7777665 6666664443 34899999999995421 01111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHH
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALS 259 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~ 259 (289)
...+....+.+++++||+++ .|+.++|++|.
T Consensus 130 -----------~~~~~~~~~~~~~~~sa~~~------------~gv~~~~~~l~ 160 (161)
T TIGR00231 130 -----------AFLFAKLNGEPIIPLSAETG------------KNIDSAFKIVE 160 (161)
T ss_pred -----------HHHHhhccCCceEEeecCCC------------CCHHHHHHHhh
Confidence 33444445567999999999 99999999873
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.84 E-value=2.9e-20 Score=162.00 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=109.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCch---------hhhccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLHE---------EFSIRS 115 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e---------~~~~~~ 115 (289)
.+.++|+|+|++|||||||++++.+..+... ..+|.........+ .+. ..+.+|||||.. .|....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL--PDG-REVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe--cCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 4458999999999999999999999875322 22333333322222 221 268999999972 222211
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
..+..+|++++|+|.+++.++..+..|...+.... ..|+++|+||+|+.+. ...
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~--------~~~--------------- 171 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD--------EEL--------------- 171 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh--------HHH---------------
Confidence 23567999999999999999988887777776543 3489999999999542 111
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+....+.+++++||+++ .|+++++.+|.+++
T Consensus 172 ------------------------~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~L~~~~ 204 (204)
T cd01878 172 ------------------------EERLEAGRPDAVFISAKTG------------EGLDELLEAIEELL 204 (204)
T ss_pred ------------------------HHHhhcCCCceEEEEcCCC------------CCHHHHHHHHHhhC
Confidence 1334445678999999999 99999999998754
No 139
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.83 E-value=4e-20 Score=147.11 Aligned_cols=113 Identities=25% Similarity=0.429 Sum_probs=82.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFE--DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
||+|+|++|||||||+++|.+..+. .....+.+..+.............+.+||++|++.+...+...+..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999876 11222222233222333333444599999999998888777778999999999
Q ss_pred EeCCCHhhHHHHHH---HHHHhhhcCC-CeEEEEeeCCC
Q 040295 129 FNLNDLSTLDALKH---WVPSIDLQKF-EILLCIGNKVD 163 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~---~~~~i~~~~~-~~iivvgnK~D 163 (289)
||++++.||+.+.. |+..+..... .|++|||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999854 5666655333 49999999998
No 140
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.83 E-value=4.6e-20 Score=152.90 Aligned_cols=166 Identities=16% Similarity=0.269 Sum_probs=147.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||.++|++.+|||||+-++.++++.+.+..+.|..+...++...+..+.+.|||.+|+++|....+...+++-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 37999999999999999999999999888999999999888888999999999999999999999888889999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
||++.+.++..+..|+...+..+.. .-|+||+|.|+.-.- +.
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l-------------------------------------p~ 142 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL-------------------------------------PP 142 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC-------------------------------------CH
Confidence 9999999999999999999887665 334589999986321 22
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+-+|.+.++++..++-.+.++|+||+..+ .||..+|+.+.+.+.
T Consensus 143 e~Q~~I~~qar~YAk~mnAsL~F~Sts~s------------INv~KIFK~vlAklF 186 (205)
T KOG1673|consen 143 ELQETISRQARKYAKVMNASLFFCSTSHS------------INVQKIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeecccc------------ccHHHHHHHHHHHHh
Confidence 24667778899999999999999999999 999999998887764
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=2.5e-19 Score=149.92 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=79.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC-cceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK-YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
.|+|+|++|||||||+++|....+......+....+....+... +....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 59999999999999999999988765433333323222222222 13467899999999998887777889999999999
Q ss_pred eCCCH---hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 130 NLNDL---STLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 130 Dv~~~---~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|+++. ++++.+. .+.. ...|+++|+||+|+..
T Consensus 82 d~~~~~~~~~~~~~~----~~~~-~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 82 AADDGVMPQTIEAIK----LAKA-ANVPFIVALNKIDKPN 116 (168)
T ss_pred ECCCCccHHHHHHHH----HHHH-cCCCEEEEEEceeccc
Confidence 99874 4443332 2222 3347899999999953
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.82 E-value=3.5e-19 Score=142.73 Aligned_cols=152 Identities=21% Similarity=0.353 Sum_probs=115.2
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCC
Q 040295 54 IIGSSNVGKRTILSRLLSVNF-EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLN 132 (289)
Q Consensus 54 ilG~~gvGKSSLi~rl~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~ 132 (289)
|+|++|+|||||++++.+... .....++. ..+.............+.+||++|+..+......+++.++++++|||++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999886 44455555 5665566555556788999999999988777777889999999999999
Q ss_pred CHhhHHHHHHHH--HH-hhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCC
Q 040295 133 DLSTLDALKHWV--PS-IDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEP 209 (289)
Q Consensus 133 ~~~S~~~l~~~~--~~-i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (289)
++.++..+..|. .. .......|+++|+||+|+..... ....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~-----~~~~------------------------------- 123 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV-----VSEE------------------------------- 123 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc-----hHHH-------------------------------
Confidence 999999998872 22 22233459999999999964321 0000
Q ss_pred cHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHH
Q 040295 210 SWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALS 259 (289)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~ 259 (289)
..........+++++++|++++ .|+.+++++|.
T Consensus 124 -----~~~~~~~~~~~~~~~~~s~~~~------------~~i~~~~~~l~ 156 (157)
T cd00882 124 -----ELAEQLAKELGVPYFETSAKTG------------ENVEELFEELA 156 (157)
T ss_pred -----HHHHHHHhhcCCcEEEEecCCC------------CChHHHHHHHh
Confidence 0123445556788999999999 99999999875
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=3.1e-19 Score=154.70 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=81.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccc
Q 040295 51 GILIIGSSNVGKRTILSRLLS--VNFEDAS------------DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSL 116 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~ 116 (289)
+|+++|.++||||||+++|+. +.|...+ ..+.+..+.............+.+|||||++.|.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 4554332 11233333222223334457899999999999998888
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.+++.+|++++|||+++. .+.....|+..+... ..|+++|+||+|+..
T Consensus 84 ~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~-~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 84 RVLSMVDGVLLLVDASEG-PMPQTRFVLKKALEL-GLKPIVVINKIDRPD 131 (194)
T ss_pred HHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHc-CCCEEEEEECCCCCC
Confidence 999999999999999874 233333444444333 347888999999953
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=3.1e-19 Score=147.64 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc------ccccc--cCccEE
Q 040295 54 IIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR------SLPIS--DQLTAL 125 (289)
Q Consensus 54 ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~------~~~~~--~~ad~v 125 (289)
|+|.+|||||||++++.+..+.....++.+.......+..++ ..+.+|||||++.+... ...++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998864433333333333333333343 46899999999876542 34445 489999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|+|+|.++++... .|...+... ..|+++|+||+|+..... +
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~-~~~~iiv~NK~Dl~~~~~--------~--------------------------- 119 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL-GLPVVVALNMIDEAEKRG--------I--------------------------- 119 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc-CCCEEEEEehhhhccccc--------c---------------------------
Confidence 9999999865433 344444433 358999999999954211 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
......+....+++++++||+++ .|+.+++..|...
T Consensus 120 --------~~~~~~~~~~~~~~~~~iSa~~~------------~~~~~l~~~l~~~ 155 (158)
T cd01879 120 --------KIDLDKLSELLGVPVVPTSARKG------------EGIDELKDAIAEL 155 (158)
T ss_pred --------hhhHHHHHHhhCCCeEEEEccCC------------CCHHHHHHHHHHH
Confidence 00134666667889999999999 9999999999874
No 145
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.3e-19 Score=150.49 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
.+|+++|-.++||||++++|..+++... .||+|.....+.+. .+.+.+||.+||++++.++++|+++.+++|||.
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv 92 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV 92 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence 6899999999999999999999987544 78998776655443 578999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|.+|++.+..++.-+..+-... ..|+++.+||.|+....+ ..+....+
T Consensus 93 DS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-~~ei~~~L---------------------------- 143 (181)
T KOG0070|consen 93 DSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-AAEITNKL---------------------------- 143 (181)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC-HHHHHhHh----------------------------
Confidence 9999999999987666664443 349999999999954322 11222222
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
...-.......+-.|||.+| .|+.+.+++|...+..
T Consensus 144 ----------~l~~l~~~~w~iq~~~a~~G------------~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 144 ----------GLHSLRSRNWHIQSTCAISG------------EGLYEGLDWLSNNLKK 179 (181)
T ss_pred ----------hhhccCCCCcEEeecccccc------------ccHHHHHHHHHHHHhc
Confidence 11111113345667999999 9999999999887643
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=8.9e-19 Score=165.98 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=107.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCc---------hhhhcccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLH---------EEFSIRSL 116 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~---------e~~~~~~~ 116 (289)
..++|+++|.+|||||||+|+|++.++... ..+|.........+. ++ ..+.+|||+|. +.|....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~--~~i~l~DT~G~~~~l~~~lie~f~~tl- 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DG--GEVLLTDTVGFIRDLPHELVAAFRATL- 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CC--ceEEEEecCcccccCCHHHHHHHHHHH-
Confidence 448999999999999999999999875322 234444433333332 22 36899999997 3344322
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
..++++|++|+|+|++++.+++.+..|...+.... ..|+++|+||+|+.+. ..+
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--------~~v---------------- 319 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--------PRI---------------- 319 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--------HhH----------------
Confidence 34778999999999999999888877766665543 4589999999999531 111
Q ss_pred CCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
..+. ....+++++||+++ .|++++++.|...
T Consensus 320 -----------------------~~~~-~~~~~~i~iSAktg------------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 320 -----------------------ERLE-EGYPEAVFVSAKTG------------EGLDLLLEAIAER 350 (351)
T ss_pred -----------------------HHHH-hCCCCEEEEEccCC------------CCHHHHHHHHHhh
Confidence 1111 12246899999999 9999999998764
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=3.9e-19 Score=154.33 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=99.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCC-----------chhhhccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL-----------HEEFSIRS 115 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G-----------~e~~~~~~ 115 (289)
...++|+++|++|||||||+++|.+..+.....++. .+....+... .+.+||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 345899999999999999999999888654443433 3322232222 589999999 67777766
Q ss_pred ccccc----CccEEEEEEeCCCHhhH-HH---------HHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhc
Q 040295 116 LPISD----QLTALVMVFNLNDLSTL-DA---------LKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKR 181 (289)
Q Consensus 116 ~~~~~----~ad~vIlV~Dv~~~~S~-~~---------l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~ 181 (289)
..+++ .++++++|+|.+....+ +. -..+...+.. ...|+++|+||+|+.... ...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~p~iiv~NK~Dl~~~~-------~~~--- 149 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LGIPPIVAVNKMDKIKNR-------DEV--- 149 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cCCCeEEEEECccccCcH-------HHH---
Confidence 66654 34677788876543221 00 0111222222 345889999999995321 111
Q ss_pred ccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---------eEEEeecCCCcccccccCCCCchhHH
Q 040295 182 EESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---------EYIEACASNVDFDKCLSIDGDSQGVE 252 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ie~Sa~~~~~~~~~~~~~~~~~i~ 252 (289)
+.+++...++ +++++||++| |++
T Consensus 150 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-------------gi~ 181 (201)
T PRK04213 150 -----------------------------------LDEIAERLGLYPPWRQWQDIIAPISAKKG-------------GIE 181 (201)
T ss_pred -----------------------------------HHHHHHHhcCCccccccCCcEEEEecccC-------------CHH
Confidence 3444444443 5799999985 899
Q ss_pred HHHHHHHHhccc
Q 040295 253 RLYGALSAHMWP 264 (289)
Q Consensus 253 ~l~~~L~~~~~~ 264 (289)
++|++|...+.+
T Consensus 182 ~l~~~l~~~~~~ 193 (201)
T PRK04213 182 ELKEAIRKRLHE 193 (201)
T ss_pred HHHHHHHHhhcC
Confidence 999999987643
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=2.6e-18 Score=157.08 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=105.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh-c-------ccccccc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS-I-------RSLPISD 120 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~-~-------~~~~~~~ 120 (289)
+|+++|.+|||||||+|+|++.++... ...|+.......... . ..++.+|||||..... . ....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~--~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-G--ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-C--CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 699999999999999999999876432 222333222222222 2 2468999999975321 1 1234578
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
.+|++++|+|+++..+++ ..++..+... ..|+++|+||+|+... ..+
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~-~~p~ilV~NK~Dl~~~--------~~~---------------------- 125 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL-KRPVVLTRNKLDNKFK--------DKL---------------------- 125 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhc-CCCEEEEEECeeCCCH--------HHH----------------------
Confidence 899999999999877764 3344444443 3489999999999531 111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
......++...++ +++++||++| .|++++++.|.+.+.+..
T Consensus 126 -------------~~~~~~~~~~~~~~~v~~iSA~~g------------~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 126 -------------LPLIDKYAILEDFKDIVPISALTG------------DNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred -------------HHHHHHHHhhcCCCceEEEecCCC------------CCHHHHHHHHHHhCCCCC
Confidence 1114455555565 7999999999 999999999998765443
No 149
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=1.4e-18 Score=150.32 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=103.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC----CCCC---C--CCCCcceEEeeEEee----------cCcceEEEEEEEcCCchh
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV----NFED---A--SDSSSELLVNGWTIN----------TKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~----~~~~---~--~~~t~~~~~~~~~i~----------~~~~~~~l~I~Dt~G~e~ 110 (289)
++|+++|++|+|||||+++|+.. .+.. . ...|.+..+....+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 1111 1 123444444444443 123356899999999976
Q ss_pred hhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcc
Q 040295 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDF 190 (289)
Q Consensus 111 ~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~ 190 (289)
+........+.+|++++|+|+++.........|.. ... ...|+++|+||+|+.... .+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~------~~~~------------ 140 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-GEI-LCKKLIVVLNKIDLIPEE------ERER------------ 140 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-HHH-cCCCEEEEEECcccCCHH------HHHH------------
Confidence 53322233456899999999987544443333321 122 234888999999996421 1110
Q ss_pred cCCCCCcccCCCCCCCCCCcHHHHHHHHHHHH---HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 191 CQSGISETEGSSLLGDEEPSWEIRRSCLEWCT---EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
...+.++....... ..+++++++||+++ .|+++++++|...+.+..
T Consensus 141 ------------------~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g------------~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 141 ------------------KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPG------------GGEAELGKDLNNLIVLPL 189 (192)
T ss_pred ------------------HHHHHHHHHHHHHHhcCcCCCCEEEEeccCC------------CCHHHHHHHHHhcccccc
Confidence 00011111111111 23578999999999 999999999999886653
No 150
>PRK15494 era GTPase Era; Provisional
Probab=99.80 E-value=1.4e-18 Score=164.00 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=108.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcceEEeeEEeecCcceEEEEEEEcCCch-hhhcccc-------
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLHE-EFSIRSL------- 116 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e-~~~~~~~------- 116 (289)
+.++|+++|++|||||||+++|++..+... ...|.. .....+..++ ..+.+|||||+. .+..+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~--~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRS--IITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccC--cEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 345999999999999999999999887421 122221 1122223332 468999999984 3332221
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
..++.+|++|+|+|.++ +|..+. .|+..++..+. |+|+|+||+|+... ...
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~~~-p~IlViNKiDl~~~------~~~------------------- 178 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSLNI-VPIFLLNKIDIESK------YLN------------------- 178 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhcCC-CEEEEEEhhcCccc------cHH-------------------
Confidence 23678999999999765 455554 45566655544 45678999998431 001
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCCC
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDK 273 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~ 273 (289)
.+.+++...+ .+++++||++| .|++++|++|...+.++--+-..+.
T Consensus 179 --------------------~~~~~l~~~~~~~~i~~iSAktg------------~gv~eL~~~L~~~l~~~~~~~~~~~ 226 (339)
T PRK15494 179 --------------------DIKAFLTENHPDSLLFPISALSG------------KNIDGLLEYITSKAKISPWLYAEDD 226 (339)
T ss_pred --------------------HHHHHHHhcCCCcEEEEEeccCc------------cCHHHHHHHHHHhCCCCCCCCCCCC
Confidence 1344554443 47999999999 9999999999997766654444443
Q ss_pred CC
Q 040295 274 IT 275 (289)
Q Consensus 274 ~~ 275 (289)
.|
T Consensus 227 ~t 228 (339)
T PRK15494 227 IT 228 (339)
T ss_pred CC
Confidence 33
No 151
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.79 E-value=2e-18 Score=146.69 Aligned_cols=170 Identities=18% Similarity=0.114 Sum_probs=107.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCc----------------ceEEeeEEeecCcceEEEEEEEcCCchhhhcc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSS----------------ELLVNGWTINTKYYTADVSLWMAHLHEEFSIR 114 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~----------------~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~ 114 (289)
+|+|+|.+|+|||||++.+++.........+. ........+.. ....+.+|||||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999887654331111 11111111111 2457999999999988877
Q ss_pred ccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 115 SLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 115 ~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
...+++.+|++++|+|++++.+.... .++..+.. ...|+++|+||+|+....... ...+++..... +.|
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-~~~~i~iv~nK~D~~~~~~~~-~~~~~~~~~~~--------~~~ 147 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-GGLPIIVAINKIDRVGEEDLE-EVLREIKELLG--------LIG 147 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-CCCCeEEEEECCCCcchhcHH-HHHHHHHHHHc--------ccc
Confidence 77888999999999999876655433 33444443 345899999999997421100 00011100000 000
Q ss_pred CCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
+. .. .+..+......+++++||+++ .|+++++.+|.+.+
T Consensus 148 ~~---------~~--------~~~~~~~~~~~~v~~~Sa~~g------------~gi~~l~~~l~~~l 186 (189)
T cd00881 148 FI---------ST--------KEEGTRNGLLVPIVPGSALTG------------IGVEELLEAIVEHL 186 (189)
T ss_pred cc---------ch--------hhhhcccCCcceEEEEecccC------------cCHHHHHHHHHhhC
Confidence 00 00 011122234578999999999 99999999999876
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.79 E-value=2.7e-18 Score=141.21 Aligned_cols=147 Identities=19% Similarity=0.137 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc--------ccccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR--------SLPIS 119 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~--------~~~~~ 119 (289)
+++|+++|++|+|||||++++.+..... ...++....+....+... ...+.+|||||...+... ....+
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 4799999999999999999999876421 111222222222233323 356899999997654321 12346
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
..+|++++|+|++++.+......|.. ....|+++|+||+|+....
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~------------------------------- 123 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDS------------------------------- 123 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcc-------------------------------
Confidence 78999999999998888877765443 3345899999999995321
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
. . .....+.+++++||+++ .|+++++++|...+
T Consensus 124 --------~--------~--~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~~ 156 (157)
T cd04164 124 --------E--------L--LSLLAGKPIIAISAKTG------------EGLDELKEALLELA 156 (157)
T ss_pred --------c--------c--ccccCCCceEEEECCCC------------CCHHHHHHHHHHhh
Confidence 0 1 22334568999999999 99999999998754
No 153
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.9e-18 Score=161.43 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=110.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC-CcceEEeeEEeecCcceEEEEEEEcCCchh----hhcccc---cccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEE----FSIRSL---PISD 120 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~-t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----~~~~~~---~~~~ 120 (289)
..|+|+|.+|||||||++++.+..... .+.. |.........+. + ...+.+||+||.-. ...+.. .+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~--~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-D--YKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-C--CcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 569999999999999999999865321 2222 222222222221 2 23589999998631 111222 3456
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
.++++|+|+|+++.++++.+..|...+..+. ..|+++|+||+|+.+... ...
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----~~~-------------------- 291 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE----ERE-------------------- 291 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh----HHH--------------------
Confidence 7999999999998889999999999887653 358999999999964210 000
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.....++...+++++++||+++ +|+++++++|.+.+..
T Consensus 292 ------------------~~~~~~~~~~~~~i~~iSAktg------------~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 292 ------------------KRAALELAALGGPVFLISAVTG------------EGLDELLRALWELLEE 329 (335)
T ss_pred ------------------HHHHHHHHhcCCCEEEEEcCCC------------CCHHHHHHHHHHHHHh
Confidence 1134455566788999999999 9999999999887643
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.78 E-value=2.9e-18 Score=166.93 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=110.7
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc--------c
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFE--DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR--------S 115 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~--------~ 115 (289)
...++||+++|++|||||||+|+|++..+. ..+ ++.+.++....+..++ ..+.+|||||+..+... .
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~ 276 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKS 276 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHH
Confidence 345699999999999999999999987642 223 2333344444444444 45789999998654322 2
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
..+++.+|++|+|||++++.+++.. |+..+... ..|+|+|+||+|+...
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~-~~piIlV~NK~Dl~~~---------------------------- 325 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS-KKPFILVLNKIDLKIN---------------------------- 325 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC-CCCEEEEEECccCCCc----------------------------
Confidence 3567899999999999999888776 77766543 3488999999999421
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ ...++...+++++++||++ .||.++|+.|.+.+...
T Consensus 326 ------------~--------~~~~~~~~~~~~~~vSak~-------------~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 326 ------------S--------LEFFVSSKVLNSSNLSAKQ-------------LKIKALVDLLTQKINAF 362 (442)
T ss_pred ------------c--------hhhhhhhcCCceEEEEEec-------------CCHHHHHHHHHHHHHHH
Confidence 0 2344556678899999997 48888888888876543
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.1e-18 Score=169.45 Aligned_cols=159 Identities=15% Similarity=0.092 Sum_probs=107.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCc----------hhhhccc-
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLH----------EEFSIRS- 115 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~----------e~~~~~~- 115 (289)
..+||+|+|.+|||||||+++|++.++. ....++.+.+.....+..++. .+.+|||||. +.|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999998753 222223333333333333433 4679999995 4444332
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
..+++.+|++|+|||++++.+++.+. ++..+.. ...|+|+|+||+|+.... ..+.+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-~~~piIiV~NK~Dl~~~~-----~~~~~----------------- 343 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-AGRALVLAFNKWDLVDED-----RRYYL----------------- 343 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-cCCCEEEEEECcccCChh-----HHHHH-----------------
Confidence 23578999999999999998888775 4444443 345899999999996421 11111
Q ss_pred CcccCCCCCCCCCCcHHHHHHH-HHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSC-LEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+ ..+.....++++++||++| .||+++|+.+.+.+
T Consensus 344 ------------------~~~i~~~l~~~~~~~~~~~SAk~g------------~gv~~lf~~i~~~~ 381 (472)
T PRK03003 344 ------------------EREIDRELAQVPWAPRVNISAKTG------------RAVDKLVPALETAL 381 (472)
T ss_pred ------------------HHHHHHhcccCCCCCEEEEECCCC------------CCHHHHHHHHHHHH
Confidence 0011 2223223468999999999 99999999998755
No 156
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.78 E-value=7.9e-21 Score=161.61 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=140.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEee-cCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTIN-TKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~-~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
+..+|++|+|.-|+|||++++|++...|...|..|++.++.-.... +++..+++++||.+||++|-.+...|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 5568999999999999999999999999988999999987433333 344557789999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhc-----CCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQ-----KFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~-----~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
++|||++...+|+....|.+++... +.| |+++.+||||..+.... +.
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~--~~------------------------- 155 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN--EA------------------------- 155 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh--hh-------------------------
Confidence 9999999999999999999988543 223 89999999999643210 00
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCe-EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRIE-YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
-+...++++++|+. ++|+|+|.+ .+++|.-..|++.++-+-
T Consensus 156 --------------~~~~d~f~kengf~gwtets~Ken------------kni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 156 --------------TRQFDNFKKENGFEGWTETSAKEN------------KNIPEAQRELVEKILVND 197 (229)
T ss_pred --------------HHHHHHHHhccCccceeeeccccc------------cChhHHHHHHHHHHHhhc
Confidence 12267999999995 999999999 999999999999887664
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=2.4e-18 Score=144.77 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCC-CCCcceEEeeEEeecCcceEEEEEEEcCCchh----hhccc---cccccCccE
Q 040295 54 IIGSSNVGKRTILSRLLSVNFE-DAS-DSSSELLVNGWTINTKYYTADVSLWMAHLHEE----FSIRS---LPISDQLTA 124 (289)
Q Consensus 54 ilG~~gvGKSSLi~rl~~~~~~-~~~-~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----~~~~~---~~~~~~ad~ 124 (289)
|+|++|||||||++++.+.++. ..+ ..|....... +.... ...+.+|||||... ...+. ..+++.+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGV--VEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceE--EEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 5899999999999999998742 122 1222222222 22220 34689999999732 22222 234678999
Q ss_pred EEEEEeCCCH------hhHHHHHHHHHHhhhc---------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 125 LVMVFNLNDL------STLDALKHWVPSIDLQ---------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 125 vIlV~Dv~~~------~S~~~l~~~~~~i~~~---------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
+++|+|.+++ .+++.+..|...+... ...|+++|+||+|+... +..
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--------~~~----------- 138 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--------EEL----------- 138 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--------hHH-----------
Confidence 9999999988 5888888888777543 24589999999999632 111
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.. .....++...+.+++++||+++ .|++++++.++..
T Consensus 139 ---------------------~~--~~~~~~~~~~~~~~~~~Sa~~~------------~gl~~l~~~l~~~ 175 (176)
T cd01881 139 ---------------------EE--ELVRELALEEGAEVVPISAKTE------------EGLDELIRAIYEL 175 (176)
T ss_pred ---------------------HH--HHHHHHhcCCCCCEEEEehhhh------------cCHHHHHHHHHhh
Confidence 00 0022344445677999999999 9999999999764
No 158
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.8e-19 Score=150.65 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=141.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+|++++|+.|.|||++++|++.++|...+.+|++....+.....+...+.+..|||+|+|.+..+...|+-++.++|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47899999999999999999999999999999999999877766666557999999999999999999888888999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
+||++..-++.++.+|..++.+-..+ ||+++|||.|.-. +++ .
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~---------r~~---------------------------k 132 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA---------RKV---------------------------K 132 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc---------ccc---------------------------c
Confidence 99999999999999999988666555 9999999999943 211 0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~ 269 (289)
.+...+-+..++.|+|.||+++ .|.++-|.+|.+.+...-.++
T Consensus 133 --------~k~v~~~rkknl~y~~iSaksn------------~NfekPFl~LarKl~G~p~Le 175 (216)
T KOG0096|consen 133 --------AKPVSFHRKKNLQYYEISAKSN------------YNFERPFLWLARKLTGDPSLE 175 (216)
T ss_pred --------cccceeeecccceeEEeecccc------------cccccchHHHhhhhcCCCCeE
Confidence 0134566667899999999999 999999999999886654443
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.77 E-value=1.9e-18 Score=145.74 Aligned_cols=140 Identities=16% Similarity=0.112 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCch-----hhhccccccccCccEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE-----EFSIRSLPISDQLTAL 125 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e-----~~~~~~~~~~~~ad~v 125 (289)
||+++|.+|||||||++++.+.... ...+.+..+ ... .+|||||+. .++.+. ..++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~v~~-----~~~------~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQAVEF-----NDK------GDIDTPGEYFSHPRWYHALI-TTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceEEEE-----CCC------CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence 7999999999999999998754321 122332222 111 269999972 222222 336889999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
++|+|.++..++ +..|+..+. ...|+++++||+|+... + .
T Consensus 69 l~v~d~~~~~s~--~~~~~~~~~--~~~~ii~v~nK~Dl~~~-----~-~------------------------------ 108 (158)
T PRK15467 69 IYVHGANDPESR--LPAGLLDIG--VSKRQIAVISKTDMPDA-----D-V------------------------------ 108 (158)
T ss_pred EEEEeCCCcccc--cCHHHHhcc--CCCCeEEEEEccccCcc-----c-H------------------------------
Confidence 999999988776 334555542 24478999999998421 0 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCC--eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 206 DEEPSWEIRRSCLEWCTEHRI--EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~--~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..+.+++...++ +++++||+++ .|++++|++|.+.+...
T Consensus 109 ---------~~~~~~~~~~~~~~p~~~~Sa~~g------------~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 109 ---------AATRKLLLETGFEEPIFELNSHDP------------QSVQQLVDYLASLTKQE 149 (158)
T ss_pred ---------HHHHHHHHHcCCCCCEEEEECCCc------------cCHHHHHHHHHHhchhh
Confidence 115677777775 8999999999 99999999998866444
No 160
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.77 E-value=1.1e-17 Score=144.06 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=105.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc----------hhhhcccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH----------EEFSIRSL 116 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~----------e~~~~~~~ 116 (289)
...++|+|+|++|||||||+++|.+..+...+.++.+.+........ ...+.+|||||. +.+..+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 35689999999999999999999998765555555543321111111 257999999994 44444444
Q ss_pred ccccC---ccEEEEEEeCCCHhhHHH--HHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCccc
Q 040295 117 PISDQ---LTALVMVFNLNDLSTLDA--LKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC 191 (289)
Q Consensus 117 ~~~~~---ad~vIlV~Dv~~~~S~~~--l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~ 191 (289)
.+++. ++++++|+|.+++.+... +..|+ .. ...|+++++||+|+.... ..+.+
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~-~~~~~iiv~nK~Dl~~~~-----~~~~~------------- 156 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE-YGIPVLIVLTKADKLKKG-----ERKKQ------------- 156 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH-cCCcEEEEEECcccCCHH-----HHHHH-------------
Confidence 55544 468889999887644433 22333 22 234788999999996431 11111
Q ss_pred CCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 192 QSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
...+..+......+++++||+++ .|++++++.|.+.+.+
T Consensus 157 ----------------------~~~i~~~l~~~~~~~~~~Sa~~~------------~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 157 ----------------------LKKVRKALKFGDDEVILFSSLKK------------QGIDELRAAIAKWLAE 195 (196)
T ss_pred ----------------------HHHHHHHHHhcCCceEEEEcCCC------------CCHHHHHHHHHHHhcC
Confidence 11134444444678999999999 9999999999887654
No 161
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=1.2e-17 Score=157.10 Aligned_cols=156 Identities=14% Similarity=0.063 Sum_probs=109.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC-CcceEEeeEEeecCcceEEEEEEEcCCchhh----hcccccc---c
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFED-ASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEEF----SIRSLPI---S 119 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~-t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~----~~~~~~~---~ 119 (289)
...|+|+|.+|||||||++++.+..... .+.. |.........+ .+ ...+.+|||||+... ..+...+ +
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~--~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV--DD-GRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe--CC-ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 3569999999999999999999875321 2222 22222222222 11 256899999997421 1222233 4
Q ss_pred cCccEEEEEEeCCCH---hhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 120 DQLTALVMVFNLNDL---STLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~---~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
+.++++|+|+|+++. ++++.+..|...+.... ..|+++|+||+|+... .....+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-----~~~~~~-------------- 294 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-----EELAEL-------------- 294 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-----HHHHHH--------------
Confidence 569999999999976 78888888888776553 3589999999999542 111112
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
++.++...+++++++||+++ +|+++++++|.+.+
T Consensus 295 ------------------------~~~l~~~~~~~vi~iSAktg------------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 295 ------------------------LKELKKALGKPVFPISALTG------------EGLDELLYALAELL 328 (329)
T ss_pred ------------------------HHHHHHHcCCcEEEEEccCC------------cCHHHHHHHHHHHh
Confidence 55666667788999999999 99999999998753
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=4.1e-18 Score=140.34 Aligned_cols=146 Identities=16% Similarity=0.055 Sum_probs=95.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC--CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc--------cccccccCc
Q 040295 53 LIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI--------RSLPISDQL 122 (289)
Q Consensus 53 ~ilG~~gvGKSSLi~rl~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~--------~~~~~~~~a 122 (289)
+++|.+|||||||++++.+... ......+. ........... ...+.+|||||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t-~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVT-RDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCce-eCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 5799999999999999998752 22222221 11112222222 35689999999877543 223457789
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|++|+|+|..++.+..... +...++.. ..|+++|+||+|+.... .
T Consensus 78 d~ii~v~d~~~~~~~~~~~-~~~~~~~~-~~piiiv~nK~D~~~~~--------~------------------------- 122 (157)
T cd01894 78 DVILFVVDGREGLTPADEE-IAKYLRKS-KKPVILVVNKVDNIKEE--------D------------------------- 122 (157)
T ss_pred CEEEEEEeccccCCccHHH-HHHHHHhc-CCCEEEEEECcccCChH--------H-------------------------
Confidence 9999999998765444321 22223322 35899999999996421 0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
........++ +++++||+++ .|++++|++|+++|
T Consensus 123 --------------~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~~ 157 (157)
T cd01894 123 --------------EAAEFYSLGFGEPIPISAEHG------------RGIGDLLDAILELL 157 (157)
T ss_pred --------------HHHHHHhcCCCCeEEEecccC------------CCHHHHHHHHHhhC
Confidence 0111223455 6899999999 99999999998764
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.76 E-value=1e-17 Score=168.43 Aligned_cols=157 Identities=19% Similarity=0.161 Sum_probs=113.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCC------cceEEee--EEeec---CcceEEEEEEEcCCchhhh
Q 040295 51 GILIIGSSNVGKRTILSRLLSVN-------FEDASDSS------SELLVNG--WTINT---KYYTADVSLWMAHLHEEFS 112 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~-------~~~~~~~t------~~~~~~~--~~i~~---~~~~~~l~I~Dt~G~e~~~ 112 (289)
+|+|+|+.++|||||+++|+... +...+..+ .+.++.. ..+.. ++..+.+.+|||||++.|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 69999999999999999998752 22222221 2333322 22222 3456889999999999998
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
.....+++.+|++|+|||+++..+++....|...+. ...|+++|+||+|+.... ...+
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~------~~~~-------------- 142 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSAD------PERV-------------- 142 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccC------HHHH--------------
Confidence 888889999999999999998777777777665443 234789999999984311 1111
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..+++...++ +++++||++| .|++++|++|.+.+.+.
T Consensus 143 ------------------------~~el~~~lg~~~~~vi~vSAktG------------~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 143 ------------------------KKEIEEVIGLDASEAILASAKTG------------IGIEEILEAIVKRVPPP 182 (595)
T ss_pred ------------------------HHHHHHHhCCCcceEEEeeccCC------------CCHHHHHHHHHHhCCCC
Confidence 3445555555 4899999999 99999999999876543
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=7.7e-18 Score=165.39 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=104.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh--------hhccccccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE--------FSIRSLPIS 119 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~--------~~~~~~~~~ 119 (289)
..+|+|+|.+|||||||+++|++..+.. ...++.+.+.....+...+ ..+.+|||||++. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3799999999999999999999876432 2223333333333333333 3588999999762 333345578
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
+.+|++|+|||+++..++.. ..|...++. ...|+++|+||+|+.... ...
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-~~~piilV~NK~Dl~~~~-------~~~--------------------- 165 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR-SGKPVILAANKVDDERGE-------ADA--------------------- 165 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH-cCCCEEEEEECccCCccc-------hhh---------------------
Confidence 89999999999998766543 234444443 345899999999984210 000
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
...++ .++ ..+++||++| .|+.++|++|+..+..
T Consensus 166 -----------------~~~~~--~g~~~~~~iSA~~g------------~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 166 -----------------AALWS--LGLGEPHPVSALHG------------RGVGDLLDAVLAALPE 200 (472)
T ss_pred -----------------HHHHh--cCCCCeEEEEcCCC------------CCcHHHHHHHHhhccc
Confidence 22232 344 3579999999 9999999999988754
No 165
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=1.3e-17 Score=142.74 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=80.5
Q ss_pred ccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc----------
Q 040295 39 DSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH---------- 108 (289)
Q Consensus 39 ~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~---------- 108 (289)
++..++.....++|+|+|++|+|||||++++.+..+...+..+.+.+........+. .+.+|||||.
T Consensus 8 ~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~ 84 (179)
T TIGR03598 8 VKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEK 84 (179)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHH
Confidence 333455567789999999999999999999998875444444444332111111111 5899999994
Q ss_pred hhhhcccccccc---CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 109 EEFSIRSLPISD---QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 109 e~~~~~~~~~~~---~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+.|..+...|++ .++++|+|+|.+++.+..... ++..+.. ...|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 85 EKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-RGIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-cCCCEEEEEECcccCC
Confidence 334444444554 357999999998765555543 2233333 3457999999999964
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.75 E-value=9.9e-18 Score=163.67 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=106.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc--------ccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR--------SLP 117 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~--------~~~ 117 (289)
..++||+++|.+|||||||+|+|++.+.. ....+....++....+..++ ..+.+|||||++.+... ...
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34589999999999999999999987642 11112222233333333343 45899999998654322 124
Q ss_pred cccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
+++.+|++|+|||++++.+++....|.. ....|+++|+||+|+.+.. ..
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~~~piiiV~NK~DL~~~~--------~~------------------- 339 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE----LKDKPVIVVLNKADLTGEI--------DL------------------- 339 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh----cCCCCcEEEEEhhhccccc--------hh-------------------
Confidence 6788999999999999988887665544 3345899999999995311 00
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
. ...+.+++++||++| .|+++++++|.+.+.
T Consensus 340 --------------------~---~~~~~~~i~iSAktg------------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 340 --------------------E---EENGKPVIRISAKTG------------EGIDELREAIKELAF 370 (449)
T ss_pred --------------------h---hccCCceEEEEeeCC------------CCHHHHHHHHHHHHh
Confidence 1 223567999999999 999999999998764
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=1.6e-17 Score=160.58 Aligned_cols=160 Identities=18% Similarity=0.106 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc-----------
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS----------- 115 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~----------- 115 (289)
..+||+++|.+|||||||+++|++.+.... ..+....+.....+..++ ..+.+|||||+.++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999998764321 111111122222222233 368999999975443221
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
..+++.+|++|+|+|++++.+..... ++..+.. ...|+++|+||+|+.... +....+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-~~~~iiiv~NK~Dl~~~~----~~~~~~----------------- 305 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE-AGKALVIVVNKWDLVKDE----KTREEF----------------- 305 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-cCCcEEEEEECcccCCCH----HHHHHH-----------------
Confidence 23578899999999999887777654 3333333 345899999999996210 111111
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHH-HHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLE-WCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+.. +.....++++++||++| .|++++|+++....
T Consensus 306 ------------------~~~~~~~~~~~~~~~vi~~SA~~g------------~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 306 ------------------KKELRRKLPFLDFAPIVFISALTG------------QGVDKLLDAIDEVY 343 (429)
T ss_pred ------------------HHHHHHhcccCCCCceEEEeCCCC------------CCHHHHHHHHHHHH
Confidence 111222 22223478999999999 99999999988754
No 168
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=5e-17 Score=135.43 Aligned_cols=155 Identities=19% Similarity=0.130 Sum_probs=98.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc----------c-cc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDAS-DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI----------R-SL 116 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~----------~-~~ 116 (289)
.++|+++|++|+|||||++++++..+.... .+..........+...+ ..+.+|||||...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 479999999999999999999987643211 11111112122222232 3578999999643311 1 11
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
..++.+|++|+|+|++++.+..... ++..+... ..|+++|+||+|+..... .....+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~-~~~~iiv~nK~Dl~~~~~---~~~~~~------------------ 136 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILEE-GKALVIVVNKWDLVEKDS---KTMKEF------------------ 136 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc-CCCEEEEEeccccCCccH---HHHHHH------------------
Confidence 2456899999999999887766543 33333332 358899999999964310 001111
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHH----cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTE----HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
...+... ...+++++||+++ .|+.++++.+.+
T Consensus 137 --------------------~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~l~~ 172 (174)
T cd01895 137 --------------------KKEIRRKLPFLDYAPIVFISALTG------------QGVDKLFDAIDE 172 (174)
T ss_pred --------------------HHHHHhhcccccCCceEEEeccCC------------CCHHHHHHHHHH
Confidence 1112222 2367999999999 999999999876
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=5.2e-17 Score=133.86 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=98.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc--------ccccccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI--------RSLPISD 120 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~--------~~~~~~~ 120 (289)
..+|+++|++|+|||||++++.+..+................+ .......+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999876532211111111111111 111235789999999653321 2234577
Q ss_pred CccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 121 QLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
.+|++++|+|.+++ +.... .+...+... ..|+++|+||+|+.... +.....
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~-~~~~iiv~nK~Dl~~~~----~~~~~~--------------------- 133 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKKS-KTPVILVLNKIDLVKDK----EDLLPL--------------------- 133 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHHh-CCCEEEEEEchhccccH----HHHHHH---------------------
Confidence 89999999999987 22222 223333333 34788899999996311 111111
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+....+ .+++++|++++ .|++++++.|.+.|
T Consensus 134 -----------------~~~~~~~~~~~~~~~~s~~~~------------~~~~~l~~~l~~~~ 168 (168)
T cd04163 134 -----------------LEKLKELGPFAEIFPISALKG------------ENVDELLEEIVKYL 168 (168)
T ss_pred -----------------HHHHHhccCCCceEEEEeccC------------CChHHHHHHHHhhC
Confidence 334444443 57999999999 99999999998754
No 170
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.74 E-value=3.7e-17 Score=143.29 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=102.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCC--C-CCC--CCCCcceEEeeEEee---------cC----------------c----
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVN--F-EDA--SDSSSELLVNGWTIN---------TK----------------Y---- 95 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~--~-~~~--~~~t~~~~~~~~~i~---------~~----------------~---- 95 (289)
+.|+++|+.|+|||||+..+.+.. + ... ...+....+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 468999999999999999997542 1 111 111222111111111 00 0
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH----hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCch
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL----STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVH 171 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~----~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~ 171 (289)
....+.+|||||++.|.......+..+|++++|+|++++ .+++.+..| ...+.+|+++|+||+|+....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~~~~~iiivvNK~Dl~~~~--- 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIMGLKHIIIVQNKIDLVKEE--- 153 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHcCCCcEEEEEEchhccCHH---
Confidence 125789999999998876555667788999999999863 444444433 233345788999999996321
Q ss_pred hHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCc
Q 040295 172 AEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDS 248 (289)
Q Consensus 172 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~ 248 (289)
+.. ...+.+++++..+ +++++++||++|
T Consensus 154 -~~~------------------------------------~~~~~i~~~~~~~~~~~~~i~~vSA~~g------------ 184 (203)
T cd01888 154 -QAL------------------------------------ENYEQIKKFVKGTIAENAPIIPISAQLK------------ 184 (203)
T ss_pred -HHH------------------------------------HHHHHHHHHHhccccCCCcEEEEeCCCC------------
Confidence 000 1112244555443 567999999999
Q ss_pred hhHHHHHHHHHHhcc
Q 040295 249 QGVERLYGALSAHMW 263 (289)
Q Consensus 249 ~~i~~l~~~L~~~~~ 263 (289)
.|++++|+.|...+.
T Consensus 185 ~gi~~L~~~l~~~l~ 199 (203)
T cd01888 185 YNIDVLLEYIVKKIP 199 (203)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999987653
No 171
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=9.6e-17 Score=147.87 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=102.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCcceEEeeEEeecCcceEEEEEEEcCCchhhh--------ccccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDAS--DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS--------IRSLPIS 119 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~--------~~~~~~~ 119 (289)
-.|+|+|++|||||||+|++++..+.... ..|......... ... ...+.+|||||..... ......+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-EcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 35999999999999999999988764322 222222222211 112 2679999999974322 1222356
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHH-HHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWV-PSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~-~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
..+|++++|+|+++. +.....++ ..+. ....|+++|+||+|+.... +...
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~-~~~~pvilVlNKiDl~~~~----~~l~---------------------- 133 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLK-KVKTPVILVLNKIDLVKDK----EELL---------------------- 133 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHh-hcCCCEEEEEECCcCCCCH----HHHH----------------------
Confidence 789999999999873 22222222 2333 2234899999999996321 1111
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
.....+....+ .+++++||+++ .|++++++.|...+.++.
T Consensus 134 ----------------~~~~~l~~~~~~~~i~~iSA~~~------------~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 134 ----------------PLLEELSELMDFAEIVPISALKG------------DNVDELLDVIAKYLPEGP 174 (292)
T ss_pred ----------------HHHHHHHhhCCCCeEEEecCCCC------------CCHHHHHHHHHHhCCCCC
Confidence 12556666555 46999999999 999999999999876554
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.73 E-value=5.9e-17 Score=157.10 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCchh---------hhcccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLHEE---------FSIRSLPI 118 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~---------~~~~~~~~ 118 (289)
++|+|+|.+|||||||+|+|.+.++... ...|.........+... ..+.+|||+|..+ |... ...
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~---~~~~l~DTaG~~r~lp~~lve~f~~t-l~~ 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV---GETVLADTVGFIRHLPHDLVAAFKAT-LQE 273 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC---CeEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 6899999999999999999998775422 12333333323333221 2578999999733 2221 233
Q ss_pred ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 119 SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
++.+|++|+|+|++++.+++.+..|...+.... ..|+|+|+||+|+.+.. ...+
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~------~~~~------------------ 329 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF------EPRI------------------ 329 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch------hHHH------------------
Confidence 678999999999999988888765544443332 34899999999995320 0001
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHHcCCe-EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE-YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. ....+++ ++++||++| .|+++++++|...+...
T Consensus 330 ---------------------~--~~~~~~~~~v~ISAktG------------~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 330 ---------------------D--RDEENKPIRVWLSAQTG------------AGIPLLFQALTERLSGE 364 (426)
T ss_pred ---------------------H--HHhcCCCceEEEeCCCC------------CCHHHHHHHHHHHhhhc
Confidence 0 0123444 588999999 99999999999887543
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.72 E-value=1e-16 Score=161.01 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=110.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV---NFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~---~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
+.|+++|++++|||||+++|.+. .+.+++..+.+.++....+...+ ..+.+||+||++.|......++.++|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 35899999999999999999963 33334444444443322333333 67999999999999877777788999999
Q ss_pred EEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|+|+++ +++++.+. + +...+.+++++|+||+|+.+. . .+
T Consensus 79 LVVDa~~G~~~qT~ehl~-i---l~~lgi~~iIVVlNK~Dlv~~------~--~~------------------------- 121 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA-V---LDLLGIPHTIVVITKADRVNE------E--EI------------------------- 121 (581)
T ss_pred EEEECCCCCcHHHHHHHH-H---HHHcCCCeEEEEEECCCCCCH------H--HH-------------------------
Confidence 9999997 66766654 2 333344458999999999642 1 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHc----CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEH----RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~----~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
......+.+++..+ +++++++||++| .|+++++..|...+
T Consensus 122 -------~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG------------~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 122 -------KRTEMFMKQILNSYIFLKNAKIFKTSAKTG------------QGIGELKKELKNLL 165 (581)
T ss_pred -------HHHHHHHHHHHHHhCCCCCCcEEEEeCCCC------------CCchhHHHHHHHHH
Confidence 11122355666554 468999999999 99999999887654
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=9.8e-17 Score=160.94 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=81.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
....+|+|+|++++|||||+++|.+..+......++........+...+. ..+.+|||||++.|..++...++.+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 35578999999999999999999988876544333333322223322221 16899999999999988888899999999
Q ss_pred EEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 127 MVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 127 lV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
+|||.++ +++++.+. .... ...|+++++||+|+.
T Consensus 164 LVVda~dgv~~qT~e~i~----~~~~-~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAIS----HAKA-ANVPIIVAINKIDKP 200 (587)
T ss_pred EEEECCCCCCHhHHHHHH----HHHH-cCCCEEEEEECcccc
Confidence 9999986 45554432 2222 234799999999995
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.71 E-value=2.1e-16 Score=161.36 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=110.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcc--eEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSE--LLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~--~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
..+...|+|+|+.++|||||+++|....+......+.. ...+...+...+....+.+|||||++.|..++..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 34557899999999999999999998877543222222 1223333333334578999999999999988888899999
Q ss_pred EEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 124 ALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 124 ~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
++|+|+|+++ +++++.+.. +.. ...|+|+|+||+|+.... .....+.+.
T Consensus 321 iaILVVDA~dGv~~QT~E~I~~----~k~-~~iPiIVViNKiDl~~~~--~e~v~~eL~--------------------- 372 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAINY----IQA-ANVPIIVAINKIDKANAN--TERIKQQLA--------------------- 372 (742)
T ss_pred EEEEEEECcCCCChhhHHHHHH----HHh-cCceEEEEEECCCccccC--HHHHHHHHH---------------------
Confidence 9999999987 456655543 222 234899999999995321 000011110
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
....+...++ ++++++||++| .|++++++.|...
T Consensus 373 ---------------~~~ll~e~~g~~vpvv~VSAktG------------~GIdeLle~I~~l 408 (742)
T CHL00189 373 ---------------KYNLIPEKWGGDTPMIPISASQG------------TNIDKLLETILLL 408 (742)
T ss_pred ---------------HhccchHhhCCCceEEEEECCCC------------CCHHHHHHhhhhh
Confidence 0001122333 68999999999 9999999998764
No 176
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=2.2e-16 Score=152.75 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=107.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC-CcceEEeeEEeecCcceEEEEEEEcCCchh----hhcccccc---cc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEE----FSIRSLPI---SD 120 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~-t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----~~~~~~~~---~~ 120 (289)
..|+++|.+|||||||++++++.+... .+.. |....+..+.+.. ...+.+||+||.-. ...+...+ ++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~---~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD---GRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC---CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 379999999999999999999876321 1222 2222222222221 24689999999632 22222333 45
Q ss_pred CccEEEEEEeCCCH---hhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 121 QLTALVMVFNLNDL---STLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~---~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
.++++|+|+|+++. +.++.+..|...+..+. ..|++||+||+|+... ...
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------~e~--------------- 292 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--------EEN--------------- 292 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------HHH---------------
Confidence 68999999999864 67788888888776653 3489999999998321 111
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+..++...+.+++++||+++ +|+++++++|.+.+...
T Consensus 293 -----------------------l~~l~~~l~~~i~~iSA~tg------------eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 293 -----------------------LEEFKEKLGPKVFPISALTG------------QGLDELLYAVAELLEET 329 (424)
T ss_pred -----------------------HHHHHHHhCCcEEEEeCCCC------------CCHHHHHHHHHHHHHhC
Confidence 35566666678999999999 99999999998876443
No 177
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.70 E-value=1.2e-16 Score=140.14 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=89.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc-cEEEEEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL-TALVMVF 129 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a-d~vIlV~ 129 (289)
+|+++|++|||||||+++|..+.+...+.++ .................+.+||+||+++++.....+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999999876655443 2222222222223346799999999999988888888998 9999999
Q ss_pred eCCCH-hhHHHHHHHHHHhhh----c-CCCeEEEEeeCCCCCCCCC
Q 040295 130 NLNDL-STLDALKHWVPSIDL----Q-KFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 130 Dv~~~-~S~~~l~~~~~~i~~----~-~~~~iivvgnK~Dl~~~~~ 169 (289)
|.++. .++..+..|+..+.. . ...|+++|+||+|+....+
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 99987 788887777655422 1 3459999999999976543
No 178
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.2e-16 Score=128.13 Aligned_cols=171 Identities=20% Similarity=0.227 Sum_probs=127.5
Q ss_pred hhhhhheecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEE
Q 040295 25 LSFVRVLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWM 104 (289)
Q Consensus 25 ~~~~~~~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~D 104 (289)
+|++--..||.++ ++|+++|-.++||||++.++.-+. +....+|.|+....++ ++.+++.+||
T Consensus 5 ~sk~~~k~f~~KE------------~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt----ykN~kfNvwd 67 (180)
T KOG0071|consen 5 MSKLLSKIFGNKE------------MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWD 67 (180)
T ss_pred HHHHHHHHhCccc------------ceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE----eeeeEEeeee
Confidence 4555555666654 699999999999999999998777 3567788887765544 3467899999
Q ss_pred cCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhc
Q 040295 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKR 181 (289)
Q Consensus 105 t~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~ 181 (289)
.+|++..+.+|.+|+.+..++|||.|..+.+..+++++-+..+-.. ..-++++.+||.|+.....+. +....+
T Consensus 68 vGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pq-ei~d~l--- 143 (180)
T KOG0071|consen 68 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQ-EIQDKL--- 143 (180)
T ss_pred ccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHH-HHHHHh---
Confidence 9999999999999999999999999999998899888665555322 334899999999995433221 111111
Q ss_pred ccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 182 EESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
. .+. ++....-...+||.++ .|+.+-|.+|+..
T Consensus 144 -----------------------e-----------Le~-~r~~~W~vqp~~a~~g------------dgL~eglswlsnn 176 (180)
T KOG0071|consen 144 -----------------------E-----------LER-IRDRNWYVQPSCALSG------------DGLKEGLSWLSNN 176 (180)
T ss_pred -----------------------c-----------ccc-ccCCccEeeccccccc------------hhHHHHHHHHHhh
Confidence 0 111 2223344678999999 9999999999876
Q ss_pred cc
Q 040295 262 MW 263 (289)
Q Consensus 262 ~~ 263 (289)
+-
T Consensus 177 ~~ 178 (180)
T KOG0071|consen 177 LK 178 (180)
T ss_pred cc
Confidence 53
No 179
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.70 E-value=1.3e-16 Score=134.70 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=97.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc------cccc--cC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS------LPIS--DQ 121 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~------~~~~--~~ 121 (289)
|+|+++|.||||||||+|++++.+......+....+...-.+...+ ..+.+.|+||...+.... ..++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999885433233333333333333332 579999999965443322 2333 57
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
.|++|+|.|.++.+.--.+ ...+...+ .|+++|.||+|+... +.+
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~g-~P~vvvlN~~D~a~~--------~g~----------------------- 123 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLELG-IPVVVVLNKMDEAER--------KGI----------------------- 123 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHHTT-SSEEEEEETHHHHHH--------TTE-----------------------
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHHcC-CCEEEEEeCHHHHHH--------cCC-----------------------
Confidence 9999999999875433333 33333333 489999999999531 111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHH
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGAL 258 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L 258 (289)
.. ....+....|++.+.+||+++ +|++++++++
T Consensus 124 ---~i---------d~~~Ls~~Lg~pvi~~sa~~~------------~g~~~L~~~I 156 (156)
T PF02421_consen 124 ---EI---------DAEKLSERLGVPVIPVSARTG------------EGIDELKDAI 156 (156)
T ss_dssp ---EE----------HHHHHHHHTS-EEEEBTTTT------------BTHHHHHHHH
T ss_pred ---EE---------CHHHHHHHhCCCEEEEEeCCC------------cCHHHHHhhC
Confidence 01 157888888999999999999 9999999875
No 180
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.70 E-value=3.1e-17 Score=134.97 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=95.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
...+.++|-.++|||||++....+.+.+...+|.|...+.. ....+.+.+||.+||.+|++++..|+++++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 36799999999999999999999999999999999776543 33457899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhh---hcCCCeEEEEeeCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSID---LQKFEILLCIGNKVDLL 165 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~---~~~~~~iivvgnK~Dl~ 165 (289)
.|..+++.++..++-+..+- .....|++|.|||.|+.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 99999998887775444442 22344999999999994
No 181
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.70 E-value=4.8e-16 Score=128.51 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=98.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc----------hhhhcccccccc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH----------EEFSIRSLPISD 120 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~----------e~~~~~~~~~~~ 120 (289)
+|+++|++|||||||++.+.++.+......+.+.......+.... .+.+|||||. +.+......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997666555545544433222222222 6899999984 234444444443
Q ss_pred ---CccEEEEEEeCCCH--hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 121 ---QLTALVMVFNLNDL--STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 121 ---~ad~vIlV~Dv~~~--~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
.++++++++|.++. .....+..|+.... .|+++|+||+|+.... ..+..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~----~~vi~v~nK~D~~~~~-----~~~~~----------------- 131 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELG----IPFLVVLTKADKLKKS-----ELAKA----------------- 131 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC----CCEEEEEEchhcCChH-----HHHHH-----------------
Confidence 45789999998865 33334445655442 4789999999996421 11111
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHH--HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCT--EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
......+.. ....+++++||+++ .++.++++.|.+.
T Consensus 132 ------------------~~~~~~~l~~~~~~~~~~~~Sa~~~------------~~~~~l~~~l~~~ 169 (170)
T cd01876 132 ------------------LKEIKKELKLFEIDPPIILFSSLKG------------QGIDELRALIEKW 169 (170)
T ss_pred ------------------HHHHHHHHHhccCCCceEEEecCCC------------CCHHHHHHHHHHh
Confidence 111223332 33457999999999 9999999999875
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.69 E-value=3.6e-16 Score=160.78 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=107.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
..+...|+|+|+.++|||||+++|....+.......+........+...+ ..+.||||||++.|..++...++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45668899999999999999999998776544332222222222233332 4689999999999998888888999999
Q ss_pred EEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|||||+++ +++++.+. ..... ..|+||++||+|+..... ......+
T Consensus 365 ILVVdAddGv~~qT~e~i~----~a~~~-~vPiIVviNKiDl~~a~~--e~V~~eL------------------------ 413 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAIN----HAKAA-GVPIIVAINKIDKPGANP--DRVKQEL------------------------ 413 (787)
T ss_pred EEEEECCCCCCHhHHHHHH----HHHhc-CCcEEEEEECccccccCH--HHHHHHH------------------------
Confidence 99999987 55555442 12222 347999999999943110 0001111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
.....++..++ ++++++||++| .|++++|+.|..
T Consensus 414 ------------~~~~~~~e~~g~~vp~vpvSAktG------------~GI~eLle~I~~ 449 (787)
T PRK05306 414 ------------SEYGLVPEEWGGDTIFVPVSAKTG------------EGIDELLEAILL 449 (787)
T ss_pred ------------HHhcccHHHhCCCceEEEEeCCCC------------CCchHHHHhhhh
Confidence 00112233344 68999999999 999999999875
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=3.7e-16 Score=151.59 Aligned_cols=147 Identities=17% Similarity=0.079 Sum_probs=99.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh--------hhcccccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE--------FSIRSLPISD 120 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~--------~~~~~~~~~~ 120 (289)
++|+|+|.+|||||||+++|.+..... ...+..+.+.....+...+ ..+.+|||||++. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876421 1112222222222333333 5799999999876 2222345678
Q ss_pred CccEEEEEEeCCCHhhHH--HHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 121 QLTALVMVFNLNDLSTLD--ALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~--~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
.+|++|+|+|.+++.+.. .+..|+... ..|+++|+||+|+... .. .
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----~~piilv~NK~D~~~~-------~~-~-------------------- 127 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS----NKPVILVVNKVDGPDE-------EA-D-------------------- 127 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc----CCcEEEEEECccCccc-------hh-h--------------------
Confidence 899999999998754432 344554432 4589999999997421 00 0
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
+.++ ...++ +++++||++| .|+.++|+.+...
T Consensus 128 ------------------~~~~-~~lg~~~~~~iSa~~g------------~gv~~l~~~I~~~ 160 (435)
T PRK00093 128 ------------------AYEF-YSLGLGEPYPISAEHG------------RGIGDLLDAILEE 160 (435)
T ss_pred ------------------HHHH-HhcCCCCCEEEEeeCC------------CCHHHHHHHHHhh
Confidence 2233 24566 4899999999 9999999999873
No 184
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=5.8e-16 Score=125.73 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=100.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc-------cccccCccEE
Q 040295 54 IIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS-------LPISDQLTAL 125 (289)
Q Consensus 54 ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~-------~~~~~~ad~v 125 (289)
|+|++|+|||||++++.+..+.. .................. ....+.+|||||+..+.... ..+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999876542 111111111111121111 03568999999987654332 2467889999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
++|+|.+++....... |...... ...|+++|+||+|+..... ....
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~-~~~~~ivv~nK~D~~~~~~-----~~~~--------------------------- 125 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE-RGKPVLLVLNKIDLLPEEE-----EEEL--------------------------- 125 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh-cCCeEEEEEEccccCChhh-----HHHH---------------------------
Confidence 9999999887776665 3333333 3347899999999975321 0100
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.+..........+++++++||+++ .|++++++.|.+.
T Consensus 126 -------~~~~~~~~~~~~~~~~~~~sa~~~------------~~v~~l~~~l~~~ 162 (163)
T cd00880 126 -------LELRLLILLLLLGLPVIAVSALTG------------EGIDELREALIEA 162 (163)
T ss_pred -------HHHHHhhcccccCCceEEEeeecc------------CCHHHHHHHHHhh
Confidence 000123334445678999999999 9999999999875
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=6.1e-16 Score=149.60 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=100.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEEeeEEeecCcceEEEEEEEcCCc--------hhhhccccccccC
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLVNGWTINTKYYTADVSLWMAHLH--------EEFSIRSLPISDQ 121 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~--------e~~~~~~~~~~~~ 121 (289)
+|+|+|.+|||||||+|+|++...... ..+....+.....+...+ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998764211 111221122222333332 35999999996 3344444566889
Q ss_pred ccEEEEEEeCCCHhhHHH--HHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 122 LTALVMVFNLNDLSTLDA--LKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~--l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
+|++++|+|.+++.+... +..|+.. ...|+++|+||+|+.... ..
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~----~~~piilVvNK~D~~~~~--------~~--------------------- 125 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK----SGKPVILVANKIDGKKED--------AV--------------------- 125 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH----hCCCEEEEEECccCCccc--------cc---------------------
Confidence 999999999987544432 3344432 235899999999985321 00
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
..+ ....++ +++++||++| .|+.++++++...+..
T Consensus 126 -----------------~~~-~~~lg~~~~~~vSa~~g------------~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 126 -----------------AAE-FYSLGFGEPIPISAEHG------------RGIGDLLDAILELLPE 161 (429)
T ss_pred -----------------HHH-HHhcCCCCeEEEeCCcC------------CChHHHHHHHHHhcCc
Confidence 222 234577 6999999999 9999999999987644
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=8e-16 Score=149.24 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=102.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh----------hhccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE----------FSIRS 115 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----------~~~~~ 115 (289)
...++|+|+|.+|+|||||+++|++.+... ...+....+.....+... ...+.+|||||... |....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--CeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 346999999999999999999999876422 112222222222222223 34578999999532 21111
Q ss_pred -cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 116 -LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 116 -~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
..+++.+|++|+|+|++++.+.+... +...+.. ...|+++|+||+|+... +....+
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-~~~~~ivv~NK~Dl~~~-----~~~~~~---------------- 305 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-AGRALVIVVNKWDLVDE-----KTMEEF---------------- 305 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-cCCcEEEEEECccCCCH-----HHHHHH----------------
Confidence 23577899999999999887776654 2333333 34588999999999632 111111
Q ss_pred CCcccCCCCCCCCCCcHHHHHHH-HHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSC-LEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+.. ..+.....++++++||+++ .|++++++.+.+..
T Consensus 306 -------------------~~~~~~~l~~~~~~~i~~~SA~~~------------~gv~~l~~~i~~~~ 343 (435)
T PRK00093 306 -------------------KKELRRRLPFLDYAPIVFISALTG------------QGVDKLLEAIDEAY 343 (435)
T ss_pred -------------------HHHHHHhcccccCCCEEEEeCCCC------------CCHHHHHHHHHHHH
Confidence 1111 1222223478999999999 99999999987644
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.67 E-value=1.3e-15 Score=153.53 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=110.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCC--CC-----CCC------CCCcceEEe--eEEeec---CcceEEEEEEEcCCch
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVN--FE-----DAS------DSSSELLVN--GWTINT---KYYTADVSLWMAHLHE 109 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~--~~-----~~~------~~t~~~~~~--~~~i~~---~~~~~~l~I~Dt~G~e 109 (289)
..-+|+|+|+.++|||||+.+|+... +. ..+ ..+.+.++. ...+.. ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34579999999999999999998632 11 011 011122221 111111 3446889999999999
Q ss_pred hhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 110 ~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
.|...+..+++.+|++|+|+|+++....+....|..... ...|+|+|+||+|+.... ...+
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~------~~~v----------- 146 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAAD------PERV----------- 146 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCccc------HHHH-----------
Confidence 998888888999999999999998766666666654332 234789999999984311 0111
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCe---EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE---YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..++....+++ ++++||++| .|+++++++|...+.+.
T Consensus 147 ---------------------------~~ei~~~lg~~~~~vi~iSAktG------------~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 147 ---------------------------KQEIEDVIGIDASDAVLVSAKTG------------IGIEEVLEAIVERIPPP 186 (600)
T ss_pred ---------------------------HHHHHHHhCCCcceEEEEecCCC------------CCHHHHHHHHHHhCccc
Confidence 23444444553 899999999 99999999999876543
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.7e-15 Score=145.44 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=107.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcc-eEEeeEEeecCcceEEEEEEEcCCchhhhc----c---cccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSE-LLVNGWTINTKYYTADVSLWMAHLHEEFSI----R---SLPISD 120 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~-~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~----~---~~~~~~ 120 (289)
..|+|+|.+|||||||+|++++.+... .+..|+. ..+..+... + ...+.++||||...-.+ + ....++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~--~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-D--ERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-C--CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 469999999999999999999876421 1222222 222222221 1 23589999999742111 1 113467
Q ss_pred CccEEEEEEeCC---CHhhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 121 QLTALVMVFNLN---DLSTLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 121 ~ad~vIlV~Dv~---~~~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
.++++++|+|++ ..+.++.+..|+..+.... ..|+|+|+||+|+.... . +
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-----e---l--------------- 293 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-----E---A--------------- 293 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-----H---H---------------
Confidence 899999999998 5567788888888877653 35889999999995321 1 1
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
...+..+....+ .+++.+||+++ .|++++++.|.+.+...
T Consensus 294 --------------------~~~l~~l~~~~~~~~~Vi~ISA~tg------------~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 294 --------------------EERAKAIVEALGWEGPVYLISAASG------------LGVKELCWDLMTFIEEN 335 (390)
T ss_pred --------------------HHHHHHHHHHhCCCCCEEEEECCCC------------cCHHHHHHHHHHHhhhC
Confidence 111445555544 36899999999 99999999999877544
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=1.7e-15 Score=155.67 Aligned_cols=159 Identities=16% Similarity=0.077 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCcceEEeeEEeecCcceEEEEEEEcCCch----------hhhccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE--DASDSSSELLVNGWTINTKYYTADVSLWMAHLHE----------EFSIRS 115 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e----------~~~~~~ 115 (289)
..+||+|+|.+|||||||+++|++.++. ..+..|. .+.....+..++. .+.+|||||.. .|..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT-RDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC-cCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 4589999999999999999999998752 2222222 2222223333433 46799999953 232221
Q ss_pred -cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 116 -LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 116 -~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
...++.+|++|+|+|+++..+++.+..| ..+.. ...|+|+|+||+|+.+.. ..+.+
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-~~~piIiV~NK~DL~~~~-----~~~~~---------------- 582 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-AGRALVLVFNKWDLMDEF-----RRQRL---------------- 582 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-cCCCEEEEEEchhcCChh-----HHHHH----------------
Confidence 2346889999999999998888877533 34433 345899999999996421 11111
Q ss_pred CCcccCCCCCCCCCCcHHHHHHHHHHHHH-cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTE-HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+.+...... ...+.+++||++| .|++++++.+.+.+.
T Consensus 583 -------------------~~~~~~~l~~~~~~~ii~iSAktg------------~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 583 -------------------ERLWKTEFDRVTWARRVNLSAKTG------------WHTNRLAPAMQEALE 621 (712)
T ss_pred -------------------HHHHHHhccCCCCCCEEEEECCCC------------CCHHHHHHHHHHHHH
Confidence 0011111111 1246799999999 999999999988654
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2e-15 Score=128.65 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=118.9
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCC--------C-C---CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFED--------A-S---DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~--------~-~---~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~ 113 (289)
.....||+|.|+.++||||+++++....... . . ..|...++.+..+..+ ..+.++|||||++|+-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~---~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED---TGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc---ceEEEecCCCcHHHHH
Confidence 3445899999999999999999998766311 1 1 1344445554444332 4689999999999999
Q ss_pred cccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 114 RSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
++..+.+++.++|++.|.+.+..| +....+..+...+..|+++.+||.||.+..+++ .
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe-~-------------------- 141 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNPIPVVVAINKQDLFDALPPE-K-------------------- 141 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccCCCEEEEeeccccCCCCCHH-H--------------------
Confidence 999999999999999999999999 666677777776667999999999997643321 1
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHH--cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTE--HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
+.+.... ...+.|+.+|.++ +++.+.+..|.-.
T Consensus 142 -----------------------i~e~l~~~~~~~~vi~~~a~e~------------~~~~~~L~~ll~~ 176 (187)
T COG2229 142 -----------------------IREALKLELLSVPVIEIDATEG------------EGARDQLDVLLLK 176 (187)
T ss_pred -----------------------HHHHHHhccCCCceeeeecccc------------hhHHHHHHHHHhh
Confidence 2333333 3788999999999 9999988887665
No 191
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.66 E-value=8.5e-16 Score=149.08 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=96.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCCcceEEeeEEeecCcc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV--NFED-----------------------------ASDSSSELLVNGWTINTKYY 96 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~--~~~~-----------------------------~~~~t~~~~~~~~~i~~~~~ 96 (289)
+.++|+++|+.++|||||+.+|+.. .+.. +.......+.....+.. .
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~--~ 83 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET--D 83 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc--C
Confidence 3488999999999999999999862 1110 01112222332223332 3
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHH--HHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHH
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDAL--KHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEY 174 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l--~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~ 174 (289)
...+.+|||||++.|.......++.+|++|+|+|+++.+++... ..++......+.+++|+|+||+|+.... +.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~----~~ 159 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYD----EE 159 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCcc----HH
Confidence 46799999999998866555567889999999999987543211 1122222333445899999999996311 00
Q ss_pred HHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCC
Q 040295 175 RRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNV 236 (289)
Q Consensus 175 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~ 236 (289)
...+..+++..+++..+ ++++++||++|
T Consensus 160 ----------------------------------~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g 192 (426)
T TIGR00483 160 ----------------------------------EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNG 192 (426)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHcCCCcccceEEEeecccc
Confidence 01122344677777665 57999999999
No 192
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.66 E-value=5.4e-16 Score=151.18 Aligned_cols=165 Identities=21% Similarity=0.241 Sum_probs=120.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....++|+++|+.||||||||-.++..+|.+...+-......+..+... .+...|.||...+.-+.....-++.|+++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcCEE
Confidence 3445899999999999999999999999987765555433222222222 23478899964443333334567899999
Q ss_pred EEEEeCCCHhhHHHHH-HHHHHhhhcCCC----eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 126 VMVFNLNDLSTLDALK-HWVPSIDLQKFE----ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~-~~~~~i~~~~~~----~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
++||+++++++++.+. .|++.++...++ |||+||||+|+........+.
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~-------------------------- 137 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV-------------------------- 137 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH--------------------------
Confidence 9999999999999998 899999888633 999999999997643211000
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcC-Ce-EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHR-IE-YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
....+...+. ++ .|+|||++. .++.++|-...+.++..
T Consensus 138 ---------------~~~pim~~f~EiEtciecSA~~~------------~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 138 ---------------NTLPIMIAFAEIETCIECSALTL------------ANVSELFYYAQKAVIHP 177 (625)
T ss_pred ---------------HHHHHHHHhHHHHHHHhhhhhhh------------hhhHhhhhhhhheeecc
Confidence 1334444443 43 799999999 99999999988877654
No 193
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.65 E-value=3.7e-15 Score=131.38 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=78.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------C------CCcceEE--eeEE--eec-CcceEEEEEEEcCCc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDAS-----------D------SSSELLV--NGWT--INT-KYYTADVSLWMAHLH 108 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~-----------~------~t~~~~~--~~~~--i~~-~~~~~~l~I~Dt~G~ 108 (289)
+|+|+|+.++|||||+++|+........ . ...+..+ .... ... .+..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999975543210 0 0011111 1111 111 244678999999999
Q ss_pred hhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 109 e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
+.|......+++.+|++|+|+|+++..++.. ..|+......+ .|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~~-~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILEG-LPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcC-CCEEEEEECcccC
Confidence 9987777778899999999999987766643 33444443333 5789999999986
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.65 E-value=2.8e-15 Score=150.36 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=82.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCcceEEeeEEeecC------------cceEEEEEEEcCCchhhhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA----SDSSSELLVNGWTINTK------------YYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~----~~~t~~~~~~~~~i~~~------------~~~~~l~I~Dt~G~e~~~~ 113 (289)
.-|+|+|++++|||||+++|.+..+... .+++++..+.+...... .....+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 4699999999999999999998876533 33444544433221100 0012388999999999999
Q ss_pred cccccccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 114 RSLPISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
++..+++.+|++++|||+++ +++++.+..+ +. ...|+++++||+|+.+
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~-~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM-YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH-cCCCEEEEEECCCccc
Confidence 88888999999999999987 6777666533 22 2347999999999975
No 195
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=2.3e-15 Score=147.77 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=101.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC-CcceEEeeEEeecCcceEEEEEEEcCCchh----hhccc---cccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFED-ASDS-SSELLVNGWTINTKYYTADVSLWMAHLHEE----FSIRS---LPIS 119 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~-t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----~~~~~---~~~~ 119 (289)
..+|+|+|.+|||||||+++|++..... .+.. |...... .+... ...+.+|||||.-. ...+. -..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lG--vv~~~--~~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLG--VVQAG--DTRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEE--EEEEC--CeEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 3679999999999999999999875432 2222 2222222 22222 24689999999521 11111 1235
Q ss_pred cCccEEEEEEeCCCH----hhHHHHHHHHHHhhhc-------------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcc
Q 040295 120 DQLTALVMVFNLNDL----STLDALKHWVPSIDLQ-------------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKRE 182 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~----~S~~~l~~~~~~i~~~-------------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~ 182 (289)
..++++|+|+|+++. +.++.+..|...+..+ ...|+|||+||+|+... +.+
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--------~el---- 302 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--------REL---- 302 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--------HHH----
Confidence 679999999999753 3455555555444332 23589999999999421 111
Q ss_pred cCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 183 ESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...........+++++++||+++ .|+++++.+|.+.+
T Consensus 303 -------------------------------~e~l~~~l~~~g~~Vf~ISA~tg------------eGLdEL~~~L~ell 339 (500)
T PRK12296 303 -------------------------------AEFVRPELEARGWPVFEVSAASR------------EGLRELSFALAELV 339 (500)
T ss_pred -------------------------------HHHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHH
Confidence 00022233445789999999999 99999999998876
Q ss_pred cc
Q 040295 263 WP 264 (289)
Q Consensus 263 ~~ 264 (289)
-.
T Consensus 340 ~~ 341 (500)
T PRK12296 340 EE 341 (500)
T ss_pred Hh
Confidence 43
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=1.4e-15 Score=156.14 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=101.4
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh--------hhccccc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE--------FSIRSLP 117 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~--------~~~~~~~ 117 (289)
.....+|+|+|.+|||||||+|+|++..+.. ...+.+.+..............+.+|||||.+. +......
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 3445789999999999999999999876421 222333332222211111234689999999763 2223345
Q ss_pred cccCccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
+++.+|++|+|+|.++..+ ... .|...++. ...|+|+|+||+|+.... ...
T Consensus 351 ~~~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~-~~~pvIlV~NK~D~~~~~-------~~~------------------ 402 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLT--STDERIVRMLRR-AGKPVVLAVNKIDDQASE-------YDA------------------ 402 (712)
T ss_pred HHHhCCEEEEEEECCCCCC--HHHHHHHHHHHh-cCCCEEEEEECcccccch-------hhH------------------
Confidence 6789999999999986422 222 34455544 345899999999984310 000
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
...+. .++ ..+++||++| .||.++|++|+..+..
T Consensus 403 --------------------~~~~~--lg~~~~~~iSA~~g------------~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 403 --------------------AEFWK--LGLGEPYPISAMHG------------RGVGDLLDEALDSLKV 437 (712)
T ss_pred --------------------HHHHH--cCCCCeEEEECCCC------------CCchHHHHHHHHhccc
Confidence 12222 233 3579999999 9999999999987754
No 197
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=1.3e-15 Score=153.18 Aligned_cols=146 Identities=15% Similarity=0.073 Sum_probs=102.8
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc------ccccc--cCccEEEE
Q 040295 56 GSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR------SLPIS--DQLTALVM 127 (289)
Q Consensus 56 G~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~------~~~~~--~~ad~vIl 127 (289)
|++|||||||+|++.+.++.....++.+.+.....+..++ .++.+|||||++.+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876444444444444444444443 35899999999887654 22333 37899999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDE 207 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+|.++.+. ...+...+... ..|+++|+||+|+.... .+
T Consensus 79 VvDat~ler---~l~l~~ql~~~-~~PiIIVlNK~Dl~~~~--------~i----------------------------- 117 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLEL-GIPMILALNLVDEAEKK--------GI----------------------------- 117 (591)
T ss_pred EecCCcchh---hHHHHHHHHhc-CCCEEEEEehhHHHHhC--------CC-----------------------------
Confidence 999987432 22333333332 35899999999994311 11
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 208 EPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
....+.+++..+++++++||++| .|++++++.+.+..
T Consensus 118 ------~~d~~~L~~~lg~pvv~tSA~tg------------~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 118 ------RIDEEKLEERLGVPVVPTSATEG------------RGIERLKDAIRKAI 154 (591)
T ss_pred ------hhhHHHHHHHcCCCEEEEECCCC------------CCHHHHHHHHHHHh
Confidence 01156788888999999999999 99999999998753
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=4.7e-15 Score=132.99 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=57.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh----c---cccccccCc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS----I---RSLPISDQL 122 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~----~---~~~~~~~~a 122 (289)
+|+++|++|||||||+++|.+..... .+..+. .......+... ...+++|||||+.... . ....+++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 79999999999999999999876322 222222 11112222223 3579999999975332 1 112467899
Q ss_pred cEEEEEEeCCCHh-hHHHHHH
Q 040295 123 TALVMVFNLNDLS-TLDALKH 142 (289)
Q Consensus 123 d~vIlV~Dv~~~~-S~~~l~~ 142 (289)
|++++|+|++++. ..+.+.+
T Consensus 79 d~il~V~D~t~~~~~~~~~~~ 99 (233)
T cd01896 79 DLILMVLDATKPEGHREILER 99 (233)
T ss_pred CEEEEEecCCcchhHHHHHHH
Confidence 9999999998765 3443333
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.63 E-value=2.4e-15 Score=132.31 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=71.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------CCCCcceEEeeEEeecCcceEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDA-------------------------------SDSSSELLVNGWTINTKYYTAD 99 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~-------------------------------~~~t~~~~~~~~~i~~~~~~~~ 99 (289)
+|+|+|.+|+|||||+++|+...-... .......+.....+... ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 589999999999999999986432110 00111111111122222 346
Q ss_pred EEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 100 l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+.+|||||++.|.......++.+|++|+|+|++++..-+. ......+...+.+++|+|.||+|+..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcCCCcEEEEEEchhccc
Confidence 8899999999886555566789999999999986532111 11222233334456888999999953
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.61 E-value=3.9e-15 Score=143.74 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC---CCC--CCCcceEEeeE--------------Eeec--Cc------ceEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE---DAS--DSSSELLVNGW--------------TINT--KY------YTADV 100 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~---~~~--~~t~~~~~~~~--------------~i~~--~~------~~~~l 100 (289)
+.++|+++|..++|||||+++|.+.... ++. ..|....+... +... ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4589999999999999999999753221 111 11111111100 0000 00 13578
Q ss_pred EEEEcCCchhhhccccccccCccEEEEEEeCCCH----hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHH
Q 040295 101 SLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL----STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRR 176 (289)
Q Consensus 101 ~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~----~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r 176 (289)
.+|||||++.|...+......+|++|+|+|.+++ ++.+.+. .+...+.+++++|+||+|+.+. +...
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~~gi~~iIVvvNK~Dl~~~-----~~~~ 153 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALEIIGIKNIVIVQNKIDLVSK-----EKAL 153 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHHHcCCCeEEEEEEccccCCH-----HHHH
Confidence 9999999999977666667788999999999853 3444333 3344455678899999999642 1100
Q ss_pred HhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCchhHHH
Q 040295 177 RLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDSQGVER 253 (289)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~ 253 (289)
+...++..+.... +++++++||+++ .|+++
T Consensus 154 -----------------------------------~~~~~i~~~l~~~~~~~~~ii~vSA~~g------------~gi~~ 186 (406)
T TIGR03680 154 -----------------------------------ENYEEIKEFVKGTVAENAPIIPVSALHN------------ANIDA 186 (406)
T ss_pred -----------------------------------HHHHHHHhhhhhcccCCCeEEEEECCCC------------CChHH
Confidence 0111233444433 578999999999 99999
Q ss_pred HHHHHHHhc
Q 040295 254 LYGALSAHM 262 (289)
Q Consensus 254 l~~~L~~~~ 262 (289)
++++|...+
T Consensus 187 L~e~L~~~l 195 (406)
T TIGR03680 187 LLEAIEKFI 195 (406)
T ss_pred HHHHHHHhC
Confidence 999998754
No 201
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.61 E-value=1.8e-14 Score=145.60 Aligned_cols=155 Identities=20% Similarity=0.190 Sum_probs=105.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC---CCCCC--CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVN---FEDAS--DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~---~~~~~--~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
-|+++|+.++|||||+++|.+.+ +.++. ..|+...+...... ++ ..+.+|||||++.|.......+.++|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DG--RVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CC--cEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 48899999999999999998633 33333 22332222222211 22 3479999999999966666678899999
Q ss_pred EEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
++|+|+++ +++.+.+. .+...+.+++|||.||+|+.+. ..+
T Consensus 79 lLVVda~eg~~~qT~ehl~----il~~lgi~~iIVVlNKiDlv~~--------~~~------------------------ 122 (614)
T PRK10512 79 LLVVACDDGVMAQTREHLA----ILQLTGNPMLTVALTKADRVDE--------ARI------------------------ 122 (614)
T ss_pred EEEEECCCCCcHHHHHHHH----HHHHcCCCeEEEEEECCccCCH--------HHH------------------------
Confidence 99999986 55555553 2333444567889999999631 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcC---CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHR---IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~---~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
......+..++...+ +++|++||++| .|++++++.|....-+
T Consensus 123 --------~~v~~ei~~~l~~~~~~~~~ii~VSA~tG------------~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 123 --------AEVRRQVKAVLREYGFAEAKLFVTAATEG------------RGIDALREHLLQLPER 167 (614)
T ss_pred --------HHHHHHHHHHHHhcCCCCCcEEEEeCCCC------------CCCHHHHHHHHHhhcc
Confidence 122233566666555 57999999999 9999999999875433
No 202
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.61 E-value=2.1e-14 Score=144.30 Aligned_cols=114 Identities=15% Similarity=0.196 Sum_probs=80.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCcceEEeeEEeec--Ccce-----E-----EEEEEEcCCchhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA----SDSSSELLVNGWTINT--KYYT-----A-----DVSLWMAHLHEEF 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----~~~t~~~~~~~~~i~~--~~~~-----~-----~l~I~Dt~G~e~~ 111 (289)
+...|+|+|++++|||||+++|.+..+... ++++.+..+.+..... .+.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 446799999999999999999987654322 2234443333221110 0111 1 2689999999999
Q ss_pred hccccccccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 112 SIRSLPISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..++...++.+|++|+|+|+++ +++++.+..+ .. ...|+++++||+|+.+
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~-~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR-RKTPFVVAANKIDRIP 137 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH-cCCCEEEEEECcCCch
Confidence 9888778889999999999997 7777776533 22 2347899999999864
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.61 E-value=4.7e-15 Score=143.82 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=74.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCCcceEEeeEEeecCcc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED-------------------------------ASDSSSELLVNGWTINTKYY 96 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~~~ 96 (289)
+.++|+++|+.++|||||+++|+...-.. +..+....+.....+.. .
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~--~ 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET--D 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec--C
Confidence 44789999999999999999998432110 00111111221222222 3
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.+.+.+|||||++.|.......++.+|++|+|+|++++..+.... .++......+.+++++|+||+|+..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 467999999999988654445577899999999998732222211 2222333444457899999999963
No 204
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.60 E-value=1.4e-14 Score=149.37 Aligned_cols=153 Identities=16% Similarity=0.063 Sum_probs=106.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc----------ccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS----------LPI 118 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~----------~~~ 118 (289)
.++|+++|.+|||||||+|++.+.+.... ...+.+.............++.+|||||+..+.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47899999999999999999998765322 223333322222223334578999999998775421 123
Q ss_pred c--cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 119 S--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 119 ~--~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
+ ..+|++|+|+|.++.+.- ..|...+... ..|+++|.||+|+..... +
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~-giPvIvVlNK~Dl~~~~~--------i------------------ 130 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL-GIPCIVALNMLDIAEKQN--------I------------------ 130 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc-CCCEEEEEEchhhhhccC--------c------------------
Confidence 2 478999999999875442 2344444443 348999999999853211 1
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
....+.+.+..|++++++||+++ .|++++++.+....
T Consensus 131 -----------------~id~~~L~~~LG~pVvpiSA~~g------------~GIdeL~~~I~~~~ 167 (772)
T PRK09554 131 -----------------RIDIDALSARLGCPVIPLVSTRG------------RGIEALKLAIDRHQ 167 (772)
T ss_pred -----------------HHHHHHHHHHhCCCEEEEEeecC------------CCHHHHHHHHHHhh
Confidence 11256777888999999999999 99999999987753
No 205
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.60 E-value=4.8e-15 Score=121.44 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=96.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+++|-.++|||||++++.+.+. ....+|.|+....+.... ++++.+||.+|+...+..|..|+.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~~g---~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEYDG---TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEeecC---cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 4569999999999999999999988774 456778887665544332 478999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHh-hhc--CCCeEEEEeeCCCCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSI-DLQ--KFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i-~~~--~~~~iivvgnK~Dl~~~~~ 169 (289)
+|.|.+|..-|+++..-+-.+ ... ..-|+++.+||.|++...+
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~ 136 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK 136 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc
Confidence 999999999999887544444 222 2238999999999986554
No 206
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.60 E-value=1.2e-14 Score=125.60 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=104.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------CCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA--------------------SDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~--------------------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
...|+++|+.++|||||+.+|+....... ...|....... .........+.++||||+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~--~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFIS--FEKNENNRKITLIDTPGH 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEE--EEBTESSEEEEEEEESSS
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccc--ccccccccceeecccccc
Confidence 36899999999999999999996442110 12222222222 221244567999999999
Q ss_pred hhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCC
Q 040295 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADP 188 (289)
Q Consensus 109 e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~ 188 (289)
..|.......++.+|++|+|+|..+....... ..+..+...+. |+++|.||+|+.. .+..+.+
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~~~-p~ivvlNK~D~~~-----~~~~~~~---------- 143 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILRELGI-PIIVVLNKMDLIE-----KELEEII---------- 143 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHTT--SEEEEEETCTSSH-----HHHHHHH----------
T ss_pred cceeecccceecccccceeeeecccccccccc-ccccccccccc-ceEEeeeeccchh-----hhHHHHH----------
Confidence 98877666678899999999999865333222 22333444444 5888999999961 1111111
Q ss_pred cccCCCCCcccCCCCCCCCCCcHHHHHHHH-HHHHHc------CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 189 DFCQSGISETEGSSLLGDEEPSWEIRRSCL-EWCTEH------RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
++.. .+.+.. .++++.+||++| .|++++++.|.+.
T Consensus 144 --------------------------~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g------------~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 144 --------------------------EEIKEKLLKEYGENGEEIVPVIPISALTG------------DGIDELLEALVEL 185 (188)
T ss_dssp --------------------------HHHHHHHHHHTTSTTTSTEEEEEEBTTTT------------BTHHHHHHHHHHH
T ss_pred --------------------------HHHHHHhccccccCccccceEEEEecCCC------------CCHHHHHHHHHHh
Confidence 1122 344333 257999999999 9999999999875
Q ss_pred c
Q 040295 262 M 262 (289)
Q Consensus 262 ~ 262 (289)
+
T Consensus 186 ~ 186 (188)
T PF00009_consen 186 L 186 (188)
T ss_dssp S
T ss_pred C
Confidence 4
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.59 E-value=2e-14 Score=139.03 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=101.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCC--C-CC--CCCCcceEEeeEEee----------------cC------cceEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNF--E-DA--SDSSSELLVNGWTIN----------------TK------YYTAD 99 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~--~-~~--~~~t~~~~~~~~~i~----------------~~------~~~~~ 99 (289)
.+.++|+++|+.++|||||+.+|.+... . ++ ...|....+....+. .+ .....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4558999999999999999999965311 1 11 112222111111110 00 11257
Q ss_pred EEEEEcCCchhhhccccccccCccEEEEEEeCCC----HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHH
Q 040295 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLND----LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYR 175 (289)
Q Consensus 100 l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~----~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~ 175 (289)
+.+|||||++.|..........+|++++|+|+++ +.+++.+.. +...+.+++++|+||+|+.+.. ..
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~~i~~iiVVlNK~Dl~~~~-----~~ 157 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDIIGIKNIVIVQNKIDLVSKE-----RA 157 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcCCCcEEEEEEeeccccch-----hH
Confidence 8999999999886533333456799999999995 344444432 2334445788899999996421 00
Q ss_pred HHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCchhHH
Q 040295 176 RRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDSQGVE 252 (289)
Q Consensus 176 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~~~i~ 252 (289)
. ...+.+..++..+ +++++++||+++ .|++
T Consensus 158 ~-----------------------------------~~~~~i~~~l~~~~~~~~~ii~vSA~~g------------~gI~ 190 (411)
T PRK04000 158 L-----------------------------------ENYEQIKEFVKGTVAENAPIIPVSALHK------------VNID 190 (411)
T ss_pred H-----------------------------------HHHHHHHHHhccccCCCCeEEEEECCCC------------cCHH
Confidence 0 0111234444432 578999999999 9999
Q ss_pred HHHHHHHHhcc
Q 040295 253 RLYGALSAHMW 263 (289)
Q Consensus 253 ~l~~~L~~~~~ 263 (289)
++++.|...+.
T Consensus 191 ~L~~~L~~~l~ 201 (411)
T PRK04000 191 ALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhCC
Confidence 99999988654
No 208
>COG1159 Era GTPase [General function prediction only]
Probab=99.58 E-value=3e-14 Score=130.04 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=110.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc--------cccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDAS--DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI--------RSLPIS 119 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~--------~~~~~~ 119 (289)
-.|+|+|.||||||||+|++++.+....+ .+|+........... ..++.+.||||...-+. .....+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~---~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD---NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC---CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45999999999999999999999875432 233333333333222 46799999999643222 123447
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHH-HHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHW-VPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~-~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
..+|+++||.|.++. +..-..| ++.++. ...|+|++.||+|...... ....+
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~-~~~pvil~iNKID~~~~~~----~l~~~-------------------- 136 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK-TKTPVILVVNKIDKVKPKT----VLLKL-------------------- 136 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh-cCCCeEEEEEccccCCcHH----HHHHH--------------------
Confidence 789999999999864 2222233 334444 3348999999999975311 00111
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCCCCCC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKITE 276 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~~~ 276 (289)
.........+ +.+++||++| .|++.+.+.+...+-++-.+...+..+.
T Consensus 137 ------------------~~~~~~~~~f~~ivpiSA~~g------------~n~~~L~~~i~~~Lpeg~~~yp~d~itD 185 (298)
T COG1159 137 ------------------IAFLKKLLPFKEIVPISALKG------------DNVDTLLEIIKEYLPEGPWYYPEDQITD 185 (298)
T ss_pred ------------------HHHHHhhCCcceEEEeecccc------------CCHHHHHHHHHHhCCCCCCcCChhhccC
Confidence 3334444445 6999999999 9999999999998877765555444443
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.58 E-value=5.8e-14 Score=141.37 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=82.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CCCcceEEeeEEeecCcceEEEEEEEcCCchhhh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS--VNFEDAS------------DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~ 112 (289)
...-+|+|+|+.++|||||+++|+. +.|.... ..+.+..+........+..+++.+|||||+..|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3446899999999999999999997 3332211 2234444433333334456789999999999998
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..+..+++.+|++|+|+|+++....+.. .++......+. |+|+|.||+|+..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~~gi-p~IVviNKiD~~~ 134 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFAYGL-KPIVVINKVDRPG 134 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHHcCC-CEEEEEECcCCCC
Confidence 8888899999999999999875333322 22333333333 5688999999853
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.56 E-value=4.1e-14 Score=117.48 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=96.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc----hhhhccccccccCccEEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH----EEFSIRSLPISDQLTALV 126 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~----e~~~~~~~~~~~~ad~vI 126 (289)
||+++|+.|||||||+++|.+.+. .+..|....|.. .+.||||. ..|+...-.....||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988775 344444433322 34688884 234333335566899999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
+|.|.+++.+. +=+.+...-.+|+|-|.+|+|+..+ ...+
T Consensus 69 ll~dat~~~~~-----~pP~fa~~f~~pvIGVITK~Dl~~~-------~~~i---------------------------- 108 (143)
T PF10662_consen 69 LLQDATEPRSV-----FPPGFASMFNKPVIGVITKIDLPSD-------DANI---------------------------- 108 (143)
T ss_pred EEecCCCCCcc-----CCchhhcccCCCEEEEEECccCccc-------hhhH----------------------------
Confidence 99999976432 1122323334589999999999632 1111
Q ss_pred CCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHH
Q 040295 207 EEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALS 259 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~ 259 (289)
+.+.+|++..|+ +.|++|+.+| +||+++.++|.
T Consensus 109 --------~~a~~~L~~aG~~~if~vS~~~~------------eGi~eL~~~L~ 142 (143)
T PF10662_consen 109 --------ERAKKWLKNAGVKEIFEVSAVTG------------EGIEELKDYLE 142 (143)
T ss_pred --------HHHHHHHHHcCCCCeEEEECCCC------------cCHHHHHHHHh
Confidence 237899999998 4899999999 99999999874
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.56 E-value=4.9e-14 Score=141.83 Aligned_cols=170 Identities=14% Similarity=0.179 Sum_probs=107.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC--CCCCCC------------CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccc
Q 040295 51 GILIIGSSNVGKRTILSRLLSV--NFEDAS------------DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSL 116 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~--~~~~~~------------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~ 116 (289)
.|+|+|+.++|||||+.+|+.. .+.... ....+.++........+..+++.+|||||+..|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 5999999999999999999863 332211 01112222222222233357899999999999988778
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
.+++.+|++|+|+|.++. .+.....|+..+...+. |+|+|+||+|+..... . .+
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~i-p~IVviNKiD~~~a~~-----~-~v------------------ 136 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELGL-KPIVVINKIDRPSARP-----D-EV------------------ 136 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCCC-CEEEEEECCCCCCcCH-----H-HH------------------
Confidence 889999999999999863 23334456666655444 6788999999853211 0 00
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHH-------HHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWC-------TEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..++..+. ....++++.+||++|.--..+ .....|+..+|+.++..+.+.
T Consensus 137 -----------------~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~--~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 137 -----------------VDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDL--DDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred -----------------HHHHHHHHHhhccccccccCcEEechhhcCcccccC--cccccCHHHHHHHHHHhCCCC
Confidence 11122222 123578999999998110000 112248999999999877544
No 212
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4e-15 Score=125.61 Aligned_cols=159 Identities=17% Similarity=0.120 Sum_probs=118.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNF-------EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~-------~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
+-|+|+|..++|||||+.+....-. .....+|.+.......+. ...+.+||..||+..++++..||..+
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHHh
Confidence 6699999999999999998753211 123566777666555544 24689999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
|++|+++|.++++.|+....-+..+..+ ..-|+++.+||.|+... ..+
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--------~~~--------------------- 144 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--------MEA--------------------- 144 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--------hhH---------------------
Confidence 9999999999999999988776666433 33389999999999432 111
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+++. ....+... .+++..+||.+| +||++-..++++.+-.+
T Consensus 145 -----------~El~~-~~~~~e~~~~rd~~~~pvSal~g------------egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 145 -----------AELDG-VFGLAELIPRRDNPFQPVSALTG------------EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred -----------HHHHH-HhhhhhhcCCccCccccchhhhc------------ccHHHHHHHHHHHHhhc
Confidence 01111 11112222 356889999999 99999999999987666
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.54 E-value=1.9e-13 Score=119.55 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=74.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCC------CCC--------CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFE------DAS--------DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR 114 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~------~~~--------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~ 114 (289)
.++|+++|..++|||||+++|+..... ..+ ...-+................+.+.||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 378999999999999999999864100 000 001111111112222233456889999999888665
Q ss_pred ccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 115 SLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 115 ~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
....+..+|++++|+|.+..-.-+ ....+..+...+.+++|+|.||+|+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 556678899999999998642211 22233345555555588899999996
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.54 E-value=1.4e-13 Score=123.80 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=111.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--------CC--------CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFED--------AS--------DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR 114 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~--------~~--------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~ 114 (289)
.|+++|+.|+|||||+++++...-.. .. ....+..+............++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 48999999999999999998642110 00 001111111111122233567999999999998877
Q ss_pred ccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccC----CCCCcc
Q 040295 115 SLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREES----SADPDF 190 (289)
Q Consensus 115 ~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~----~~~~~~ 190 (289)
...+++.+|++|+|+|+++.... ....|...+... ..|+++++||+|+.... . .+....+...-.. ...|..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~-~~P~iivvNK~D~~~a~-~-~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL-NIPTIIFVNKIDRAGAD-L-EKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc-CCCEEEEEECccccCCC-H-HHHHHHHHHHHCCCeEEEECCcE
Confidence 77889999999999999976543 233444545444 34788899999996422 1 1111111110000 012211
Q ss_pred cCCCCCc-c-----------cCC-----CCC-CCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhH
Q 040295 191 CQSGISE-T-----------EGS-----SLL-GDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGV 251 (289)
Q Consensus 191 ~~~~~~~-~-----------~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i 251 (289)
. ..+.. . |.. .+. ..+-..+++......-..... +|.+..||.++ .|+
T Consensus 157 ~-~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~------------~Gv 223 (237)
T cd04168 157 A-PNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG------------IGI 223 (237)
T ss_pred e-eeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCC------------cCH
Confidence 0 00100 0 000 001 112233455555544444444 48888999999 999
Q ss_pred HHHHHHHHHhc
Q 040295 252 ERLYGALSAHM 262 (289)
Q Consensus 252 ~~l~~~L~~~~ 262 (289)
.++++.+.+.+
T Consensus 224 ~~ll~~~~~~~ 234 (237)
T cd04168 224 EELLEGITKLF 234 (237)
T ss_pred HHHHHHHHHhc
Confidence 99999998854
No 215
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.53 E-value=5.8e-13 Score=119.37 Aligned_cols=168 Identities=14% Similarity=0.195 Sum_probs=110.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc-----cccccccCc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI-----RSLPISDQL 122 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~-----~~~~~~~~a 122 (289)
||+++|++++||||+.+.+..+-.+.+ ..+|...+........ .+.+++||.|||..+-. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~---~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS---FLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT---SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC---CcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 799999999999999988876543222 2345554433332222 35799999999975532 335668999
Q ss_pred cEEEEEEeCCCHhhHHHH---HHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 123 TALVMVFNLNDLSTLDAL---KHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l---~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
.++|+|+|+...+-.+.+ ...+..+...++. .+.|..+|+|+++ +..|.-
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~------~~~r~~-------------------- 131 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS------EDEREE-------------------- 131 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-------HHHHHH--------------------
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC------HHHHHH--------------------
Confidence 999999999844444444 4445555555665 7888899999975 233333
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcC---CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHR---IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
......+.+...+...+ +.++-||-.+ +.+-+.+..+++.+.|+...-+
T Consensus 132 ----------~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-------------~Sly~A~S~Ivq~LiP~~~~le 183 (232)
T PF04670_consen 132 ----------IFRDIQQRIRDELEDLGIEDITFFLTSIWD-------------ESLYEAWSKIVQKLIPNLSTLE 183 (232)
T ss_dssp ----------HHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-------------THHHHHHHHHHHTTSTTHCCCC
T ss_pred ----------HHHHHHHHHHHHhhhccccceEEEeccCcC-------------cHHHHHHHHHHHHHcccHHHHH
Confidence 34455666777777777 7788888876 6999999999999998875443
No 216
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.3e-14 Score=117.79 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=115.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
...+|+++|-.|+|||+++.++.-++. ....||++...... .+++.++++||..|+...+.+|+.|+.+.+++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 457999999999999999999987775 45567777544332 3357789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHH-Hhhhc--CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVP-SIDLQ--KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~-~i~~~--~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|+|.+|.+........+- .++.. ..-.++|++||.|.... ....+....+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-~t~~E~~~~L-------------------------- 144 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-LTRSEVLKML-------------------------- 144 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-hhHHHHHHHh--------------------------
Confidence 999999888776664333 33222 22378889999998421 1111111111
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
...-.++.-+.+|++||.+| +|++..++||.+.+.
T Consensus 145 ------------~l~~Lk~r~~~Iv~tSA~kg------------~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 145 ------------GLQKLKDRIWQIVKTSAVKG------------EGLDPAMDWLQRPLK 179 (182)
T ss_pred ------------ChHHHhhheeEEEeeccccc------------cCCcHHHHHHHHHHh
Confidence 11112222267999999999 999999999988654
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.52 E-value=1.4e-13 Score=122.05 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=70.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC---------------------------C----CCCCCcceEEeeEEeecCcceEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFE---------------------------D----ASDSSSELLVNGWTINTKYYTAD 99 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~---------------------------~----~~~~t~~~~~~~~~i~~~~~~~~ 99 (289)
.|+|+|+.++|||||+.+|+...-. + +.......+.....+. .....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~--~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE--TEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe--eCCeE
Confidence 3899999999999999999742110 0 0011111111111222 23467
Q ss_pred EEEEEcCCchhhhccccccccCccEEEEEEeCCCHh-------hHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLS-------TLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 100 l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~-------S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
+.+|||||+..|.......++.+|++|+|+|+++.. ..+....| ......+.+|+|+|.||+|+.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHcCCCeEEEEEEccccc
Confidence 999999999877655555577899999999998742 11222222 223344446899999999996
No 218
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.52 E-value=2.2e-13 Score=131.12 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC------C-C---------CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV------N-F---------EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~------~-~---------~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~ 110 (289)
.+.++|+++|..++|||||+++|++. . + ..+.......+.....+ ......+.+|||||++.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~--~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY--ETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE--cCCCEEEEEEECCchHH
Confidence 34588999999999999999999742 0 0 00111222222222222 22345789999999998
Q ss_pred hhccccccccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCC
Q 040295 111 FSIRSLPISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSAD 187 (289)
Q Consensus 111 ~~~~~~~~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~ 187 (289)
|..........+|++++|+|+++ +++.+.+ ..+...+.+++|+|.||+|+.+.. + .
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l----~~~~~~gi~~iIvvvNK~Dl~~~~------~--~--------- 146 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTREHI----LLARQVGVPYIVVFLNKCDMVDDE------E--L--------- 146 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHHcCCCEEEEEEEecccCCHH------H--H---------
Confidence 86544444567899999999987 3333332 234444555677789999996421 1 1
Q ss_pred CcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 188 PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+.+..++..++..++ ++++++||+++.--. .+ -..++.+++++|...+
T Consensus 147 ----------------------~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~-~~---~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 147 ----------------------LELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGD-AE---WEAKILELMDAVDEYI 200 (394)
T ss_pred ----------------------HHHHHHHHHHHHHhcCCCccCccEEECccccccccC-Cc---hhHhHHHHHHHHHhcC
Confidence 0112234667777665 689999999871000 00 0025677777776543
No 219
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.51 E-value=6.3e-13 Score=115.91 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=99.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcce-EE--eeEEeecCcceEEEEEEEcCCchhhhccccc-----cccC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSEL-LV--NGWTINTKYYTADVSLWMAHLHEEFSIRSLP-----ISDQ 121 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~-~~--~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~-----~~~~ 121 (289)
+||+|+|++|||||||+|.+.+..+......+.+. .. ....+... ....+.+|||||.......... .+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 68999999999999999999987654322222221 00 00011111 1236899999997533222222 2567
Q ss_pred ccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 122 LTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
+|++++|.+- .|.... .|+..++.. ..|+++|+||+|+..... ...+.
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~-~~~~ilV~nK~D~~~~~~----~~~~~---------------------- 129 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM-GKKFYFVRTKVDRDLSNE----QRSKP---------------------- 129 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh-CCCEEEEEecccchhhhh----hcccc----------------------
Confidence 8888888432 244333 455555554 457899999999953210 00000
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecC--CCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACAS--NVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~--~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+....+.-..++++.+.......+. ++|-+|+. .+ +++.++.+.++..+-..
T Consensus 130 -~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~------------~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 130 -RSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSD------------YDFPKLRETLLKDLPAH 186 (197)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhh------------cChHHHHHHHHHHhhHH
Confidence 0000111234455556666555443 48889998 45 89999999998876543
No 220
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.50 E-value=2.6e-13 Score=130.12 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=103.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCch----------hhhccc-c
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE----------EFSIRS-L 116 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e----------~~~~~~-~ 116 (289)
..+||+|+|.||||||||+|++++++....+ +..|.+.....+......-++.+.||+|.. .|.... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 4699999999999999999999999864322 222322223333333223468899999953 332211 1
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
..+..++.+++|.|.+.+-+-+... ....+.. ...++++|.||+|+..... .
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~-~g~~~vIvvNKWDl~~~~~------~-------------------- 307 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE-AGRGIVIVVNKWDLVEEDE------A-------------------- 307 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH-cCCCeEEEEEccccCCchh------h--------------------
Confidence 2256789999999999875554443 2233333 3347888999999976311 0
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
-.++.++.+.......+ .+.+.+||+++ .++.++|+++....
T Consensus 308 ------------~~~~~k~~i~~~l~~l~~a~i~~iSA~~~------------~~i~~l~~~i~~~~ 350 (444)
T COG1160 308 ------------TMEEFKKKLRRKLPFLDFAPIVFISALTG------------QGLDKLFEAIKEIY 350 (444)
T ss_pred ------------HHHHHHHHHHHHhccccCCeEEEEEecCC------------CChHHHHHHHHHHH
Confidence 11223333444444444 47999999999 99999999887543
No 221
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.50 E-value=2.5e-13 Score=130.52 Aligned_cols=157 Identities=20% Similarity=0.134 Sum_probs=105.0
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc--------
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS-------- 115 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~-------- 115 (289)
-...++|++|+|.||||||||+|.|++.+.... ..+.+.-+...-.+..+| +.+.+.||+|...-....
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHH
Confidence 356679999999999999999999999886422 222233334444555564 458999999974332221
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
...+++||.+++|+|.+.+.+-+... .+. .....+|+++|.||.||.....
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~--~~~~~~~~i~v~NK~DL~~~~~-------------------------- 341 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLA-LIE--LLPKKKPIIVVLNKADLVSKIE-------------------------- 341 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHH-HHH--hcccCCCEEEEEechhcccccc--------------------------
Confidence 23467899999999999862222211 111 2333458999999999964311
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
........+.+++.+||+++ +|++.+.++|.+.+...
T Consensus 342 ---------------------~~~~~~~~~~~~i~iSa~t~------------~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 342 ---------------------LESEKLANGDAIISISAKTG------------EGLDALREAIKQLFGKG 378 (454)
T ss_pred ---------------------cchhhccCCCceEEEEecCc------------cCHHHHHHHHHHHHhhc
Confidence 01111123446899999999 99999999998876554
No 222
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.50 E-value=4.4e-13 Score=123.23 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=75.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCCcceEEeeEEeecCcceEEEEEEEcCCchhh-------
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA----------SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF------- 111 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~------- 111 (289)
.++|+++|.+|+|||||+|+|++..+... ..+|.........+..++..+.+.+|||||...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 47999999999999999999999876543 3445555555566666777889999999994221
Q ss_pred -------------------hcccccccc--CccEEEEEEeCCCHhhHHHH-HHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 112 -------------------SIRSLPISD--QLTALVMVFNLNDLSTLDAL-KHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 112 -------------------~~~~~~~~~--~ad~vIlV~Dv~~~~S~~~l-~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.......+. .+|+++++.+.+.. .+... ...+..+.. ..|+|+|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~--~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK--RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc--cCCEEEEEECCCcCC
Confidence 111113333 36677777776531 22221 223333432 347889999999974
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.49 E-value=6.3e-13 Score=127.99 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=101.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC-------CCC-----C----CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV-------NFE-----D----ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~-------~~~-----~----~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~ 111 (289)
+.++|+++|..++|||||+++|++. .+. + +.......+.....+ ......+.++||||++.|
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~--~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY--ETANRHYAHVDCPGHADY 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE--cCCCcEEEEEECCCHHHH
Confidence 4478999999999999999999862 110 0 011111111111122 222346889999999988
Q ss_pred hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCccc
Q 040295 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC 191 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~ 191 (289)
......-+..+|++++|+|+++...-+ ....+..+...+.+.++++.||+|+... +...
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~gi~~iivvvNK~Dl~~~-----~~~~--------------- 147 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQVGVPYIVVFLNKCDMVDD-----EELL--------------- 147 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHcCCCeEEEEEEecCCcch-----HHHH---------------
Confidence 655555577899999999998642222 1233334444455456678999999631 1111
Q ss_pred CCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCCccc-ccccCCCCchhHHHHHHHHHHhc
Q 040295 192 QSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNVDFD-KCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~~~~-~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
+.+..++..++..++ ++++++||+++.=. ..+..+ .++.+++++|...+
T Consensus 148 -------------------~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~---~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 148 -------------------ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWE---AKILELMDAVDSYI 202 (396)
T ss_pred -------------------HHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCccc---ccHHHHHHHHHhcC
Confidence 112223556666554 57899999997110 001111 36788888887754
No 224
>PRK12736 elongation factor Tu; Reviewed
Probab=99.48 E-value=8.9e-13 Score=126.90 Aligned_cols=167 Identities=16% Similarity=0.091 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE----------------DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~----------------~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~ 111 (289)
+.++|+++|+.++|||||+++|++.... .+.......+.....+ ......+.++||||++.|
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~--~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY--ETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe--cCCCcEEEEEECCCHHHH
Confidence 3478999999999999999999863110 0011112222221222 222346789999999988
Q ss_pred hccccccccCccEEEEEEeCCCH---hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCC
Q 040295 112 SIRSLPISDQLTALVMVFNLNDL---STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADP 188 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~~---~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~ 188 (289)
......-...+|++++|+|.++. .+.+.+ ..+...+.+.+|++.||+|+.... . +
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~----~~~~~~g~~~~IvviNK~D~~~~~-----~---~---------- 146 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQVGVPYLVVFLNKVDLVDDE-----E---L---------- 146 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHH----HHHHHcCCCEEEEEEEecCCcchH-----H---H----------
Confidence 65444446778999999999863 333333 334444555578899999996311 1 1
Q ss_pred cccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 189 DFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+.+..++..++...+ ++++.+||+++.- .....+ .++.++++.|...+-
T Consensus 147 ---------------------~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~-~~~~~~---~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 147 ---------------------LELVEMEVRELLSEYDFPGDDIPVIRGSALKALE-GDPKWE---DAIMELMDAVDEYIP 201 (394)
T ss_pred ---------------------HHHHHHHHHHHHHHhCCCcCCccEEEeecccccc-CCCcch---hhHHHHHHHHHHhCC
Confidence 0112223556665555 4799999999710 000111 368899998887654
No 225
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.47 E-value=6.7e-13 Score=118.34 Aligned_cols=113 Identities=15% Similarity=0.056 Sum_probs=76.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCC----------------C--CCCcceEEeeEEeec------CcceEEEEEEEcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDA----------------S--DSSSELLVNGWTINT------KYYTADVSLWMAH 106 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~----------------~--~~t~~~~~~~~~i~~------~~~~~~l~I~Dt~ 106 (289)
.|+|+|+.++|||||+.+|+...-... . ..|+.....+..... ++..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999985431100 0 001111111111111 1336789999999
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
|++.|......+++.+|++|+|+|++...+.+....|.... ..+ .|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~-~~~-~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQAL-KER-VKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHH-HcC-CCEEEEEECCCcc
Confidence 99999888888899999999999999876665544333322 222 3788899999985
No 226
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=113.47 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=78.7
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCC----------chhhhcc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL----------HEEFSIR 114 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G----------~e~~~~~ 114 (289)
.......|+++|.||||||||||.+++++-......|.|.+....-..... .+.+.|.|| ++.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 344567899999999999999999999875445555555433221122221 278999998 3566666
Q ss_pred ccccccC---ccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 115 SLPISDQ---LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 115 ~~~~~~~---ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
...|++. ..+++++.|..++..-.+. ..++.+...+. |+++|+||+|.++.
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~~i-~~~vv~tK~DKi~~ 150 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLELGI-PVIVVLTKADKLKK 150 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHcCC-CeEEEEEccccCCh
Confidence 6667543 5699999999876444333 22333333222 78889999999874
No 227
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.44 E-value=6.2e-13 Score=127.49 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=97.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcceEEeeEEeecCcceEEEEEEEcCCchhhh-----cc----ccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDAS-DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS-----IR----SLPIS 119 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~-----~~----~~~~~ 119 (289)
..|+|+|.||||||||+|||++....-.. .+.+.-+.........+ ..+.+.||+|.+... .. ....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998753221 11111111111222222 348999999976432 11 12336
Q ss_pred cCccEEEEEEeCCCHhhH--HHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 120 DQLTALVMVFNLNDLSTL--DALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~--~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
..||++|||+|....-+- +.+.+|+ + ...+|+|+|+||+|-... ...
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~L---r-~~~kpviLvvNK~D~~~~--------e~~------------------- 130 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKIL---R-RSKKPVILVVNKIDNLKA--------EEL------------------- 130 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHH---H-hcCCCEEEEEEcccCchh--------hhh-------------------
Confidence 789999999998764222 2333333 3 344589999999998521 111
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
+.+ .-+.|+ +++.+||..| .|+.++++++.+.+
T Consensus 131 -------------------~~e-fyslG~g~~~~ISA~Hg------------~Gi~dLld~v~~~l 164 (444)
T COG1160 131 -------------------AYE-FYSLGFGEPVPISAEHG------------RGIGDLLDAVLELL 164 (444)
T ss_pred -------------------HHH-HHhcCCCCceEeehhhc------------cCHHHHHHHHHhhc
Confidence 222 234576 5899999999 99999999999976
No 228
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.43 E-value=1.8e-12 Score=118.53 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=79.0
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh------------hh
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE------------FS 112 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~------------~~ 112 (289)
...+...|+|+|.||||||||.|.+++.+....+...........-+-.. ...++.++||||.-. +-
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34566889999999999999999999999766544443333322222222 235899999999411 11
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~ 168 (289)
+....-+..||++++|+|++++...-.- ..+..++.....|=|+|-||+|..+..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYSKIPSILVMNKIDKLKQK 201 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHhcCCceeeccchhcchhh
Confidence 1112335679999999999963322111 233444555555667789999998643
No 229
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.42 E-value=4.4e-12 Score=113.21 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=70.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------CC-------cceEEeeEEee-------------cC
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASD----------------SS-------SELLVNGWTIN-------------TK 94 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~----------------~t-------~~~~~~~~~i~-------------~~ 94 (289)
||+++|+.++|||||+++|..+.|..... .| .+.+.....++ ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999876643211 00 00000000000 00
Q ss_pred cceEEEEEEEcCCchhhhccccccc--cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 95 YYTADVSLWMAHLHEEFSIRSLPIS--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 95 ~~~~~l~I~Dt~G~e~~~~~~~~~~--~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.....+.+.||||++.|.......+ ..+|++++|+|......- .-..++..+...+. |+++|.||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~~i-p~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALALNI-PVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHcCC-CEEEEEECccccC
Confidence 1134688999999998854332223 368999999998765332 22234444444443 6888999999964
No 230
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.40 E-value=5.4e-12 Score=123.33 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=97.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCCcceEEeeEEeecCcce
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNF--E-----------------------------DASDSSSELLVNGWTINTKYYT 97 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~--~-----------------------------~~~~~t~~~~~~~~~i~~~~~~ 97 (289)
.+.|+++|+.++|||||+.+|+...- . ++.......+.... ......
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~--~~~~~~ 84 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW--KFETTK 84 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE--EecCCC
Confidence 47799999999999999999874211 0 00111111111111 122334
Q ss_pred EEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHH-------HHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCc
Q 040295 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLD-------ALKHWVPSIDLQKFEILLCIGNKVDLLPGHPV 170 (289)
Q Consensus 98 ~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~-------~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~ 170 (289)
..+.+.||||++.|-......+..+|++|+|+|+++ ..|+ .....+......+.+++|++.||+|+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~--- 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP--- 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch---
Confidence 578999999999998777788899999999999986 3332 22333333445566678989999998521
Q ss_pred hhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCC
Q 040295 171 HAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNV 236 (289)
Q Consensus 171 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~ 236 (289)
++.+. ..+++..+++.++...| ++|+++||++|
T Consensus 161 --~~~~~-------------------------------~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G 198 (447)
T PLN00043 161 --KYSKA-------------------------------RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEG 198 (447)
T ss_pred --hhhHH-------------------------------HHHHHHHHHHHHHHHcCCCcccceEEEEecccc
Confidence 01000 12344455788888776 56999999999
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.40 E-value=3.7e-12 Score=116.57 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=74.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CCC---------CCC----------cceEEeeEEeecCcceEEEEEEEcCCchh
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFE-DAS---------DSS----------SELLVNGWTINTKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~-~~~---------~~t----------~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~ 110 (289)
.|+|+|++|+|||||+++++...-. ... ..+ -+..+............++.+|||||+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 5999999999999999999853211 000 000 01111111122233457899999999998
Q ss_pred hhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 111 ~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|.......++.+|++|+|+|.++..... ...++..... ...|+++++||+|+..
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-~~~P~iivvNK~D~~~ 137 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-cCCCEEEEEECCccCC
Confidence 8765666788999999999998653322 2233333333 3447899999999854
No 232
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.39 E-value=3.9e-12 Score=122.92 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC-------------CCC--------------------CcceEEeeEEeecCcc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA-------------SDS--------------------SSELLVNGWTINTKYY 96 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~-------------~~~--------------------t~~~~~~~~~i~~~~~ 96 (289)
++|+|+|+.++|||||+.+|+...-... ... ....+.....+.. .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 4899999999999999999975431110 000 0111111111112 2
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..++.++||||++.|......-+..+|++|+|+|.+....-+....|. .+...+.+++++|.||+|+..
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcCCCcEEEEEEeccccc
Confidence 357899999999988654445678899999999997542211111121 223334457888999999963
No 233
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.38 E-value=7.1e-13 Score=114.41 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccc---cccCccEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLP---ISDQLTALV 126 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~---~~~~ad~vI 126 (289)
-.|+|+|++|+|||+|+.+|..+.+...+++. .... ...+ .....-.+.+.|+||+++.+..... +...+.++|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 46999999999999999999999766554443 2221 1111 1222335899999999988763333 477899999
Q ss_pred EEEeCC-CHhhHHHHHHHHHHh----h-hcCCCeEEEEeeCCCCCCCC
Q 040295 127 MVFNLN-DLSTLDALKHWVPSI----D-LQKFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 127 lV~Dv~-~~~S~~~l~~~~~~i----~-~~~~~~iivvgnK~Dl~~~~ 168 (289)
||.|.+ ....+..+.+++-.+ . ..+.+|+++++||.|+....
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999997 455666666555544 2 12444999999999997643
No 234
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=5.4e-13 Score=105.87 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=66.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASD-SSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
+||+++|+.|+|||+|+.++....|...+. +|.+ +..+...+.+.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777754333 3332 333344667789999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC-C-CeEEEEeeCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK-F-EILLCIGNKVDL 164 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~-~-~~iivvgnK~Dl 164 (289)
|+.+..++++.+ |...+.... . .|++++|||.|+
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl 89 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVL 89 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhh
Confidence 999999999876 877765442 2 378889999998
No 235
>PRK13351 elongation factor G; Reviewed
Probab=99.37 E-value=5.3e-12 Score=129.44 Aligned_cols=115 Identities=19% Similarity=0.108 Sum_probs=81.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCC--------C------------CCCCCcceEEeeEEeecCcceEEEEEEEcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFE--------D------------ASDSSSELLVNGWTINTKYYTADVSLWMAH 106 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~--------~------------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~ 106 (289)
+...+|+|+|+.++|||||+++|+...-. . .+..|+..... .+.. ....+.+||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~--~~~~--~~~~i~liDtP 81 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAAT--SCDW--DNHRINLIDTP 81 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceE--EEEE--CCEEEEEEECC
Confidence 34578999999999999999999853210 0 01112222111 2222 24679999999
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
|+..|......+++.+|++|+|+|.++....+....|. .+... ..|+++|+||+|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~-~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY-GIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc-CCCEEEEEECCCCCCC
Confidence 99999887788899999999999999887776665553 33333 3478889999999753
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.37 E-value=1.3e-11 Score=119.43 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=74.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC------C--------CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED------A--------SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~------~--------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~ 113 (289)
+.++|+++|++++|||||+++|++..-.. . ....-+................+.+.||||+..|..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 34789999999999999999999642100 0 000112111111111222334678999999988865
Q ss_pred cccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 114 RSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
....-+..+|++++|+|......- .-...+..+...+.+.+|++.||+|+.+
T Consensus 91 ~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 91 NMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 555567789999999999854221 1222333344445545888999999964
No 237
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.36 E-value=1.7e-12 Score=118.34 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=74.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCC------CC------------CcceEEeeEEeecCcceEEEEEEEcCCchhhh
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDAS------DS------------SSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~------~~------------t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~ 112 (289)
+|+|+|++|+|||||+++++........ .. ..........+.. ..+.+.+|||||+..|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 4899999999999999999753211100 00 0011111112222 24578999999998887
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
......++.+|++|+|+|.+..........|. .+... ..|+++|+||+|+..
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~-~~p~iivvNK~D~~~ 130 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA-GIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc-CCCEEEEEECCccCC
Confidence 76777889999999999999765554444443 23333 347888999999853
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.36 E-value=8.9e-12 Score=122.65 Aligned_cols=117 Identities=16% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-------------CCCC--------------------cceEEeeEEeec
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDA-------------SDSS--------------------SELLVNGWTINT 93 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-------------~~~t--------------------~~~~~~~~~i~~ 93 (289)
...++|+|+|+.++|||||+.+|+...-... ...+ ...+......
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-- 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-- 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe--
Confidence 3448999999999999999999986532110 0000 1111111111
Q ss_pred CcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 94 KYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 94 ~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
......+.++||||++.|......-+..+|++|+|+|.+....-.....| ..+...+.+++|+|.||+|+..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhCCCceEEEEEeecccc
Confidence 22245788999999998854443446889999999999754211111111 1122233457889999999963
No 239
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.35 E-value=1.3e-11 Score=115.63 Aligned_cols=81 Identities=17% Similarity=0.040 Sum_probs=55.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC------CCCCCcceEEeeEEee---------------cCc-ceEEEEEEEcCCc-
Q 040295 52 ILIIGSSNVGKRTILSRLLSVNFED------ASDSSSELLVNGWTIN---------------TKY-YTADVSLWMAHLH- 108 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~~~~~------~~~~t~~~~~~~~~i~---------------~~~-~~~~l~I~Dt~G~- 108 (289)
|+|+|.+|||||||+++|++..+.. ...++.+..+...... .++ ..+.+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999887531 1233333333211000 112 3467999999997
Q ss_pred ---hhhhcccccc---ccCccEEEEEEeCC
Q 040295 109 ---EEFSIRSLPI---SDQLTALVMVFNLN 132 (289)
Q Consensus 109 ---e~~~~~~~~~---~~~ad~vIlV~Dv~ 132 (289)
+.+..+.+.+ ++.||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5555555554 88999999999997
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.34 E-value=3.1e-11 Score=116.34 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE----------------DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~----------------~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~ 111 (289)
+.++|+++|..++|||||+++|++.... ++.......+.....+ ......+.+.||||+..|
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~--~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY--ETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE--cCCCeEEEEEECCCHHHH
Confidence 4478999999999999999999873100 0011111112211122 222356789999999888
Q ss_pred hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.......+..+|++++|+|......-+ ...++..+...+.+.+|++.||+|+.+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 665556678899999999998642222 223334444444444556899999963
No 241
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.34 E-value=1.6e-11 Score=97.53 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=64.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh----------hhccccc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFED---ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE----------FSIRSLP 117 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----------~~~~~~~ 117 (289)
+|+|+|.+|||||||+|.|++.+... ....|....+....+ . ...+.++||||... +......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~--~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY--N--NKKFILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE--T--TEEEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee--c--eeeEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 69999999999999999999864321 122222222222222 3 23467999999631 1122223
Q ss_pred cccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeC
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNK 161 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK 161 (289)
+..+|++|+|+|.+++.. +....++..++ ..+|+++|.||
T Consensus 77 -~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 77 -ISKSDLIIYVVDASNPIT-EDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp -HCTESEEEEEEETTSHSH-HHHHHHHHHHH--TTSEEEEEEES
T ss_pred -HHHCCEEEEEEECCCCCC-HHHHHHHHHHh--cCCCEEEEEcC
Confidence 478999999999887422 22233334443 56689999998
No 242
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.34 E-value=1.5e-11 Score=122.45 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=76.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC--CCCC------------------CCCCcceEEeeEEeecCcceEEEEEEEcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN--FEDA------------------SDSSSELLVNGWTINTKYYTADVSLWMAH 106 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~--~~~~------------------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~ 106 (289)
...-+|+|+|++++|||||+++|+... .... ....-+..+...........+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 455689999999999999999997411 1000 00001111111112223335679999999
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|++.|......+++.+|++|+|+|.++...- ....++..... ...|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~-~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL-RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh-cCCCEEEEEECCcccc
Confidence 9999877666778999999999999865322 22333333333 3447999999999854
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.33 E-value=2.1e-11 Score=120.05 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=75.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC------CCC----------CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN------FED----------ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~------~~~----------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~ 110 (289)
.+.++|+++|+.++|||||+++|+... ... +.......+.....+..+ ...+.++||||++.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCHHH
Confidence 345789999999999999999999521 100 111111111111122222 34688999999998
Q ss_pred hhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 111 ~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|-.....-+..+|++++|+|..+...-+. ..++..+...+.+.+|++.||+|+.+
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEecccccC
Confidence 86655555778999999999886532222 23334455555555888999999964
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=125.84 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=71.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC-------------CCCC-cceE-------------------EeeEEeecCc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA-------------SDSS-SELL-------------------VNGWTINTKY 95 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-------------~~~t-~~~~-------------------~~~~~i~~~~ 95 (289)
.++|+|+|++++|||||+++|+...-... ...| .... .....+. .
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~--~ 101 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA--T 101 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc--c
Confidence 37899999999999999999997542111 0000 0001 0001111 1
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
...++.++||||++.|.......+..+|++++|+|++....-+... ....+...+.+++|||.||+|+.+
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHhCCCeEEEEEEeccccc
Confidence 2346789999999988654445578899999999997542211111 111233334467889999999963
No 245
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.29 E-value=6.5e-11 Score=118.32 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=110.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc------cccc--c
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS------LPIS--D 120 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~------~~~~--~ 120 (289)
..+|+++|.||||||||+|++++.+-....-+...++...-.....++ ++++.|.||...+.... +.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 467999999999999999999998765555566666655555555544 48999999976554332 3342 3
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
.+|++|-|.|.++.+.--.+-- ++...+. |++++.|++|..+ ++-+
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltl---QLlE~g~-p~ilaLNm~D~A~--------~~Gi---------------------- 126 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTL---QLLELGI-PMILALNMIDEAK--------KRGI---------------------- 126 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHH---HHHHcCC-CeEEEeccHhhHH--------hcCC----------------------
Confidence 5799999999998743322221 2222222 6999999999953 2222
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
..+ ...+.+..|+|.++++|++| .|++++...+.+..-.
T Consensus 127 ----~ID---------~~~L~~~LGvPVv~tvA~~g------------~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 127 ----RID---------IEKLSKLLGVPVVPTVAKRG------------EGLEELKRAIIELAES 165 (653)
T ss_pred ----ccc---------HHHHHHHhCCCEEEEEeecC------------CCHHHHHHHHHHhccc
Confidence 111 67888899999999999999 9999999999874433
No 246
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=9.6e-11 Score=108.36 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=81.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCch--hhhccc----c---c
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHE--EFSIRS----L---P 117 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e--~~~~~~----~---~ 117 (289)
....|+|+|.||||||||++.+.+.+... .|..|+.--+..+- ......+++.||||.= .+...+ + .
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf---e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF---ERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee---ecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 45789999999999999999999988643 35555443322221 2223579999999951 111111 1 1
Q ss_pred cccCccEEEEEEeCCC--HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 118 ISDQLTALVMVFNLND--LSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~--~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
.-.-+++++|+||.+. .-+.+....++..++..-..|+++|.||+|+.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 1123679999999974 56667778888999887778999999999995
No 247
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.26 E-value=1.3e-10 Score=119.31 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=78.4
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCC-C---C--------------CCCcceEEeeEEeecCcceEEEEEEEcCC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFED-A---S--------------DSSSELLVNGWTINTKYYTADVSLWMAHL 107 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~---~--------------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G 107 (289)
.+..-+|+|+|+.++|||||+++|+...-.. . . ...+........+..+ ..++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence 3445689999999999999999997422110 0 0 1111111222222222 46799999999
Q ss_pred chhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 108 ~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+..|.......++.+|++|+|+|.++....+....|. .+...+ .|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~~~-~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWR-QANRYE-VPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHH-HHHHcC-CCEEEEEECCCCCC
Confidence 9988776677889999999999998765554443332 343333 46788999999975
No 248
>COG2262 HflX GTPases [General function prediction only]
Probab=99.25 E-value=1.4e-10 Score=110.01 Aligned_cols=153 Identities=17% Similarity=0.126 Sum_probs=105.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCcceEEeeEEeecCcceEEEEEEEcCCc---------hhhhcccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED--ASDSSSELLVNGWTINTKYYTADVSLWMAHLH---------EEFSIRSL 116 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~---------e~~~~~~~ 116 (289)
..+.|.++|-.|+|||||+|++.+..... ..-.|.........+.. ...+.+.||.|- +.|++-.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~---g~~vlLtDTVGFI~~LP~~LV~AFksTL- 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD---GRKVLLTDTVGFIRDLPHPLVEAFKSTL- 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC---CceEEEecCccCcccCChHHHHHHHHHH-
Confidence 34789999999999999999999876542 23445555544444443 235888999983 4555433
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhc--CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ--KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~--~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
.-...+|.++.|.|.++|...+.+..-..-+... ...|+|+|.||+|+..... .+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-------~~---------------- 323 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-------IL---------------- 323 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-------hh----------------
Confidence 2356799999999999997777776444444333 2258999999999875310 11
Q ss_pred CCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+..... ..+.+||+++ +|++.+++.|...+-
T Consensus 324 -----------------------~~~~~~~~-~~v~iSA~~~------------~gl~~L~~~i~~~l~ 356 (411)
T COG2262 324 -----------------------AELERGSP-NPVFISAKTG------------EGLDLLRERIIELLS 356 (411)
T ss_pred -----------------------hhhhhcCC-CeEEEEeccC------------cCHHHHHHHHHHHhh
Confidence 11111112 4789999999 999999999988664
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.24 E-value=7.1e-11 Score=108.31 Aligned_cols=112 Identities=18% Similarity=0.071 Sum_probs=72.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFE------------------DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS 112 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~------------------~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~ 112 (289)
.|+|+|++|+|||||+++++...-. .+.............+.. ...++.+|||||+..|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 4899999999999999999742110 000111111111112222 24678999999999887
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
......++.+|++|+|.|..+...-.. ...+..+... ..|++++.||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~-~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY-NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc-CCCEEEEEECCCCCC
Confidence 777788999999999999976432221 1222333333 347888999999853
No 250
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.4e-10 Score=113.15 Aligned_cols=156 Identities=17% Similarity=0.277 Sum_probs=106.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA----SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.+=|+|+|+-.-|||||+..+-+.+.... .++.++... ..++. ...-.+.+.||||++.|..+...-.+-+|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~--v~~~~-~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQ--VPLDV-IKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEE--EEecc-CCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 35699999999999999999987775432 233333222 22211 122358999999999999988877888999
Q ss_pred EEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|||.|+++ |++.+.+.. .+. ...|++++.||+|..+..+ . ....++ ..+|+.
T Consensus 82 aILVVa~dDGv~pQTiEAI~h----ak~-a~vP~iVAiNKiDk~~~np-~-~v~~el------------~~~gl~----- 137 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINH----AKA-AGVPIVVAINKIDKPEANP-D-KVKQEL------------QEYGLV----- 137 (509)
T ss_pred EEEEEEccCCcchhHHHHHHH----HHH-CCCCEEEEEecccCCCCCH-H-HHHHHH------------HHcCCC-----
Confidence 999999986 666666543 233 2338999999999974332 1 111112 122333
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
.+.|-.. ..++++||++| +|+++|+..+.-
T Consensus 138 ---------------~E~~gg~--v~~VpvSA~tg------------~Gi~eLL~~ill 167 (509)
T COG0532 138 ---------------PEEWGGD--VIFVPVSAKTG------------EGIDELLELILL 167 (509)
T ss_pred ---------------HhhcCCc--eEEEEeeccCC------------CCHHHHHHHHHH
Confidence 3344333 67899999999 999999997754
No 251
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.3e-10 Score=113.27 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=113.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCC-CC--------------CCCCCcceE--EeeEEeecCcceEEEEEEEcCCch
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNF-ED--------------ASDSSSELL--VNGWTINTKYYTADVSLWMAHLHE 109 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~-~~--------------~~~~t~~~~--~~~~~i~~~~~~~~l~I~Dt~G~e 109 (289)
+..=.+.|+-.-.-|||||..|++...- .+ +....+.+. ..+....+ +..+.+++.||||+-
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-GQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-CCceEEEeecCCCcc
Confidence 3344599999999999999999985321 11 011222222 22222222 556889999999999
Q ss_pred hhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 110 ~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
.|..-....+..++|+++|+|.++.-.-+.+.+++..+...- -+|.|.||+|+.... -.++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L--~iIpVlNKIDlp~ad------pe~V----------- 197 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGL--AIIPVLNKIDLPSAD------PERV----------- 197 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCC--eEEEeeeccCCCCCC------HHHH-----------
Confidence 998877788889999999999998766666666555554322 477789999994321 1111
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccc
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~ 269 (289)
..+..++.....-+.+.+|||+| .|++++++++++++-+...-.
T Consensus 198 ------------------------~~q~~~lF~~~~~~~i~vSAK~G------------~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 198 ------------------------ENQLFELFDIPPAEVIYVSAKTG------------LNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred ------------------------HHHHHHHhcCCccceEEEEeccC------------ccHHHHHHHHHhhCCCCCCCC
Confidence 12233333333346899999999 999999999999998775443
Q ss_pred c
Q 040295 270 S 270 (289)
Q Consensus 270 ~ 270 (289)
.
T Consensus 242 d 242 (650)
T KOG0462|consen 242 D 242 (650)
T ss_pred C
Confidence 3
No 252
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=5.1e-11 Score=100.27 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=87.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
-|++++|-.|+|||||++.+..+.. .++-||.-.......|- .++++.+|.+|+..-+..+..|+..++++|+.+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~Ig----~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSIG----GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHheec----CceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 5899999999999999999976653 44445443332222322 356889999999988889999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhh---cCCCeEEEEeeCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDL---QKFEILLCIGNKVDLLP 166 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~---~~~~~iivvgnK~Dl~~ 166 (289)
|+-+.+.|.+.+.-++.+-. ...-|+++.|||+|...
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 99999999988866665533 34458888999999954
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.22 E-value=2.7e-10 Score=111.40 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC------CC----------CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV------NF----------EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~------~~----------~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~ 111 (289)
+.++|+++|+.++|||||+++|.+. .. .++..+....+.....+ .....++.+.||||++.|
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY--ETAKRHYAHVDCPGHADY 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE--cCCCeEEEEEECCCccch
Confidence 3478999999999999999999721 10 01111222222222222 223456889999999887
Q ss_pred hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
......-...+|++++|.|.++...-+ -...+..+...+.+.+|+|.||+|+.+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 554444556799999999997542211 122233344445444678899999964
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.22 E-value=4.6e-11 Score=118.95 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=77.4
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC-CCCCC-------------------CCCCcceEEeeEEeecCcceEEEEEEEc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV-NFEDA-------------------SDSSSELLVNGWTINTKYYTADVSLWMA 105 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~-~~~~~-------------------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt 105 (289)
.....+|+|+|.+++|||||+++++.. ..... .....+..+........+..+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 345678999999999999999998632 11100 0001122222222233344678999999
Q ss_pred CCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 106 ~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
||+..|.......++.+|++|+|+|.++.-. .....++...+. ...|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~-~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL-RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh-cCCCEEEEEECccccC
Confidence 9999887656667889999999999986411 122333333333 4458999999999853
No 255
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.21 E-value=1.4e-10 Score=113.58 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=104.0
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCC---CCCC--CCCcceEEeeE---------------EeecC----------
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNF---EDAS--DSSSELLVNGW---------------TINTK---------- 94 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~---~~~~--~~t~~~~~~~~---------------~i~~~---------- 94 (289)
...+.+.|.++|.-..|||||+..|.+... .++. .-|+..-|... .....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346678899999999999999999997542 1111 11111111111 00000
Q ss_pred ----cceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH-hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCC
Q 040295 95 ----YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL-STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 95 ----~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~-~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~ 169 (289)
.....+.+.|+||++.|-.....-+..+|++++|.|.+++ ..-+.. ..+..+...+.+++|+|.||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~i~~~lgi~~iIVvlNKiDlv~~-- 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLAAVEIMKLKHIIILQNKIDLVKE-- 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHHHHHHcCCCcEEEEEecccccCH--
Confidence 0013578999999998865554557789999999999863 111111 22223344455688999999999632
Q ss_pred chhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHH---cCCeEEEeecCCCcccccccCCC
Q 040295 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE---HRIEYIEACASNVDFDKCLSIDG 246 (289)
Q Consensus 170 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ie~Sa~~~~~~~~~~~~~ 246 (289)
+... +..+++..+... ..++++.+||++|
T Consensus 187 ---~~~~-----------------------------------~~~~ei~~~l~~~~~~~~~iipVSA~~G---------- 218 (460)
T PTZ00327 187 ---AQAQ-----------------------------------DQYEEIRNFVKGTIADNAPIIPISAQLK---------- 218 (460)
T ss_pred ---HHHH-----------------------------------HHHHHHHHHHHhhccCCCeEEEeeCCCC----------
Confidence 1111 111223344332 3568999999999
Q ss_pred CchhHHHHHHHHHHhcc
Q 040295 247 DSQGVERLYGALSAHMW 263 (289)
Q Consensus 247 ~~~~i~~l~~~L~~~~~ 263 (289)
.|++++++.|...+.
T Consensus 219 --~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 219 --YNIDVVLEYICTQIP 233 (460)
T ss_pred --CCHHHHHHHHHhhCC
Confidence 999999999997554
No 256
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.21 E-value=1.6e-10 Score=113.00 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=73.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------C----CCCCCcceEEeeEEeecCcce
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVN--FE-------------------------D----ASDSSSELLVNGWTINTKYYT 97 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~--~~-------------------------~----~~~~t~~~~~~~~~i~~~~~~ 97 (289)
.++|+++|+.++|||||+.+|+... .. + +.......+..... .....
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~~~~~ 84 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FETPK 84 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--EccCC
Confidence 4789999999999999999998621 10 0 01111111111112 22334
Q ss_pred EEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHh---hH---HHHHHHHHHhhhcCCCeEEEEeeCCCC
Q 040295 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLS---TL---DALKHWVPSIDLQKFEILLCIGNKVDL 164 (289)
Q Consensus 98 ~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~---S~---~~l~~~~~~i~~~~~~~iivvgnK~Dl 164 (289)
..+.|.||||++.|.......+..+|++|+|.|.+... .| .....-+..+...+.+.+|++.||+|.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 67899999999999766666678999999999998642 11 111222223455566678899999995
No 257
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.20 E-value=2.4e-11 Score=117.33 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=115.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh-----hhc-cccccccC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE-----FSI-RSLPISDQ 121 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~-----~~~-~~~~~~~~ 121 (289)
.-.++|||-||||||||++.+...+... .|..|....+... .+++...+++.||||.-. -+. -......-
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH---~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH---LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh---hhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 4579999999999999999999887643 3555555444333 355667899999999521 111 11111122
Q ss_pred c---cEEEEEEeCC--CHhhHHHHHHHHHHhhhc-CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 122 L---TALVMVFNLN--DLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 122 a---d~vIlV~Dv~--~~~S~~~l~~~~~~i~~~-~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
| .+|+++.|++ ..-|.+..-.++..|+.. .++|+|+|.||+|+........+. +++
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~-~~l----------------- 306 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKN-QEL----------------- 306 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHH-HHH-----------------
Confidence 2 4889999998 456667777788888665 556999999999998654333222 222
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
.+.+...-+++++++|+.+. +||..|....|.+++.+++
T Consensus 307 ---------------------l~~~~~~~~v~v~~tS~~~e------------egVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 307 ---------------------LQTIIDDGNVKVVQTSCVQE------------EGVMDVRTTACEALLAARV 345 (620)
T ss_pred ---------------------HHHHHhccCceEEEecccch------------hceeeHHHHHHHHHHHHHH
Confidence 45555555689999999999 9999999999998887664
No 258
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=3e-10 Score=104.62 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=103.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCC-cceEEeeEEeecCcceEEEEEEEcCCchh----hhcccccc--
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSS-SELLVNGWTINTKYYTADVSLWMAHLHEE----FSIRSLPI-- 118 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t-~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----~~~~~~~~-- 118 (289)
-....|.++|-||+|||||++.+.+.+... .|..| .....- +++.+.. ..+.+-|.||.=. -+.+-..+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeecccc-ceeEeccCccccccccccCcccHHHHH
Confidence 334558999999999999999999877432 23222 221222 2222222 2388899998521 12222223
Q ss_pred -ccCccEEEEEEeCCCH---hhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcc
Q 040295 119 -SDQLTALVMVFNLNDL---STLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDF 190 (289)
Q Consensus 119 -~~~ad~vIlV~Dv~~~---~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~ 190 (289)
+..+...+||.|++.. .-++.++.+..++..+. ..|.+||+||+|+.. .+...
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e-------ae~~~------------ 331 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE-------AEKNL------------ 331 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh-------HHHHH------------
Confidence 4568999999999987 77787777777765553 348999999999942 12211
Q ss_pred cCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCe-EEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 191 CQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE-YIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
..++++..+-+ .+++||+++ +++.+++..|-.
T Consensus 332 --------------------------l~~L~~~lq~~~V~pvsA~~~------------egl~~ll~~lr~ 364 (366)
T KOG1489|consen 332 --------------------------LSSLAKRLQNPHVVPVSAKSG------------EGLEELLNGLRE 364 (366)
T ss_pred --------------------------HHHHHHHcCCCcEEEeeeccc------------cchHHHHHHHhh
Confidence 45666666544 899999999 999999987754
No 259
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.19 E-value=2.2e-10 Score=120.99 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=72.0
Q ss_pred CCHHHHHHHHhcCCCCCC----CCCCcceEEeeEEeec------------CcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 60 VGKRTILSRLLSVNFEDA----SDSSSELLVNGWTINT------------KYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 60 vGKSSLi~rl~~~~~~~~----~~~t~~~~~~~~~i~~------------~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
++||||+..+.+.+.... .++.+|..+.+..... .-....+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 359999999998876432 3444444333322100 000113799999999999887777788899
Q ss_pred EEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCC
Q 040295 124 ALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 124 ~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~ 169 (289)
++++|+|+++ +++++.+..+ ... ..|+++|+||+|+.+++.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~~l----k~~-~iPiIVViNKiDL~~~~~ 595 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAINIL----RQY-KTPFVVAANKIDLIPGWN 595 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHHHH----HHc-CCCEEEEEECCCCccccc
Confidence 9999999986 6777766532 222 348999999999976543
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.1e-10 Score=112.76 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=79.2
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEE--eeEEeecCcceEEEEEEEcCCchh-hhcc--------
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLV--NGWTINTKYYTADVSLWMAHLHEE-FSIR-------- 114 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~--~~~~i~~~~~~~~l~I~Dt~G~e~-~~~~-------- 114 (289)
...+++|+|+|+||||||||+|.|.+.+.... .+-.|.+. ....+..+| +.+.+.||+|.-. -..-
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIV-Spv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIV-SPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEe-CCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHH
Confidence 55669999999999999999999999886432 22223222 233344454 5689999999643 1110
Q ss_pred ccccccCccEEEEEEeC--CCHhhHHHHHHHHHHhhhc--------CCCeEEEEeeCCCCCCC
Q 040295 115 SLPISDQLTALVMVFNL--NDLSTLDALKHWVPSIDLQ--------KFEILLCIGNKVDLLPG 167 (289)
Q Consensus 115 ~~~~~~~ad~vIlV~Dv--~~~~S~~~l~~~~~~i~~~--------~~~~iivvgnK~Dl~~~ 167 (289)
...-++.+|.+++|+|. ++.++-..+.+.+...... ...++|++.||+|+...
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 12336679999999999 5555555555555544221 22489999999999754
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.17 E-value=4.6e-10 Score=97.58 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=68.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc--------cc--
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDAS----DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI--------RS-- 115 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~----~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~--------~~-- 115 (289)
++|+++|.+|||||||+|.+++....... ..|.........+ . ...+.++||||...... +.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~--~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW--D--GRRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE--C--CeEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 47999999999999999999988643221 2233322332222 2 24689999999643321 11
Q ss_pred -cccccCccEEEEEEeCCCH-hhHHHHHHHHHHh-hhcCCCeEEEEeeCCCCCCC
Q 040295 116 -LPISDQLTALVMVFNLNDL-STLDALKHWVPSI-DLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 116 -~~~~~~ad~vIlV~Dv~~~-~S~~~l~~~~~~i-~~~~~~~iivvgnK~Dl~~~ 167 (289)
.....++|++++|.++.+. .....+-.++..+ ......++++|.|+.|.+..
T Consensus 77 ~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred HHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 1224578999999998862 1112222233222 21112367888999998754
No 262
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.15 E-value=2e-10 Score=103.88 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=77.1
Q ss_pred chhhhccccccccCccEEEEEEeCCCHh-hHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCC
Q 040295 108 HEEFSIRSLPISDQLTALVMVFNLNDLS-TLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSA 186 (289)
Q Consensus 108 ~e~~~~~~~~~~~~ad~vIlV~Dv~~~~-S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~ 186 (289)
.++|+.+.+.+++++|++++|||++++. +|+.+..|+..+... ..|+++|+||+||.+.. .+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~-~i~~vIV~NK~DL~~~~--------~~-------- 85 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQ-NIEPIIVLNKIDLLDDE--------DM-------- 85 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECcccCCCH--------HH--------
Confidence 4788999999999999999999999887 999999999877653 34777899999996421 11
Q ss_pred CCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 187 DPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
..+.+..+. ..+++++++||+++ .|++++|+.|...
T Consensus 86 --------------------------~~~~~~~~~-~~g~~v~~~SAktg------------~gi~eLf~~l~~~ 121 (245)
T TIGR00157 86 --------------------------EKEQLDIYR-NIGYQVLMTSSKNQ------------DGLKELIEALQNR 121 (245)
T ss_pred --------------------------HHHHHHHHH-HCCCeEEEEecCCc------------hhHHHHHhhhcCC
Confidence 001134443 47889999999999 9999999988754
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.14 E-value=1.5e-09 Score=100.41 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=63.8
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh-h---h---cccc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE-F---S---IRSL 116 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~-~---~---~~~~ 116 (289)
...--..|+++|.|+||||||++.+.+.+... .|..|+- ...+-.+ .+...++++.|+||.=. . + ...-
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl-~~VPG~l--~Y~ga~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTL-EPVPGML--EYKGAQIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceec-ccccceE--eecCceEEEEcCcccccCcccCCCCcceee
Confidence 34445789999999999999999999887543 2433332 2223333 34467899999997421 1 1 1122
Q ss_pred ccccCccEEEEEEeCCCHhh-HHHHHHHH
Q 040295 117 PISDQLTALVMVFNLNDLST-LDALKHWV 144 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S-~~~l~~~~ 144 (289)
...+.||++|+|.|+..... .+.+...+
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~~i~~EL 164 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRDIIEREL 164 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHHHHHHHH
Confidence 55789999999999985544 54444433
No 264
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.14 E-value=1.5e-09 Score=104.70 Aligned_cols=83 Identities=18% Similarity=0.025 Sum_probs=56.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCC-----CCcceEEeeEEe----------------ecCcceEEEEEEEcCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASD-----SSSELLVNGWTI----------------NTKYYTADVSLWMAHL 107 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~-----~t~~~~~~~~~i----------------~~~~~~~~l~I~Dt~G 107 (289)
+||+|+|.+|||||||+++|++..+.. .+. ++.+..+....+ ........+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999887643 232 222322211000 1112346789999999
Q ss_pred c----hhhhcccccc---ccCccEEEEEEeCC
Q 040295 108 H----EEFSIRSLPI---SDQLTALVMVFNLN 132 (289)
Q Consensus 108 ~----e~~~~~~~~~---~~~ad~vIlV~Dv~ 132 (289)
. +....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3344444455 78999999999996
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=2.3e-10 Score=103.71 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=105.9
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCcceEEeeEEeecCcceEEEEEEEcCCchh-------hhc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDAS--DSSSELLVNGWTINTKYYTADVSLWMAHLHEE-------FSI 113 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~-------~~~ 113 (289)
...-.+.++|+++|..|||||||||.++.++..+.. ..+.....+.+ ...++ -.+.+||+||.+. ++.
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~--~~l~lwDtPG~gdg~~~D~~~r~ 109 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDG--ENLVLWDTPGLGDGKDKDAEHRQ 109 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccc--cceEEecCCCcccchhhhHHHHH
Confidence 333445578999999999999999999976654322 11222111111 11122 2489999998654 566
Q ss_pred cccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 114 RSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
+...++...|.++.+.+..++.---...-|.+=+......++|++.|.+|...... +-. +
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~----~W~----------------~ 169 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR----EWD----------------S 169 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc----ccc----------------c
Confidence 66678889999999999887643333333333333333368999999999864310 000 0
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-C-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-I-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
|=.+ +.+....-+.+++....+..+ + +++..+...+ +|++++..++++.+-
T Consensus 170 ~~~~-------p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~------------wgl~~l~~ali~~lp 222 (296)
T COG3596 170 AGHQ-------PSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLP------------WGLKELVRALITALP 222 (296)
T ss_pred ccCC-------CCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccC------------ccHHHHHHHHHHhCc
Confidence 0000 111112222233333322222 3 5777788888 999999999999764
No 266
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=8.6e-10 Score=106.16 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=111.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--C-------------CCCCCcceEEeeEEeec---CcceEEEEEEEcCCchhhh
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFE--D-------------ASDSSSELLVNGWTINT---KYYTADVSLWMAHLHEEFS 112 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~--~-------------~~~~t~~~~~~~~~i~~---~~~~~~l~I~Dt~G~e~~~ 112 (289)
.+.|+-+-.-|||||..|++...-. . +....+.....+..+.. ++..+.+++.||||+-.|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 4788889999999999999853210 0 11222222223333322 4477999999999999886
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
--...-+..+.|+++|+|.++.-.-+.+.+.+..+...- -+|-|.||+||.... -.++
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~L--eIiPViNKIDLP~Ad------perv-------------- 148 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL--EIIPVLNKIDLPAAD------PERV-------------- 148 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCc--EEEEeeecccCCCCC------HHHH--------------
Confidence 655566778999999999998877777777666665422 477789999995321 1111
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCe---EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE---YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
.+++-.-.|++ .+.||||+| .||+++++++++.+-+..
T Consensus 149 ------------------------k~eIe~~iGid~~dav~~SAKtG------------~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 149 ------------------------KQEIEDIIGIDASDAVLVSAKTG------------IGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred ------------------------HHHHHHHhCCCcchheeEecccC------------CCHHHHHHHHHhhCCCCC
Confidence 45555556763 788999999 999999999999887764
No 267
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.11 E-value=2.3e-10 Score=92.24 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=96.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc----hhhhccccccccCccEEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH----EEFSIRSLPISDQLTALV 126 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~----e~~~~~~~~~~~~ad~vI 126 (289)
|++++|..|||||||.+.+.+.... +..|..++|... ...||||. ..+++........++.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999877643 334444433211 23488873 333333335567899999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
+|-.++++.|. +-+.+......|+|-|.+|.||... ..+
T Consensus 70 ~v~~and~~s~-----f~p~f~~~~~k~vIgvVTK~DLaed--------~dI---------------------------- 108 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDIGVKKVIGVVTKADLAED--------ADI---------------------------- 108 (148)
T ss_pred eeecccCcccc-----CCcccccccccceEEEEecccccch--------HhH----------------------------
Confidence 99999988543 1222333344478999999999631 111
Q ss_pred CCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 207 EEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
....+|..+-|. ++|++|+.++ .||+++++.|..
T Consensus 109 --------~~~~~~L~eaGa~~IF~~s~~d~------------~gv~~l~~~L~~ 143 (148)
T COG4917 109 --------SLVKRWLREAGAEPIFETSAVDN------------QGVEELVDYLAS 143 (148)
T ss_pred --------HHHHHHHHHcCCcceEEEeccCc------------ccHHHHHHHHHh
Confidence 116789999997 5999999999 999999999865
No 268
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.11 E-value=2.3e-09 Score=99.12 Aligned_cols=176 Identities=14% Similarity=0.179 Sum_probs=119.2
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcc--eEEEEEEEcCCchhhhcccccccc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY--TADVSLWMAHLHEEFSIRSLPISD 120 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~--~~~l~I~Dt~G~e~~~~~~~~~~~ 120 (289)
+.....+-.|+++|+.++||||||.++.+.+ .+...-+..|....+.+.+. -.++.+|-..|.-....+....+.
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ 122 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP 122 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence 3445566789999999999999999998876 23344455555555544332 345778877776544444432222
Q ss_pred C----ccEEEEEEeCCCH-hhHHHHHHHHHHhhh----------------------------------------------
Q 040295 121 Q----LTALVMVFNLNDL-STLDALKHWVPSIDL---------------------------------------------- 149 (289)
Q Consensus 121 ~----ad~vIlV~Dv~~~-~S~~~l~~~~~~i~~---------------------------------------------- 149 (289)
. -..+||+.|+++| .-++.+..|..-++.
T Consensus 123 ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~ 202 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS 202 (473)
T ss_pred ccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence 1 2488999999988 555666666543311
Q ss_pred ----------------c-CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHH
Q 040295 150 ----------------Q-KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWE 212 (289)
Q Consensus 150 ----------------~-~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (289)
+ -.-|++||++|+|...-- +..- .-.+++.+-
T Consensus 203 ~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~l------eke~-------------------------eyrDehfdf 251 (473)
T KOG3905|consen 203 SADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVL------EKEH-------------------------EYRDEHFDF 251 (473)
T ss_pred ccccccccccCCcchhhcCCCcEEEEEeccchhhHh------hhcc-------------------------hhhHHHHHH
Confidence 0 011899999999994310 0000 013345556
Q ss_pred HHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 213 IRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 213 ~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
+...++.||..+|..+|.+|+|.. .|++-++++|..+++.
T Consensus 252 iq~~lRkFCLr~GaaLiyTSvKE~------------KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 252 IQSHLRKFCLRYGAALIYTSVKET------------KNIDLLYKYIVHRSYG 291 (473)
T ss_pred HHHHHHHHHHHcCceeEEeecccc------------cchHHHHHHHHHHhcC
Confidence 666789999999999999999999 9999999999998863
No 269
>PRK12739 elongation factor G; Reviewed
Probab=99.11 E-value=9.6e-10 Score=112.99 Aligned_cols=117 Identities=21% Similarity=0.127 Sum_probs=76.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCC--------CC----------CCCCCcceEEeeEEeecCcceEEEEEEEcCC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNF--------ED----------ASDSSSELLVNGWTINTKYYTADVSLWMAHL 107 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~--------~~----------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G 107 (289)
.+...+|+|+|+.++|||||+++|+...- .. +....+........+..+ ..++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence 34556899999999999999999975211 00 011112222222222222 45789999999
Q ss_pred chhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 108 ~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+..|.......++.+|++|+|+|..+...-+.... +..+...+ .|+|++.||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i-~~~~~~~~-~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETV-WRQADKYG-VPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHH-HHHHHHcC-CCEEEEEECCCCCC
Confidence 98887766677889999999999987643333222 22333333 46788999999975
No 270
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.5e-10 Score=98.91 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=78.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccccccc---CccEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISD---QLTALV 126 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~---~ad~vI 126 (289)
-.|+++|++++|||+|+.+|..+.+...+.+-.+ .-..+.+... .+.+.|.||+.+.+.-...+++ .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep-n~a~~r~gs~----~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP-NEATYRLGSE----NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeecc-ceeeEeecCc----ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 3699999999999999999999876543322221 1112222222 3799999999988765556655 789999
Q ss_pred EEEeCC-CHhhHHHHHHHHHHhh-----hcCCCeEEEEeeCCCCCCCCC
Q 040295 127 MVFNLN-DLSTLDALKHWVPSID-----LQKFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 127 lV~Dv~-~~~S~~~l~~~~~~i~-----~~~~~~iivvgnK~Dl~~~~~ 169 (289)
||+|.. .+.-...+..++-.+- ..+.+|+++++||.|+...++
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 999974 3444445554444431 234559999999999986554
No 271
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.09 E-value=3.9e-09 Score=103.55 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=116.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC--cceEEEEEEEcCCchhhhccccccccC----
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK--YYTADVSLWMAHLHEEFSIRSLPISDQ---- 121 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~l~I~Dt~G~e~~~~~~~~~~~~---- 121 (289)
..-.|+|+|+.++|||||+.+|.+.+ ....+.+..|....+... ....++.+|-..|...+..+.+-.+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34579999999999999999997644 344566777655555443 224568999888876776666443332
Q ss_pred ccEEEEEEeCCCHhhH-HHHHHHHHHhhhc-------------------------------------------------C
Q 040295 122 LTALVMVFNLNDLSTL-DALKHWVPSIDLQ-------------------------------------------------K 151 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~-~~l~~~~~~i~~~-------------------------------------------------~ 151 (289)
-..+|+|.|.+.|-.+ +.+..|+.-++.+ .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 2489999999987333 3444444333210 0
Q ss_pred ------C---------CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHH
Q 040295 152 ------F---------EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRS 216 (289)
Q Consensus 152 ------~---------~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (289)
. -|++||++|+|.... -++.. ...++..+-+.+-
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~------Lek~~-------------------------~~~~e~~DfIqq~ 229 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIET------LEKET-------------------------DWKEEHFDFIQQY 229 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHH------Hhhhc-------------------------ccchhhHHHHHHH
Confidence 0 177778888887421 01111 0234456677777
Q ss_pred HHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 217 CLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 217 ~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+.+|..||+.+|.||++.. .+++.++++|..+++..
T Consensus 230 LR~~cL~yGAsL~yts~~~~------------~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 230 LRTFCLKYGASLIYTSVKEE------------KNLDLLYKYILHRLYGF 266 (472)
T ss_pred HHHHHHhcCCeEEEeecccc------------ccHHHHHHHHHHHhccC
Confidence 99999999999999999998 99999999988887643
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.09 E-value=1.3e-09 Score=111.60 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=72.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCCC------------------CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccc
Q 040295 55 IGSSNVGKRTILSRLLSVNFED------------------ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSL 116 (289)
Q Consensus 55 lG~~gvGKSSLi~rl~~~~~~~------------------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~ 116 (289)
+|+.++|||||+++|+...-.. +....+........+... .+.+.+|||||+..|.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 5999999999999996432110 001111112212222222 46799999999988876666
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
..++.+|++|+|+|.+..........|. .+... ..|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~-~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY-GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc-CCCEEEEEECCCCCCC
Confidence 7788999999999999876666554443 23332 3478889999999753
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.09 E-value=3e-10 Score=117.17 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=78.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC---------------CCCCC---CCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV---------------NFEDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~---------------~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
....+|+|+|+.++|||||+++|+.. ++... ...|+........+...+..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34568999999999999999999852 22211 1223333332322223445678999999999
Q ss_pred hhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 109 e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..|.......++.+|++|+|+|+...-..+....|.. ....+. |+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~~~~-p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALKENV-KPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHHcCC-CEEEEEEChhccc
Confidence 9987766778899999999999986432222222322 222233 5678999999863
No 274
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=3.1e-09 Score=103.83 Aligned_cols=152 Identities=21% Similarity=0.225 Sum_probs=105.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA----SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.+-|.|+|.-.-|||||+..|-+...... .++.+|. ....+. .+ -.+.+.||||+..|..++..-..-+|+
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGA--F~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGA--FTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceece--EEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence 35699999999999999999987765432 2233332 222333 33 468999999999999998888888999
Q ss_pred EEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|+...| +++.+.++. . +....|+++..||+|.. +..++ ...+++ +++|+-
T Consensus 228 vVLVVAadDGVmpQT~EaIkh----A-k~A~VpiVvAinKiDkp-~a~pe-kv~~eL------------~~~gi~----- 283 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLEAIKH----A-KSANVPIVVAINKIDKP-GANPE-KVKREL------------LSQGIV----- 283 (683)
T ss_pred EEEEEEccCCccHhHHHHHHH----H-HhcCCCEEEEEeccCCC-CCCHH-HHHHHH------------HHcCcc-----
Confidence 999999886 566666653 1 22334899999999974 33322 222222 111211
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
+..+| ++.+++||++| .|++.+-+++..
T Consensus 284 -------------------~E~~GGdVQvipiSAl~g------------~nl~~L~eaill 313 (683)
T KOG1145|consen 284 -------------------VEDLGGDVQVIPISALTG------------ENLDLLEEAILL 313 (683)
T ss_pred -------------------HHHcCCceeEEEeecccC------------CChHHHHHHHHH
Confidence 23344 57899999999 999999988765
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.04 E-value=9.3e-09 Score=103.07 Aligned_cols=112 Identities=12% Similarity=-0.032 Sum_probs=69.8
Q ss_pred EEEEEcCCchhh-----hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhH
Q 040295 100 VSLWMAHLHEEF-----SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAE 173 (289)
Q Consensus 100 l~I~Dt~G~e~~-----~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~ 173 (289)
+.+.||||...- .......+..+|+++||+|.++..+.... .....++..+. .|+++|.||+|+..... .
T Consensus 232 IIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dree---d 307 (741)
T PRK09866 232 LTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNS---D 307 (741)
T ss_pred EEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCccc---c
Confidence 556799997532 22234568899999999999875443332 23334444332 48999999999853211 0
Q ss_pred HHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC--C-eEEEeecCCCcccccccCCCCchh
Q 040295 174 YRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR--I-EYIEACASNVDFDKCLSIDGDSQG 250 (289)
Q Consensus 174 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ie~Sa~~~~~~~~~~~~~~~~~ 250 (289)
..+.+......+....+ + .+|.+||++| .|
T Consensus 308 -----------------------------------dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG------------~n 340 (741)
T PRK09866 308 -----------------------------------DADQVRALISGTLMKGCITPQQIFPVSSMWG------------YL 340 (741)
T ss_pred -----------------------------------hHHHHHHHHHHHHHhcCCCCceEEEEeCCCC------------CC
Confidence 01111122333322222 3 5899999999 99
Q ss_pred HHHHHHHHHHhc
Q 040295 251 VERLYGALSAHM 262 (289)
Q Consensus 251 i~~l~~~L~~~~ 262 (289)
++++++.|.++-
T Consensus 341 id~LLdeI~~~~ 352 (741)
T PRK09866 341 ANRARHELANNG 352 (741)
T ss_pred HHHHHHHHHhCC
Confidence 999999998743
No 276
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.02 E-value=4e-09 Score=98.17 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=100.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEE-eeEEeecCcceEEEEEEEcCCc-h---hhhccccc---ccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLV-NGWTINTKYYTADVSLWMAHLH-E---EFSIRSLP---ISD 120 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~-~~~~i~~~~~~~~l~I~Dt~G~-e---~~~~~~~~---~~~ 120 (289)
.-|.++|-||+|||||++.+...+.- ..|..|+-... --+.+ .. .-.+.+-|.||. | .-.-+-.. .+.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~--~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DG--GESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cC--CCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 34889999999999999999987642 33544433222 22222 22 224788999974 1 11112222 245
Q ss_pred CccEEEEEEeCCCHhh---HHHHHHHHHHhhhc----CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 121 QLTALVMVFNLNDLST---LDALKHWVPSIDLQ----KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S---~~~l~~~~~~i~~~----~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
.+...+.|.|++..+- .+.......++..+ ..+|.+||+||+|+.... +..+.+
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~----e~~~~~--------------- 297 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE----EELEEL--------------- 297 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH----HHHHHH---------------
Confidence 6889999999985432 45555555555554 345899999999964320 222222
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCe--EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE--YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
+..+....+.. ++ +||.++ +|++++...+.+.+....
T Consensus 298 -----------------------~~~l~~~~~~~~~~~-ISa~t~------------~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 298 -----------------------KKALAEALGWEVFYL-ISALTR------------EGLDELLRALAELLEETK 336 (369)
T ss_pred -----------------------HHHHHHhcCCCccee-eehhcc------------cCHHHHHHHHHHHHHHhh
Confidence 55666555543 33 999999 999999999988776554
No 277
>PRK00007 elongation factor G; Reviewed
Probab=99.02 E-value=5.9e-09 Score=107.22 Aligned_cols=117 Identities=21% Similarity=0.154 Sum_probs=75.1
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC--CCCC----------------CCCCCcceEEeeEEeecCcceEEEEEEEcCC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV--NFED----------------ASDSSSELLVNGWTINTKYYTADVSLWMAHL 107 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~--~~~~----------------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G 107 (289)
.+...+|+|+|..++|||||+++|+.. .... +....+..+.....+... ...+.+.||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 445568999999999999999999741 1100 011112222222222222 45789999999
Q ss_pred chhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 108 ~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+..|..-....++.+|++|+|+|....-.-+....|. .+...+ .|+|++.||+|+..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~~-~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKYK-VPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHcC-CCEEEEEECCCCCC
Confidence 9887654455577899999999987654444333332 233333 36778999999975
No 278
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.5e-09 Score=101.70 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=94.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCC--CCC-------CCCCcceE--EeeEEe------------------ecCcceE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNF--EDA-------SDSSSELL--VNGWTI------------------NTKYYTA 98 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~--~~~-------~~~t~~~~--~~~~~i------------------~~~~~~~ 98 (289)
+.++++++|+..+|||||+-||+.+-- .+. .....+.. +..|.+ ......+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 458999999999999999999986422 110 00001100 111211 1112235
Q ss_pred EEEEEEcCCchhhhccccccccCccEEEEEEeCCCHh---hHHHH---HHHHHHhhhcCCCeEEEEeeCCCCCCCCCchh
Q 040295 99 DVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLS---TLDAL---KHWVPSIDLQKFEILLCIGNKVDLLPGHPVHA 172 (289)
Q Consensus 99 ~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~---S~~~l---~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~ 172 (289)
.+.|.|+||+..|-..+-.-..+||++|||.|+.+.+ .|... +.-+--.+..+..-+|++.||+|+.+ + .
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-w--d- 161 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-W--D- 161 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-c--C-
Confidence 6899999999988776666788899999999998653 22111 11111223334557899999999975 2 1
Q ss_pred HHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCC
Q 040295 173 EYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNV 236 (289)
Q Consensus 173 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~ 236 (289)
.+| -+++..+...+.+..| ++|+.+|+..|
T Consensus 162 -e~r---------------------------------f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G 196 (428)
T COG5256 162 -EER---------------------------------FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKG 196 (428)
T ss_pred -HHH---------------------------------HHHHHHHHHHHHHHcCCCccCCeEEecccccC
Confidence 111 2244445666666666 45999999999
No 279
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=2.7e-09 Score=96.91 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=72.5
Q ss_pred EEEEEEcCCchhhh---cccccc---ccC--ccEEEEEEeCCCHh---hHHHHHHHHH-HhhhcCCCeEEEEeeCCCCCC
Q 040295 99 DVSLWMAHLHEEFS---IRSLPI---SDQ--LTALVMVFNLNDLS---TLDALKHWVP-SIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 99 ~l~I~Dt~G~e~~~---~~~~~~---~~~--ad~vIlV~Dv~~~~---S~~~l~~~~~-~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.+.+||+||+..+. .....+ +.. ++++++|+|.+... .+.... |+. ........|+++|.||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~-~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLL-LLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHH-HHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 58899999986542 222222 222 88999999996543 333332 222 222233458888999999976
Q ss_pred CCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccC
Q 040295 167 GHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSI 244 (289)
Q Consensus 167 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~ 244 (289)
.... ....+.+ . +|+.+..-+.... .. .....+...+.....+ .+++++|++++
T Consensus 177 ~~~~-~~~~~~l---~----~~~~~~~~l~~~~-----~~---~~~~~~~~~~~i~~~~~~~~vi~iSa~~~-------- 232 (253)
T PRK13768 177 EEEL-ERILKWL---E----DPEYLLEELKLEK-----GL---QGLLSLELLRALEETGLPVRVIPVSAKTG-------- 232 (253)
T ss_pred chhH-HHHHHHH---h----CHHHHHHHHhccc-----ch---HHHHHHHHHHHHHHHCCCCcEEEEECCCC--------
Confidence 4321 0111111 0 1000000000000 00 0122222223333344 47899999999
Q ss_pred CCCchhHHHHHHHHHHhcc
Q 040295 245 DGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 245 ~~~~~~i~~l~~~L~~~~~ 263 (289)
.|+++++++|.+.+.
T Consensus 233 ----~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 233 ----EGFDELYAAIQEVFC 247 (253)
T ss_pred ----cCHHHHHHHHHHHcC
Confidence 999999999988663
No 280
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.98 E-value=1.1e-08 Score=100.65 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=86.1
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.-.+.+.+.++|+.++|||.|++.|+++.+...+..+....+....+...+....+.+-|.+-. ....+...- ..+|.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3445688999999999999999999999887755555555543333333344444566665433 222222222 67999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
++++||++++.+|+.+...+.........|+++|+.|+|+.+
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDE 540 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccch
Confidence 999999999999999998777766665559999999999953
No 281
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.97 E-value=7.2e-09 Score=97.15 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=85.2
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH----------hhHHHHHHHHHHhhhc---CCCeEEEEeeCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL----------STLDALKHWVPSIDLQ---KFEILLCIGNKVD 163 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~----------~S~~~l~~~~~~i~~~---~~~~iivvgnK~D 163 (289)
.+.+.+||++||...+..|.+++.+++++|||.|+++. ..+......+..+-.. ...|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 45688999999999999999999999999999999863 3444444444444322 3449999999999
Q ss_pred CCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHH--cCCeEEEeecCCCccccc
Q 040295 164 LLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE--HRIEYIEACASNVDFDKC 241 (289)
Q Consensus 164 l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ie~Sa~~~~~~~~ 241 (289)
+.. +++.......+-|++...+ .+.++...-++.+-..+... ..+-...++|.+-
T Consensus 240 ~f~---------~ki~~~~l~~~fp~y~g~~---------~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt----- 296 (317)
T cd00066 240 LFE---------EKIKKSPLTDYFPDYTGPP---------NDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDT----- 296 (317)
T ss_pred HHH---------HhhcCCCccccCCCCCCCC---------CCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccch-----
Confidence 963 3332222233444441110 01111111221222222211 1233456888887
Q ss_pred ccCCCCchhHHHHHHHHHHhcccC
Q 040295 242 LSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 242 ~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.++..+|.++...++..
T Consensus 297 -------~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 297 -------ENIRFVFDAVKDIILQN 313 (317)
T ss_pred -------HHHHHHHHHHHHHHHHH
Confidence 99999999998877543
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.97 E-value=1.1e-08 Score=91.32 Aligned_cols=112 Identities=11% Similarity=0.137 Sum_probs=69.1
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
..+...|+|+|.+|+|||||++.+....-........+. ..+... ....+.++||||.- ..+. ...+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~~~-~~~~i~~vDtPg~~--~~~l-~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVVTG-KKRRLTFIECPNDI--NAMI-DIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEEec-CCceEEEEeCCchH--HHHH-HHHHhcCEE
Confidence 344578999999999999999999865211111111111 111111 24568899999853 1112 335789999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
++|+|.+....... ..++..+...+.+.+++|.||+|+..
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHcCCCeEEEEEeccccCC
Confidence 99999975433322 23344444444444667999999974
No 283
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.96 E-value=1.2e-09 Score=106.58 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=112.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+|+.|+|..++|||+|++|++.+.|.+...+..+ .| ...+...+....+.+.|.+|... ..|..++|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 348999999999999999999999998766555444 33 23333455566788889877332 256778999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCC---eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFE---ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~---~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
||.+.+..+|+.+..+...+..+... |++++|++.=.....+ +.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~------rv--------------------------- 148 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRP------RV--------------------------- 148 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccc------cc---------------------------
Confidence 99999999999999877776544332 6777776633321110 00
Q ss_pred CCCCCcHHHHHHHH-HHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 205 GDEEPSWEIRRSCL-EWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 205 ~~~~~~~~~~~~~~-~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
....++. ..|....+.||+++|-+| .++.++|+.++..+...
T Consensus 149 -------~~da~~r~l~~~~krcsy~et~atyG------------lnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 149 -------ITDDRARQLSAQMKRCSYYETCATYG------------LNVERVFQEVAQKIVQL 191 (749)
T ss_pred -------cchHHHHHHHHhcCccceeecchhhh------------hhHHHHHHHHHHHHHHH
Confidence 0111133 445566789999999999 99999999998766443
No 284
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=3.6e-09 Score=93.78 Aligned_cols=165 Identities=15% Similarity=0.234 Sum_probs=102.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCC-CC--CCCCcceEEeeEEeecCcceEEEEEEEcCCchhh-----hccccccccC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFE-DA--SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF-----SIRSLPISDQ 121 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~-~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~-----~~~~~~~~~~ 121 (289)
-||+++|.+|+||||+=..+..+-.. +. -..|+.++.......+ .+.+.+||.+||+.| .......+++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG---nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG---NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh---hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 58999999999999976555432211 11 2233444443333333 256899999999855 2233456889
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHh---hhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSI---DLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i---~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
.+++|+|||+...+--..+..+-..+ .+..+. -+.+...|.||+... .|.+
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d------~r~~------------------- 136 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED------AREL------------------- 136 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc------hHHH-------------------
Confidence 99999999998776555555444433 333333 677789999998632 2322
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
.....++....+....++.++.+|-.+ +.+-.....+..++.|+.
T Consensus 137 -----------if~~r~~~l~~~s~~~~~~~f~TsiwD-------------etl~KAWS~iv~~lipn~ 181 (295)
T KOG3886|consen 137 -----------IFQRRKEDLRRLSRPLECKCFPTSIWD-------------ETLYKAWSSIVYNLIPNV 181 (295)
T ss_pred -----------HHHHHHHHHHHhcccccccccccchhh-------------HHHHHHHHHHHHhhCCCh
Confidence 122223334444444556788888776 566666777777776665
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.93 E-value=2.4e-08 Score=87.65 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=53.0
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
++.+|.|+|+++.++... .+...+.. .=++|+||+|+.+...
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi~~----ad~~~~~k~d~~~~~~-------------------------------- 154 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGITR----SDLLVINKIDLAPMVG-------------------------------- 154 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHhhh----ccEEEEEhhhcccccc--------------------------------
Confidence 688999999987666322 11222211 1156899999963100
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.......+.+..+ ..+.++++|||++| +|++++|++|.+..+
T Consensus 155 ------~~~~~~~~~~~~~--~~~~~i~~~Sa~~g------------~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKM--RGEKPFIFTNLKTK------------EGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHh--CCCCCEEEEECCCC------------CCHHHHHHHHHhhcC
Confidence 0111112223333 34578999999999 999999999987664
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.91 E-value=1.1e-08 Score=95.24 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc-------cccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDAS-DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR-------SLPI 118 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~-------~~~~ 118 (289)
...++|+++|.+||||||++|++++....... ..+.+........... ..++.++||||....... .+.+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 34589999999999999999999987642211 1111111111111222 457999999997543211 1122
Q ss_pred c--cCccEEEEEEeCCCHhhHHHH-HHHHHHhhhc----CCCeEEEEeeCCCCCC
Q 040295 119 S--DQLTALVMVFNLNDLSTLDAL-KHWVPSIDLQ----KFEILLCIGNKVDLLP 166 (289)
Q Consensus 119 ~--~~ad~vIlV~Dv~~~~S~~~l-~~~~~~i~~~----~~~~iivvgnK~Dl~~ 166 (289)
+ ...|++++|..++... +... ...+..+... --..+|||.++.|..+
T Consensus 114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2 2689999996654221 2111 1222223222 1126888999999874
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.90 E-value=1.2e-08 Score=92.54 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=70.3
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc---c----
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDAS---DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI---R---- 114 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~---~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~---~---- 114 (289)
.....++|+++|.+|||||||+|.+++....... ..|.....+ ..... ...+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~--~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREV--SGTVD--GFKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEE--EEEEC--CeEEEEEECCCcCcchhhHHHHHHH
Confidence 4556689999999999999999999998753221 122222222 22222 35689999999754311 0
Q ss_pred ---cccccc--CccEEEEEEeCCCH-hhHHHHHHHHHHhhhc-C---CCeEEEEeeCCCCCCCC
Q 040295 115 ---SLPISD--QLTALVMVFNLNDL-STLDALKHWVPSIDLQ-K---FEILLCIGNKVDLLPGH 168 (289)
Q Consensus 115 ---~~~~~~--~ad~vIlV~Dv~~~-~S~~~l~~~~~~i~~~-~---~~~iivvgnK~Dl~~~~ 168 (289)
...++. ..|++++|..++.. ..+.. ...+..+... + -..+++|.||+|..+..
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 122332 57888888766532 22221 1223333321 1 12689999999997543
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=98.83 E-value=7.6e-08 Score=92.44 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=53.5
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCc-ceEEeeEEeecCc-------------ceEEEEEEEcCCchh
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSS-ELLVNGWTINTKY-------------YTADVSLWMAHLHEE 110 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~-~~~~~~~~i~~~~-------------~~~~l~I~Dt~G~e~ 110 (289)
....++|+|+|.||||||||+|.+.+..... .+..|+ ........+.... ....+.+.||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3456899999999999999999998776432 232222 2222222222110 123589999999532
Q ss_pred hh----cccc---ccccCccEEEEEEeC
Q 040295 111 FS----IRSL---PISDQLTALVMVFNL 131 (289)
Q Consensus 111 ~~----~~~~---~~~~~ad~vIlV~Dv 131 (289)
-. .+.. ..++.+|++++|.|.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 11 1111 236789999999997
No 289
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.82 E-value=6.4e-08 Score=85.48 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCcceEEeeEEeecCcceEEEEEEEcCCchhh--------hccc--
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDAS----DSSSELLVNGWTINTKYYTADVSLWMAHLHEEF--------SIRS-- 115 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~----~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~--------~~~~-- 115 (289)
.+|+++|.+|+||||++|.+++....... ..|........ ...+ ..+.++||||.-.- ..+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~--~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~ 76 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG--EVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRC 76 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE--EETT--EEEEEEE--SSEETTEEHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee--eecc--eEEEEEeCCCCCCCcccHHHHHHHHHHH
Confidence 37999999999999999999988753322 11222222222 2333 46899999994211 1111
Q ss_pred -cccccCccEEEEEEeCCCHhhHHHH--HHHHHHh-hhcCCCeEEEEeeCCCCCCC
Q 040295 116 -LPISDQLTALVMVFNLNDLSTLDAL--KHWVPSI-DLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 116 -~~~~~~ad~vIlV~Dv~~~~S~~~l--~~~~~~i-~~~~~~~iivvgnK~Dl~~~ 167 (289)
.....+.|+++||+..+.. +-+.. -.++..+ ...--+.+|||.+..|....
T Consensus 77 l~~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp HHHTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred HHhccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 1124578999999998822 22211 1222222 21112256777777776544
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.80 E-value=6.9e-08 Score=92.01 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=86.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceE--EeeEEeecCcceEEEEEEEcCCchhhhcccccc-----cc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELL--VNGWTINTKYYTADVSLWMAHLHEEFSIRSLPI-----SD 120 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~--~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~-----~~ 120 (289)
.++|+|+|.+|+|||||||.|.+-.-. +...+|...+ .......... .-.+.+||.||...-..-...| +.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 479999999999999999999763222 2222221111 1111111111 1248999999864322222233 44
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
..|.+|++.+-. |....-|+..--....+++++|-+|+|..- ...++-.++.
T Consensus 114 ~yD~fiii~s~r----f~~ndv~La~~i~~~gK~fyfVRTKvD~Dl------~~~~~~~p~~------------------ 165 (376)
T PF05049_consen 114 RYDFFIIISSER----FTENDVQLAKEIQRMGKKFYFVRTKVDSDL------YNERRRKPRT------------------ 165 (376)
T ss_dssp G-SEEEEEESSS------HHHHHHHHHHHHTT-EEEEEE--HHHHH------HHHHCC-STT------------------
T ss_pred ccCEEEEEeCCC----CchhhHHHHHHHHHcCCcEEEEEecccccH------hhhhccCCcc------------------
Confidence 678999887643 444444443333333447999999999610 1111100000
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
-..+.-..++++.+.+-..+.|+ +.|-+|..+- ..+..+.+.+.|.+.+-.+
T Consensus 166 ---f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl----------~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 166 ---FNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL----------SKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp -----HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT----------TSTTHHHHHHHHHHHS-GG
T ss_pred ---cCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc----------ccCChHHHHHHHHHHhHHH
Confidence 01122234556666666666665 3778888754 3366888888887766544
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.73 E-value=5.4e-08 Score=91.68 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=63.7
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHH
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRR 176 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r 176 (289)
.+.+.|.||+|...-.. .....+|.+++|.+....+.+..++.-..++ .-++|.||+|+.+... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------aDIiVVNKaDl~~~~~-----a~ 213 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKGIMEL------ADLIVINKADGDNKTA-----AR 213 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhhhhhh------hheEEeehhcccchhH-----HH
Confidence 35688999998642211 1355799999997655555554443211111 1267899999975321 11
Q ss_pred HhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHH-------cCCeEEEeecCCCcccccccCCCCch
Q 040295 177 RLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE-------HRIEYIEACASNVDFDKCLSIDGDSQ 249 (289)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ie~Sa~~~~~~~~~~~~~~~~ 249 (289)
+. .......... +..+++.+||+++ .
T Consensus 214 ~~-----------------------------------~~el~~~L~l~~~~~~~w~~pVi~vSA~~g------------~ 246 (332)
T PRK09435 214 RA-----------------------------------AAEYRSALRLLRPKDPGWQPPVLTCSALEG------------E 246 (332)
T ss_pred HH-----------------------------------HHHHHHHHhcccccccCCCCCEEEEECCCC------------C
Confidence 11 0112222221 2357999999999 9
Q ss_pred hHHHHHHHHHHhc
Q 040295 250 GVERLYGALSAHM 262 (289)
Q Consensus 250 ~i~~l~~~L~~~~ 262 (289)
|++++++.|.++.
T Consensus 247 GIdeL~~~I~~~~ 259 (332)
T PRK09435 247 GIDEIWQAIEDHR 259 (332)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999864
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=98.71 E-value=4.9e-08 Score=102.37 Aligned_cols=118 Identities=12% Similarity=0.010 Sum_probs=75.5
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCcceEE--eeEEeec------CcceEEEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDA----------------SDSSSELLV--NGWTINT------KYYTADVS 101 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----------------~~~t~~~~~--~~~~i~~------~~~~~~l~ 101 (289)
.+..-+|+|+|+.++|||||+++|+...-... ....+.... ....... ++....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34456899999999999999999986321100 000011110 0111110 12246789
Q ss_pred EEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 102 LWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 102 I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
+.||||+..|..-....++.+|++|+|+|....-.-+...-| ..+...+ .|+|++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~~-~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQER-IRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHcC-CCEEEEEEChhhh
Confidence 999999998876666778899999999999875333333333 3333333 4788899999996
No 293
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2.4e-07 Score=86.72 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=96.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CCCCCcceEEeeEEeecC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED---------------------------------ASDSSSELLVNGWTINTK 94 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~---------------------------------~~~~t~~~~~~~~~i~~~ 94 (289)
..++++.||+-.=||||||-||+.+.-.. +..+.+..+....-+...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45899999999999999999999753211 011112222111111112
Q ss_pred cceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhh-cCCCeEEEEeeCCCCCCCCCchhH
Q 040295 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDL-QKFEILLCIGNKVDLLPGHPVHAE 173 (289)
Q Consensus 95 ~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~-~~~~~iivvgnK~Dl~~~~~~~~~ 173 (289)
.-++.|-||||++.|-..+..-...||++|++.|.... ....-.-...|-. .+-..++|..||+||..
T Consensus 85 --KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd------- 153 (431)
T COG2895 85 --KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGIRHVVVAVNKMDLVD------- 153 (431)
T ss_pred --cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCCcEEEEEEeeecccc-------
Confidence 34688999999999876666667789999999998543 2222222333322 24457999999999974
Q ss_pred HHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCC
Q 040295 174 YRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNV 236 (289)
Q Consensus 174 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~ 236 (289)
+.+.. .++++..-..|+...++ .++.+||..|
T Consensus 154 y~e~~-------------------------------F~~I~~dy~~fa~~L~~~~~~~IPiSAl~G 188 (431)
T COG2895 154 YSEEV-------------------------------FEAIVADYLAFAAQLGLKDVRFIPISALLG 188 (431)
T ss_pred cCHHH-------------------------------HHHHHHHHHHHHHHcCCCcceEEechhccC
Confidence 22222 34566667788888886 4999999999
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.69 E-value=4.8e-08 Score=88.07 Aligned_cols=68 Identities=21% Similarity=0.067 Sum_probs=34.5
Q ss_pred EEEEEEcCCchhhhccccccc--------cCccEEEEEEeCC---CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 99 DVSLWMAHLHEEFSIRSLPIS--------DQLTALVMVFNLN---DLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 99 ~l~I~Dt~G~e~~~~~~~~~~--------~~ad~vIlV~Dv~---~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.+.|+|||||-++...+.... ...-++|++.|.. ++..|-...-....+...-.-|.|.|.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 688999999977654442221 3456889999976 4544533321111112212238999999999986
No 295
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.69 E-value=1.9e-07 Score=78.34 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=43.9
Q ss_pred EEEEEcCCchhh----hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCC
Q 040295 100 VSLWMAHLHEEF----SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKV 162 (289)
Q Consensus 100 l~I~Dt~G~e~~----~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~ 162 (289)
+.|.||||.... ..+...|++.+|++|+|.+.++..+-.....|.......... +++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR-TIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS-EEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe-EEEEEcCC
Confidence 678999997432 234567789999999999999866655666665555554443 78889984
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.67 E-value=5.7e-07 Score=86.83 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=110.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCC--CCCC------------CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVN--FEDA------------SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS 115 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~--~~~~------------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~ 115 (289)
-.|+|+-.-.-|||||+..++.+. |.+. ....-|.+.........+..+.+.|.||||+..|-.-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 469999999999999999999754 3221 11112222222222233445779999999999998888
Q ss_pred cccccCccEEEEEEeCCCH---hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 116 LPISDQLTALVMVFNLNDL---STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~---~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
...+...|++++++|.... ++-= -+.+.-..+-+|| ||.||+|.....+
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTrF----VlkKAl~~gL~PI-VVvNKiDrp~Arp----------------------- 137 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTRF----VLKKALALGLKPI-VVINKIDRPDARP----------------------- 137 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCchhh----hHHHHHHcCCCcE-EEEeCCCCCCCCH-----------------------
Confidence 8889999999999998742 2211 1122223344454 4799999954321
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHH------HHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEW------CTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
.|.+.+--.-| .....++++..|+.+| +... +-.+.+.++.-+|+.|++++-+..
T Consensus 138 -----------------~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G-~a~~-~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 138 -----------------DEVVDEVFDLFVELGATDEQLDFPIVYASARNG-TASL-DPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred -----------------HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCc-eecc-CccccccchhHHHHHHHHhCCCCC
Confidence 11111111112 1235688999999998 3333 555566779999999999987765
Q ss_pred c
Q 040295 267 V 267 (289)
Q Consensus 267 ~ 267 (289)
.
T Consensus 199 ~ 199 (603)
T COG1217 199 G 199 (603)
T ss_pred C
Confidence 3
No 297
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.66 E-value=8.4e-08 Score=100.70 Aligned_cols=118 Identities=11% Similarity=-0.057 Sum_probs=76.4
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCC----------------CC--CCCcceEEeeEEee------------cCc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFED----------------AS--DSSSELLVNGWTIN------------TKY 95 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~----------------~~--~~t~~~~~~~~~i~------------~~~ 95 (289)
.+..-+|+|+|+.++|||||+.+|+...-.. +. ..|+.....+.... ...
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4556689999999999999999998643210 00 01111101111111 112
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
..+.+.+.||||+..|..-...-++.+|++|+|+|+...-.......|.. +... ..|+|++.||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~-~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE-RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC-CCCEEEEEECCccc
Confidence 35678999999999997766666889999999999986644433333433 2222 23678899999997
No 298
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.65 E-value=6.7e-07 Score=85.14 Aligned_cols=83 Identities=18% Similarity=0.029 Sum_probs=52.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC-CcceEEeeEEeecC-------------cceEEEEEEEcCCchhh---
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDS-SSELLVNGWTINTK-------------YYTADVSLWMAHLHEEF--- 111 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~-t~~~~~~~~~i~~~-------------~~~~~l~I~Dt~G~e~~--- 111 (289)
++|+|+|.||||||||+|++++..... .+.. |.........+... .....+.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 799999999999999999999877322 2222 22222222222221 01135899999995321
Q ss_pred -hcccc---ccccCccEEEEEEeCC
Q 040295 112 -SIRSL---PISDQLTALVMVFNLN 132 (289)
Q Consensus 112 -~~~~~---~~~~~ad~vIlV~Dv~ 132 (289)
..+.. ..++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11112 2367899999999973
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.1e-07 Score=90.51 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=99.9
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------CCCCcceEEeeEEeecCc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDA-----------------------------SDSSSELLVNGWTINTKY 95 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-----------------------------~~~t~~~~~~~~~i~~~~ 95 (289)
.+...+.++++|.-.+|||||+-+++..--... ..+.-|+.....+..++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 344568899999999999999999885211110 011111111111222234
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHH-------HHHHHHHhhhcCCCeEEEEeeCCCCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDA-------LKHWVPSIDLQKFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~-------l~~~~~~i~~~~~~~iivvgnK~Dl~~~~ 168 (289)
....+.|.|+||+..|-...-.-..+||++|||.|++ ...|+. .+....-++..+..-+||+.||.|+..=
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s-~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W- 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAS-TGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW- 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECC-cchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCc-
Confidence 4567899999999999776666677899999999997 333432 2223333455566688999999999741
Q ss_pred CchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHH-HHcCC-----eEEEeecCCC
Q 040295 169 PVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC-TEHRI-----EYIEACASNV 236 (289)
Q Consensus 169 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~ie~Sa~~~ 236 (289)
.++-.++++.....|. ...|+ .|+.||+.+|
T Consensus 331 -------------------------------------sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~G 367 (603)
T KOG0458|consen 331 -------------------------------------SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSG 367 (603)
T ss_pred -------------------------------------cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccC
Confidence 1112346666677787 55564 5999999999
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.64 E-value=2.4e-07 Score=86.10 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=26.7
Q ss_pred cccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 38 ~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+++...........|+|+|++|+|||||+..+..
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3444455556678899999999999999999764
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.63 E-value=2.3e-07 Score=81.47 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
...|+++|+.|+|||||+++++..
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999864
No 302
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.61 E-value=1.2e-07 Score=98.30 Aligned_cols=117 Identities=15% Similarity=0.002 Sum_probs=74.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCC--C----------------CCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDA--S----------------DSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~--~----------------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
+..-.|+|+|+.++|||||+.+++...-... . .-|+............+....+.+.||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 3445699999999999999999985321100 0 001111111111112233567899999999
Q ss_pred hhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 109 e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
..|.......++.+|++|+|+|....-.-+....|... ...+. |+|++.||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~~~-~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRERV-KPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHcCC-CeEEEEECchhh
Confidence 98877666778899999999998865333333334332 22233 457889999985
No 303
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.59 E-value=1.4e-06 Score=80.49 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=66.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCCcceEEeeEEeecCcceEEEEEEEcCCch---------
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDAS----------DSSSELLVNGWTINTKYYTADVSLWMAHLHE--------- 109 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~----------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e--------- 109 (289)
.++|+|+|.+|+|||||||.|++....... ..+.........+..++..+.+.++||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 378999999999999999999987653321 1233334445566667788899999999821
Q ss_pred ---------hhhccc-------c--ccccCccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 110 ---------EFSIRS-------L--PISDQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 110 ---------~~~~~~-------~--~~~~~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.|.... . ..=...|+++++.+.+.. .+..++ ..+..+.. -.++|-|..|+|.+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls~--~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLSK--RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHTT--TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhcc--cccEEeEEecccccC
Confidence 111100 0 001246899999987632 222222 22222222 226788899999975
No 304
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.7e-07 Score=92.97 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=81.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCcceEEeeEE-ee--------cC---cceEEEEEEEcCCchhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA----SDSSSELLVNGWT-IN--------TK---YYTADVSLWMAHLHEEF 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----~~~t~~~~~~~~~-i~--------~~---~~~~~l~I~Dt~G~e~~ 111 (289)
+.+-+||+|.-.+|||-|+..+-+.+.... .++.+|.+|.+.. |. +. ....-+.+.||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 345699999999999999999988765432 3334444444332 10 00 11223678899999999
Q ss_pred hccccccccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCC
Q 040295 112 SIRSLPISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~ 168 (289)
..+.......|+.+|+|.|+.+ +++++.+.. + +.+..|+||..||+|.+=++
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----L-R~rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----L-RMRKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHHHH----H-HhcCCCeEEeehhhhhhccc
Confidence 9999888889999999999985 455555432 2 23344889999999998655
No 305
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=2.7e-07 Score=81.42 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=100.8
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcC----
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAH---- 106 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~---- 106 (289)
..||..+++++.+.+..++-.++|+||||+|||||++.+..-+.. +.| .|..++..+.... |..
T Consensus 10 K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-----~~G------~I~i~g~~~~~~~-~~~~~R~ 77 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-----DSG------SITVDGEDVGDKK-DILKLRR 77 (240)
T ss_pred EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-----CCc------eEEECCEeccchh-hHHHHHH
Confidence 579999999999999999999999999999999999999776642 222 1111211100000 100
Q ss_pred --C--chhhhccc-cccccCc-cEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhh
Q 040295 107 --L--HEEFSIRS-LPISDQL-TALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLK 180 (289)
Q Consensus 107 --G--~e~~~~~~-~~~~~~a-d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~ 180 (289)
| -..|+-+. ...+.+. -+-+.|--....+.-+.+..++..+. ++.|.|.-|......+.+|..
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VG---------L~~ka~~yP~qLSGGQqQRVA-- 146 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVG---------LADKADAYPAQLSGGQQQRVA-- 146 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcC---------chhhhhhCccccCcHHHHHHH--
Confidence 0 01111000 0111111 13333444444455555556666554 367777776655444444433
Q ss_pred cccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE--EeecCCCcccccccCCCCchhHHHHHHHH
Q 040295 181 REESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYI--EACASNVDFDKCLSIDGDSQGVERLYGAL 258 (289)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--e~Sa~~~~~~~~~~~~~~~~~i~~l~~~L 258 (289)
-|+.+|.+-.+-.| .|||.+. +-+.++++.+
T Consensus 147 -----------------------------------IARALaM~P~vmLFDEPTSALDP------------Elv~EVL~vm 179 (240)
T COG1126 147 -----------------------------------IARALAMDPKVMLFDEPTSALDP------------ELVGEVLDVM 179 (240)
T ss_pred -----------------------------------HHHHHcCCCCEEeecCCcccCCH------------HHHHHHHHHH
Confidence 27777877776556 3999999 9999999988
Q ss_pred HHhcccCcc
Q 040295 259 SAHMWPGMV 267 (289)
Q Consensus 259 ~~~~~~~~~ 267 (289)
....-..|.
T Consensus 180 ~~LA~eGmT 188 (240)
T COG1126 180 KDLAEEGMT 188 (240)
T ss_pred HHHHHcCCe
Confidence 877666654
No 306
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2e-06 Score=80.43 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=98.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCC----CCCC---CCCCcceE--EeeEEee-----cCcceEEEEEEEcCCchhhhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVN----FEDA---SDSSSELL--VNGWTIN-----TKYYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~----~~~~---~~~t~~~~--~~~~~i~-----~~~~~~~l~I~Dt~G~e~~~~ 113 (289)
.++.+.|+|.-.+|||||.+++..-. |... ....+..+ |....+. ..+....+.+.|.||+...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL-- 83 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL-- 83 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH--
Confidence 34889999999999999999997532 1111 11111111 2222221 2445577899999998754
Q ss_pred ccccccc---CccEEEEEEeCCCH---hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCC
Q 040295 114 RSLPISD---QLTALVMVFNLNDL---STLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSAD 187 (289)
Q Consensus 114 ~~~~~~~---~ad~vIlV~Dv~~~---~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~ 187 (289)
.+..+. -.|..++|.|+... ++-+.+- |...-.+..++|.||+|+.+.+ .|+-
T Consensus 84 -IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi-----ig~~~c~klvvvinkid~lpE~------qr~s--------- 142 (522)
T KOG0461|consen 84 -IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI-----IGELLCKKLVVVINKIDVLPEN------QRAS--------- 142 (522)
T ss_pred -HHHHHhhhheeeeeeEEEehhcccccccchhhh-----hhhhhccceEEEEeccccccch------hhhh---------
Confidence 223333 35889999999843 3333331 2222223467789999998743 2222
Q ss_pred CcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC----CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 188 PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR----IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+....+.+.-....+ .|++++||+.|.|. -+++.++...|..++.
T Consensus 143 ---------------------ki~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~--------~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 143 ---------------------KIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFK--------EEMIQELKEALESRIF 193 (522)
T ss_pred ---------------------HHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccc--------hhHHHHHHHHHHHhhc
Confidence 11122222333333333 57999999998332 2678888888887776
Q ss_pred cCc
Q 040295 264 PGM 266 (289)
Q Consensus 264 ~~~ 266 (289)
...
T Consensus 194 ~P~ 196 (522)
T KOG0461|consen 194 EPK 196 (522)
T ss_pred CCC
Confidence 553
No 307
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=5.3e-07 Score=83.62 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=108.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCcceE--EeeEE--------------eec--------CcceEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNF---EDASDSSSELL--VNGWT--------------INT--------KYYTAD 99 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~---~~~~~~t~~~~--~~~~~--------------i~~--------~~~~~~ 99 (289)
++.+.|.++|.-.-|||||.+.+.+-.. .++....+... |.... ... ......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5678999999999999999999986332 22211111111 00000 000 011245
Q ss_pred EEEEEcCCchhhhccccccccCccEEEEEEeCC----CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHH
Q 040295 100 VSLWMAHLHEEFSIRSLPISDQLTALVMVFNLN----DLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYR 175 (289)
Q Consensus 100 l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~----~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~ 175 (289)
+.+.|.||+|-.-+-+-+-..-.|++++|.+.+ +|++-+++. .+.-.+-+.+|+|-||+||... +
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~----AleIigik~iiIvQNKIDlV~~-------E 156 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM----ALEIIGIKNIIIVQNKIDLVSR-------E 156 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH----HHhhhccceEEEEecccceecH-------H
Confidence 789999999977554433344469999999988 456666553 2344455568999999999742 3
Q ss_pred HHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCchhHH
Q 040295 176 RRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDSQGVE 252 (289)
Q Consensus 176 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~~~i~ 252 (289)
+.+ +..+++.+|.+-. +.+++.+||..+ .||+
T Consensus 157 ~Al---------------------------------E~y~qIk~FvkGt~Ae~aPIIPiSA~~~------------~NID 191 (415)
T COG5257 157 RAL---------------------------------ENYEQIKEFVKGTVAENAPIIPISAQHK------------ANID 191 (415)
T ss_pred HHH---------------------------------HHHHHHHHHhcccccCCCceeeehhhhc------------cCHH
Confidence 333 4455577777643 468999999999 9999
Q ss_pred HHHHHHHHhcccC
Q 040295 253 RLYGALSAHMWPG 265 (289)
Q Consensus 253 ~l~~~L~~~~~~~ 265 (289)
.++++|.+.+-..
T Consensus 192 al~e~i~~~IptP 204 (415)
T COG5257 192 ALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999988544
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.53 E-value=3e-06 Score=81.57 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=71.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC----CCCC--------------CCC---CCcceEE---eeEEeec-CcceEEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV----NFED--------------ASD---SSSELLV---NGWTINT-KYYTADVSL 102 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~----~~~~--------------~~~---~t~~~~~---~~~~i~~-~~~~~~l~I 102 (289)
-.+.|.|+|+-++|||||+++|.+. +... ... .|...-| ....+.. ++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3478999999999999999999988 4331 011 2333333 2333332 344567899
Q ss_pred EEcCCchhhhcc-----------------------------cccccc-CccEEEEEE-eCC----CHhhHHH-HHHHHHH
Q 040295 103 WMAHLHEEFSIR-----------------------------SLPISD-QLTALVMVF-NLN----DLSTLDA-LKHWVPS 146 (289)
Q Consensus 103 ~Dt~G~e~~~~~-----------------------------~~~~~~-~ad~vIlV~-Dv~----~~~S~~~-l~~~~~~ 146 (289)
.||+|-..-..+ .+..+. .+++.|+|. |.+ .++.+.. -..|+..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999984211110 012233 678888888 654 1233333 3467777
Q ss_pred hhhcCCCeEEEEeeCCCC
Q 040295 147 IDLQKFEILLCIGNKVDL 164 (289)
Q Consensus 147 i~~~~~~~iivvgnK~Dl 164 (289)
++..+. |+++|.||.|-
T Consensus 176 Lk~~~k-PfiivlN~~dp 192 (492)
T TIGR02836 176 LKELNK-PFIILLNSTHP 192 (492)
T ss_pred HHhcCC-CEEEEEECcCC
Confidence 776554 78889999994
No 309
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.48 E-value=2.9e-07 Score=79.44 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=62.8
Q ss_pred hhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhh-hcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCC
Q 040295 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSID-LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADP 188 (289)
Q Consensus 110 ~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~-~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~ 188 (289)
.|......+++.+|++++|+|++++.. .|...+. .....|+++|+||+|+.+.... ..
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~-----~~----------- 81 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKN-----LV----------- 81 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCC-----HH-----------
Confidence 357777888999999999999987541 1222221 1234588999999999642110 00
Q ss_pred cccCCCCCcccCCCCCCCCCCcHHHHHHHHHHH-----HHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 189 DFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC-----TEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
....|+ ...++ +++++||+++ +|++++++.|..
T Consensus 82 ---------------------------~~~~~~~~~~~~~~~~~~~~i~~vSA~~~------------~gi~eL~~~l~~ 122 (190)
T cd01855 82 ---------------------------RIKNWLRAKAAAGLGLKPKDVILISAKKG------------WGVEELINAIKK 122 (190)
T ss_pred ---------------------------HHHHHHHHHHHhhcCCCcccEEEEECCCC------------CCHHHHHHHHHH
Confidence 022232 22333 5899999999 999999999988
Q ss_pred hc
Q 040295 261 HM 262 (289)
Q Consensus 261 ~~ 262 (289)
.+
T Consensus 123 ~l 124 (190)
T cd01855 123 LA 124 (190)
T ss_pred Hh
Confidence 54
No 310
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.47 E-value=2e-06 Score=78.41 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=23.4
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.-.....-|+++|..|+|||||++||..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHH
Confidence 3455567899999999999999999874
No 311
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.44 E-value=6.6e-07 Score=74.65 Aligned_cols=93 Identities=16% Similarity=0.072 Sum_probs=62.0
Q ss_pred hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCccc
Q 040295 112 SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC 191 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~ 191 (289)
+.+.+++.+++|++|+|+|.+++...... .+...+.. ...|+++|+||+|+.+. +..+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-~~~p~iiv~NK~Dl~~~-----~~~~~-------------- 61 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-LGKKLLIVLNKADLVPK-----EVLEK-------------- 61 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-CCCcEEEEEEhHHhCCH-----HHHHH--------------
Confidence 44556778889999999999876433221 22222222 24589999999999531 01111
Q ss_pred CCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 192 QSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+....+.+++.+||+++ .|++++++.|.+.+
T Consensus 62 -------------------------~~~~~~~~~~~~~~iSa~~~------------~gi~~L~~~l~~~~ 95 (156)
T cd01859 62 -------------------------WKSIKESEGIPVVYVSAKER------------LGTKILRRTIKELA 95 (156)
T ss_pred -------------------------HHHHHHhCCCcEEEEEcccc------------ccHHHHHHHHHHHH
Confidence 11333445678999999999 99999999998754
No 312
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.43 E-value=3.2e-06 Score=80.12 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=83.9
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH----------hhHHHHHHHHHHhhh---cCCCeEEEEeeCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL----------STLDALKHWVPSIDL---QKFEILLCIGNKVD 163 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~----------~S~~~l~~~~~~i~~---~~~~~iivvgnK~D 163 (289)
...+.+||.+|+...+..|.+++.+++++|||.|+++. ..++.....+..+-. ....|+||++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35689999999999999999999999999999999963 344444444444432 23349999999999
Q ss_pred CCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHH---cCCeEEEeecCCCcccc
Q 040295 164 LLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE---HRIEYIEACASNVDFDK 240 (289)
Q Consensus 164 l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ie~Sa~~~~~~~ 240 (289)
+. .+++.+-..+.+-|++- |. .+.++...-+++.-...... ..+-...+||.+-
T Consensus 263 ~~---------~~Kl~~~~l~~~fp~y~--------g~--~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt---- 319 (342)
T smart00275 263 LF---------EEKIKKVPLVDYFPDYK--------GP--NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDT---- 319 (342)
T ss_pred hH---------HHHhCCCchhccCCCCC--------CC--CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeeccc----
Confidence 96 33332222222334431 10 01111111122222222221 1233556888877
Q ss_pred cccCCCCchhHHHHHHHHHHhccc
Q 040295 241 CLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 241 ~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.++..+|..+...++.
T Consensus 320 --------~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 320 --------RNIRVVFDAVKDIILQ 335 (342)
T ss_pred --------HHHHHHHHHHHHHHHH
Confidence 8999999988776654
No 313
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.43 E-value=4.2e-06 Score=79.09 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=82.6
Q ss_pred EEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhH-------HHHH---HHHHHhhhc---CCCeEEEEeeCCCC
Q 040295 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTL-------DALK---HWVPSIDLQ---KFEILLCIGNKVDL 164 (289)
Q Consensus 98 ~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~-------~~l~---~~~~~i~~~---~~~~iivvgnK~Dl 164 (289)
..+.++|++||..-+.-|.+.+.+++++|||.+++..+-. ..+. .+.+.|-.. ...++|+..||.||
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 5688999999988888888899999999999998843222 1222 233344322 23389999999999
Q ss_pred CCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc--CCeEEEeecCCCcccccc
Q 040295 165 LPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH--RIEYIEACASNVDFDKCL 242 (289)
Q Consensus 165 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ie~Sa~~~~~~~~~ 242 (289)
.. .++.+.....+=|++ .|.+ ..++...-++.+-.++.... .+=+..++|.+-
T Consensus 275 Fe---------EKi~~~~~~~~Fpdy--~G~~--------~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT------ 329 (354)
T KOG0082|consen 275 FE---------EKIKKVPLTDCFPDY--KGVN--------TYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDT------ 329 (354)
T ss_pred HH---------HHhccCchhhhCcCC--CCCC--------ChHHHHHHHHHHHHHHhcccCCcceEEEEeeccH------
Confidence 74 223222222233333 0111 22233333333333333333 222446788776
Q ss_pred cCCCCchhHHHHHHHHHHhcccC
Q 040295 243 SIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 243 ~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+|+.+|.++...++.+
T Consensus 330 ------~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 330 ------QNVQFVFDAVTDTIIQN 346 (354)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 89999999998877543
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.42 E-value=1.8e-06 Score=87.11 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=70.1
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc-------c-
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDAS---DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI-------R- 114 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~---~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~-------~- 114 (289)
....++|+++|.+||||||++|.+++....... ..|... ........ ...+.++||||...... +
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEEC--CceEEEEECCCCCccccchHHHHHHH
Confidence 455678999999999999999999998643221 122221 11111122 24689999999653311 1
Q ss_pred --cccccc--CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC----eEEEEeeCCCCCC
Q 040295 115 --SLPISD--QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE----ILLCIGNKVDLLP 166 (289)
Q Consensus 115 --~~~~~~--~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~----~iivvgnK~Dl~~ 166 (289)
...+++ .+|++|+|..++.......-..++..+...-++ -+|||.+..|..+
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 112333 579999999876332221222344444433222 5788899999886
No 315
>PRK12289 GTPase RsgA; Reviewed
Probab=98.40 E-value=1.4e-06 Score=82.82 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=69.4
Q ss_pred hhhccccccccCccEEEEEEeCCCHh-hHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCC
Q 040295 110 EFSIRSLPISDQLTALVMVFNLNDLS-TLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADP 188 (289)
Q Consensus 110 ~~~~~~~~~~~~ad~vIlV~Dv~~~~-S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~ 188 (289)
+-..+....++++|.+++|||+.++. .+..+..|+..+...+ .|+++|+||+||.+. +....
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~-ip~ILVlNK~DLv~~-----~~~~~----------- 140 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTG-LEIVLCLNKADLVSP-----TEQQQ----------- 140 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEEEchhcCCh-----HHHHH-----------
Confidence 44445556688999999999998775 5557788887765433 467889999999631 00010
Q ss_pred cccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 189 DFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
........+++++++||+++ .|++++++.|...+
T Consensus 141 ----------------------------~~~~~~~~g~~v~~iSA~tg------------~GI~eL~~~L~~ki 174 (352)
T PRK12289 141 ----------------------------WQDRLQQWGYQPLFISVETG------------IGLEALLEQLRNKI 174 (352)
T ss_pred ----------------------------HHHHHHhcCCeEEEEEcCCC------------CCHHHHhhhhccce
Confidence 22334567889999999999 99999999987644
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.40 E-value=2.9e-06 Score=76.67 Aligned_cols=26 Identities=27% Similarity=0.663 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
...|+++|+.|+||||+++.+.+..+
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 36899999999999999999998763
No 317
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.39 E-value=8.3e-07 Score=84.68 Aligned_cols=98 Identities=20% Similarity=0.290 Sum_probs=69.8
Q ss_pred chhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhc-CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCC
Q 040295 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSA 186 (289)
Q Consensus 108 ~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~-~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~ 186 (289)
.+.|..+...+.+.++++++|+|+.+.. ..|...+... ...|+++|+||+|+.+....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~---------------- 108 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVN---------------- 108 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCC----------------
Confidence 5688888888889999999999997653 2344555443 34589999999999753210
Q ss_pred CCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 187 DPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.....+...+++..+++ .++++||+++ +|+++++..|.+.
T Consensus 109 -----------------------~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g------------~gv~eL~~~l~~~ 151 (360)
T TIGR03597 109 -----------------------LSKIKEWMKKRAKELGLKPVDIILVSAKKG------------NGIDELLDKIKKA 151 (360)
T ss_pred -----------------------HHHHHHHHHHHHHHcCCCcCcEEEecCCCC------------CCHHHHHHHHHHH
Confidence 11111223455677776 3899999999 9999999999753
No 318
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35 E-value=2.3e-06 Score=79.12 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=67.5
Q ss_pred ccccCccEEEEEEeCCCHh-hHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 117 PISDQLTALVMVFNLNDLS-TLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~-S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
..+.++|.+++|+|++++. ++..+..|+..+...+ .|+++|+||+||.+. .....
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~-ip~iIVlNK~DL~~~------~~~~~----------------- 129 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAG-IEPVIVLTKADLLDD------EEEEL----------------- 129 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcC-CCEEEEEEHHHCCCh------HHHHH-----------------
Confidence 4578999999999999888 8899999998776654 467779999999642 01111
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
...+....+++++++||+++ .|+++++..|...
T Consensus 130 ---------------------~~~~~~~~g~~v~~vSA~~g------------~gi~~L~~~L~~k 162 (287)
T cd01854 130 ---------------------ELVEALALGYPVLAVSAKTG------------EGLDELREYLKGK 162 (287)
T ss_pred ---------------------HHHHHHhCCCeEEEEECCCC------------ccHHHHHhhhccc
Confidence 23344557889999999999 9999999887753
No 319
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.32 E-value=7.6e-06 Score=77.21 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=73.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCCcceEEeeEEeecCcceEEEEEEEcCCchhh-------
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA----------SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF------- 111 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~------- 111 (289)
.+.|++||++|.|||||+|.|++...... ..+++........+..++..+.+.+.||||--.+
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 48899999999999999999998743221 2345555666777788888999999999983111
Q ss_pred -------hcccccc------------c--cCccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 112 -------SIRSLPI------------S--DQLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 112 -------~~~~~~~------------~--~~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
......| + ..+||+++....+ +..+..++ ..+..+... .-+|-|.-|+|.+.
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls~~--vNlIPVI~KaD~lT 176 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLSKR--VNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHhcc--cCeeeeeeccccCC
Confidence 0000111 1 1367888888765 33333333 222223222 23566778999986
No 320
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.31 E-value=1.2e-06 Score=72.27 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=36.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
+++++|.+|||||||+|++.+..+.. .....+.......+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887642 222222222222222222 4799999995
No 321
>PRK00098 GTPase RsgA; Reviewed
Probab=98.30 E-value=3.3e-06 Score=78.48 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=63.5
Q ss_pred ccCccEEEEEEeCCCHhhHHH-HHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 119 SDQLTALVMVFNLNDLSTLDA-LKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~-l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
.+++|++++|+|++++..+.. +..|+..+... ..|+++|+||+|+... ....
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~-~ip~iIVlNK~DL~~~-------~~~~------------------- 130 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN-GIKPIIVLNKIDLLDD-------LEEA------------------- 130 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC-CCCEEEEEEhHHcCCC-------HHHH-------------------
Confidence 588999999999988866544 57888777653 3467789999999521 0111
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.....+....+++++++||+++ .|++++++.|...
T Consensus 131 -----------------~~~~~~~~~~g~~v~~vSA~~g------------~gi~~L~~~l~gk 165 (298)
T PRK00098 131 -----------------RELLALYRAIGYDVLELSAKEG------------EGLDELKPLLAGK 165 (298)
T ss_pred -----------------HHHHHHHHHCCCeEEEEeCCCC------------ccHHHHHhhccCc
Confidence 0133455567889999999999 9999999887643
No 322
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=2.5e-05 Score=75.22 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=81.4
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc--CCCCC----------C--------CCCCcceEEeeEEeecCcceEEEEEEEc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS--VNFED----------A--------SDSSSELLVNGWTINTKYYTADVSLWMA 105 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~--~~~~~----------~--------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt 105 (289)
..++-.++|+..|.+|||||-.+++- +-... . ....-|....+-.+..+|..+.+++.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 34445699999999999999999873 11100 0 0111222233334455666788999999
Q ss_pred CCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCC
Q 040295 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 106 ~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~ 169 (289)
||++.|..-....+..+|++|+|.|.-..-.-+.++ +-.+-+.+..||+-..||.|-....+
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcrlR~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCRLRDIPIFTFINKLDREGRDP 150 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHhhcCCceEEEeeccccccCCh
Confidence 999999876666678899999999987542222221 23345556668999999999865443
No 323
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.22 E-value=1.2e-06 Score=79.41 Aligned_cols=56 Identities=23% Similarity=0.190 Sum_probs=32.8
Q ss_pred EEEEEEEcCC--chhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCC
Q 040295 98 ADVSLWMAHL--HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDL 164 (289)
Q Consensus 98 ~~l~I~Dt~G--~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl 164 (289)
+++.|..|.| |.... ...-+|.+++|.-..-.+..+.++.=+.++-. |+|.||.|.
T Consensus 122 ~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD------i~vVNKaD~ 179 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD------IFVVNKADR 179 (266)
T ss_dssp -SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S------EEEEE--SH
T ss_pred CCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc------EEEEeCCCh
Confidence 4566677764 55442 34568999999987766666555543334432 558999996
No 324
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.22 E-value=1e-05 Score=70.35 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.++|.|.|++|+|||+|+.+++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH
Confidence 37899999999999999999774
No 325
>PRK12288 GTPase RsgA; Reviewed
Probab=98.21 E-value=1e-05 Score=76.92 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=66.7
Q ss_pred ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 119 SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
..++|.+++||+++...++..+..|+..+...+. |+++|+||+||.+.. ....+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i-~~VIVlNK~DL~~~~-----~~~~~-------------------- 171 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGI-EPLIVLNKIDLLDDE-----GRAFV-------------------- 171 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCC-CEEEEEECccCCCcH-----HHHHH--------------------
Confidence 4669999999999999999999999886654443 566799999996421 00111
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..........+++++++||+++ +|++++++.|...+
T Consensus 172 ----------------~~~~~~y~~~g~~v~~vSA~tg------------~GideL~~~L~~ki 207 (347)
T PRK12288 172 ----------------NEQLDIYRNIGYRVLMVSSHTG------------EGLEELEAALTGRI 207 (347)
T ss_pred ----------------HHHHHHHHhCCCeEEEEeCCCC------------cCHHHHHHHHhhCC
Confidence 0122333456789999999999 99999999987644
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=5.8e-05 Score=71.59 Aligned_cols=84 Identities=20% Similarity=0.070 Sum_probs=53.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCC-CcceEEeeEEee--------------cCcceEEEEEEEcCCc----
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFE-DASDS-SSELLVNGWTIN--------------TKYYTADVSLWMAHLH---- 108 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~-t~~~~~~~~~i~--------------~~~~~~~l~I~Dt~G~---- 108 (289)
.+++.|+|-||||||||+|.++..... ..|+. |+.....-..+. ..-....+++.|++|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 378999999999999999999987743 22332 222222111111 0112345789999974
Q ss_pred hhhhcccccc---ccCccEEEEEEeCC
Q 040295 109 EEFSIRSLPI---SDQLTALVMVFNLN 132 (289)
Q Consensus 109 e~~~~~~~~~---~~~ad~vIlV~Dv~ 132 (289)
..-..+.+.+ ++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2223344444 67899999999865
No 327
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.16 E-value=2.9e-06 Score=78.03 Aligned_cols=80 Identities=20% Similarity=0.076 Sum_probs=49.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CcceEEeeEEeecCc-------------ceEEEEEEEcCCchhh----h
Q 040295 52 ILIIGSSNVGKRTILSRLLSVNFEDA-SDS-SSELLVNGWTINTKY-------------YTADVSLWMAHLHEEF----S 112 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~~~~~~-~~~-t~~~~~~~~~i~~~~-------------~~~~l~I~Dt~G~e~~----~ 112 (289)
|+|+|.+|||||||+|++++.+.... +.. |.........+.... ....+.++|+||.-.- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999999875322 222 223222222222210 1235899999995321 1
Q ss_pred cccc---ccccCccEEEEEEeC
Q 040295 113 IRSL---PISDQLTALVMVFNL 131 (289)
Q Consensus 113 ~~~~---~~~~~ad~vIlV~Dv 131 (289)
.+.. ..++.+|++++|+|+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 1112 235789999999986
No 328
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.15 E-value=3.6e-06 Score=78.24 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCc---------hhhhccccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLH---------EEFSIRSLP 117 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~---------e~~~~~~~~ 117 (289)
-.-|.++|-.|||||||++.|......+. --.|...+.....+... ..+.+.||-|- ..|.+-. .
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg---~~vlltDTvGFisdLP~~LvaAF~ATL-e 253 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG---NFVLLTDTVGFISDLPIQLVAAFQATL-E 253 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC---cEEEEeechhhhhhCcHHHHHHHHHHH-H
Confidence 36799999999999999999996554322 22344433333333333 24778899873 3444322 2
Q ss_pred cccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC------eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCccc
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE------ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC 191 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~------~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~ 191 (289)
-+..+|.++-|.|+++|.--+....-+.-+.....+ .+|=|=||+|..+.-.
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~---------------------- 311 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV---------------------- 311 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC----------------------
Confidence 356799999999999987666555544444444332 3455789999854211
Q ss_pred CCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 192 QSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
+.+ +++ -+-.||++| .|++++..++-+.....+..++
T Consensus 312 -------------e~E---------------~n~--~v~isaltg------------dgl~el~~a~~~kv~~~t~~~e 348 (410)
T KOG0410|consen 312 -------------EEE---------------KNL--DVGISALTG------------DGLEELLKAEETKVASETTVDE 348 (410)
T ss_pred -------------ccc---------------cCC--ccccccccC------------ccHHHHHHHHHHHhhhhheeee
Confidence 111 122 355699999 9999999988887766665555
No 329
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=2e-05 Score=75.88 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=101.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC---CC--CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFE---DA--SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~---~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
-|+..|.---|||||++.+.+..-. +. ...|+...|+++.... ..+.+.|+||+++|-...-.-+...|.+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d----~~~~fIDvpgh~~~i~~miag~~~~d~a 77 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED----GVMGFIDVPGHPDFISNLLAGLGGIDYA 77 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC----CceEEeeCCCcHHHHHHHHhhhcCCceE
Confidence 3677888899999999999876532 11 2334444444443322 2689999999998865554556678999
Q ss_pred EEEEeCC---CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLN---DLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~---~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+||.|.+ .+++.+.+. -++..+.+..++|.+|+|...... ..+.
T Consensus 78 lLvV~~deGl~~qtgEhL~----iLdllgi~~giivltk~D~~d~~r-----~e~~------------------------ 124 (447)
T COG3276 78 LLVVAADEGLMAQTGEHLL----ILDLLGIKNGIIVLTKADRVDEAR-----IEQK------------------------ 124 (447)
T ss_pred EEEEeCccCcchhhHHHHH----HHHhcCCCceEEEEeccccccHHH-----HHHH------------------------
Confidence 9999996 455555543 244555566788999999975311 1111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+++......-..++|.+|+++| +||+++..+|....
T Consensus 125 -----------i~~Il~~l~l~~~~i~~~s~~~g------------~GI~~Lk~~l~~L~ 161 (447)
T COG3276 125 -----------IKQILADLSLANAKIFKTSAKTG------------RGIEELKNELIDLL 161 (447)
T ss_pred -----------HHHHHhhcccccccccccccccC------------CCHHHHHHHHHHhh
Confidence 11112222223457899999999 99999999998865
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=5.3e-06 Score=83.06 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=81.4
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---------Cc--------ceEEeeEEe---ecCcceEEEEEEEc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDS---------SS--------ELLVNGWTI---NTKYYTADVSLWMA 105 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~---------t~--------~~~~~~~~i---~~~~~~~~l~I~Dt 105 (289)
.+....|+++|+-..|||+|+..|..+..+..+.. +. .....+.++ ..+++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 44556799999999999999999987654332111 11 111111111 23567788999999
Q ss_pred CCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 106 ~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
||+-.|..-....++.+|++|+|+|+-..-.++.-+-....++ +..|+.+|.||+|.+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 9999887766677889999999999998777754433222232 223788899999986
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.13 E-value=8.5e-06 Score=67.91 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
...+++++|.+|+|||||++++.+... ..+.++.+.+.....+... ..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT---SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC---CCEEEEECcCC
Confidence 457899999999999999999997653 3444555544322222222 14899999983
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.11 E-value=8.7e-06 Score=68.13 Aligned_cols=57 Identities=21% Similarity=0.072 Sum_probs=36.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
..++|+++|.+|||||||+|++.+...... ..+.+.+.....+.... .+.+.||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 357899999999999999999998764322 22333322222222211 2679999983
No 333
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.11 E-value=7.5e-06 Score=69.63 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=38.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
..++++++|.+|||||||++++.+..+. ......+.++....+... ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999987763 222222222222222222 24789999994
No 334
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.09 E-value=1.6e-05 Score=68.74 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=102.2
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc--
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH-- 108 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~-- 108 (289)
..||..+++++.+.....+--|.|+|.+|+|||||++.+---+- ++.| .|..++..+.+. -|..|+
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G------~I~v~geei~~k-~~~~G~l~ 81 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAG------SIRVNGEEIRLK-RDKDGQLK 81 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCc------eEEECCeEEEee-eCCCCCee
Confidence 57999999999999999999999999999999999998854332 2333 122222222211 122221
Q ss_pred -------hhhhccc----ccc--------ccC-ccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCC
Q 040295 109 -------EEFSIRS----LPI--------SDQ-LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 109 -------e~~~~~~----~~~--------~~~-ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~ 168 (289)
++.++.. +++ +.+ ..+-+-|..++..+..+.+..++.++. +.+|.|.-+..
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVG---------i~ek~~~YP~~ 152 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVG---------IAEKADAYPAH 152 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhC---------chhhhhcCccc
Confidence 2222111 111 111 235566777777777777777776664 35666655544
Q ss_pred CchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEE--EeecCCCcccccccCCC
Q 040295 169 PVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYI--EACASNVDFDKCLSIDG 246 (289)
Q Consensus 169 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--e~Sa~~~~~~~~~~~~~ 246 (289)
....+.+|.. -++.+|.+-.+-+| .+||.+.
T Consensus 153 LSGGQQQR~a-------------------------------------IARaLameP~vmLFDEPTSALDP---------- 185 (256)
T COG4598 153 LSGGQQQRVA-------------------------------------IARALAMEPEVMLFDEPTSALDP---------- 185 (256)
T ss_pred cCchHHHHHH-------------------------------------HHHHHhcCCceEeecCCcccCCH----------
Confidence 4333333333 16677776666555 3899988
Q ss_pred CchhHHHHHHHHHHhcccCc
Q 040295 247 DSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 247 ~~~~i~~l~~~L~~~~~~~~ 266 (289)
+-+-+++..+-+..-+.+
T Consensus 186 --ElVgEVLkv~~~LAeEgr 203 (256)
T COG4598 186 --ELVGEVLKVMQDLAEEGR 203 (256)
T ss_pred --HHHHHHHHHHHHHHHhCC
Confidence 888888887776655444
No 335
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.06 E-value=1.5e-05 Score=73.68 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.4
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.....+-|.|+|++|+|||||++++++.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455678999999999999999988764
No 336
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=5.9e-05 Score=67.75 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFED---------ASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~---------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
.+.....|.|+++|.+|.|||||+|.+...+... .+..|......+..+.-++..+++.+.||||-
T Consensus 40 ~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 40 TMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred HHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 4455667899999999999999999998654432 23445555556667777888899999999983
No 337
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.5e-05 Score=81.81 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=80.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCC--CC----------------CCCCCcceEEeeEEeecCcceEEEEEEEcCC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNF--ED----------------ASDSSSELLVNGWTINTKYYTADVSLWMAHL 107 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~--~~----------------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G 107 (289)
.+..-.|.|+|+..+|||||..+++...- .. +....+.......+....+ .+.+++.||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 34446799999999999999999985221 10 0111122222222333332 46799999999
Q ss_pred chhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCC
Q 040295 108 HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 108 ~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~ 168 (289)
+-.|..-...-++-+|++|+|+|....-..+.-.-|....+. + .|.|++.||+|.....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-~-vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-G-VPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-C-CCeEEEEECccccccC
Confidence 999987777778899999999999866555555556544432 2 2667789999997543
No 338
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=9.3e-05 Score=70.22 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCCcceEEeeEEeecCcceEEEEEEEcCCchh--------
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA---------SDSSSELLVNGWTINTKYYTADVSLWMAHLHEE-------- 110 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~---------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~-------- 110 (289)
..+.++++|++|.|||||||.|+...+... ...|..+......+..++..+.+.+.||||--.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 348899999999999999999887754321 223555556666777888899999999998311
Q ss_pred ----------hhc-------ccccccc--CccEEEEEEeCCCHhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 111 ----------FSI-------RSLPISD--QLTALVMVFNLNDLSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 111 ----------~~~-------~~~~~~~--~ad~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
|.. +.+.-+. .+|++++....+ +..+..++ ..+..+.. ...+|-|.-|+|.+..
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~~--~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLSK--KVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHhc--cccccceeeccccCCH
Confidence 111 0111122 467888888765 23333333 12222221 1245667789999863
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.03 E-value=1.4e-05 Score=68.48 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=38.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
...++|+++|.+|||||||+|++.+..... .....+.+.....+... ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 345899999999999999999999876422 22333333222222222 24789999983
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.02 E-value=1.1e-05 Score=69.65 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=37.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED-------ASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
....++++|.+|||||||+|.+.+..... ......+.+.....+.... .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 44689999999999999999999864311 1122223333333333332 4789999983
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=4.5e-05 Score=72.19 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=76.2
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcceEEeeEEeecCc--------------------------
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDAS-DSSSELLVNGWTINTKY-------------------------- 95 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~-~~t~~~~~~~~~i~~~~-------------------------- 95 (289)
+.+.....=|+++|.-+.||||||+.|+.++|+... .+....++....+..+.
T Consensus 52 d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~a 131 (532)
T KOG1954|consen 52 DPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNA 131 (532)
T ss_pred CcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHH
Confidence 455666677999999999999999999999986431 11111111111111110
Q ss_pred -------------ceEEEEEEEcCCch-----------hhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC
Q 040295 96 -------------YTADVSLWMAHLHE-----------EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK 151 (289)
Q Consensus 96 -------------~~~~l~I~Dt~G~e-----------~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~ 151 (289)
-.-.+.|.||||.- .|.....=+...+|.+|++||....+-=++....+..++-+.
T Consensus 132 flnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 132 FLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 01237899999842 222233344567999999999765544444444455555444
Q ss_pred CCeEEEEeeCCCCCC
Q 040295 152 FEILLCIGNKVDLLP 166 (289)
Q Consensus 152 ~~~iivvgnK~Dl~~ 166 (289)
. -+-||.||.|...
T Consensus 212 d-kiRVVLNKADqVd 225 (532)
T KOG1954|consen 212 D-KIRVVLNKADQVD 225 (532)
T ss_pred c-eeEEEeccccccC
Confidence 4 4666899999974
No 342
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.96 E-value=0.00053 Score=62.13 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=58.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEEeeEEeecCcceEEEEEEEcCCchh--------hhcccc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLVNGWTINTKYYTADVSLWMAHLHEE--------FSIRSL 116 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~--------~~~~~~ 116 (289)
..--.+|+++|-|+||||||+..+...+.... |..|. .+..+-.+..++ ..+++.|.||.=. -++. -
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQv-i 134 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQV-I 134 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecC--ceEEEecCcccccccccCCCCCceE-E
Confidence 33447899999999999999999987664322 22222 222333444443 4689999998521 1222 2
Q ss_pred ccccCccEEEEEEeCCCHhhHH
Q 040295 117 PISDQLTALVMVFNLNDLSTLD 138 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~ 138 (289)
...+.||.+++|.|.+..+.-.
T Consensus 135 avArtaDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKSEDQR 156 (364)
T ss_pred EEeecccEEEEEecCCcchhHH
Confidence 4467899999999998665443
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.95 E-value=4.2e-05 Score=63.96 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=32.2
Q ss_pred cccCccEEEEEEeCCCHhh--HHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 118 ISDQLTALVMVFNLNDLST--LDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S--~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.++.+|.+++|.|++++.. ...+..++... ....|+|+|.||+|+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~--~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE--KPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhc--cCCCCEEEEEEchhcCC
Confidence 3568999999999998632 33444444321 22358899999999964
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.92 E-value=3.7e-05 Score=63.23 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=35.2
Q ss_pred ccccCccEEEEEEeCCCHhhHH--HHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLD--ALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~--~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..++.+|++++|+|++++.+.. .+..|+.... ...|+++|.||+|+.+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~--~~k~~iivlNK~DL~~ 56 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD--PRKKNILLLNKADLLT 56 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc--CCCcEEEEEechhcCC
Confidence 3467899999999999876654 4555555431 3458999999999953
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.92 E-value=0.0001 Score=68.15 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=89.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCC-----------CCCCCCCcceEEee---------------EEeec-------
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNF-----------EDASDSSSELLVNG---------------WTINT------- 93 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~-----------~~~~~~t~~~~~~~---------------~~i~~------- 93 (289)
..-..|.|-|.||+|||||+..|...=+ .+.+..|.|..... ..+..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 3346899999999999999999874211 11122233321110 01111
Q ss_pred -----------CcceEEEEEEEcCC--chhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEee
Q 040295 94 -----------KYYTADVSLWMAHL--HEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGN 160 (289)
Q Consensus 94 -----------~~~~~~l~I~Dt~G--~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgn 160 (289)
+...+++.|..|.| |... .....+|.+++|.=..-.+..+-++.=+.++.. |+|.|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev-----~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------i~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV-----DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------IIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchh-----HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------eeeEe
Confidence 11235567777764 3333 234568999988866666666666654445543 55899
Q ss_pred CCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHH----HH--cCCeEEEeecC
Q 040295 161 KVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC----TE--HRIEYIEACAS 234 (289)
Q Consensus 161 K~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~ie~Sa~ 234 (289)
|.|..... ...+.+ +.+..+. .. +.-+.+.|||.
T Consensus 198 KaD~~~A~----~a~r~l------------------------------------~~al~~~~~~~~~~~W~ppv~~t~A~ 237 (323)
T COG1703 198 KADRKGAE----KAAREL------------------------------------RSALDLLREVWRENGWRPPVVTTSAL 237 (323)
T ss_pred ccChhhHH----HHHHHH------------------------------------HHHHHhhcccccccCCCCceeEeeec
Confidence 99963211 111222 0011111 12 23469999999
Q ss_pred CCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 235 NVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+ +|++++++++..+.
T Consensus 238 ~g------------~Gi~~L~~ai~~h~ 253 (323)
T COG1703 238 EG------------EGIDELWDAIEDHR 253 (323)
T ss_pred cC------------CCHHHHHHHHHHHH
Confidence 99 99999999998765
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.90 E-value=5.6e-05 Score=63.15 Aligned_cols=83 Identities=20% Similarity=0.168 Sum_probs=53.5
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHH-HhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVP-SIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~-~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
|.+++|+|++++.+.... |+. ........|+|+|.||+|+.+. +.....
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~~~~p~IiVlNK~Dl~~~-----~~~~~~----------------------- 50 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKEKGKKLILVLNKADLVPK-----EVLRKW----------------------- 50 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhcCCCCEEEEEechhcCCH-----HHHHHH-----------------------
Confidence 689999999987655422 333 2222234589999999999631 110111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
...+....+..++.+||+++ .|++++++.+.+..
T Consensus 51 ---------------~~~~~~~~~~~ii~vSa~~~------------~gi~~L~~~i~~~~ 84 (155)
T cd01849 51 ---------------LAYLRHSYPTIPFKISATNG------------QGIEKKESAFTKQT 84 (155)
T ss_pred ---------------HHHHHhhCCceEEEEeccCC------------cChhhHHHHHHHHh
Confidence 12233333456889999999 99999999887653
No 347
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.89 E-value=3.3e-05 Score=70.99 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=38.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
..++++++|.+|||||||+|++.+...... ....+.+.....+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 458999999999999999999998764322 22233322222222221 3789999997
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.89 E-value=3.8e-05 Score=71.00 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=39.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCch
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e 109 (289)
...++|+++|.+|||||||+|++.+..... .....+.+.....+... -.+.++||||.-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLG---KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeC---CcEEEEECCCcC
Confidence 356899999999999999999999876432 22333333322222222 147899999974
No 349
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00015 Score=71.94 Aligned_cols=118 Identities=10% Similarity=0.142 Sum_probs=76.3
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
.....+.+-|+|+||+|+||||||+.+...-.. .|+.....++++ ..++.-.+.+..+| ....++. ...+-|
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTv-vsgK~RRiTflEcp--~Dl~~mi-DvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITV-VSGKTRRITFLECP--SDLHQMI-DVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceEE-eecceeEEEEEeCh--HHHHHHH-hHHHhh
Confidence 334556677889999999999999988754211 122211122222 23455678888887 3444433 445679
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~ 169 (289)
|.+++..|.+-.-..+.+ .++.-+..++.|-|+.|.+..|+.....
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhhcCCCceEEEEeecccccChH
Confidence 999999998754222222 3455566777778999999999987643
No 350
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00022 Score=64.16 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=70.6
Q ss_pred cccccCCC--ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeE-Ee-ecCcceEEEEEEEcCCchhh-hccc-
Q 040295 42 DRASLEKR--PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW-TI-NTKYYTADVSLWMAHLHEEF-SIRS- 115 (289)
Q Consensus 42 ~~~~~~~~--iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~-~i-~~~~~~~~l~I~Dt~G~e~~-~~~~- 115 (289)
+...+..+ .+|+++|-..+||||+.+-....- .+. .|.-.+.... .. ..-..-+.+++||.|||-.| ....
T Consensus 18 ~~~~~~~~~kp~ilLMG~rRsGKsSI~KVVFhkM-sPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D 94 (347)
T KOG3887|consen 18 EDAEADSGMKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFD 94 (347)
T ss_pred cccCccCCCCceEEEEeecccCcchhhheeeecc-CCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccC
Confidence 44444444 679999999999999876654332 111 0111110000 00 01113467999999999633 2222
Q ss_pred -cccccCccEEEEEEeCCCHhhHHHHHHHHHHhh-hcC--CC-eEEEEeeCCCCCC
Q 040295 116 -LPISDQLTALVMVFNLNDLSTLDALKHWVPSID-LQK--FE-ILLCIGNKVDLLP 166 (289)
Q Consensus 116 -~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~-~~~--~~-~iivvgnK~Dl~~ 166 (289)
...++++-|.|+|.|.. -+-.+.+.++...+. .++ +. -+=|...|.|-+.
T Consensus 95 ~e~iF~~~gALifvIDaQ-ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 95 YEMIFRGVGALIFVIDAQ-DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred HHHHHhccCeEEEEEech-HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 34578899999999975 445556665555542 222 22 3455679999875
No 351
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.76 E-value=8.6e-05 Score=61.98 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
....+++++|.+|||||||+|.+.+..... ...+....... .+... ..+.+.||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence 345789999999999999999999876321 11111111111 11111 24789999983
No 352
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00043 Score=63.94 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=71.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC-------CCCC--C-----CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV-------NFED--A-----SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS 115 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~-------~~~~--~-----~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~ 115 (289)
.+|..+|.-.-|||||...+..- .+.. + ....-+....+..+........+-..|+||+..|-..+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNM 92 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNM 92 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHH
Confidence 68999999999999998876531 1100 0 01111222222222222223456678999999886655
Q ss_pred cccccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 116 LPISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
-.-..+.|+.|||.+.++ |++-+.+- ..+..+.+-++++.||+|+..
T Consensus 93 ItgAaqmDgAILVVsA~dGpmPqTrEHiL----larqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 93 ITGAAQMDGAILVVAATDGPMPQTREHIL----LARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred hhhHHhcCccEEEEEcCCCCCCcchhhhh----hhhhcCCcEEEEEEecccccC
Confidence 555667899999999886 55555542 123345556888899999975
No 353
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.0001 Score=66.54 Aligned_cols=44 Identities=30% Similarity=0.336 Sum_probs=40.0
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
..||...++++.+.+..++--|+|+|+||||||||++-+.+-..
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46787899999999999999999999999999999999987664
No 354
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=6.2e-05 Score=70.86 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=40.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
.+++.|+|-+|||||||||+|.+... ....+..|.+.....+..... +.++||||.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 47899999999999999999999876 333334455443333333322 899999995
No 355
>PRK13796 GTPase YqeH; Provisional
Probab=97.68 E-value=0.00016 Score=69.21 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=61.1
Q ss_pred hhhhccccccccCcc-EEEEEEeCCCHhhHHHHHHHHHHhhhc-CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCC
Q 040295 109 EEFSIRSLPISDQLT-ALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSA 186 (289)
Q Consensus 109 e~~~~~~~~~~~~ad-~vIlV~Dv~~~~S~~~l~~~~~~i~~~-~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~ 186 (289)
+.|....... ..++ .+++|+|+.+.. ..|...+... ...|+++|+||+|+.+...
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~----------------- 113 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSV----------------- 113 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCcc-----------------
Confidence 4555444333 3444 899999987642 2355555443 2458899999999975211
Q ss_pred CCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 187 DPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
..+....-...+++.+++ .++.+||+++ .|++++++.|.+.
T Consensus 114 ----------------------~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g------------~gI~eL~~~I~~~ 157 (365)
T PRK13796 114 ----------------------KKNKVKNWLRQEAKELGLRPVDVVLISAQKG------------HGIDELLEAIEKY 157 (365)
T ss_pred ----------------------CHHHHHHHHHHHHHhcCCCcCcEEEEECCCC------------CCHHHHHHHHHHh
Confidence 001111113445666676 5789999999 9999999999764
No 356
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.64 E-value=4.7e-05 Score=69.58 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=64.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEEeeEEeecCcceEEEEEEEcCC----------chhhhcc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLVNGWTINTKYYTADVSLWMAHL----------HEEFSIR 114 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G----------~e~~~~~ 114 (289)
....+.++++|.+|||||||++.+...+.... ..++.+... .++.-.-.-.+.+.|.|| .+.+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 46678999999999999999999998764432 222332211 111111122467778888 2344444
Q ss_pred ccccccCc---cEEEEEEeCCCHhhHHHHHH-HHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 115 SLPISDQL---TALVMVFNLNDLSTLDALKH-WVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 115 ~~~~~~~a---d~vIlV~Dv~~~~S~~~l~~-~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
...|+.+- -.+.+..|++-+ ++..+. .+..+.+.+ -|+-+|.||||...+
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~~-VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGENN-VPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhcC-CCeEEeeehhhhhhh
Confidence 55554332 244455565532 222211 122233322 378889999998643
No 357
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.62 E-value=0.00014 Score=79.16 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCCcc-eEEeeEEeecCcceEEEEEEEcCCch--------hhhcc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDAS------DSSSE-LLVNGWTINTKYYTADVSLWMAHLHE--------EFSIR 114 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~------~~t~~-~~~~~~~i~~~~~~~~l~I~Dt~G~e--------~~~~~ 114 (289)
.=.+|+|++|+||||++++- +.+|+-.. ....+ .....+-+.. +-.++||+|.. .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~-----~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD-----EAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC-----CEEEEcCCCccccCCCcccccHHH
Confidence 44899999999999999987 44553211 00111 1111222222 25688999832 11112
Q ss_pred cccc---------ccCccEEEEEEeCCCHh-----hH----HHHHHHHHHhhhc-CCC-eEEEEeeCCCCCCC
Q 040295 115 SLPI---------SDQLTALVMVFNLNDLS-----TL----DALKHWVPSIDLQ-KFE-ILLCIGNKVDLLPG 167 (289)
Q Consensus 115 ~~~~---------~~~ad~vIlV~Dv~~~~-----S~----~~l~~~~~~i~~~-~~~-~iivvgnK~Dl~~~ 167 (289)
|..+ -+..+|+|+++|+.+.- .. ..++..+.++... +.. ||+||.+|+|++++
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2222 24579999999987432 11 2333444555433 333 99999999999865
No 358
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.59 E-value=7.5e-05 Score=63.47 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
-.++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999999874
No 359
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00082 Score=67.96 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=68.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEE----------eeE-----------Eee-------c---Ccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLV----------NGW-----------TIN-------T---KYY 96 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~----------~~~-----------~i~-------~---~~~ 96 (289)
..||+|.|+.++||||++|.++.++..+. ..+++.... +-. +++ . .+.
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 37999999999999999999998765432 111111000 000 000 0 000
Q ss_pred e----------------EEEEEEEcCCch---hhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEE
Q 040295 97 T----------------ADVSLWMAHLHE---EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLC 157 (289)
Q Consensus 97 ~----------------~~l~I~Dt~G~e---~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iiv 157 (289)
. -.+.+.|.||.. .+.+-.......+|++|||....+..+..+- +++...... .|.|.+
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~-KpniFI 266 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE-KPNIFI 266 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc-CCcEEE
Confidence 0 024455777753 3333334556789999999988776555443 344444443 335666
Q ss_pred EeeCCCCCCC
Q 040295 158 IGNKVDLLPG 167 (289)
Q Consensus 158 vgnK~Dl~~~ 167 (289)
+-||+|....
T Consensus 267 lnnkwDasas 276 (749)
T KOG0448|consen 267 LNNKWDASAS 276 (749)
T ss_pred Eechhhhhcc
Confidence 8899999754
No 360
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.52 E-value=0.00087 Score=58.50 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=35.2
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
.+++...+++.+++-=+-++|+||+|||||++.+.....
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 458899999999999999999999999999999987664
No 361
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.50 E-value=0.00024 Score=60.31 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=56.5
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
...++.+|.+++|+|.+++..-... .+...+ ...|+++|.||+|+.+. +....
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~---~~k~~ilVlNK~Dl~~~-----~~~~~------------------ 66 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL---GNKPRIIVLNKADLADP-----KKTKK------------------ 66 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh-hhHhHh---cCCCEEEEEehhhcCCh-----HHHHH------------------
Confidence 4557889999999999876432211 122222 23478899999999531 00000
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..++....+..++.+||+++ .|++++...|...+
T Consensus 67 ---------------------~~~~~~~~~~~vi~iSa~~~------------~gi~~L~~~l~~~l 100 (171)
T cd01856 67 ---------------------WLKYFESKGEKVLFVNAKSG------------KGVKKLLKAAKKLL 100 (171)
T ss_pred ---------------------HHHHHHhcCCeEEEEECCCc------------ccHHHHHHHHHHHH
Confidence 11222233456899999999 99999999998864
No 362
>PRK12288 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00019 Score=68.32 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 040295 52 ILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
++|+|.||||||||||+|++...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccc
Confidence 89999999999999999997653
No 363
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.44 E-value=0.00083 Score=64.64 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=49.7
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH----------hhHHHHHHHHHHhhh---cCCCeEEEEeeCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL----------STLDALKHWVPSIDL---QKFEILLCIGNKVD 163 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~----------~S~~~l~~~~~~i~~---~~~~~iivvgnK~D 163 (289)
...+.++|++||..-+.-|.+++.+++++|||.++++- ..+.+.......+-. ....|+||+.||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 46789999999988888899999999999999997631 112222333333322 23459999999999
Q ss_pred CC
Q 040295 164 LL 165 (289)
Q Consensus 164 l~ 165 (289)
+.
T Consensus 315 ~f 316 (389)
T PF00503_consen 315 LF 316 (389)
T ss_dssp HH
T ss_pred HH
Confidence 96
No 364
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00012 Score=64.94 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=38.7
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.-||...++++.++...++--.+++||+|||||||++.|-.-.
T Consensus 15 ~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 3589999999999999999999999999999999999986554
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=97.41 E-value=0.00027 Score=67.35 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 040295 52 ILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
++|+|+||||||||||.|++...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccc
Confidence 89999999999999999997653
No 366
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0003 Score=71.68 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=78.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC--------------CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED--------------ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS 115 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~--------------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~ 115 (289)
-.|+++-.-.-|||||+..|+..+-.. .-.++-|.+...-.|....+.+.+.+.|+||+-.|.+..
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 459999999999999999998644311 112334444444444544456789999999999999888
Q ss_pred cccccCccEEEEEEeCCC---HhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCC
Q 040295 116 LPISDQLTALVMVFNLND---LSTLDALK-HWVPSIDLQKFEILLCIGNKVDL 164 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~---~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl 164 (289)
.+..+-+|++++..|+.. .++..-++ -|.+.++ .++|.||+|.
T Consensus 90 ssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~------~~lvinkidr 136 (887)
T KOG0467|consen 90 SSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK------PILVINKIDR 136 (887)
T ss_pred hhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc------eEEEEehhhh
Confidence 777888999999999874 45555554 3655444 4668999993
No 367
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.37 E-value=0.001 Score=62.61 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..--|+++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998864
No 368
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.36 E-value=0.00033 Score=63.40 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
-.++++|.+|||||||+|++.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468999999999999999999764
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.35 E-value=0.00082 Score=59.95 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=39.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC--CCCCC---CCCCcceEEeeEEeecCcceEEEEEEEcCCchh
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV--NFEDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~--~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~ 110 (289)
.-|+|+|++++|||+|+|++++. .|... ...|.|.-.....+.. +....+.+.||+|...
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~ 72 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCc
Confidence 45899999999999999999998 66422 2233443332222211 2235789999999753
No 370
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.31 E-value=0.00045 Score=66.00 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=36.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCCcceEEeeEEeecCcceEEEEEEEcCCchh
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFED----ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~----~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~ 110 (289)
+.+++++|.+|||||||+|++++..... ......+.+.....+.... .+.++||||...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 3589999999999999999999754211 1122222222222222211 257999999643
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.30 E-value=0.0012 Score=60.71 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=56.7
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
...++.+|++++|.|...+.+-... ++..+. ...|+|+|.||+|+.+. .....
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l--~~kp~IiVlNK~DL~~~-----~~~~~------------------ 68 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR--GNKPRLIVLNKADLADP-----AVTKQ------------------ 68 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH--CCCCEEEEEEccccCCH-----HHHHH------------------
Confidence 3567889999999999876443221 111111 24588999999999531 00000
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+.....+.+++.+||+++ .|+.++.+.|.+.+
T Consensus 69 ---------------------~~~~~~~~~~~vi~iSa~~~------------~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 69 ---------------------WLKYFEEKGIKALAINAKKG------------KGVKKIIKAAKKLL 102 (276)
T ss_pred ---------------------HHHHHHHcCCeEEEEECCCc------------ccHHHHHHHHHHHH
Confidence 11122334567899999999 99999998887755
No 372
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.00022 Score=67.44 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=39.2
Q ss_pred heecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 30 VLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
...||...+++..+.+.+.+--++++||+|||||||++.+.+-+-
T Consensus 10 ~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357887558888999999999999999999999999999987653
No 373
>PRK13796 GTPase YqeH; Provisional
Probab=97.28 E-value=0.00038 Score=66.60 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=35.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCCcceEEeeEEeecCcceEEEEEEEcCCch
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFED----ASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~----~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e 109 (289)
..++.|+|.+|||||||+|+|+...... ...+..|++.....+...+. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4579999999999999999998643111 11122222222222222211 4799999973
No 374
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00024 Score=67.49 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=40.8
Q ss_pred heecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 30 VLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
...||...++++.+.++.++--++++|||||||||+++.+.+-+.
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467998999999999999998899999999999999999987664
No 375
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.26 E-value=0.00068 Score=64.84 Aligned_cols=83 Identities=12% Similarity=-0.102 Sum_probs=53.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCC-CC-CCCCC-cceEEeeEEeecC-------------cceEEEEEEEcCCchhh--
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNF-ED-ASDSS-SELLVNGWTINTK-------------YYTADVSLWMAHLHEEF-- 111 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~-~~-~~~~t-~~~~~~~~~i~~~-------------~~~~~l~I~Dt~G~e~~-- 111 (289)
+|+.|+|.||+|||||++.+.+... .. .|..+ +........+.+. -....+.+.|.||.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998875 32 23333 3322222222221 01245789999985321
Q ss_pred --hcccc---ccccCccEEEEEEeCC
Q 040295 112 --SIRSL---PISDQLTALVMVFNLN 132 (289)
Q Consensus 112 --~~~~~---~~~~~ad~vIlV~Dv~ 132 (289)
..+.+ ..++.+|+++.|.+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 11222 3477899999999974
No 376
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.00059 Score=67.57 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=37.0
Q ss_pred eecCCcc-cccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 31 LIFGRQE-MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 31 ~~~g~~~-~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..||... ++++.+++.+.+-||+|+|++||||||+++.++.
T Consensus 359 f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 359 FSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred EEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567766 9999999999999999999999999999999874
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=97.24 E-value=0.0018 Score=61.77 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=38.3
Q ss_pred cccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
...++|.+++|+++...-....+..++..+...+.+| ++|.||+||.+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~ 156 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEP-VIVLTKADLCE 156 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCE-EEEEEChhcCC
Confidence 3578999999999986666667778888887777766 45899999964
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.19 E-value=0.002 Score=59.25 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=38.4
Q ss_pred eEEEEEEEcCCchhhhccc------------cccccCccEEEEEEeCCC-HhhHHHHHHHHHHhhhcCCCeEEEEeeCCC
Q 040295 97 TADVSLWMAHLHEEFSIRS------------LPISDQLTALVMVFNLND-LSTLDALKHWVPSIDLQKFEILLCIGNKVD 163 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~------------~~~~~~ad~vIlV~Dv~~-~~S~~~l~~~~~~i~~~~~~~iivvgnK~D 163 (289)
.+++.|.||||........ ...-..+|.+++|.|.+- .+.+..+..+...+ ++--+|.||.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-----~~~g~IlTKlD 228 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-----GLTGIILTKLD 228 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-----CCCEEEEEccC
Confidence 3678999999965332211 011224889999999973 34444443333222 23455789999
Q ss_pred CCC
Q 040295 164 LLP 166 (289)
Q Consensus 164 l~~ 166 (289)
...
T Consensus 229 e~~ 231 (272)
T TIGR00064 229 GTA 231 (272)
T ss_pred CCC
Confidence 964
No 379
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.18 E-value=0.0025 Score=54.89 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=67.0
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcc-eEEeeEEeecCcceEEEEEEEcC-Cc
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSE-LLVNGWTINTKYYTADVSLWMAH-LH 108 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~I~Dt~-G~ 108 (289)
..||...++.. .....++-.++|+|++|+|||||++.+.+-..+ +.| ..+....+. +..+-.... |+
T Consensus 8 ~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i~-----~~~q~~~LSgGq 76 (177)
T cd03222 8 KRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-----NGDNDEWDGITPV-----YKPQYIDLSGGE 76 (177)
T ss_pred EEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCcEEEECCEEEE-----EEcccCCCCHHH
Confidence 45777666654 467888899999999999999999999876432 222 122111100 000000122 22
Q ss_pred hhhhccccccccCccEEEEEEeC-C---CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCC
Q 040295 109 EEFSIRSLPISDQLTALVMVFNL-N---DLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163 (289)
Q Consensus 109 e~~~~~~~~~~~~ad~vIlV~Dv-~---~~~S~~~l~~~~~~i~~~~~~~iivvgnK~D 163 (289)
..--.+....+...+ ++++|= + |+.+-+.+..++..+.......+|++....+
T Consensus 77 ~qrv~laral~~~p~--lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 77 LQRVAIAAALLRNAT--FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred HHHHHHHHHHhcCCC--EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 222233344455555 444452 2 6777777777777775543345666555443
No 380
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0066 Score=57.29 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=70.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc-------CCCCC--CC-----CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS-------VNFED--AS-----DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~-------~~~~~--~~-----~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~ 113 (289)
+-.+|.-+|.-.-|||||-..+.. .++.. +. ...-|.......+.+....-..-=.|+||+..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 346789999999999999877653 11110 00 01111222222222221122233469999998866
Q ss_pred cccccccCccEEEEEEeCCCH---hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 114 RSLPISDQLTALVMVFNLNDL---STLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~~~---~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..-.-..+.|++|+|+..+|. ++-+.+- ..+.-+.+.++|..||.|+.+
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlL----LArQVGV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLL----LARQVGVKHIVVFINKVDLVD 184 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHH----HHHHcCCceEEEEEecccccC
Confidence 665667788999999999974 4444432 223335567888999999974
No 381
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.12 E-value=0.0011 Score=61.46 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
-.++++|++|||||||+|.+++...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4699999999999999999998654
No 382
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.12 E-value=0.0021 Score=59.46 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=56.7
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
...++.+|++++|.|...+.+.+. .++.... ...|+++|.||+|+.+. ...+.
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~--~~kp~iiVlNK~DL~~~-----~~~~~------------------ 71 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII--GNKPRLLILNKSDLADP-----EVTKK------------------ 71 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh--CCCCEEEEEEchhcCCH-----HHHHH------------------
Confidence 356788999999999987644322 1122221 14588999999999531 00000
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..++....+.+++.+||+++ .|+.++.+.+...+
T Consensus 72 ---------------------~~~~~~~~~~~vi~vSa~~~------------~gi~~L~~~l~~~l 105 (287)
T PRK09563 72 ---------------------WIEYFEEQGIKALAINAKKG------------QGVKKILKAAKKLL 105 (287)
T ss_pred ---------------------HHHHHHHcCCeEEEEECCCc------------ccHHHHHHHHHHHH
Confidence 11222334567899999999 99999998887754
No 383
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.11 E-value=0.0051 Score=56.07 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEEeeEEeecCcceEEEEEEEcCCch--------hhhcccccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLVNGWTINTKYYTADVSLWMAHLHE--------EFSIRSLPISD 120 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e--------~~~~~~~~~~~ 120 (289)
.||.++|-|++||||++..+.+...... |..|.- ...+-.+ .++..++++.|.||.= +-+++. ...+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl-~~vpG~~--~y~gaKiqlldlpgiiegakdgkgrg~qvi-avar 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTL-TTVPGVI--RYKGAKIQLLDLPGIIEGAKDGKGRGKQVI-AVAR 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeE-EEecceE--eccccceeeecCcchhcccccCCCCccEEE-EEee
Confidence 3799999999999999999976543322 222211 1112222 2334679999999741 112222 3456
Q ss_pred CccEEEEEEeCCCHhhHHHHH
Q 040295 121 QLTALVMVFNLNDLSTLDALK 141 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~ 141 (289)
.+..+++|.|+-.|-+-..+-
T Consensus 136 tcnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred cccEEEEEeeccCcccHHHHH
Confidence 789999999999887776654
No 384
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.09 E-value=0.0041 Score=55.83 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=43.9
Q ss_pred EEEEEEcC-CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 99 DVSLWMAH-LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 99 ~l~I~Dt~-G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
++.+.||- |.|.|. +...+++|.+|+|.|.+ .+++....+...-......+++.+|.||.|-.
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 35566664 667664 35678899999999987 55665555544444444457899999999973
No 385
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00047 Score=60.28 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=35.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++ .++|+|++|+|||||++.+.+-.
T Consensus 9 ~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 9 RYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 355556788899999999 99999999999999999998754
No 386
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.08 E-value=0.00088 Score=62.18 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh
Q 040295 52 ILIIGSSNVGKRTILSRLLS------VNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~ 111 (289)
.+++|.||||||||+|+|.. ++.+......-=++.....+...+.. .|.||||...|
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
No 387
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00055 Score=61.46 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=37.5
Q ss_pred eec-CCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 31 LIF-GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 31 ~~~-g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..| |+..+++..+....++--|+|+|++|+|||||++.+.+
T Consensus 11 k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 11 KTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 356 88889999999999999999999999999999999976
No 388
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.07 E-value=0.0006 Score=61.02 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=34.3
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
.+++..+.+..++--|+|+|+||||||||++.+.+-.-
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 67888999999999999999999999999999976553
No 389
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.06 E-value=0.00058 Score=59.51 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=36.8
Q ss_pred ecCC-cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR-QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~-~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555 56888899999999999999999999999999998764
No 390
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.06 E-value=0.00057 Score=60.45 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 9 YYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456667888899999999999999999999999999998764
No 391
>PRK14974 cell division protein FtsY; Provisional
Probab=97.06 E-value=0.0019 Score=61.19 Aligned_cols=64 Identities=16% Similarity=0.027 Sum_probs=36.1
Q ss_pred EEEEEEEcCCchhhhc-cc---ccc--ccCccEEEEEEeCCCH-hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 98 ADVSLWMAHLHEEFSI-RS---LPI--SDQLTALVMVFNLNDL-STLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 98 ~~l~I~Dt~G~e~~~~-~~---~~~--~~~ad~vIlV~Dv~~~-~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+++.+.||+|...... +. ..+ ....+.+++|.|.+-. +..+.+..+...+. +--+|.||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~-----~~giIlTKlD~~~ 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVG-----IDGVILTKVDADA 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCC-----CCEEEEeeecCCC
Confidence 4689999999653211 11 111 2247889999998753 22333333222221 2344689999965
No 392
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.06 E-value=0.00059 Score=58.76 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=35.9
Q ss_pred cCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 33 ~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35556788899999999999999999999999999998754
No 393
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.0006 Score=60.08 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456667888899999999999999999999999999998754
No 394
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00056 Score=60.89 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=37.0
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456566888899999999999999999999999999998754
No 395
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.05 E-value=0.0017 Score=61.06 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=52.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CcceEEeeEEeec-------------CcceEEEEEEEcCCchhh-
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDS-SSELLVNGWTINT-------------KYYTADVSLWMAHLHEEF- 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~-t~~~~~~~~~i~~-------------~~~~~~l~I~Dt~G~e~~- 111 (289)
..+|+.|+|-+|||||||+|.+.+...... ++. |+........+.. ......++++|++|.-+-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 458999999999999999999998765322 221 2222222222211 122456899999985322
Q ss_pred ---hccccc---cccCccEEEEEEeCC
Q 040295 112 ---SIRSLP---ISDQLTALVMVFNLN 132 (289)
Q Consensus 112 ---~~~~~~---~~~~ad~vIlV~Dv~ 132 (289)
..+.+. -++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 222233 367789998888743
No 396
>PRK13695 putative NTPase; Provisional
Probab=97.05 E-value=0.0095 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+||+|.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 397
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.05 E-value=0.00053 Score=60.30 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=36.5
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 9 GYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred ecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556788899999999999999999999999999987654
No 398
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.05 E-value=0.00061 Score=59.51 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=36.3
Q ss_pred ecCC--cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR--QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~--~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 8 SYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3554 56788899999999999999999999999999998764
No 399
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.04 E-value=0.0006 Score=59.86 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=34.5
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 46788899999999999999999999999999998764
No 400
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00062 Score=59.60 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=36.5
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556788899999999999999999999999999998754
No 401
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.04 E-value=0.00064 Score=59.46 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=37.0
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455567888899999999999999999999999999998764
No 402
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.04 E-value=0.00062 Score=62.09 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=38.3
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..|+...++++.+++..++--++|+||.|||||||++.+.+-
T Consensus 10 ~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 10 FGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 467888899999999999999999999999999999999874
No 403
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.02 E-value=0.0007 Score=59.17 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 9 SFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556788899999999999999999999999999998764
No 404
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.01 E-value=0.00065 Score=59.05 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 7 KFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455556888899999999999999999999999999998764
No 405
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00065 Score=59.35 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 9 RFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556788899999999999999999999999999998764
No 406
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.00 E-value=0.00071 Score=59.96 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456556888899999999999999999999999999998764
No 407
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.99 E-value=0.00074 Score=60.36 Aligned_cols=47 Identities=21% Similarity=0.115 Sum_probs=41.7
Q ss_pred hhhheecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 27 FVRVLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 27 ~~~~~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
......||...++++.++...++-.++|+|+.|+|||||++.+.+..
T Consensus 25 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred HHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33457888888999999999999999999999999999999998764
No 408
>PRK00098 GTPase RsgA; Reviewed
Probab=96.99 E-value=0.0013 Score=61.14 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
+..++++|++|||||||+|.+++...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 44699999999999999999987653
No 409
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.00073 Score=57.02 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=36.6
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 9 RFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556888899999999999999999999999999998765
No 410
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00072 Score=61.52 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=37.3
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 21 ~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 21 RYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456667888999999999999999999999999999998764
No 411
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.00073 Score=60.84 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=38.8
Q ss_pred eecCCcc----cccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 31 LIFGRQE----MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 31 ~~~g~~~----~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
..|+... ++++.+++..++-.+.|+|++|||||||.+.+.+-.-
T Consensus 11 ~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred EEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4566666 9999999999999999999999999999999987653
No 412
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.98 E-value=0.00078 Score=60.12 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=36.4
Q ss_pred ecC-CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFG-RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g-~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+ ...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 10 VYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 355 456888899999999999999999999999999998754
No 413
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.98 E-value=0.00072 Score=59.22 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=36.5
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 455556788899999999999999999999999999998754
No 414
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.98 E-value=0.00073 Score=60.06 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=36.4
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 9 RFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 355556788899999999999999999999999999998754
No 415
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.96 E-value=0.00084 Score=59.22 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=33.9
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5788899999999999999999999999999998764
No 416
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00083 Score=59.83 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=36.7
Q ss_pred ecCC-cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR-QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~-~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 9 TYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred ecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4554 56788899999999999999999999999999998764
No 417
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.95 E-value=0.00081 Score=58.31 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356667888899999999999999999999999999998764
No 418
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00082 Score=60.09 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=37.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 11 FYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456667888899999999999999999999999999998764
No 419
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.95 E-value=0.00082 Score=59.55 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=37.0
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 9 YYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456567888899999999999999999999999999998764
No 420
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.00084 Score=58.39 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355556888899999999999999999999999999998764
No 421
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.94 E-value=0.00084 Score=59.87 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=36.3
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+.
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35555678889999999999999999999999999999876
No 422
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.92 E-value=0.00078 Score=59.80 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=39.3
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 30 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred hhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3788888999999999999999999999999999999998754
No 423
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.00083 Score=59.16 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=34.2
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788889999999999999999999999999998764
No 424
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.92 E-value=0.0009 Score=58.36 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 9 TYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 355567888899999999999999999999999999998764
No 425
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00085 Score=59.93 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 12 AYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356567888899999999999999999999999999998764
No 426
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00089 Score=60.69 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 10 DYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556788899999999999999999999999999998764
No 427
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00084 Score=60.72 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=37.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 13 YYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456567888899999999999999999999999999998864
No 428
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.91 E-value=0.00096 Score=58.65 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=36.4
Q ss_pred ecCC--cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR--QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~--~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3544 56888899999999999999999999999999998764
No 429
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00096 Score=56.98 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=36.4
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 9 RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556788889999999999999999999999999998654
No 430
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.91 E-value=0.00095 Score=58.42 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556788899999999999999999999999999998865
No 431
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0025 Score=56.08 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=34.8
Q ss_pred ecCCcc--cccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQE--MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~--~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|.+.. ++++.+....++--|+++|++|||||||+|-+.+--
T Consensus 12 ~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 12 SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred ecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 354444 777888899999999999999999999999887643
No 432
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.91 E-value=0.00085 Score=62.34 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=37.5
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.||...++++.++...++-.++|+|+.|+|||||++.+.+--
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467667888899999999999999999999999999998764
No 433
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.90 E-value=0.00096 Score=57.10 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=36.4
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556788889999999999999999999999999998754
No 434
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.90 E-value=0.001 Score=57.96 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=36.6
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+....++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355566788899999999999999999999999999998764
No 435
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.00094 Score=59.64 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 11 RFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556888899999999999999999999999999998764
No 436
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.89 E-value=0.001 Score=59.70 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 12 KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456556888899999999999999999999999999998754
No 437
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00098 Score=59.87 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456566888899999999999999999999999999998764
No 438
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00094 Score=60.11 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=36.4
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+.
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45555688889999999999999999999999999999875
No 439
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.89 E-value=0.0011 Score=58.07 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=34.6
Q ss_pred CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 35 ~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 446788899999999999999999999999999998754
No 440
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.88 E-value=0.001 Score=58.03 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=36.5
Q ss_pred cCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 33 ~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55556888899999999999999999999999999998765
No 441
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.88 E-value=0.0011 Score=58.26 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=33.7
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 5788889999999999999999999999999998754
No 442
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.001 Score=59.81 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 13 YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 466667888999999999999999999999999999998764
No 443
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0011 Score=58.92 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=34.0
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5788899999999999999999999999999998764
No 444
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.0011 Score=59.76 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 16 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 16 FYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456567888899999999999999999999999999998764
No 445
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.87 E-value=0.00099 Score=61.91 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=38.0
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++++|+.|+|||||++.+.+..
T Consensus 12 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 12 KSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566667889999999999999999999999999999998754
No 446
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.87 E-value=0.0062 Score=59.51 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc------CCCC----CCC-----------CCCcceEEeeEEeecC-------------c
Q 040295 50 PGILIIGSSNVGKRTILSRLLS------VNFE----DAS-----------DSSSELLVNGWTINTK-------------Y 95 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~------~~~~----~~~-----------~~t~~~~~~~~~i~~~-------------~ 95 (289)
-.|+++|++||||||++.++.. .... +.+ ....+..++......+ .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999862 1110 111 1112222221110000 1
Q ss_pred ceEEEEEEEcCCchhhhc-ccc---cc--ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSI-RSL---PI--SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~-~~~---~~--~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..+++.|.||||...... +.. .+ ....+.++||.|.+-...-. .....+... .++--+|.||.|-..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~-~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS-VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc-cCCcEEEEECccCCC
Confidence 246789999999643321 111 11 22467899999987442221 122222221 124556789999864
No 447
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.86 E-value=0.0011 Score=59.79 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=36.6
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556888899999999999999999999999999998754
No 448
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.85 E-value=0.0011 Score=58.65 Aligned_cols=42 Identities=29% Similarity=0.273 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 16 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456667888999999999999999999999999999998754
No 449
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.85 E-value=0.0011 Score=59.15 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=36.7
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 10 AYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 355556888899999999999999999999999999998764
No 450
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0011 Score=60.42 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456566888899999999999999999999999999997654
No 451
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.001 Score=60.22 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=37.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 21 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 21 WYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 466667888899999999999999999999999999998754
No 452
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0011 Score=59.30 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 12 SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355566888899999999999999999999999999998754
No 453
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0011 Score=59.51 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=36.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+.
T Consensus 14 ~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 14 YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45555688889999999999999999999999999999875
No 454
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.84 E-value=0.0037 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-+++.|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3689999999999999999865
No 455
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.00099 Score=60.82 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=38.7
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred hhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4577778899999999999999999999999999999998764
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.84 E-value=0.0012 Score=58.06 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+....++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 355556888899999999999999999999999999998764
No 457
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0063 Score=58.04 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=95.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCC-------CcceEEeeEEeec----------Ccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA----------------SDS-------SSELLVNGWTINT----------KYY 96 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~----------------~~~-------t~~~~~~~~~i~~----------~~~ 96 (289)
.+++++|...+|||||+--|..++.... ... .++++.....+++ +..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 6899999999999999988876554321 111 1121111111111 111
Q ss_pred eEEEEEEEcCCchhhhccccccc--cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHH
Q 040295 97 TADVSLWMAHLHEEFSIRSLPIS--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEY 174 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~--~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~ 174 (289)
.--+.+.|.+|+.+|..-.-.-+ -..|.+++|++....-.+.. ++-+.-+...+. |++++.+|+|+.......
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL~i-PfFvlvtK~Dl~~~~~~~--- 322 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAALNI-PFFVLVTKMDLVDRQGLK--- 322 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHhCC-CeEEEEEeeccccchhHH---
Confidence 22378899999988854322211 23688888888765422211 111223334333 778889999998654322
Q ss_pred HHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHH
Q 040295 175 RRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERL 254 (289)
Q Consensus 175 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l 254 (289)
+.++.+....+ +.|...-+- .-...++-...+++.|..+=.|+|-+|..+| +|++-+
T Consensus 323 -~tv~~l~nll~-----~~Gc~kvp~-----~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG------------egl~ll 379 (591)
T KOG1143|consen 323 -KTVKDLSNLLA-----KAGCTKVPK-----RVTTKDDAVKAAQELCSGNIVPIFAVSSVSG------------EGLRLL 379 (591)
T ss_pred -HHHHHHHHHHh-----hcCccccce-----EeechHHHHHHHHHhccCCceeEEEEeecCc------------cchhHH
Confidence 22211111111 112111110 0001122233356666655568999999999 888755
Q ss_pred HHHH
Q 040295 255 YGAL 258 (289)
Q Consensus 255 ~~~L 258 (289)
...|
T Consensus 380 ~~fL 383 (591)
T KOG1143|consen 380 RTFL 383 (591)
T ss_pred HHHH
Confidence 4443
No 458
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.83 E-value=0.00084 Score=54.25 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=28.6
Q ss_pred cccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 40 ~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 3456677788899999999999999999887665
No 459
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.82 E-value=0.0012 Score=59.21 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 10 FYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456556788899999999999999999999999999998765
No 460
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.81 E-value=0.0011 Score=57.12 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.2
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHh
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
..++++.+++..++-.++|+|++|+|||||++.++
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35667788999999999999999999999999885
No 461
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.81 E-value=0.0012 Score=59.44 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=36.3
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 12 SYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556788889999999999999999999999999998764
No 462
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.81 E-value=0.0012 Score=59.06 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=36.6
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 455556888899999999999999999999999999998763
No 463
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.80 E-value=0.0013 Score=54.40 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=36.0
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+....+++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 9 TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345456788888999999999999999999999999998765
No 464
>PRK10908 cell division protein FtsE; Provisional
Probab=96.80 E-value=0.0014 Score=57.87 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 34 GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 34 g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4446788889999999999999999999999999998754
No 465
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0012 Score=60.21 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=37.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 22 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 22 SYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456667888999999999999999999999999999998764
No 466
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0012 Score=59.49 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 14 RFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 456667888999999999999999999999999999998764
No 467
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0013 Score=59.61 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 22 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 22 YYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456556888899999999999999999999999999998764
No 468
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.79 E-value=0.0014 Score=57.05 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=36.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+.
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555688889999999999999999999999999999876
No 469
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.79 E-value=0.0013 Score=57.64 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=33.8
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4788899999999999999999999999999998764
No 470
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0011 Score=60.40 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=36.5
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHh
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
+.|+...++++.+.+.+.+--++++|+|||||||+++.+.
T Consensus 9 k~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN 48 (309)
T COG1125 9 KRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN 48 (309)
T ss_pred hhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh
Confidence 5688889999999999999999999999999999988764
No 471
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0014 Score=55.70 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=35.5
Q ss_pred cCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 33 ~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 10 YGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44445788899999999999999999999999999997754
No 472
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0014 Score=58.92 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=36.4
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+-.
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 12 FYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355556888899999999999999999999999999998753
No 473
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0014 Score=58.97 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 466667888899999999999999999999999999998764
No 474
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0013 Score=60.03 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 28 FYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456666888999999999999999999999999999998754
No 475
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0013 Score=59.55 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=37.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466667888899999999999999999999999999998764
No 476
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.76 E-value=0.0013 Score=61.05 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=40.5
Q ss_pred heecC-CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 30 VLIFG-RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 30 ~~~~g-~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
...|| ...++++.++...++--++++|+.|+|||||++.+.+.-.
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 35788 6899999999999999999999999999999999987654
No 477
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.76 E-value=0.0014 Score=58.46 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=36.6
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556788899999999999999999999999999998764
No 478
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0013 Score=59.77 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 20 RVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 455557888899999999999999999999999999998754
No 479
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0015 Score=58.75 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=36.4
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+-.
T Consensus 12 ~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455556788899999999999999999999999999998753
No 480
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.75 E-value=0.0015 Score=57.08 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=34.2
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46788889999999999999999999999999998754
No 481
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.74 E-value=0.0014 Score=59.23 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=36.4
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 15 LYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345456788889999999999999999999999999998764
No 482
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.74 E-value=0.0015 Score=59.52 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=37.0
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 30 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 30 YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456667888899999999999999999999999999998753
No 483
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0015 Score=58.42 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=36.3
Q ss_pred ecCC-cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR-QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~-~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 9 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 9 RYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3554 46788899999999999999999999999999998754
No 484
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.74 E-value=0.0014 Score=58.74 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=36.7
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+....++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 11 FYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 466567888899999999999999999999999999998753
No 485
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.73 E-value=0.081 Score=51.57 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=81.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC----------------C-----CCCCcceEEee---EEee-cCcceEEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED----------------A-----SDSSSELLVNG---WTIN-TKYYTADVSLWM 104 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~----------------~-----~~~t~~~~~~~---~~i~-~~~~~~~l~I~D 104 (289)
+=|.|+||--+||||||+||...-..+ + ...|....|.+ ..+. .++-.+++++.|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 569999999999999999998421111 1 11222222311 1222 345678889999
Q ss_pred cCCc-------------hhh-hccc---------------ccccc--CccEEEEEEeCC----CHhhHHHHH-HHHHHhh
Q 040295 105 AHLH-------------EEF-SIRS---------------LPISD--QLTALVMVFNLN----DLSTLDALK-HWVPSID 148 (289)
Q Consensus 105 t~G~-------------e~~-~~~~---------------~~~~~--~ad~vIlV~Dv~----~~~S~~~l~-~~~~~i~ 148 (289)
+.|- ++. ..-| +..++ ..=|+|+.-|-+ .++.+..+. +-+..++
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 7751 111 0001 00111 122777777755 456665554 5667777
Q ss_pred hcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeE
Q 040295 149 LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEY 228 (289)
Q Consensus 149 ~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (289)
..+. |++++.|=.+=.. +..+++ +.++..+|+++.
T Consensus 178 ~igK-PFvillNs~~P~s------~et~~L--------------------------------------~~eL~ekY~vpV 212 (492)
T PF09547_consen 178 EIGK-PFVILLNSTKPYS------EETQEL--------------------------------------AEELEEKYDVPV 212 (492)
T ss_pred HhCC-CEEEEEeCCCCCC------HHHHHH--------------------------------------HHHHHHHhCCcE
Confidence 7666 4555666544311 334444 889999999998
Q ss_pred EEeecCC
Q 040295 229 IEACASN 235 (289)
Q Consensus 229 ie~Sa~~ 235 (289)
+.+++..
T Consensus 213 lpvnc~~ 219 (492)
T PF09547_consen 213 LPVNCEQ 219 (492)
T ss_pred EEeehHH
Confidence 8877654
No 486
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.00085 Score=62.30 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=97.9
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCcceE--EeeEEe----------------------------
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVN---FEDASDSSSELL--VNGWTI---------------------------- 91 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~---~~~~~~~t~~~~--~~~~~i---------------------------- 91 (289)
.-+..+.|.-+|.-.-||||+++.+.+-. |-.+...++... |.+-.+
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 34556889999999999999999887632 111111111111 111010
Q ss_pred -ecCc---c-eEEEEEEEcCCchhhhccccccccCccEEEEEEeCC----CHhhHHHHHHHHHHhhhcCCCeEEEEeeCC
Q 040295 92 -NTKY---Y-TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLN----DLSTLDALKHWVPSIDLQKFEILLCIGNKV 162 (289)
Q Consensus 92 -~~~~---~-~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~----~~~S~~~l~~~~~~i~~~~~~~iivvgnK~ 162 (289)
..-. + ...+.+.|.||++-.-+-+-.-..-.|++++....+ +|++-+.+.. +....-+.+|++-||+
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa----veiM~LkhiiilQNKi 189 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA----VEIMKLKHIIILQNKI 189 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH----HHHhhhceEEEEechh
Confidence 0000 0 134678899999866432211222247777777655 5666665542 2222334588899999
Q ss_pred CCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCccc
Q 040295 163 DLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFD 239 (289)
Q Consensus 163 Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~ 239 (289)
||...... . +..++++.|.+.. +.+++.+||.-+
T Consensus 190 Dli~e~~A-------~---------------------------------eq~e~I~kFi~~t~ae~aPiiPisAQlk--- 226 (466)
T KOG0466|consen 190 DLIKESQA-------L---------------------------------EQHEQIQKFIQGTVAEGAPIIPISAQLK--- 226 (466)
T ss_pred hhhhHHHH-------H---------------------------------HHHHHHHHHHhccccCCCceeeehhhhc---
Confidence 99753211 1 2223366666544 467999999999
Q ss_pred ccccCCCCchhHHHHHHHHHHhcc
Q 040295 240 KCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 240 ~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+||+-+.+++++.+-
T Consensus 227 ---------yNId~v~eyivkkIP 241 (466)
T KOG0466|consen 227 ---------YNIDVVCEYIVKKIP 241 (466)
T ss_pred ---------cChHHHHHHHHhcCC
Confidence 999999999998773
No 487
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0014 Score=59.50 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=37.0
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 16 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 16 GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 455567888999999999999999999999999999998764
No 488
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0015 Score=58.75 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=36.7
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 13 HFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 455556788899999999999999999999999999998764
No 489
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.72 E-value=0.0015 Score=57.38 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=33.8
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4788889999999999999999999999999998764
No 490
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.72 E-value=0.015 Score=55.77 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=71.3
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------CCcceEEeeEEeec---------------
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD----------------SSSELLVNGWTINT--------------- 93 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~----------------~t~~~~~~~~~i~~--------------- 93 (289)
....-+.|.+.|.-+.|||||+-.|..+...+... .+....+.-.-+..
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34555789999999999999998888765443211 11111111111111
Q ss_pred ----CcceEEEEEEEcCCchhhhc--cccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 94 ----KYYTADVSLWMAHLHEEFSI--RSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 94 ----~~~~~~l~I~Dt~G~e~~~~--~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
+...-.+.+.||.|+|+|-. +.-..-++.|-.++|...++..+- +-.-..-+..--.-|+|+|.+|+|+.++
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tkEHLgi~~a~~lPviVvvTK~D~~~d 270 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTKEHLGIALAMELPVIVVVTKIDMVPD 270 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhhHhhhhhhhhcCCEEEEEEecccCcH
Confidence 01113468899999998843 112234568999999998876332 1111111111112289999999999875
Q ss_pred C
Q 040295 168 H 168 (289)
Q Consensus 168 ~ 168 (289)
.
T Consensus 271 d 271 (527)
T COG5258 271 D 271 (527)
T ss_pred H
Confidence 3
No 491
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0015 Score=58.18 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.++...++-.++|+|++|+|||||++.+.+..
T Consensus 14 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 14 HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred eeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 355556888899999999999999999999999999998764
No 492
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0015 Score=58.92 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 466667888899999999999999999999999999998753
No 493
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.71 E-value=0.0016 Score=58.18 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=36.9
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 11 SFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455556888899999999999999999999999999998764
No 494
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.0016 Score=59.25 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=36.5
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|+...++++.+++..++-.++|+|++|+|||||++.+.+-
T Consensus 19 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 19 YYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45666788889999999999999999999999999999864
No 495
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.70 E-value=0.01 Score=49.47 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=34.4
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVD 163 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~D 163 (289)
.+++.|.||+|..... ...+..+|-+|+|...+-.+.+.-++- ..+.. -=+++.||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~----~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI----ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh----cCEEEEeCCC
Confidence 4678899999865332 246778998888886653333333221 11111 1245789987
No 496
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.70 E-value=0.0016 Score=59.66 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=36.8
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 29 ~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355556888899999999999999999999999999998653
No 497
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.70 E-value=0.0016 Score=58.95 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=36.5
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..++...++-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 13 SFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556788899999999999999999999999999998754
No 498
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0015 Score=62.18 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=37.6
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
.||...++++.++...++-.++|+|++|||||||++.+.+-..
T Consensus 15 ~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 4666677888999999999999999999999999999987653
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.01 Score=57.03 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.8
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.......+--++++|++||||||++.+|...
T Consensus 130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 130 EDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555667999999999999999998753
No 500
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.69 E-value=0.0016 Score=58.96 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=37.2
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+...+++..+++..++-.++|+|++|+|||||++.+.+..
T Consensus 16 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 16 YYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456667888899999999999999999999999999998754
Done!