Query 040295
Match_columns 289
No_of_seqs 133 out of 1788
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.9E-36 2E-40 263.8 14.1 167 45-265 9-177 (216)
2 3tkl_A RAS-related protein RAB 100.0 5.7E-30 1.9E-34 217.3 19.3 170 44-267 11-182 (196)
3 2fu5_C RAS-related protein RAB 100.0 1.7E-30 6E-35 218.5 14.3 167 47-267 6-174 (183)
4 3tw8_B RAS-related protein RAB 100.0 1.1E-29 3.8E-34 211.9 18.5 167 46-266 6-173 (181)
5 1r2q_A RAS-related protein RAB 100.0 1.4E-29 4.9E-34 208.8 18.7 163 48-264 5-169 (170)
6 1z08_A RAS-related protein RAB 100.0 1.7E-29 5.9E-34 209.0 18.2 164 47-264 4-169 (170)
7 3t5g_A GTP-binding protein RHE 100.0 3.5E-29 1.2E-33 210.1 20.2 164 48-266 5-171 (181)
8 2ew1_A RAS-related protein RAB 100.0 1.1E-29 3.8E-34 219.8 17.2 168 45-266 22-191 (201)
9 1z0j_A RAB-22, RAS-related pro 100.0 4.2E-29 1.4E-33 206.3 19.8 162 48-263 5-168 (170)
10 3q3j_B RHO-related GTP-binding 100.0 2.6E-29 8.9E-34 218.9 19.3 182 42-266 20-205 (214)
11 2bme_A RAB4A, RAS-related prot 100.0 1.6E-29 5.5E-34 212.8 17.2 168 45-266 6-175 (186)
12 2efe_B Small GTP-binding prote 100.0 5.9E-29 2E-33 208.1 20.5 166 46-265 9-176 (181)
13 2hxs_A RAB-26, RAS-related pro 100.0 8.3E-30 2.9E-34 212.7 15.2 165 47-265 4-174 (178)
14 3c5c_A RAS-like protein 12; GD 100.0 2.5E-29 8.6E-34 214.0 18.0 166 42-263 14-185 (187)
15 2a5j_A RAS-related protein RAB 100.0 1.8E-29 6.2E-34 214.8 17.1 170 43-266 15-186 (191)
16 1z0f_A RAB14, member RAS oncog 100.0 2.8E-29 9.7E-34 209.0 17.8 166 45-264 11-178 (179)
17 2hup_A RAS-related protein RAB 100.0 1.1E-29 3.7E-34 218.8 15.6 169 43-265 23-194 (201)
18 1ek0_A Protein (GTP-binding pr 100.0 4.8E-29 1.6E-33 205.6 18.7 164 49-263 3-168 (170)
19 2bcg_Y Protein YP2, GTP-bindin 100.0 6.5E-29 2.2E-33 213.5 19.9 167 46-266 5-173 (206)
20 2gf9_A RAS-related protein RAB 100.0 4.5E-29 1.5E-33 211.7 18.3 167 45-265 18-186 (189)
21 1zbd_A Rabphilin-3A; G protein 100.0 5E-29 1.7E-33 213.4 18.8 167 46-266 5-173 (203)
22 2oil_A CATX-8, RAS-related pro 100.0 2.8E-29 9.7E-34 213.4 17.0 171 42-266 18-190 (193)
23 1g16_A RAS-related protein SEC 100.0 5.1E-29 1.7E-33 205.8 17.9 163 48-265 2-166 (170)
24 3kkq_A RAS-related protein M-R 100.0 5.2E-29 1.8E-33 209.4 18.0 164 45-263 14-181 (183)
25 2y8e_A RAB-protein 6, GH09086P 100.0 5.4E-29 1.8E-33 207.3 17.5 164 47-264 12-177 (179)
26 3clv_A RAB5 protein, putative; 100.0 1.3E-28 4.6E-33 208.3 20.2 164 46-264 4-204 (208)
27 3dz8_A RAS-related protein RAB 100.0 4.4E-30 1.5E-34 218.6 11.0 171 42-266 16-188 (191)
28 3reg_A RHO-like small GTPase; 100.0 7.8E-29 2.7E-33 211.1 18.8 168 46-266 20-190 (194)
29 2fg5_A RAB-22B, RAS-related pr 100.0 7.9E-29 2.7E-33 211.2 18.7 167 45-265 19-187 (192)
30 1x3s_A RAS-related protein RAB 100.0 8.9E-29 3.1E-33 209.4 18.5 169 45-268 11-182 (195)
31 2g6b_A RAS-related protein RAB 100.0 1.7E-28 5.7E-33 205.2 19.7 166 46-265 7-175 (180)
32 1z2a_A RAS-related protein RAB 100.0 4.1E-29 1.4E-33 206.0 15.8 163 48-264 4-167 (168)
33 3cpj_B GTP-binding protein YPT 100.0 7.6E-29 2.6E-33 216.6 17.6 171 46-270 10-182 (223)
34 3oes_A GTPase rhebl1; small GT 100.0 9.6E-29 3.3E-33 212.2 17.9 167 45-266 20-189 (201)
35 3cbq_A GTP-binding protein REM 100.0 3.9E-29 1.3E-33 214.9 15.3 169 43-265 17-189 (195)
36 1m7b_A RND3/RHOE small GTP-bin 100.0 1.8E-28 6E-33 207.5 19.1 175 47-264 5-183 (184)
37 2o52_A RAS-related protein RAB 100.0 4.8E-29 1.6E-33 214.4 15.4 167 46-266 22-190 (200)
38 3q85_A GTP-binding protein REM 100.0 6.9E-29 2.4E-33 205.5 15.8 162 49-264 2-167 (169)
39 2fn4_A P23, RAS-related protei 100.0 1.1E-28 3.8E-33 205.7 16.9 165 46-265 6-173 (181)
40 2atx_A Small GTP binding prote 100.0 2.1E-28 7.1E-33 208.2 18.7 175 47-264 16-193 (194)
41 3ihw_A Centg3; RAS, centaurin, 100.0 1.5E-28 5.2E-33 209.0 17.9 163 44-265 15-181 (184)
42 2nzj_A GTP-binding protein REM 100.0 1.5E-28 5.3E-33 204.1 17.1 163 48-265 3-170 (175)
43 2j0v_A RAC-like GTP-binding pr 100.0 7.4E-29 2.5E-33 214.1 15.6 177 46-269 6-185 (212)
44 3q72_A GTP-binding protein RAD 100.0 2.4E-28 8.1E-33 201.7 18.0 160 49-264 2-164 (166)
45 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.6E-28 1.2E-32 202.6 19.0 163 48-265 6-175 (177)
46 2iwr_A Centaurin gamma 1; ANK 100.0 2.5E-28 8.7E-33 204.3 17.8 161 47-266 5-171 (178)
47 3bc1_A RAS-related protein RAB 100.0 2.2E-28 7.4E-33 206.0 17.4 167 46-266 8-187 (195)
48 2p5s_A RAS and EF-hand domain 100.0 9.8E-29 3.3E-33 211.8 15.1 174 43-264 22-197 (199)
49 2il1_A RAB12; G-protein, GDP, 100.0 1E-28 3.4E-33 210.9 15.0 167 45-265 22-191 (192)
50 1c1y_A RAS-related protein RAP 100.0 2.6E-28 9E-33 200.9 16.9 160 49-263 3-166 (167)
51 1gwn_A RHO-related GTP-binding 100.0 3.9E-28 1.3E-32 210.6 18.7 175 46-263 25-203 (205)
52 2g3y_A GTP-binding protein GEM 100.0 2.3E-28 7.9E-33 214.2 17.4 166 45-265 33-204 (211)
53 2q3h_A RAS homolog gene family 100.0 2.7E-28 9.3E-33 208.5 17.4 180 43-265 14-196 (201)
54 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.2E-28 7.7E-33 205.1 16.1 175 49-266 5-182 (186)
55 2f7s_A C25KG, RAS-related prot 100.0 9.7E-29 3.3E-33 214.1 14.3 172 43-268 19-203 (217)
56 1ky3_A GTP-binding protein YPT 100.0 8.3E-29 2.9E-33 206.7 13.3 167 46-265 5-179 (182)
57 4bas_A ADP-ribosylation factor 100.0 5.9E-28 2E-32 205.3 18.7 170 42-265 10-190 (199)
58 2bov_A RAla, RAS-related prote 100.0 3.3E-28 1.1E-32 207.9 16.5 167 45-266 10-179 (206)
59 1kao_A RAP2A; GTP-binding prot 100.0 4.1E-28 1.4E-32 199.1 16.3 160 48-262 2-164 (167)
60 1vg8_A RAS-related protein RAB 100.0 1.3E-27 4.5E-32 204.6 19.8 166 46-266 5-177 (207)
61 3cph_A RAS-related protein SEC 100.0 7.9E-28 2.7E-32 206.9 18.4 166 46-266 17-184 (213)
62 1u8z_A RAS-related protein RAL 100.0 4.1E-28 1.4E-32 199.3 15.9 160 49-263 4-166 (168)
63 2yc2_C IFT27, small RAB-relate 100.0 1.3E-28 4.4E-33 210.4 13.3 166 47-265 18-193 (208)
64 3bwd_D RAC-like GTP-binding pr 100.0 1.6E-28 5.3E-33 205.7 13.4 173 47-264 6-181 (182)
65 1z06_A RAS-related protein RAB 100.0 8.2E-28 2.8E-32 203.9 17.0 167 46-263 17-187 (189)
66 2fv8_A H6, RHO-related GTP-bin 100.0 1.1E-27 3.8E-32 206.7 18.0 182 41-265 17-201 (207)
67 3gj0_A GTP-binding nuclear pro 100.0 1.3E-28 4.4E-33 214.4 11.6 170 44-269 10-180 (221)
68 2gco_A H9, RHO-related GTP-bin 100.0 2.1E-27 7.1E-32 204.1 18.7 176 45-263 21-199 (201)
69 2a9k_A RAS-related protein RAL 100.0 9.4E-28 3.2E-32 201.1 16.1 165 46-265 15-182 (187)
70 2j1l_A RHO-related GTP-binding 100.0 9E-28 3.1E-32 208.7 16.4 177 46-265 31-210 (214)
71 3l0i_B RAS-related protein RAB 100.0 1.7E-29 5.7E-34 216.6 5.0 169 43-265 27-197 (199)
72 4dsu_A GTPase KRAS, isoform 2B 100.0 1E-27 3.4E-32 201.6 15.6 163 49-267 4-169 (189)
73 2atv_A RERG, RAS-like estrogen 100.0 7E-28 2.4E-32 205.7 14.3 164 46-265 25-192 (196)
74 3t1o_A Gliding protein MGLA; G 100.0 1.3E-28 4.6E-33 208.1 9.7 164 46-266 11-194 (198)
75 2erx_A GTP-binding protein DI- 100.0 1.8E-27 6E-32 196.6 16.2 161 49-264 3-167 (172)
76 4gzl_A RAS-related C3 botulinu 100.0 2.4E-27 8.2E-32 204.6 17.0 174 47-263 28-204 (204)
77 4djt_A GTP-binding nuclear pro 100.0 1.3E-27 4.3E-32 207.1 14.8 168 46-267 8-178 (218)
78 2gf0_A GTP-binding protein DI- 99.9 2.9E-27 9.8E-32 201.0 16.2 163 47-265 6-172 (199)
79 1upt_A ARL1, ADP-ribosylation 99.9 5.9E-27 2E-31 193.9 17.4 162 47-264 5-169 (171)
80 2ce2_X GTPase HRAS; signaling 99.9 6.8E-27 2.3E-31 191.3 17.5 159 49-263 3-164 (166)
81 2cjw_A GTP-binding protein GEM 99.9 7.6E-27 2.6E-31 200.0 16.9 161 49-264 6-172 (192)
82 1r8s_A ADP-ribosylation factor 99.9 3.9E-27 1.3E-31 193.9 14.3 159 50-264 1-162 (164)
83 3con_A GTPase NRAS; structural 99.9 1.5E-26 5.1E-31 195.7 18.3 163 47-265 19-184 (190)
84 1ksh_A ARF-like protein 2; sma 99.9 1.4E-26 4.7E-31 195.3 17.3 163 47-265 16-181 (186)
85 1f6b_A SAR1; gtpases, N-termin 99.9 7.9E-27 2.7E-31 200.7 16.0 114 48-166 24-140 (198)
86 1zd9_A ADP-ribosylation factor 99.9 1.1E-26 3.9E-31 197.2 15.9 164 47-265 20-186 (188)
87 1fzq_A ADP-ribosylation factor 99.9 5.4E-27 1.8E-31 198.5 13.3 162 47-264 14-178 (181)
88 2zej_A Dardarin, leucine-rich 99.9 3.9E-27 1.3E-31 199.6 12.3 166 49-265 2-179 (184)
89 1zj6_A ADP-ribosylation factor 99.9 8.2E-27 2.8E-31 197.4 14.3 158 48-265 15-179 (187)
90 2h17_A ADP-ribosylation factor 99.9 8.2E-27 2.8E-31 196.7 14.1 162 43-261 15-180 (181)
91 1m2o_B GTP-binding protein SAR 99.9 4.7E-26 1.6E-30 194.4 18.8 165 48-261 22-189 (190)
92 2h57_A ADP-ribosylation factor 99.9 2.9E-26 9.9E-31 194.5 16.2 159 45-263 17-186 (190)
93 2b6h_A ADP-ribosylation factor 99.9 2.3E-26 7.8E-31 196.7 14.0 163 46-264 26-191 (192)
94 2f9l_A RAB11B, member RAS onco 99.9 1.3E-25 4.3E-30 192.6 18.1 165 47-265 3-169 (199)
95 2x77_A ADP-ribosylation factor 99.9 2.7E-26 9.2E-31 194.3 13.0 162 48-265 21-185 (189)
96 3llu_A RAS-related GTP-binding 99.9 9.7E-26 3.3E-30 192.9 15.0 170 43-263 14-196 (196)
97 1moz_A ARL1, ADP-ribosylation 99.9 5.6E-26 1.9E-30 190.6 12.3 160 47-263 16-179 (183)
98 2wkq_A NPH1-1, RAS-related C3 99.9 3.7E-25 1.3E-29 202.7 18.5 176 46-264 152-330 (332)
99 3th5_A RAS-related C3 botulinu 99.9 7.7E-28 2.6E-32 206.7 0.0 169 47-262 28-203 (204)
100 1oix_A RAS-related protein RAB 99.9 7.9E-25 2.7E-29 187.1 18.2 164 45-262 25-190 (191)
101 3c5h_A Glucocorticoid receptor 99.9 1.8E-25 6.2E-30 200.5 10.5 164 43-262 13-253 (255)
102 3r7w_B Gtpase2, GTP-binding pr 99.9 3E-25 1E-29 206.6 11.3 164 51-267 1-177 (331)
103 2wji_A Ferrous iron transport 99.9 2.2E-24 7.6E-29 179.5 13.9 153 49-262 3-163 (165)
104 2lkc_A Translation initiation 99.9 1.7E-24 5.8E-29 180.4 12.3 161 47-264 6-171 (178)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 7.8E-24 2.7E-28 195.1 17.7 167 48-266 2-183 (307)
106 2fh5_B SR-beta, signal recogni 99.9 1.5E-23 5E-28 181.0 17.6 195 48-261 6-213 (214)
107 3o47_A ADP-ribosylation factor 99.9 3.4E-24 1.2E-28 199.5 11.6 162 47-264 163-327 (329)
108 3lvq_E ARF-GAP with SH3 domain 99.9 9.4E-23 3.2E-27 198.8 19.7 164 45-264 318-484 (497)
109 2qu8_A Putative nucleolar GTP- 99.9 4.7E-23 1.6E-27 180.6 15.3 165 47-265 27-206 (228)
110 2cxx_A Probable GTP-binding pr 99.9 1.1E-23 3.9E-28 177.2 10.4 154 50-266 2-186 (190)
111 2wjg_A FEOB, ferrous iron tran 99.9 2.9E-23 9.8E-28 174.9 12.4 157 48-265 6-170 (188)
112 1svi_A GTP-binding protein YSX 99.9 3.3E-23 1.1E-27 175.5 12.3 158 46-262 20-193 (195)
113 2dyk_A GTP-binding protein; GT 99.9 2.4E-23 8.1E-28 170.4 10.0 150 50-262 2-160 (161)
114 2gj8_A MNME, tRNA modification 99.9 9.7E-24 3.3E-28 177.4 5.6 151 48-262 3-164 (172)
115 3pqc_A Probable GTP-binding pr 99.9 4E-22 1.4E-26 168.0 15.2 159 45-263 19-193 (195)
116 3dpu_A RAB family protein; roc 99.9 7.6E-23 2.6E-27 201.7 9.1 164 45-265 37-209 (535)
117 3iev_A GTP-binding protein ERA 99.9 3.8E-21 1.3E-25 177.3 15.3 166 46-266 7-184 (308)
118 3a1s_A Iron(II) transport prot 99.9 1.9E-21 6.3E-26 175.2 12.8 154 49-263 5-166 (258)
119 3b1v_A Ferrous iron uptake tra 99.9 1.5E-21 5E-26 177.5 11.8 152 49-262 3-162 (272)
120 4dhe_A Probable GTP-binding pr 99.8 2.2E-21 7.7E-26 168.0 10.6 166 45-265 25-212 (223)
121 3i8s_A Ferrous iron transport 99.8 3.2E-21 1.1E-25 175.0 11.5 156 48-264 2-169 (274)
122 3iby_A Ferrous iron transport 99.8 2.4E-21 8.1E-26 174.4 10.1 151 50-261 2-164 (256)
123 1nrj_B SR-beta, signal recogni 99.8 7.7E-22 2.6E-26 170.6 6.4 146 46-236 9-168 (218)
124 3k53_A Ferrous iron transport 99.8 1.2E-20 4.1E-25 170.3 13.3 156 48-263 2-165 (271)
125 2hjg_A GTP-binding protein ENG 99.8 1.4E-20 4.8E-25 181.2 9.4 162 48-263 174-348 (436)
126 3gee_A MNME, tRNA modification 99.8 1.3E-19 4.3E-24 176.8 12.6 157 48-263 232-397 (476)
127 1wf3_A GTP-binding protein; GT 99.8 4.8E-19 1.6E-23 163.0 15.6 154 50-265 8-174 (301)
128 2e87_A Hypothetical protein PH 99.8 1.1E-18 3.6E-23 163.9 16.8 158 47-264 165-336 (357)
129 3sjy_A Translation initiation 99.8 1.5E-18 5.1E-23 165.4 17.7 164 46-265 5-193 (403)
130 1mky_A Probable GTP-binding pr 99.8 6.6E-19 2.3E-23 169.6 13.1 150 50-263 2-165 (439)
131 1s0u_A EIF-2-gamma, translatio 99.8 5E-18 1.7E-22 162.0 17.8 162 47-264 6-198 (408)
132 4dcu_A GTP-binding protein ENG 99.8 2.7E-19 9.3E-24 173.1 9.1 163 46-262 192-367 (456)
133 3qq5_A Small GTP-binding prote 99.8 1.6E-19 5.6E-24 173.6 7.0 159 46-265 31-197 (423)
134 2ged_A SR-beta, signal recogni 99.8 5E-19 1.7E-23 149.6 8.3 113 47-168 46-172 (193)
135 1lnz_A SPO0B-associated GTP-bi 99.8 7.3E-19 2.5E-23 164.7 10.0 155 50-265 159-331 (342)
136 2hjg_A GTP-binding protein ENG 99.8 3.2E-19 1.1E-23 171.7 7.4 151 50-264 4-165 (436)
137 1ega_A Protein (GTP-binding pr 99.8 1.1E-17 3.8E-22 153.6 15.9 156 50-265 9-176 (301)
138 3lxx_A GTPase IMAP family memb 99.8 5.2E-18 1.8E-22 149.7 12.2 175 45-264 25-214 (239)
139 2xtp_A GTPase IMAP family memb 99.8 8.9E-18 3.1E-22 149.8 13.7 169 46-264 19-208 (260)
140 3t5d_A Septin-7; GTP-binding p 99.7 2.1E-18 7E-23 156.0 9.1 161 48-262 7-202 (274)
141 1kk1_A EIF2gamma; initiation o 99.7 1.4E-17 4.7E-22 159.0 15.0 162 48-265 9-201 (410)
142 3ohm_A Guanine nucleotide-bind 99.7 1.1E-17 3.8E-22 155.7 13.4 131 97-265 166-319 (327)
143 4fid_A G protein alpha subunit 99.7 1.8E-17 6E-22 155.1 14.7 134 97-271 160-333 (340)
144 1xzp_A Probable tRNA modificat 99.7 3E-18 1E-22 167.3 9.6 152 49-263 243-404 (482)
145 1wb1_A Translation elongation 99.7 7.6E-18 2.6E-22 164.4 12.1 155 47-262 17-187 (482)
146 2qtf_A Protein HFLX, GTP-bindi 99.7 3E-17 1E-21 154.9 15.6 158 49-264 178-354 (364)
147 1mky_A Probable GTP-binding pr 99.7 1E-17 3.5E-22 161.3 12.3 161 48-262 179-353 (439)
148 3geh_A MNME, tRNA modification 99.7 1.9E-18 6.6E-23 167.8 7.2 154 48-265 223-385 (462)
149 2qag_A Septin-2, protein NEDD5 99.7 5.6E-19 1.9E-23 166.5 3.3 161 47-262 35-231 (361)
150 1pui_A ENGB, probable GTP-bind 99.7 7.3E-18 2.5E-22 144.5 9.5 161 44-263 21-198 (210)
151 3cb4_D GTP-binding protein LEP 99.7 2.6E-17 9E-22 164.4 14.5 160 48-265 3-183 (599)
152 3j2k_7 ERF3, eukaryotic polype 99.7 5.6E-17 1.9E-21 156.5 16.3 160 47-256 15-217 (439)
153 2ywe_A GTP-binding protein LEP 99.7 4.5E-17 1.5E-21 162.6 15.2 160 48-265 5-185 (600)
154 1g7s_A Translation initiation 99.7 5.7E-17 1.9E-21 161.9 15.9 114 48-166 4-136 (594)
155 2c78_A Elongation factor TU-A; 99.7 9.8E-18 3.4E-22 159.8 9.0 162 48-263 10-211 (405)
156 1d2e_A Elongation factor TU (E 99.7 2.1E-17 7.2E-22 157.3 10.9 171 49-264 3-195 (397)
157 3izy_P Translation initiation 99.7 1.2E-18 4.2E-23 171.9 2.1 116 48-166 3-118 (537)
158 3p26_A Elongation factor 1 alp 99.7 2.7E-17 9.3E-22 160.3 11.3 117 48-166 32-185 (483)
159 1zun_B Sulfate adenylate trans 99.7 2.1E-17 7.3E-22 158.9 10.3 147 49-236 24-208 (434)
160 4dcu_A GTP-binding protein ENG 99.7 6.6E-18 2.3E-22 163.4 6.5 153 49-263 23-184 (456)
161 3lxw_A GTPase IMAP family memb 99.7 9.1E-17 3.1E-21 143.3 13.0 173 47-264 19-208 (247)
162 1jny_A EF-1-alpha, elongation 99.7 2E-17 6.7E-22 159.3 9.1 148 48-236 5-197 (435)
163 3izq_1 HBS1P, elongation facto 99.7 1.4E-16 4.9E-21 159.6 15.6 118 47-166 165-319 (611)
164 3tr5_A RF-3, peptide chain rel 99.7 9.1E-17 3.1E-21 158.4 9.9 114 47-166 11-148 (528)
165 1zo1_I IF2, translation initia 99.7 1E-17 3.5E-22 164.1 2.5 112 48-166 3-117 (501)
166 2elf_A Protein translation elo 99.7 2.2E-16 7.6E-21 149.2 10.9 148 51-263 23-179 (370)
167 1cip_A Protein (guanine nucleo 99.7 2.8E-16 9.7E-21 147.7 11.1 143 79-264 178-344 (353)
168 1u0l_A Probable GTPase ENGC; p 99.7 9.8E-17 3.3E-21 147.4 7.7 136 64-262 32-171 (301)
169 2aka_B Dynamin-1; fusion prote 99.7 8.9E-17 3E-21 145.5 7.0 117 48-166 25-206 (299)
170 1f60_A Elongation factor EEF1A 99.6 1E-16 3.6E-21 155.4 6.8 146 49-236 7-196 (458)
171 2qag_C Septin-7; cell cycle, c 99.6 1.1E-15 3.7E-20 146.7 13.3 160 49-262 31-225 (418)
172 1r5b_A Eukaryotic peptide chai 99.6 3.4E-16 1.2E-20 152.1 8.7 114 48-165 42-194 (467)
173 2qnr_A Septin-2, protein NEDD5 99.6 7.9E-17 2.7E-21 148.1 3.9 173 32-265 7-215 (301)
174 3avx_A Elongation factor TS, e 99.6 9.4E-16 3.2E-20 161.3 12.0 172 47-264 294-486 (1289)
175 3mca_A HBS1, elongation factor 99.6 1.5E-16 5.1E-21 158.9 5.2 114 47-166 175-329 (592)
176 2xtz_A Guanine nucleotide-bind 99.6 3.9E-15 1.3E-19 140.0 13.6 70 96-165 181-263 (354)
177 1azs_C GS-alpha; complex (lyas 99.6 7.4E-15 2.5E-19 140.1 15.6 156 80-264 203-385 (402)
178 3def_A T7I23.11 protein; chlor 99.6 2.7E-15 9.3E-20 134.6 11.0 115 48-166 35-165 (262)
179 2dy1_A Elongation factor G; tr 99.6 5.1E-15 1.8E-19 149.6 13.9 119 45-165 5-139 (665)
180 1zcb_A G alpha I/13; GTP-bindi 99.6 3.5E-15 1.2E-19 140.7 11.6 157 66-264 166-353 (362)
181 2j69_A Bacterial dynamin-like 99.6 1.6E-14 5.5E-19 146.7 14.3 119 47-166 67-244 (695)
182 1h65_A Chloroplast outer envel 99.6 6.8E-15 2.3E-19 132.4 9.7 117 48-166 38-168 (270)
183 1udx_A The GTP-binding protein 99.6 4.5E-14 1.5E-18 135.4 15.7 166 41-266 149-327 (416)
184 1dar_A EF-G, elongation factor 99.5 1.9E-14 6.4E-19 146.1 12.4 116 46-167 9-144 (691)
185 3t34_A Dynamin-related protein 99.5 5.2E-15 1.8E-19 138.7 7.1 116 50-167 35-218 (360)
186 2h5e_A Peptide chain release f 99.5 7E-14 2.4E-18 137.9 13.4 119 47-167 11-149 (529)
187 2rdo_7 EF-G, elongation factor 99.5 2.5E-13 8.6E-18 138.1 16.5 120 46-167 7-149 (704)
188 1jwy_B Dynamin A GTPase domain 99.5 6.4E-14 2.2E-18 127.8 10.8 68 98-166 131-212 (315)
189 1wxq_A GTP-binding protein; st 99.5 7.1E-14 2.4E-18 133.3 11.5 85 50-134 1-114 (397)
190 2wsm_A Hydrogenase expression/ 99.5 9.8E-14 3.3E-18 119.9 8.8 152 49-265 30-215 (221)
191 2xex_A Elongation factor G; GT 99.5 2.4E-13 8.4E-18 138.0 12.0 116 46-167 7-142 (693)
192 1jal_A YCHF protein; nucleotid 99.4 1.1E-12 3.9E-17 123.5 14.5 84 50-133 3-108 (363)
193 2hf9_A Probable hydrogenase ni 99.4 6.1E-16 2.1E-20 134.3 -7.9 36 48-83 37-72 (226)
194 2x2e_A Dynamin-1; nitration, h 99.4 7.4E-14 2.5E-18 130.6 5.2 117 48-166 30-211 (353)
195 1n0u_A EF-2, elongation factor 99.4 5E-13 1.7E-17 138.3 7.6 117 47-165 17-163 (842)
196 2qpt_A EH domain-containing pr 99.4 5.8E-13 2E-17 131.9 6.9 119 46-166 62-232 (550)
197 3p32_A Probable GTPase RV1496/ 99.3 4.9E-13 1.7E-17 125.2 5.5 106 97-263 171-283 (355)
198 2dby_A GTP-binding protein; GD 99.3 8E-12 2.7E-16 118.0 10.5 84 50-133 2-111 (368)
199 2p67_A LAO/AO transport system 99.3 2.3E-12 7.7E-17 120.2 5.1 124 33-166 40-208 (341)
200 1yrb_A ATP(GTP)binding protein 99.3 1.1E-10 3.6E-15 103.4 15.0 68 98-166 109-185 (262)
201 2www_A Methylmalonic aciduria 99.2 1.4E-11 4.9E-16 115.3 8.6 59 98-165 167-225 (349)
202 2qm8_A GTPase/ATPase; G protei 99.2 8.5E-12 2.9E-16 116.3 5.6 39 33-71 39-77 (337)
203 2yv5_A YJEQ protein; hydrolase 99.1 1.4E-10 4.8E-15 106.3 10.6 101 107-261 65-166 (302)
204 3vqt_A RF-3, peptide chain rel 99.1 1.1E-09 3.8E-14 108.3 13.6 117 46-166 28-166 (548)
205 3zvr_A Dynamin-1; hydrolase, D 99.0 1.4E-09 4.7E-14 111.1 10.6 118 48-167 50-232 (772)
206 2ohf_A Protein OLA1, GTP-bindi 99.0 4.5E-10 1.5E-14 106.9 6.3 93 45-137 18-132 (396)
207 4a9a_A Ribosome-interacting GT 98.8 1.2E-08 4E-13 96.5 9.4 117 46-165 69-195 (376)
208 3j25_A Tetracycline resistance 98.8 2.6E-09 8.8E-14 107.5 4.6 116 50-167 3-134 (638)
209 4fn5_A EF-G 1, elongation fact 98.8 6.4E-08 2.2E-12 98.4 14.3 115 50-166 14-151 (709)
210 3l82_B F-box only protein 4; T 98.7 6.2E-09 2.1E-13 90.9 4.5 107 105-264 109-223 (227)
211 3h2y_A GTPase family protein; 98.6 5.2E-08 1.8E-12 91.7 7.3 99 107-261 55-157 (368)
212 3uc9_A Increased recombination 98.6 2.3E-07 7.8E-12 81.8 9.8 173 49-274 27-209 (233)
213 2qag_B Septin-6, protein NEDD5 98.6 4E-07 1.4E-11 87.3 11.8 133 30-166 22-190 (427)
214 3l2o_B F-box only protein 4; s 98.5 8.3E-08 2.8E-12 87.6 4.8 108 105-264 194-308 (312)
215 3ec1_A YQEH GTPase; atnos1, at 98.4 1.6E-07 5.5E-12 88.3 5.1 100 107-262 57-160 (369)
216 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3.6E-07 1.2E-11 86.8 7.3 89 45-133 16-127 (392)
217 3sop_A Neuronal-specific septi 98.3 1.5E-06 5.1E-11 78.3 8.0 115 49-166 2-154 (270)
218 2j37_W Signal recognition part 98.2 1.1E-06 3.7E-11 86.0 5.2 114 48-166 100-254 (504)
219 1puj_A YLQF, conserved hypothe 98.2 1.8E-06 6E-11 78.3 5.9 99 102-262 3-104 (282)
220 1tq4_A IIGP1, interferon-induc 98.1 1.1E-05 3.7E-10 77.1 11.0 165 51-265 71-254 (413)
221 3ec1_A YQEH GTPase; atnos1, at 98.1 1.4E-06 4.8E-11 81.9 3.2 111 49-166 162-288 (369)
222 3h2y_A GTPase family protein; 98.1 1.6E-06 5.6E-11 81.4 3.5 113 49-166 160-287 (368)
223 3cnl_A YLQF, putative uncharac 98.0 3.6E-06 1.2E-10 75.4 3.9 58 50-111 100-157 (262)
224 1puj_A YLQF, conserved hypothe 97.9 1.1E-05 3.6E-10 73.1 6.0 59 47-109 118-176 (282)
225 3cnl_A YLQF, putative uncharac 97.5 4.9E-05 1.7E-09 68.0 3.7 81 116-261 16-98 (262)
226 1f5n_A Interferon-induced guan 97.5 7.5E-05 2.6E-09 74.3 5.4 63 48-110 37-103 (592)
227 3dm5_A SRP54, signal recogniti 97.5 8.1E-05 2.8E-09 71.6 4.9 114 49-166 100-253 (443)
228 1bif_A 6-phosphofructo-2-kinas 97.4 6E-06 2.1E-10 79.7 -3.5 103 48-152 38-150 (469)
229 2pcj_A ABC transporter, lipopr 97.3 0.00013 4.5E-09 63.5 3.3 43 31-73 12-54 (224)
230 1b0u_A Histidine permease; ABC 97.2 0.00017 5.9E-09 64.4 3.7 43 31-73 14-56 (262)
231 4g1u_C Hemin import ATP-bindin 97.2 0.00016 5.6E-09 64.7 3.3 43 31-73 19-61 (266)
232 1g6h_A High-affinity branched- 97.2 0.00017 5.8E-09 64.1 3.3 43 31-73 15-57 (257)
233 2v3c_C SRP54, signal recogniti 97.2 0.00032 1.1E-08 67.2 5.2 66 97-166 180-252 (432)
234 2olj_A Amino acid ABC transpor 97.2 0.00022 7.5E-09 63.8 3.7 43 31-73 32-74 (263)
235 1mv5_A LMRA, multidrug resista 97.2 0.00023 7.9E-09 62.7 3.7 42 32-73 10-52 (243)
236 2zu0_C Probable ATP-dependent 97.1 0.00025 8.6E-09 63.5 3.8 42 31-72 28-69 (267)
237 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00023 8E-09 66.6 3.7 44 31-74 12-55 (359)
238 1vpl_A ABC transporter, ATP-bi 97.1 0.00025 8.5E-09 63.2 3.7 43 31-73 23-65 (256)
239 1ji0_A ABC transporter; ATP bi 97.1 0.00022 7.5E-09 62.8 3.2 43 31-73 14-56 (240)
240 1sgw_A Putative ABC transporte 97.1 0.00023 7.7E-09 61.8 3.2 42 31-73 18-59 (214)
241 2ihy_A ABC transporter, ATP-bi 97.1 0.00022 7.5E-09 64.3 3.3 43 31-73 29-71 (279)
242 2cbz_A Multidrug resistance-as 97.1 0.00029 1E-08 61.9 4.0 42 32-73 12-55 (237)
243 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00023 8E-09 63.0 3.3 42 31-72 11-52 (250)
244 2ff7_A Alpha-hemolysin translo 97.1 0.00027 9.3E-09 62.5 3.4 39 35-73 21-59 (247)
245 3szr_A Interferon-induced GTP- 97.1 0.0011 3.9E-08 66.0 8.1 25 50-74 46-70 (608)
246 3gfo_A Cobalt import ATP-bindi 97.1 0.0003 1E-08 63.3 3.6 43 31-73 15-58 (275)
247 3rlf_A Maltose/maltodextrin im 97.1 0.00031 1.1E-08 66.3 3.8 44 31-74 11-54 (381)
248 2ixe_A Antigen peptide transpo 97.0 0.00036 1.2E-08 62.6 3.8 42 32-73 25-69 (271)
249 2pze_A Cystic fibrosis transme 97.0 0.00038 1.3E-08 60.8 3.5 39 35-73 20-58 (229)
250 1z6g_A Guanylate kinase; struc 97.0 0.00035 1.2E-08 60.3 3.2 36 38-73 12-47 (218)
251 2nq2_C Hypothetical ABC transp 97.0 0.00036 1.2E-08 62.0 3.3 43 31-73 12-55 (253)
252 3tif_A Uncharacterized ABC tra 97.0 0.00036 1.2E-08 61.2 3.3 37 37-73 19-55 (235)
253 2it1_A 362AA long hypothetical 97.0 0.00043 1.5E-08 64.8 4.0 43 31-73 11-53 (362)
254 2yyz_A Sugar ABC transporter, 97.0 0.00041 1.4E-08 64.9 3.7 43 31-73 11-53 (359)
255 2jeo_A Uridine-cytidine kinase 97.0 0.00038 1.3E-08 60.9 3.3 40 32-71 8-47 (245)
256 1z47_A CYSA, putative ABC-tran 96.9 0.00044 1.5E-08 64.6 3.6 42 32-73 23-65 (355)
257 3gd7_A Fusion complex of cysti 96.9 0.00054 1.8E-08 64.8 4.1 42 31-72 27-70 (390)
258 2ghi_A Transport protein; mult 96.9 0.00054 1.9E-08 61.0 3.8 37 37-73 34-70 (260)
259 1v43_A Sugar-binding transport 96.9 0.0005 1.7E-08 64.6 3.8 43 31-73 19-61 (372)
260 3nh6_A ATP-binding cassette SU 96.9 0.00036 1.2E-08 63.8 2.4 42 32-73 62-104 (306)
261 1htw_A HI0065; nucleotide-bind 96.9 0.0002 6.9E-09 59.2 0.6 42 32-73 16-57 (158)
262 1g29_1 MALK, maltose transport 96.9 0.0005 1.7E-08 64.6 3.3 43 31-73 11-53 (372)
263 2yz2_A Putative ABC transporte 96.8 0.00063 2.1E-08 60.8 3.7 38 36-73 20-57 (266)
264 3kl4_A SRP54, signal recogniti 96.8 0.0008 2.7E-08 64.5 4.3 22 49-70 97-118 (433)
265 3d31_A Sulfate/molybdate ABC t 96.8 0.00054 1.8E-08 63.8 2.7 42 31-73 9-50 (348)
266 2rcn_A Probable GTPase ENGC; Y 96.8 0.0063 2.2E-07 56.8 9.9 49 117-166 126-174 (358)
267 2pjz_A Hypothetical protein ST 96.8 0.00064 2.2E-08 60.8 3.0 37 36-73 18-54 (263)
268 3tr0_A Guanylate kinase, GMP k 96.7 0.00091 3.1E-08 56.0 3.6 26 47-72 5-30 (205)
269 1j8m_F SRP54, signal recogniti 96.7 0.0052 1.8E-07 55.8 8.7 65 97-165 180-252 (297)
270 1oxx_K GLCV, glucose, ABC tran 96.7 0.00046 1.6E-08 64.4 1.7 43 31-73 11-55 (353)
271 1t9h_A YLOQ, probable GTPase E 96.6 0.0012 4.2E-08 60.4 4.1 56 110-166 75-131 (307)
272 1lvg_A Guanylate kinase, GMP k 96.6 0.0009 3.1E-08 56.7 2.9 24 49-72 4-27 (198)
273 2onk_A Molybdate/tungstate ABC 96.6 0.0012 4.2E-08 58.1 3.7 39 32-73 10-48 (240)
274 1kgd_A CASK, peripheral plasma 96.6 0.0013 4.3E-08 54.7 3.5 24 49-72 5-28 (180)
275 4gp7_A Metallophosphoesterase; 96.6 0.00095 3.3E-08 55.2 2.6 28 43-70 3-30 (171)
276 3ney_A 55 kDa erythrocyte memb 96.6 0.0014 4.6E-08 56.3 3.6 31 42-72 12-42 (197)
277 2v9p_A Replication protein E1; 96.5 0.00057 1.9E-08 62.6 1.1 37 36-72 113-149 (305)
278 3vaa_A Shikimate kinase, SK; s 96.5 0.0016 5.3E-08 54.9 3.7 34 38-71 14-47 (199)
279 2bbs_A Cystic fibrosis transme 96.5 0.0014 4.8E-08 59.4 3.5 39 35-73 50-88 (290)
280 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.3E-08 54.6 3.5 28 46-73 3-30 (207)
281 3q5d_A Atlastin-1; G protein, 96.5 0.0039 1.3E-07 59.9 6.7 23 49-71 67-89 (447)
282 3lnc_A Guanylate kinase, GMP k 96.5 0.00096 3.3E-08 57.5 2.1 36 37-72 15-51 (231)
283 1ye8_A Protein THEP1, hypothet 96.5 0.0015 5.1E-08 54.8 3.2 23 51-73 2-24 (178)
284 3tui_C Methionine import ATP-b 96.5 0.0015 5.2E-08 61.2 3.5 37 37-73 42-78 (366)
285 3tau_A Guanylate kinase, GMP k 96.4 0.0018 6.1E-08 55.1 3.7 27 47-73 6-32 (208)
286 2qi9_C Vitamin B12 import ATP- 96.4 0.0014 4.9E-08 58.0 3.0 37 37-73 14-50 (249)
287 1zp6_A Hypothetical protein AT 96.4 0.002 6.8E-08 53.4 3.6 26 47-72 7-32 (191)
288 1znw_A Guanylate kinase, GMP k 96.4 0.0018 6.1E-08 55.0 3.4 30 44-73 15-44 (207)
289 1s96_A Guanylate kinase, GMP k 96.4 0.0018 6.3E-08 56.1 3.5 31 43-73 10-40 (219)
290 2qor_A Guanylate kinase; phosp 96.4 0.0022 7.5E-08 54.2 3.7 28 45-72 8-35 (204)
291 3c8u_A Fructokinase; YP_612366 96.3 0.0019 6.5E-08 54.9 3.1 26 47-72 20-45 (208)
292 4eun_A Thermoresistant glucoki 96.3 0.0022 7.5E-08 54.0 3.5 26 46-71 26-51 (200)
293 3b5x_A Lipid A export ATP-bind 96.3 0.0025 8.6E-08 62.9 4.2 42 32-73 350-393 (582)
294 3uie_A Adenylyl-sulfate kinase 96.3 0.0015 5.2E-08 55.0 2.3 39 34-72 10-48 (200)
295 3a00_A Guanylate kinase, GMP k 96.3 0.0018 6.3E-08 54.0 2.8 21 52-72 4-24 (186)
296 3b60_A Lipid A export ATP-bind 96.3 0.0024 8.2E-08 63.1 3.9 42 32-73 350-393 (582)
297 1ex7_A Guanylate kinase; subst 96.2 0.0023 8E-08 54.2 3.1 21 52-72 4-24 (186)
298 1t9h_A YLOQ, probable GTPase E 96.2 0.0019 6.3E-08 59.2 2.5 29 45-73 169-197 (307)
299 3b85_A Phosphate starvation-in 96.1 0.0007 2.4E-08 58.3 -0.6 42 27-72 4-45 (208)
300 3asz_A Uridine kinase; cytidin 96.1 0.0028 9.6E-08 53.5 3.1 26 47-72 4-29 (211)
301 1knq_A Gluconate kinase; ALFA/ 96.1 0.0037 1.3E-07 51.1 3.6 25 47-71 6-30 (175)
302 3ozx_A RNAse L inhibitor; ATP 96.0 0.0042 1.4E-07 61.0 4.4 44 30-73 6-49 (538)
303 3nwj_A ATSK2; P loop, shikimat 96.0 0.0016 5.4E-08 57.8 0.9 40 32-71 27-70 (250)
304 2yv5_A YJEQ protein; hydrolase 96.0 0.0078 2.7E-07 54.5 5.5 26 47-73 163-188 (302)
305 3qf4_B Uncharacterized ABC tra 96.0 0.0039 1.3E-07 61.9 3.8 42 32-73 363-405 (598)
306 1y63_A LMAJ004144AAA protein; 96.0 0.0048 1.6E-07 51.3 3.7 30 43-72 4-33 (184)
307 2x8a_A Nuclear valosin-contain 95.9 0.0021 7.2E-08 57.4 1.4 40 31-72 28-67 (274)
308 2yl4_A ATP-binding cassette SU 95.9 0.0036 1.2E-07 62.0 3.1 37 37-73 358-394 (595)
309 3qf4_A ABC transporter, ATP-bi 95.9 0.0033 1.1E-07 62.3 2.8 39 35-73 355-393 (587)
310 2wwf_A Thymidilate kinase, put 95.8 0.0061 2.1E-07 51.1 3.9 24 48-71 9-32 (212)
311 2eyu_A Twitching motility prot 95.8 0.0046 1.6E-07 55.0 3.2 34 37-72 15-48 (261)
312 3lw7_A Adenylate kinase relate 95.8 0.0053 1.8E-07 49.2 3.3 20 50-69 2-21 (179)
313 1cke_A CK, MSSA, protein (cyti 95.8 0.0058 2E-07 51.9 3.6 23 49-71 5-27 (227)
314 1kag_A SKI, shikimate kinase I 95.8 0.0056 1.9E-07 49.7 3.3 23 50-72 5-27 (173)
315 1ixz_A ATP-dependent metallopr 95.7 0.0032 1.1E-07 54.9 1.8 38 33-72 35-72 (254)
316 3kb2_A SPBC2 prophage-derived 95.7 0.0053 1.8E-07 49.6 3.0 22 51-72 3-24 (173)
317 3bk7_A ABC transporter ATP-bin 95.7 0.0076 2.6E-07 60.1 4.6 42 31-73 99-141 (607)
318 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0073 2.5E-07 59.2 4.4 42 31-73 29-71 (538)
319 4a82_A Cystic fibrosis transme 95.7 0.0038 1.3E-07 61.6 2.3 38 36-73 354-391 (578)
320 2iw3_A Elongation factor 3A; a 95.7 0.0053 1.8E-07 64.3 3.4 44 31-74 443-486 (986)
321 2gza_A Type IV secretion syste 95.7 0.0022 7.4E-08 59.8 0.4 34 40-73 166-199 (361)
322 3j16_B RLI1P; ribosome recycli 95.7 0.0084 2.9E-07 59.8 4.7 45 29-73 83-127 (608)
323 2qt1_A Nicotinamide riboside k 95.7 0.0077 2.6E-07 50.7 3.9 29 44-72 16-44 (207)
324 2bbw_A Adenylate kinase 4, AK4 95.6 0.0071 2.4E-07 52.6 3.7 22 49-70 27-48 (246)
325 2obl_A ESCN; ATPase, hydrolase 95.6 0.0045 1.5E-07 57.5 2.5 41 32-73 54-95 (347)
326 2bdt_A BH3686; alpha-beta prot 95.6 0.0054 1.9E-07 50.8 2.8 21 51-71 4-24 (189)
327 3b9q_A Chloroplast SRP recepto 95.6 0.007 2.4E-07 55.0 3.6 30 42-71 93-122 (302)
328 2dpy_A FLII, flagellum-specifi 95.6 0.0057 1.9E-07 58.6 3.0 41 32-73 140-181 (438)
329 3aez_A Pantothenate kinase; tr 95.6 0.0071 2.4E-07 55.2 3.6 27 46-72 87-113 (312)
330 1kht_A Adenylate kinase; phosp 95.6 0.0078 2.7E-07 49.4 3.5 23 49-71 3-25 (192)
331 1ly1_A Polynucleotide kinase; 95.6 0.0067 2.3E-07 49.3 3.1 21 51-71 4-24 (181)
332 3ec2_A DNA replication protein 95.6 0.0056 1.9E-07 50.4 2.6 24 49-72 38-61 (180)
333 1nn5_A Similar to deoxythymidy 95.5 0.0083 2.8E-07 50.3 3.6 25 47-71 7-31 (215)
334 2cdn_A Adenylate kinase; phosp 95.5 0.0093 3.2E-07 49.9 3.9 26 46-71 17-42 (201)
335 3cm0_A Adenylate kinase; ATP-b 95.5 0.0076 2.6E-07 49.5 3.2 23 49-71 4-26 (186)
336 2rcn_A Probable GTPase ENGC; Y 95.5 0.0084 2.9E-07 56.0 3.7 27 48-74 214-240 (358)
337 2i3b_A HCR-ntpase, human cance 95.4 0.0071 2.4E-07 51.1 2.9 22 51-72 3-24 (189)
338 1iy2_A ATP-dependent metallopr 95.4 0.0048 1.6E-07 54.7 1.9 39 33-73 59-97 (278)
339 3fb4_A Adenylate kinase; psych 95.4 0.008 2.7E-07 50.8 3.2 22 50-71 1-22 (216)
340 3t61_A Gluconokinase; PSI-biol 95.4 0.0092 3.2E-07 50.0 3.5 23 50-72 19-41 (202)
341 4a74_A DNA repair and recombin 95.4 0.0072 2.4E-07 51.2 2.8 27 46-72 22-48 (231)
342 2f6r_A COA synthase, bifunctio 95.4 0.013 4.3E-07 52.5 4.5 24 47-70 73-96 (281)
343 3dl0_A Adenylate kinase; phosp 95.4 0.0089 3.1E-07 50.6 3.3 22 50-71 1-22 (216)
344 1np6_A Molybdopterin-guanine d 95.4 0.008 2.7E-07 50.3 2.9 23 50-72 7-29 (174)
345 2rhm_A Putative kinase; P-loop 95.4 0.01 3.4E-07 48.9 3.5 22 50-71 6-27 (193)
346 3iij_A Coilin-interacting nucl 95.4 0.01 3.6E-07 48.6 3.6 24 48-71 10-33 (180)
347 1nks_A Adenylate kinase; therm 95.4 0.0092 3.1E-07 48.9 3.2 21 51-71 3-23 (194)
348 2jaq_A Deoxyguanosine kinase; 95.3 0.0098 3.4E-07 49.3 3.4 21 51-71 2-22 (205)
349 1qhx_A CPT, protein (chloramph 95.3 0.0088 3E-07 48.8 3.1 23 50-72 4-26 (178)
350 4e22_A Cytidylate kinase; P-lo 95.3 0.011 3.8E-07 51.8 3.9 24 47-70 25-48 (252)
351 1lw7_A Transcriptional regulat 95.3 0.0064 2.2E-07 56.3 2.5 32 42-73 161-194 (365)
352 2v54_A DTMP kinase, thymidylat 95.3 0.012 3.9E-07 49.1 3.8 24 49-72 4-27 (204)
353 2if2_A Dephospho-COA kinase; a 95.3 0.0095 3.2E-07 49.9 3.1 22 50-71 2-23 (204)
354 1u0l_A Probable GTPase ENGC; p 95.3 0.011 3.6E-07 53.5 3.5 27 48-74 168-194 (301)
355 2plr_A DTMP kinase, probable t 95.2 0.012 4E-07 49.1 3.5 23 49-71 4-26 (213)
356 2ehv_A Hypothetical protein PH 95.2 0.01 3.6E-07 50.8 3.2 26 45-70 26-51 (251)
357 2vp4_A Deoxynucleoside kinase; 95.2 0.0098 3.4E-07 51.3 3.0 30 43-72 14-43 (230)
358 3trf_A Shikimate kinase, SK; a 95.2 0.012 4.2E-07 48.3 3.4 22 50-71 6-27 (185)
359 1rz3_A Hypothetical protein rb 95.1 0.013 4.5E-07 49.3 3.3 25 47-71 20-44 (201)
360 1aky_A Adenylate kinase; ATP:A 95.0 0.015 5.1E-07 49.4 3.6 23 49-71 4-26 (220)
361 1cr0_A DNA primase/helicase; R 95.0 0.012 4.1E-07 52.5 3.1 37 37-73 23-59 (296)
362 2c95_A Adenylate kinase 1; tra 95.0 0.013 4.4E-07 48.4 3.1 24 48-71 8-31 (196)
363 4f4c_A Multidrug resistance pr 95.0 0.0083 2.8E-07 64.9 2.3 36 37-72 1093-1128(1321)
364 2f1r_A Molybdopterin-guanine d 95.0 0.0058 2E-07 51.0 0.9 22 51-72 4-25 (171)
365 3tlx_A Adenylate kinase 2; str 95.0 0.015 5.1E-07 50.7 3.6 24 48-71 28-51 (243)
366 1ukz_A Uridylate kinase; trans 94.9 0.017 6E-07 48.1 3.8 23 49-71 15-37 (203)
367 1jjv_A Dephospho-COA kinase; P 94.9 0.014 4.8E-07 48.9 3.2 22 50-71 3-24 (206)
368 1e4v_A Adenylate kinase; trans 94.9 0.014 4.9E-07 49.4 3.2 22 50-71 1-22 (214)
369 1tev_A UMP-CMP kinase; ploop, 94.9 0.015 5.1E-07 47.7 3.2 22 50-71 4-25 (196)
370 2npi_A Protein CLP1; CLP1-PCF1 94.9 0.011 3.8E-07 56.9 2.7 31 42-72 131-161 (460)
371 3kta_A Chromosome segregation 94.9 0.016 5.3E-07 47.6 3.3 29 42-71 20-48 (182)
372 1jbk_A CLPB protein; beta barr 94.9 0.014 4.7E-07 47.1 2.9 23 50-72 44-66 (195)
373 1zd8_A GTP:AMP phosphotransfer 94.9 0.016 5.5E-07 49.5 3.4 22 50-71 8-29 (227)
374 3sr0_A Adenylate kinase; phosp 94.8 0.016 5.4E-07 49.7 3.3 22 50-71 1-22 (206)
375 1sq5_A Pantothenate kinase; P- 94.8 0.015 5.2E-07 52.6 3.4 26 47-72 78-103 (308)
376 4eaq_A DTMP kinase, thymidylat 94.8 0.018 6.2E-07 49.9 3.7 25 48-72 25-49 (229)
377 1zak_A Adenylate kinase; ATP:A 94.8 0.017 5.9E-07 49.1 3.4 22 50-71 6-27 (222)
378 1odf_A YGR205W, hypothetical 3 94.8 0.017 5.7E-07 52.2 3.4 24 48-71 30-53 (290)
379 1via_A Shikimate kinase; struc 94.8 0.017 5.7E-07 47.2 3.1 21 51-71 6-26 (175)
380 2vli_A Antibiotic resistance p 94.7 0.013 4.4E-07 47.9 2.4 23 49-71 5-27 (183)
381 2yhs_A FTSY, cell division pro 94.7 0.019 6.6E-07 55.8 3.8 31 41-71 285-315 (503)
382 2pt5_A Shikimate kinase, SK; a 94.7 0.02 6.8E-07 46.2 3.3 21 51-71 2-22 (168)
383 2yvu_A Probable adenylyl-sulfa 94.6 0.023 7.9E-07 46.8 3.7 24 48-71 12-35 (186)
384 3euj_A Chromosome partition pr 94.6 0.018 6.2E-07 55.8 3.3 34 37-71 18-51 (483)
385 2bwj_A Adenylate kinase 5; pho 94.6 0.022 7.4E-07 47.1 3.4 22 50-71 13-34 (199)
386 1gtv_A TMK, thymidylate kinase 94.6 0.0077 2.6E-07 50.6 0.6 21 51-71 2-22 (214)
387 1uf9_A TT1252 protein; P-loop, 94.6 0.023 7.8E-07 47.1 3.5 24 49-72 8-31 (203)
388 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.018 6E-07 48.6 2.8 27 46-72 20-46 (235)
389 1gvn_B Zeta; postsegregational 94.5 0.021 7.1E-07 51.3 3.4 23 49-71 33-55 (287)
390 2iw3_A Elongation factor 3A; a 94.5 0.011 3.6E-07 62.1 1.6 42 32-73 680-723 (986)
391 1qf9_A UMP/CMP kinase, protein 94.5 0.025 8.7E-07 46.2 3.7 22 50-71 7-28 (194)
392 1ak2_A Adenylate kinase isoenz 94.5 0.025 8.5E-07 48.7 3.7 25 47-71 14-38 (233)
393 1rj9_A FTSY, signal recognitio 94.5 0.022 7.4E-07 51.8 3.5 24 48-71 101-124 (304)
394 2og2_A Putative signal recogni 94.5 0.025 8.4E-07 52.8 3.9 30 42-71 150-179 (359)
395 2z0h_A DTMP kinase, thymidylat 94.5 0.023 7.7E-07 46.9 3.3 22 51-72 2-23 (197)
396 3r20_A Cytidylate kinase; stru 94.4 0.023 7.8E-07 49.8 3.4 25 47-71 7-31 (233)
397 1in4_A RUVB, holliday junction 94.4 0.0063 2.2E-07 55.6 -0.3 23 50-72 52-74 (334)
398 3g5u_A MCG1178, multidrug resi 94.4 0.019 6.5E-07 61.9 3.4 36 37-72 404-439 (1284)
399 2xb4_A Adenylate kinase; ATP-b 94.4 0.024 8.2E-07 48.5 3.4 21 51-71 2-22 (223)
400 3be4_A Adenylate kinase; malar 94.4 0.023 7.8E-07 48.3 3.2 22 50-71 6-27 (217)
401 2pbr_A DTMP kinase, thymidylat 94.4 0.024 8.2E-07 46.5 3.2 21 51-71 2-22 (195)
402 2kjq_A DNAA-related protein; s 94.3 0.016 5.4E-07 46.9 2.0 25 48-72 35-59 (149)
403 2pez_A Bifunctional 3'-phospho 94.3 0.026 8.8E-07 46.3 3.3 23 49-71 5-27 (179)
404 1tf7_A KAIC; homohexamer, hexa 94.3 0.023 7.8E-07 55.3 3.4 37 33-69 22-59 (525)
405 1xjc_A MOBB protein homolog; s 94.3 0.023 7.7E-07 47.4 2.9 23 50-72 5-27 (169)
406 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.0081 2.8E-07 55.2 0.1 36 38-73 160-195 (330)
407 1vht_A Dephospho-COA kinase; s 94.3 0.027 9.4E-07 47.6 3.5 23 49-71 4-26 (218)
408 2cvh_A DNA repair and recombin 94.2 0.029 1E-06 47.0 3.5 26 46-71 17-42 (220)
409 2ze6_A Isopentenyl transferase 94.2 0.024 8.2E-07 49.8 3.1 21 51-71 3-23 (253)
410 3e70_C DPA, signal recognition 94.2 0.027 9.2E-07 51.8 3.5 25 47-71 127-151 (328)
411 3tqc_A Pantothenate kinase; bi 94.2 0.027 9.3E-07 51.7 3.5 24 49-72 92-115 (321)
412 2iyv_A Shikimate kinase, SK; t 94.2 0.026 9E-07 46.3 3.1 22 50-71 3-24 (184)
413 3cwq_A Para family chromosome 94.2 0.034 1.2E-06 47.2 3.9 66 97-165 67-133 (209)
414 1e6c_A Shikimate kinase; phosp 94.1 0.026 9E-07 45.5 3.0 21 51-71 4-24 (173)
415 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.029 9.8E-07 49.3 3.4 22 50-71 5-26 (260)
416 3g5u_A MCG1178, multidrug resi 94.1 0.032 1.1E-06 60.1 4.4 37 37-73 1047-1083(1284)
417 1svm_A Large T antigen; AAA+ f 94.1 0.019 6.6E-07 53.8 2.3 34 38-71 158-191 (377)
418 3jvv_A Twitching mobility prot 94.1 0.023 7.9E-07 52.8 2.9 23 50-72 124-146 (356)
419 2p65_A Hypothetical protein PF 94.1 0.019 6.4E-07 46.4 2.0 23 50-72 44-66 (187)
420 4f4c_A Multidrug resistance pr 94.1 0.025 8.7E-07 61.1 3.5 36 37-72 432-467 (1321)
421 3bos_A Putative DNA replicatio 94.0 0.026 8.9E-07 47.6 2.8 24 49-72 52-75 (242)
422 1q3t_A Cytidylate kinase; nucl 94.0 0.037 1.3E-06 47.7 3.7 29 43-71 10-38 (236)
423 3ux8_A Excinuclease ABC, A sub 94.0 0.02 7E-07 57.3 2.3 33 37-69 336-368 (670)
424 1m7g_A Adenylylsulfate kinase; 93.9 0.034 1.2E-06 47.0 3.3 25 47-71 23-47 (211)
425 2p5t_B PEZT; postsegregational 93.9 0.025 8.4E-07 49.5 2.5 25 48-72 31-55 (253)
426 3v9p_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 48.7 2.9 26 46-71 22-47 (227)
427 2ewv_A Twitching motility prot 93.8 0.033 1.1E-06 51.9 3.3 27 46-72 133-159 (372)
428 1zcb_A G alpha I/13; GTP-bindi 93.8 0.034 1.2E-06 51.8 3.3 24 47-70 31-54 (362)
429 1lv7_A FTSH; alpha/beta domain 93.8 0.031 1.1E-06 48.5 2.9 22 51-72 47-68 (257)
430 1n0w_A DNA repair protein RAD5 93.8 0.033 1.1E-06 47.4 3.0 27 46-72 21-47 (243)
431 3umf_A Adenylate kinase; rossm 93.7 0.036 1.2E-06 48.0 3.2 23 49-71 28-51 (217)
432 1njg_A DNA polymerase III subu 93.7 0.033 1.1E-06 46.4 2.9 21 51-71 47-67 (250)
433 1nij_A Hypothetical protein YJ 93.6 0.026 8.8E-07 51.4 2.2 24 50-73 5-28 (318)
434 1uj2_A Uridine-cytidine kinase 93.6 0.038 1.3E-06 48.1 3.2 23 49-71 22-44 (252)
435 2chg_A Replication factor C sm 93.6 0.035 1.2E-06 45.8 2.8 22 51-72 40-61 (226)
436 2w58_A DNAI, primosome compone 93.6 0.036 1.2E-06 46.1 2.8 23 50-72 55-77 (202)
437 3bk7_A ABC transporter ATP-bin 93.5 0.044 1.5E-06 54.5 3.8 35 39-73 372-406 (607)
438 2oap_1 GSPE-2, type II secreti 93.5 0.018 6.2E-07 56.2 1.0 32 42-73 253-284 (511)
439 3ux8_A Excinuclease ABC, A sub 93.5 0.033 1.1E-06 55.8 2.9 32 35-66 30-61 (670)
440 3ozx_A RNAse L inhibitor; ATP 93.2 0.042 1.4E-06 53.9 3.1 32 42-73 287-318 (538)
441 1ltq_A Polynucleotide kinase; 93.2 0.047 1.6E-06 48.5 3.1 21 51-71 4-24 (301)
442 1p9r_A General secretion pathw 93.1 0.044 1.5E-06 52.1 2.9 25 48-72 166-190 (418)
443 1zuh_A Shikimate kinase; alpha 93.0 0.053 1.8E-06 43.8 3.0 22 50-71 8-29 (168)
444 3b9p_A CG5977-PA, isoform A; A 93.0 0.047 1.6E-06 48.3 2.8 23 50-72 55-77 (297)
445 1yqt_A RNAse L inhibitor; ATP- 93.0 0.049 1.7E-06 53.3 3.2 34 40-73 303-336 (538)
446 4aby_A DNA repair protein RECN 93.0 0.016 5.6E-07 54.0 -0.2 33 37-70 49-81 (415)
447 2dr3_A UPF0273 protein PH0284; 93.0 0.052 1.8E-06 46.2 3.0 26 46-71 20-45 (247)
448 2qz4_A Paraplegin; AAA+, SPG7, 93.0 0.049 1.7E-06 46.9 2.9 23 50-72 40-62 (262)
449 1nlf_A Regulatory protein REPA 92.8 0.051 1.7E-06 48.0 2.8 26 46-71 27-52 (279)
450 3h4m_A Proteasome-activating n 92.8 0.068 2.3E-06 46.9 3.5 24 49-72 51-74 (285)
451 2qby_A CDC6 homolog 1, cell di 92.7 0.053 1.8E-06 49.1 2.8 23 50-72 46-68 (386)
452 1sxj_D Activator 1 41 kDa subu 92.7 0.051 1.7E-06 49.0 2.6 23 50-72 59-81 (353)
453 2dhr_A FTSH; AAA+ protein, hex 92.7 0.06 2.1E-06 52.3 3.2 35 36-72 53-87 (499)
454 3n70_A Transport activator; si 92.6 0.067 2.3E-06 42.5 2.9 24 50-73 25-48 (145)
455 1l8q_A Chromosomal replication 92.5 0.058 2E-06 48.5 2.8 23 50-72 38-60 (324)
456 1a7j_A Phosphoribulokinase; tr 92.4 0.047 1.6E-06 49.1 2.0 23 49-71 5-27 (290)
457 3k1j_A LON protease, ATP-depen 92.4 0.033 1.1E-06 55.2 0.9 43 31-73 42-84 (604)
458 3t15_A Ribulose bisphosphate c 92.3 0.067 2.3E-06 47.9 2.9 23 50-72 37-59 (293)
459 1sxj_C Activator 1 40 kDa subu 92.3 0.033 1.1E-06 50.6 0.8 22 51-72 48-69 (340)
460 1ofh_A ATP-dependent HSL prote 92.3 0.069 2.3E-06 47.1 2.9 23 50-72 51-73 (310)
461 3syl_A Protein CBBX; photosynt 92.3 0.091 3.1E-06 46.5 3.7 23 49-71 67-89 (309)
462 3ake_A Cytidylate kinase; CMP 92.2 0.08 2.7E-06 43.9 3.0 21 51-71 4-24 (208)
463 2qmh_A HPR kinase/phosphorylas 92.1 0.09 3.1E-06 45.2 3.3 25 49-73 34-58 (205)
464 1fnn_A CDC6P, cell division co 92.1 0.071 2.4E-06 48.5 2.9 22 51-72 46-67 (389)
465 3cf0_A Transitional endoplasmi 92.1 0.091 3.1E-06 47.0 3.5 24 49-72 49-72 (301)
466 3j16_B RLI1P; ribosome recycli 92.1 0.084 2.9E-06 52.5 3.5 37 38-74 362-403 (608)
467 1sxj_E Activator 1 40 kDa subu 92.1 0.061 2.1E-06 48.7 2.3 21 51-71 38-58 (354)
468 1d2n_A N-ethylmaleimide-sensit 92.0 0.075 2.6E-06 46.5 2.8 23 50-72 65-87 (272)
469 4ido_A Atlastin-1; GTPase, GTP 92.0 0.25 8.5E-06 47.5 6.5 62 48-109 66-151 (457)
470 4fcw_A Chaperone protein CLPB; 91.9 0.079 2.7E-06 46.9 2.8 22 51-72 49-70 (311)
471 3zvl_A Bifunctional polynucleo 91.7 0.12 4E-06 48.8 4.0 24 49-72 258-281 (416)
472 2qen_A Walker-type ATPase; unk 91.7 0.094 3.2E-06 46.8 3.1 22 51-72 33-54 (350)
473 1f2t_A RAD50 ABC-ATPase; DNA d 91.7 0.11 3.6E-06 41.9 3.1 19 52-70 26-44 (149)
474 2grj_A Dephospho-COA kinase; T 91.6 0.1 3.5E-06 44.0 3.1 25 48-72 11-35 (192)
475 2v1u_A Cell division control p 91.6 0.075 2.6E-06 48.1 2.3 23 50-72 45-67 (387)
476 1p5z_B DCK, deoxycytidine kina 91.5 0.066 2.3E-06 46.8 1.9 24 48-71 23-46 (263)
477 2fna_A Conserved hypothetical 91.5 0.089 3.1E-06 47.0 2.8 22 51-72 32-53 (357)
478 3d3q_A TRNA delta(2)-isopenten 91.5 0.097 3.3E-06 48.4 3.0 22 50-71 8-29 (340)
479 2px0_A Flagellar biosynthesis 91.4 0.12 4E-06 46.7 3.5 114 48-166 104-253 (296)
480 1pzn_A RAD51, DNA repair and r 91.4 0.095 3.2E-06 48.3 2.9 30 44-73 126-155 (349)
481 3qf7_A RAD50; ABC-ATPase, ATPa 91.4 0.1 3.5E-06 48.3 3.1 28 42-70 17-44 (365)
482 1xwi_A SKD1 protein; VPS4B, AA 91.4 0.094 3.2E-06 47.6 2.8 23 50-72 46-68 (322)
483 1tue_A Replication protein E1; 91.4 0.075 2.6E-06 45.9 2.0 21 51-71 60-80 (212)
484 3uk6_A RUVB-like 2; hexameric 91.4 0.093 3.2E-06 47.7 2.8 23 50-72 71-93 (368)
485 2xtz_A Guanine nucleotide-bind 91.3 0.1 3.4E-06 48.5 3.0 22 49-70 9-30 (354)
486 3crm_A TRNA delta(2)-isopenten 91.3 0.11 3.7E-06 47.8 3.1 21 51-71 7-27 (323)
487 1vma_A Cell division protein F 91.3 0.13 4.4E-06 46.7 3.6 25 47-71 102-126 (306)
488 2ocp_A DGK, deoxyguanosine kin 91.3 0.12 4.2E-06 44.4 3.3 23 50-72 3-25 (241)
489 2h92_A Cytidylate kinase; ross 91.3 0.12 4.2E-06 43.4 3.3 22 50-71 4-25 (219)
490 3eie_A Vacuolar protein sortin 91.2 0.1 3.4E-06 47.2 2.8 23 50-72 52-74 (322)
491 3co5_A Putative two-component 91.2 0.064 2.2E-06 42.5 1.3 23 50-72 28-50 (143)
492 3tmk_A Thymidylate kinase; pho 91.1 0.16 5.4E-06 43.8 3.8 25 48-72 4-28 (216)
493 2r62_A Cell division protease 91.1 0.05 1.7E-06 47.4 0.6 21 52-72 47-67 (268)
494 3exa_A TRNA delta(2)-isopenten 91.1 0.12 4.1E-06 47.5 3.1 22 51-72 5-26 (322)
495 3pfi_A Holliday junction ATP-d 91.0 0.11 3.7E-06 46.8 2.8 23 50-72 56-78 (338)
496 2qby_B CDC6 homolog 3, cell di 91.0 0.11 3.7E-06 47.4 2.8 22 51-72 47-68 (384)
497 3lda_A DNA repair protein RAD5 91.0 0.11 3.8E-06 49.0 3.0 25 46-70 175-199 (400)
498 2o5v_A DNA replication and rep 90.9 0.11 3.9E-06 48.2 3.0 32 39-71 17-48 (359)
499 3a8t_A Adenylate isopentenyltr 90.9 0.13 4.4E-06 47.6 3.2 22 51-72 42-63 (339)
500 3cr8_A Sulfate adenylyltranfer 90.9 0.076 2.6E-06 52.3 1.8 27 46-72 366-392 (552)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.9e-36 Score=263.76 Aligned_cols=167 Identities=19% Similarity=0.320 Sum_probs=136.2
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.+.+.+||+|+|++|||||||++||+.+.|...+.+|++.++....+..++..+.++||||+|+++|+.+...|++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 45567999999999999999999999999999999999999888888888889999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcCC--CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQKF--EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~~--~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||+++++||+.+..|+..+..... .|++|||||+|+.. .|++
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~--------~r~V------------------------ 136 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD--------KRQV------------------------ 136 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG--------GCCS------------------------
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh--------cCcc------------------------
Confidence 9999999999999999999999976643 39999999999943 3334
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+.+ ++.+++..++++|+||||++| .||+++|+.|++.+...
T Consensus 137 --~~~--------e~~~~a~~~~~~~~e~SAktg------------~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 137 --SIE--------EGERKAKELNVMFIETSAKAG------------YNVKQLFRRVAAALPGM 177 (216)
T ss_dssp --CHH--------HHHHHHHHHTCEEEEEBTTTT------------BSHHHHHHHHHHHC---
T ss_pred --cHH--------HHhhHHHHhCCeeEEEeCCCC------------cCHHHHHHHHHHHHHhh
Confidence 222 288999999999999999999 99999999999987643
No 2
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=5.7e-30 Score=217.27 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=146.3
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
......+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 34456689999999999999999999999988888888888887777777777889999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 124 ALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 124 ~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
++|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.......
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~------------------------------ 140 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD------------------------------ 140 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC------------------------------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccC------------------------------
Confidence 9999999999999999999999987764 34999999999996432111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
...+..++..++++|++|||+++ .|++++|.+|.+.+.....
T Consensus 141 ------------~~~~~~~~~~~~~~~~~~Sa~~g------------~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 141 ------------YTTAKEFADSLGIPFLETSAKNA------------TNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp ------------HHHHHHHHHHTTCCEEEECTTTC------------TTHHHHHHHHHHHHHHHC-
T ss_pred ------------HHHHHHHHHHcCCcEEEEeCCCC------------CCHHHHHHHHHHHHHHHhc
Confidence 12267889999999999999999 9999999999998876543
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=1.7e-30 Score=218.46 Aligned_cols=167 Identities=19% Similarity=0.284 Sum_probs=114.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+.+|.+.++....+..++..+.+.+|||||++.|..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45689999999999999999999999887777788887776666666777789999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+..|+..+.... ..|+++||||+|+.....+.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--------------------------------- 132 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS--------------------------------- 132 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC---------------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCC---------------------------------
Confidence 9999999999999999999987753 34999999999996432111
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
...+..++..++++|++|||+++ .|++++|.+|.+.+.....
T Consensus 133 ---------~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 133 ---------KERGEKLALDYGIKFMETSAKAN------------INVENAFFTLARDIKAKMD 174 (183)
T ss_dssp ---------HHHHHHHHHHHTCEEEECCC---------------CCHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHHhh
Confidence 12267888889999999999999 9999999999998876543
No 4
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=211.86 Aligned_cols=167 Identities=17% Similarity=0.270 Sum_probs=141.5
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
..+.+||+|+|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+|||||++.+..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45568999999999999999999999998878888888888777777777778999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|+|||++++.+|+.+..|+..+..... .|+++|+||+|+..... +
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~-------------------------- 131 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKV--------V-------------------------- 131 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCC--------S--------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcc--------c--------------------------
Confidence 999999999999999999999876653 49999999999853211 1
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. ...+..++...+++++++||++| .|++++|++|.+.+....
T Consensus 132 ~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 132 E--------TEDAYKFAGQMGIQLFETSAKEN------------VNVEEMFNCITELVLRAK 173 (181)
T ss_dssp C--------HHHHHHHHHHHTCCEEECBTTTT------------BSHHHHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHHHHHh
Confidence 0 12267888889999999999999 999999999999876554
No 5
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.4e-29 Score=208.80 Aligned_cols=163 Identities=17% Similarity=0.292 Sum_probs=139.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+|+|++|||||||+++|+++.+...+.++.+..+....+...+..+.+.+|||||++.|...+..+++.+|++|+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 45899999999999999999999999888788888888766666667778899999999999999999899999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++.+|+.+..|+..+.... ..|+++||||+|+.... .+ .
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~--------~~--------------------------~ 130 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR--------AV--------------------------D 130 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--------CS--------------------------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc--------cc--------------------------C
Confidence 999999999999999999887664 33899999999995321 11 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.+.+..++..++++|+++||++| .|++++|++|.+.+.+
T Consensus 131 --------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 131 --------FQEAQSYADDNSLLFMETSAKTS------------MNVNEIFMAIAKKLPK 169 (170)
T ss_dssp --------HHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHHHHTSCC
T ss_pred --------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHhh
Confidence 12267888889999999999999 9999999999987643
No 6
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.7e-29 Score=208.98 Aligned_cols=164 Identities=17% Similarity=0.269 Sum_probs=134.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+.++.+..+....+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 34589999999999999999999999988778888888877677777778889999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~-------------------------- 129 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER--------HV-------------------------- 129 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC--------CS--------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc--------cc--------------------------
Confidence 9999999999999999998886643 34899999999995321 11
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
+ .+.+..++...+++++++||+++ .|++++|++|++.+.+
T Consensus 130 ~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 130 S--------IQEAESYAESVGAKHYHTSAKQN------------KGIEELFLDLCKRMIE 169 (170)
T ss_dssp C--------HHHHHHHHHHTTCEEEEEBTTTT------------BSHHHHHHHHHHHHHC
T ss_pred C--------HHHHHHHHHHcCCeEEEecCCCC------------CCHHHHHHHHHHHHhh
Confidence 1 12267888889999999999999 9999999999987653
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=3.5e-29 Score=210.07 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=139.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||||++.|..++..+++.+|++|+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 358999999999999999999999988888888888777 4555667777899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+|+.+..|+..+.... ..|+++||||+|+......
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---------------------------------- 129 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI---------------------------------- 129 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCS----------------------------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhccee----------------------------------
Confidence 999999999999999998885542 3489999999999542211
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. ...+..++..++++|+++||+++ .|++++|..|++.+....
T Consensus 130 ~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 130 S--------YEEGKALAESWNAAFLESSAKEN------------QTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp C--------HHHHHHHHHHTTCEEEECCTTSH------------HHHHHHHHHHHHHHHTC-
T ss_pred c--------HHHHHHHHHHhCCcEEEEecCCC------------CCHHHHHHHHHHHHHHhc
Confidence 1 12278899999999999999999 999999999999887654
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=219.82 Aligned_cols=168 Identities=19% Similarity=0.324 Sum_probs=144.3
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|.++.+...+.+|.+.++....+..++..+.+.+|||+|++.|..+...+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 44566899999999999999999999999988888899888877777777778899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++||||+|+... +++
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~--------~~v------------------------ 149 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER--------REV------------------------ 149 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--------CSS------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--------ccc------------------------
Confidence 999999999999999999999987764 3489999999999532 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. .+.+..++...+++|++|||++| .||+++|.+|++.+....
T Consensus 150 --~--------~~~~~~~~~~~~~~~~~~Sa~~g------------~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 150 --S--------QQRAEEFSEAQDMYYLETSAKES------------DNVEKLFLDLACRLISEA 191 (201)
T ss_dssp --C--------HHHHHHHHHHHTCCEEECCTTTC------------TTHHHHHHHHHHHHHHHH
T ss_pred --C--------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHH
Confidence 1 12267788888999999999999 999999999999887543
No 9
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=4.2e-29 Score=206.31 Aligned_cols=162 Identities=18% Similarity=0.308 Sum_probs=140.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+|+|++|||||||+++|.++.+...+.++.+..+....+...+....+.+|||||++.+..+...+++.+|++|+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 45899999999999999999999999888888888888776667667777899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCC--eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFE--ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~--~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++.+++.+..|+..+.....+ |+++|+||+|+.... ++
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~--------~v--------------------------- 129 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR--------EV--------------------------- 129 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC--------CS---------------------------
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc--------cc---------------------------
Confidence 99999999999999999999776433 899999999995321 11
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+.+..++..++++++++||+++ .|++++|++|.+.+.
T Consensus 130 -------~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 130 -------MERDAKDYADSIHAIFVETSAKNA------------ININELFIEISRRIP 168 (170)
T ss_dssp -------CHHHHHHHHHHTTCEEEECBTTTT------------BSHHHHHHHHHHHCC
T ss_pred -------CHHHHHHHHHHcCCEEEEEeCCCC------------cCHHHHHHHHHHHHh
Confidence 012267888889999999999999 999999999998764
No 10
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=2.6e-29 Score=218.93 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=139.8
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ 121 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ 121 (289)
........+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+..++..+.+.+|||+|++.|..++..+++.
T Consensus 20 ~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence 344556679999999999999999999999999888888988776 3455566678899999999999999999999999
Q ss_pred ccEEEEEEeCCCHhhHHH-HHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 122 LTALVMVFNLNDLSTLDA-LKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~-l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
+|++|+|||++++.+|+. +..|+..+..... .|+++||||+|+..... ....+.
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----~~~~~~-------------------- 154 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS----TLMELS-------------------- 154 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHH----HHHHHH--------------------
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchh----hhhhhc--------------------
Confidence 999999999999999999 6899999977643 49999999999964210 000000
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchh-HHHHHHHHHHhcccCc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQG-VERLYGALSAHMWPGM 266 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~-i~~l~~~L~~~~~~~~ 266 (289)
...........+..++..+++ +|+||||++| .| |+++|+.|++.+....
T Consensus 155 ------~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g------------~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 155 ------HQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS------------EKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp ------HTTCCCCCHHHHHHHHHHHTCSEEEECCTTTC------------HHHHHHHHHHHHHHHHC--
T ss_pred ------ccccCccCHHHHHHHHHHcCCCEEEEeccCCC------------cccHHHHHHHHHHHHhccC
Confidence 000000112347899999999 9999999999 98 9999999999887654
No 11
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.6e-29 Score=212.77 Aligned_cols=168 Identities=17% Similarity=0.301 Sum_probs=143.8
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.|..++..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 34556999999999999999999999999888888888888777777777777899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~------------------------ 133 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR--------EV------------------------ 133 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--------CS------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--------cc------------------------
Confidence 999999999999999999998887653 34999999999995321 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. ..++..++...+++|++|||+++ .|++++|.+|++.+....
T Consensus 134 --~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 134 --T--------FLEASRFAQENELMFLETSALTG------------ENVEEAFVQCARKILNKI 175 (186)
T ss_dssp --C--------HHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHHHHHHHHHH
T ss_pred --C--------HHHHHHHHHHcCCEEEEecCCCC------------CCHHHHHHHHHHHHHHHh
Confidence 1 12267888889999999999999 999999999999887654
No 12
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=5.9e-29 Score=208.11 Aligned_cols=166 Identities=17% Similarity=0.308 Sum_probs=140.9
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.+..+...+.++.+..+....+...+..+.+.+|||||++.|..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 34568999999999999999999999998877778888777666666677778999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.......
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-------------------------------- 136 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT-------------------------------- 136 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC--------------------------------
Confidence 99999999999999999999987765 34899999999996422110
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+.+..++..++++|+++||+++ .|++++|++|++.+...
T Consensus 137 ----------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 137 ----------AEDAQTYAQENGLFFMETSAKTA------------TNVKEIFYEIARRLPRV 176 (181)
T ss_dssp ----------HHHHHHHHHHTTCEEEECCSSSC------------TTHHHHHHHHHHTCC--
T ss_pred ----------HHHHHHHHHHcCCEEEEEECCCC------------CCHHHHHHHHHHHHHhc
Confidence 12267888889999999999999 99999999999977543
No 13
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=8.3e-30 Score=212.73 Aligned_cols=165 Identities=14% Similarity=0.199 Sum_probs=137.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCc-ceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKY-YTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
.+.+||+|+|++|||||||+++|.++.+...+.+|.+.++....+...+ ..+.+.+|||||++.|..++..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 3468999999999999999999999988766777887666655555544 568899999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhc-----CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQ-----KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~-----~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
|+|||++++.+|+.+..|+..+... ..+++++||||+|+... +.+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~--------~~~---------------------- 133 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM--------RTI---------------------- 133 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG--------CSS----------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc--------ccc----------------------
Confidence 9999999999999999999988664 34458999999999531 111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ .+.+..++..+++++++|||+++ .|++++|++|++.+...
T Consensus 134 ----~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 134 ----K--------PEKHLRFCQENGFSSHFVSAKTG------------DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp ----C--------HHHHHHHHHHHTCEEEEECTTTC------------TTHHHHHHHHHHHHTTC
T ss_pred ----C--------HHHHHHHHHHcCCcEEEEeCCCC------------CCHHHHHHHHHHHHHhh
Confidence 1 12267888889999999999999 99999999999987654
No 14
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=213.97 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=132.8
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ 121 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ 121 (289)
........+||+|+|++|||||||+++|+++.+...+.+|.+..+. ..+..++..+.+.+|||+|++.|..+ ..+++.
T Consensus 14 ~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~ 91 (187)
T 3c5c_A 14 LYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNW 91 (187)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTT
T ss_pred HHhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhh
Confidence 3344556799999999999999999999999988888888887663 34455667789999999999999875 578999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhc-----CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQ-----KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~-----~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
+|++|+|||++++.+|+.+..|+..+... ...|+++||||+|+... +.+
T Consensus 92 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--------~~v------------------ 145 (187)
T 3c5c_A 92 AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY--------RQV------------------ 145 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG--------CSS------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc--------Ccc------------------
Confidence 99999999999999999999999998765 35589999999999431 112
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeec-CCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACA-SNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa-~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+ .+.+.+++..++++|++||| +++ .||+++|+.|++.+.
T Consensus 146 --------~--------~~~~~~~~~~~~~~~~e~Sa~~~g------------~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 146 --------T--------KAEGVALAGRFGCLFFEVSACLDF------------EHVQHVFHEAVREAR 185 (187)
T ss_dssp --------C--------HHHHHHHHHHHTCEEEECCSSSCS------------HHHHHHHHHHHHHHH
T ss_pred --------C--------HHHHHHHHHHcCCcEEEEeecCcc------------ccHHHHHHHHHHHHh
Confidence 1 12277889999999999999 899 999999999998764
No 15
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=1.8e-29 Score=214.77 Aligned_cols=170 Identities=18% Similarity=0.301 Sum_probs=140.2
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
.....+.+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 34456679999999999999999999999998877778888777666666677778999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
|++|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... +.+
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~--------~~v---------------------- 144 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR--------RDV---------------------- 144 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--------CCS----------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc--------ccc----------------------
Confidence 99999999999999999999999987653 3499999999999532 111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. .+.+..++..++++|++|||+++ .|++++|.+|++.+....
T Consensus 145 ----~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 145 ----K--------REEGEAFAREHGLIFMETSAKTA------------CNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp ----C--------HHHHHHHHHHHTCEEEEECTTTC------------TTHHHHHHHHHHHHHHHH
T ss_pred ----C--------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHH
Confidence 1 12267888889999999999999 999999999999886543
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=2.8e-29 Score=209.01 Aligned_cols=166 Identities=18% Similarity=0.289 Sum_probs=141.1
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+|||||++.+..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34456899999999999999999999999887788888877766666667778899999999999999988899999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+++.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~------------------------ 138 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR--------DV------------------------ 138 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--------CS------------------------
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--------cc------------------------
Confidence 999999999999999999999887654 34999999999995321 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
. .+.+.+++..++++++++||+++ .|++++|++|++.+..
T Consensus 139 --~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 139 --T--------YEEAKQFAEENGLLFLEASAKTG------------ENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp --C--------HHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHHHHHHC-
T ss_pred --C--------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHhh
Confidence 1 12267888889999999999999 9999999999987754
No 17
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=218.84 Aligned_cols=169 Identities=17% Similarity=0.258 Sum_probs=134.6
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
.......+||+|+|++|||||||+++|.++.+...+.+|.+.++....+..++..+.+.+|||+|++.|..++..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 34456679999999999999999999999998877888888777666666677778999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
|++|+|||++++.+|+.+..|+..+.... ..|+++||||+|+... +.+
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~--------~~v---------------------- 152 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL--------REV---------------------- 152 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--------CCS----------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc--------ccc----------------------
Confidence 99999999999999999999999987754 3499999999999531 111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. .+.+.+++...++ +|++|||+++ .||+++|.+|++.+...
T Consensus 153 ----~--------~~~~~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 153 ----S--------LAEAQSLAEHYDILCAIETSAKDS------------SNVEEAFLRVATELIMR 194 (201)
T ss_dssp ----C--------HHHHHHHHHHTTCSEEEECBTTTT------------BSHHHHHHHHHHHHHHH
T ss_pred ----C--------HHHHHHHHHHcCCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHh
Confidence 1 1226788889999 9999999999 99999999999988654
No 18
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=4.8e-29 Score=205.63 Aligned_cols=164 Identities=18% Similarity=0.319 Sum_probs=139.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 47999999999999999999999998877888888877666666677788999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
||++++.+|+.+..|+..+.... ..|+++|+||+|+..... .++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~----------------------------- 128 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGG-----ERK----------------------------- 128 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-----CCC-----------------------------
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc-----ccC-----------------------------
Confidence 99999999999999999887664 349999999999964210 011
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
...+.+..++..++++|+++||+++ .|++++|++|.+.+.
T Consensus 129 -----v~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 129 -----VAREEGEKLAEEKGLLFFETSAKTG------------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp -----SCHHHHHHHHHHHTCEEEECCTTTC------------TTHHHHHHHHHTTSC
T ss_pred -----CCHHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHh
Confidence 1122367888889999999999999 999999999998664
No 19
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=6.5e-29 Score=213.50 Aligned_cols=167 Identities=20% Similarity=0.327 Sum_probs=143.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 34568999999999999999999999998888888888887766666677788999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.......
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-------------------------------- 132 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE-------------------------------- 132 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--------------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--------------------------------
Confidence 99999999999999999999987654 34999999999996422111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
...+..++..++++++++||++| .|++++|.+|.+.+....
T Consensus 133 ----------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 133 ----------YDVAKEFADANKMPFLETSALDS------------TNVEDAFLTMARQIKESM 173 (206)
T ss_dssp ----------HHHHHHHHHHTTCCEEECCTTTC------------TTHHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHHH
Confidence 11267788889999999999999 999999999999886554
No 20
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=4.5e-29 Score=211.73 Aligned_cols=167 Identities=17% Similarity=0.267 Sum_probs=142.9
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
..+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+|||+|++.|..++..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34556899999999999999999999999887788888887766666667778899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--------~~------------------------ 145 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER--------VV------------------------ 145 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--------CS------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc--------CC------------------------
Confidence 999999999999999999999987764 44999999999995321 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. .+.+..++..++++++++||+++ .|++++|++|++.+...
T Consensus 146 --~--------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 146 --P--------AEDGRRLADDLGFEFFEASAKEN------------INVKQVFERLVDVICEK 186 (189)
T ss_dssp --C--------HHHHHHHHHHHTCEEEECBTTTT------------BSHHHHHHHHHHHHHHH
T ss_pred --C--------HHHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHHHHH
Confidence 0 12267888889999999999999 99999999999887543
No 21
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=5e-29 Score=213.43 Aligned_cols=167 Identities=20% Similarity=0.289 Sum_probs=143.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
.+..+||+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.|..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 34568999999999999999999999998878888888887766776677788999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.......
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-------------------------------- 132 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS-------------------------------- 132 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC--------------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccC--------------------------------
Confidence 99999999999999999999987764 34999999999996422111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
...+..++..++++|++|||+++ .|++++|.+|.+.+...+
T Consensus 133 ----------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 133 ----------SERGRQLADHLGFEFFEASAKDN------------INVKQTFERLVDVICEKM 173 (203)
T ss_dssp ----------HHHHHHHHHHHTCEEEECBTTTT------------BSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHCCCeEEEEECCCC------------CCHHHHHHHHHHHHHHHH
Confidence 12267888888999999999999 999999999999887654
No 22
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=213.36 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=144.0
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ 121 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ 121 (289)
........+||+|+|++|||||||+++|.+..+...+.++.+..+....+...+..+.+.+|||||++.|..++..+++.
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 34445667999999999999999999999999887888888888776666667778899999999999999999999999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
+|++|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+..... +
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~--------~--------------------- 148 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE--------V--------------------- 148 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCC--------S---------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccc--------c---------------------
Confidence 999999999999999999999999987653 349999999999953211 1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. ...+..++...+++|++|||+++ .|++++|.+|.+.+....
T Consensus 149 -----~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 149 -----P--------TEEARMFAENNGLLFLETSALDS------------TNVELAFETVLKEIFAKV 190 (193)
T ss_dssp -----C--------HHHHHHHHHHTTCEEEEECTTTC------------TTHHHHHHHHHHHHHHHH
T ss_pred -----C--------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHh
Confidence 0 12267888889999999999999 999999999999886543
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=5.1e-29 Score=205.81 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=134.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999999887788888877766677777778899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||++++.+|+.+..|+..+.... ..|+++|+||+|+... ...
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~---------------------------------- 126 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVT---------------------------------- 126 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-CSC----------------------------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC-ccC----------------------------------
Confidence 999999999999999999887764 3499999999999321 100
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+.+..++..++++++++||+++ .|++++|.+|.+.+...
T Consensus 127 --------~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 127 --------ADQGEALAKELGIPFIESSAKND------------DNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp --------HHHHHHHHHHHTCCEEECBTTTT------------BSHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHHHHH
Confidence 11267888888999999999999 99999999999887654
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=5.2e-29 Score=209.44 Aligned_cols=164 Identities=20% Similarity=0.198 Sum_probs=139.1
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
...+.+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.|..+...+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345679999999999999999999999998888888888776 4455566777889999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|||++++.+|+.+..|+..+... ...|+++|+||+|+.....+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v------------------------------- 141 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV------------------------------- 141 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS-------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCc-------------------------------
Confidence 99999999999999999999888553 33489999999999642211
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecC-CCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACAS-NVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~-~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
. .+.+..++..++++|++|||+ ++ .|++++|+.|++.+.
T Consensus 142 ---~--------~~~~~~~~~~~~~~~~~~Sa~~~~------------~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 142 ---T--------RDQGKEMATKYNIPYIETSAKDPP------------LNVDKTFHDLVRVIR 181 (183)
T ss_dssp ---C--------HHHHHHHHHHHTCCEEEEBCSSSC------------BSHHHHHHHHHHHHH
T ss_pred ---C--------HHHHHHHHHHhCCeEEEeccCCCC------------CCHHHHHHHHHHHHh
Confidence 1 122788899999999999999 99 999999999998764
No 25
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=5.4e-29 Score=207.33 Aligned_cols=164 Identities=18% Similarity=0.320 Sum_probs=139.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|+++.+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 44589999999999999999999999988888888888877777777777789999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--------~~-------------------------- 137 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--------QV-------------------------- 137 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC--------CS--------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC--------cC--------------------------
Confidence 9999999999999999999886653 44899999999995321 11
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
. .+.+..++...+++++++||+++ .|++++|++|.+.+..
T Consensus 138 ~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 138 S--------TEEGERKAKELNVMFIETSAKAG------------YNVKQLFRRVAAALPG 177 (179)
T ss_dssp C--------HHHHHHHHHHHTCEEEEEBTTTT------------BSHHHHHHHHHHTCC-
T ss_pred C--------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHhh
Confidence 0 12267788888999999999999 9999999999987654
No 26
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1.3e-28 Score=208.28 Aligned_cols=164 Identities=17% Similarity=0.344 Sum_probs=139.5
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcce----------------------------
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYT---------------------------- 97 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~---------------------------- 97 (289)
..+.+||+|+|++|||||||+++|++..+...+.+|.+..+....+...+..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999999888888888887776666665544
Q ss_pred ---------EEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCC
Q 040295 98 ---------ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 98 ---------~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~ 168 (289)
+.+.+|||||++.|..+...+++.+|++|+|||++++.+|+.+..|+..+......|+++|+||+|+ ...
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~-~~~ 162 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK-NKF 162 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC-C-C
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc-ccc
Confidence 7899999999999999999999999999999999999999999999999987766899999999993 211
Q ss_pred CchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCc
Q 040295 169 PVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDS 248 (289)
Q Consensus 169 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~ 248 (289)
. + . .+.+..++..++++++++||+++
T Consensus 163 ~--------~--------------------------~--------~~~~~~~~~~~~~~~~~~Sa~~~------------ 188 (208)
T 3clv_A 163 Q--------V--------------------------D--------ILEVQKYAQDNNLLFIQTSAKTG------------ 188 (208)
T ss_dssp C--------S--------------------------C--------HHHHHHHHHHTTCEEEEECTTTC------------
T ss_pred c--------C--------------------------C--------HHHHHHHHHHcCCcEEEEecCCC------------
Confidence 1 1 0 12267888889999999999999
Q ss_pred hhHHHHHHHHHHhccc
Q 040295 249 QGVERLYGALSAHMWP 264 (289)
Q Consensus 249 ~~i~~l~~~L~~~~~~ 264 (289)
.|++++|++|.+.+..
T Consensus 189 ~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 189 TNIKNIFYMLAEEIYK 204 (208)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 27
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.4e-30 Score=218.60 Aligned_cols=171 Identities=17% Similarity=0.267 Sum_probs=145.0
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ 121 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ 121 (289)
.+......+||+|+|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+|||+|++.|..+...+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 34455677999999999999999999999999887777777777766666666677899999999999999999999999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
+|++|+|||++++.+|+.+..|+..+.... ..|+++||||+|+.... .+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--------~~--------------------- 146 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER--------VV--------------------- 146 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--------CS---------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--------cc---------------------
Confidence 999999999999999999999999997764 34999999999995321 11
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. ...+..++..++++|++|||++| .|++++|++|++.+...+
T Consensus 147 -----~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 147 -----P--------TEKGQLLAEQLGFDFFEASAKEN------------ISVRQAFERLVDAICDKM 188 (191)
T ss_dssp -----C--------HHHHHHHHHHHTCEEEECBTTTT------------BSHHHHHHHHHHHHHHHC
T ss_pred -----C--------HHHHHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHHHHhc
Confidence 1 12267888999999999999999 999999999999886553
No 28
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=7.8e-29 Score=211.06 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=141.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.++.+...+.+|.+..+.. .+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 3456899999999999999999999999888888888877653 445566778899999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHH-HHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDAL-KHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l-~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+ ..|+..+..... .|+++||||+|+.... .+.+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------~~~~------------------------- 147 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG------SDDV------------------------- 147 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT------TTCC-------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC------CCcc-------------------------
Confidence 999999999999997 689988876644 4999999999996421 1111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCe-EEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIE-YIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~-~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
..+.+..++..+++. |++|||++| .||+++|++|++.+....
T Consensus 148 ---------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 148 ---------TKQEGDDLCQKLGCVAYIEASSVAK------------IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp ---------CHHHHHHHHHHHTCSCEEECBTTTT------------BSHHHHHHHHHHHHHCSC
T ss_pred ---------cHHHHHHHHHhcCCCEEEEeecCCC------------CCHHHHHHHHHHHHHhcC
Confidence 122378899999997 999999999 999999999999887653
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.9e-29 Score=211.24 Aligned_cols=167 Identities=20% Similarity=0.285 Sum_probs=142.1
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
...+.+||+|+|++|||||||+++|.++.+...+.++.+..+....+...+..+.+.+|||||++.|..+...+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34556999999999999999999999999887888899988877777777778899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... +.+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~--------~~v------------------------ 146 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI--------REV------------------------ 146 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--------CCS------------------------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc--------ccc------------------------
Confidence 999999999999999999999997764 3499999999999531 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. .+.+.+++...+++|++|||+++ .|++++|++|.+.+...
T Consensus 147 --~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 147 --P--------LKDAKEYAESIGAIVVETSAKNA------------INIEELFQGISRQIPPL 187 (192)
T ss_dssp --C--------HHHHHHHHHTTTCEEEECBTTTT------------BSHHHHHHHHHHTCC--
T ss_pred --C--------HHHHHHHHHHcCCEEEEEeCCCC------------cCHHHHHHHHHHHHHhh
Confidence 1 12267888889999999999999 99999999999977543
No 30
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.9e-29 Score=209.38 Aligned_cols=169 Identities=22% Similarity=0.332 Sum_probs=144.6
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
...+.+||+|+|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.|..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34456899999999999999999999999888888888888776677667778899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... +
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~---------~----------------------- 138 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE---------V----------------------- 138 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC---------S-----------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc---------c-----------------------
Confidence 999999999999999999999987653 34999999999994211 1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
..+.+..++..++++|+++||+++ .|++++|++|.+.+.....+
T Consensus 139 -----------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~~~~ 182 (195)
T 1x3s_A 139 -----------DRNEGLKFARKHSMLFIEASAKTC------------DGVQCAFEELVEKIIQTPGL 182 (195)
T ss_dssp -----------CHHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHHHHHHHTSGGG
T ss_pred -----------CHHHHHHHHHHcCCEEEEecCCCC------------CCHHHHHHHHHHHHHhhhhh
Confidence 012267888889999999999999 99999999999988766543
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-28 Score=205.17 Aligned_cols=166 Identities=18% Similarity=0.296 Sum_probs=132.5
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
....+||+|+|++|||||||+++|.+..+. ..+.+|.+..+....+..++..+.+.+|||||++.|..++..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 345689999999999999999999999885 4567888888776666667778899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.......
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~------------------------------- 135 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK------------------------------- 135 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC-------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccC-------------------------------
Confidence 999999999999999999999887654 34999999999996422111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+.+..++..++++++++||+++ .|++++|++|.+.+...
T Consensus 136 -----------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 136 -----------REDGEKLAKEYGLPFMETSAKTG------------LNVDLAFTAIAKELKRR 175 (180)
T ss_dssp -----------HHHHHHHHHHHTCCEEECCTTTC------------TTHHHHHHHHHHHHHC-
T ss_pred -----------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHH
Confidence 12267788888999999999999 99999999999877543
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=4.1e-29 Score=206.01 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=139.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+|+|++|||||||+++|.++.+...+.+|.+.++....+...+..+.+.+|||||++.+..+...+++.+|++|+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999999888888888877776777667777899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+ .
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~--------~~--------------------------~- 128 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS--------CI--------------------------K- 128 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC--------SS--------------------------C-
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc--------cc--------------------------C-
Confidence 999999999999999999886653 44899999999995321 11 0
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.+.+..++..++++++++||+++ .|++++|++|.+.++.
T Consensus 129 -------~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 129 -------NEEAEGLAKRLKLRFYRTSVKED------------LNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp -------HHHHHHHHHHHTCEEEECBTTTT------------BSSHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHcCCeEEEEecCCC------------CCHHHHHHHHHHHHhh
Confidence 12267888889999999999999 9999999999987753
No 33
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.6e-29 Score=216.63 Aligned_cols=171 Identities=19% Similarity=0.307 Sum_probs=136.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.|..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 34568999999999999999999999998877888888777766666677778999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... +.+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~--------~~v------------------------- 136 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL--------RAV------------------------- 136 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG--------CCS-------------------------
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--------ccc-------------------------
Confidence 99999999999999999999987763 3499999999999531 111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccccc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKS 270 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~ 270 (289)
. ...+..++..++++|+++||+++ .||+++|++|++.+......++
T Consensus 137 -~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 137 -P--------TEESKTFAQENQLLFTETSALNS------------ENVDKAFEELINTIYQKVSKHQ 182 (223)
T ss_dssp -C--------HHHHHHHHHHTTCEEEECCCC-C------------CCHHHHHHHHHHHHTTCC----
T ss_pred -C--------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHhhhcc
Confidence 1 12267888889999999999999 9999999999999987665443
No 34
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=9.6e-29 Score=212.17 Aligned_cols=167 Identities=15% Similarity=0.212 Sum_probs=136.7
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+...+..+.+.+|||||++.|..++..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345679999999999999999999999999888888888776 4455555667889999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++||||+|+.+.. .+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~v----------------------- 147 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPER--------EV----------------------- 147 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGC--------CS-----------------------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccc--------cc-----------------------
Confidence 999999999999999999999987652 34899999999995321 11
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. ...+..++..++++|+++||++| .|++++|.+|.+.+....
T Consensus 148 ---~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 148 ---Q--------AVEGKKLAESWGATFMESSAREN------------QLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp ---C--------HHHHHHHHHHHTCEEEECCTTCH------------HHHHHHHHHHHHHHHHC-
T ss_pred ---C--------HHHHHHHHHHhCCeEEEEeCCCC------------CCHHHHHHHHHHHHHhhh
Confidence 1 12267888999999999999999 999999999999886654
No 35
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=214.85 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=131.9
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc-cccccccC
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI-RSLPISDQ 121 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~-~~~~~~~~ 121 (289)
+......+||+|+|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+|||+|++.+.. +...+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 34455679999999999999999999976544333334444445555556677788999999999988764 66778899
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
++++|+|||++++.+|+.+..|+..+.... ..|+++||||+|+..... +
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------v-------------------- 148 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE--------V-------------------- 148 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC--------S--------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCC--------c--------------------
Confidence 999999999999999999999999987653 348999999999964221 1
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ .+.+..++..++++|+||||+++ .|++++|++|++.+...
T Consensus 149 ------~--------~~~~~~~a~~~~~~~~e~Sa~~~------------~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 149 ------S--------LEEGRHLAGTLSCKHIETSAALH------------HNTRELFEGAVRQIRLR 189 (195)
T ss_dssp ------C--------HHHHHHHHHHTTCEEEEEBTTTT------------BSHHHHHHHHHHHHHTT
T ss_pred ------C--------HHHHHHHHHHhCCEEEEEcCCCC------------CCHHHHHHHHHHHHHHh
Confidence 1 11267888888999999999999 99999999999887543
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=1.8e-28 Score=207.48 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=137.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+..++..+.+.+|||||++.|..++..+++.+|++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 34589999999999999999999999988778888876653 34555667789999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHH-HHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDAL-KHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l-~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+ ..|+..+.... ..|+++||||+|+.... .....+.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~----~~~~~~~------------------------- 134 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV----STLVELS------------------------- 134 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH----HHHHHHH-------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch----hhHhhhh-------------------------
Confidence 99999999999999 68998887654 34999999999996321 0001110
Q ss_pred CCCCCcHHHHHHHHHHHHHcC-CeEEEeecC-CCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHR-IEYIEACAS-NVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~-~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.........+.+..++..++ ++|++|||+ ++ .|++++|..|++.++.
T Consensus 135 -~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~------------~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 135 -NHRQTPVSYDQGANMAKQIGAATYIECSALQSE------------NSVRDIFHVATLACVN 183 (184)
T ss_dssp -TTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBH------------HHHHHHHHHHHHHHHT
T ss_pred -hcccCCCCHHHHHHHHHHcCCcEEEEeeecCCC------------cCHHHHHHHHHHHHhc
Confidence 00000011233788898888 689999999 68 8999999999988764
No 37
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=214.40 Aligned_cols=167 Identities=18% Similarity=0.301 Sum_probs=132.7
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45568999999999999999999999998877888888777666776677778999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... +.+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~v------------------------- 148 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE--------REV------------------------- 148 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG--------CCS-------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc--------ccc-------------------------
Confidence 99999999999999999999887653 3499999999999532 111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
+ ..++..++...+++|++|||++| .|++++|.+|++.+....
T Consensus 149 -~--------~~~~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 149 -T--------FLEASRFAQENELMFLETSALTG------------ENVEEAFLKCARTILNKI 190 (200)
T ss_dssp -C--------HHHHHHHHHHTTCEEEEECTTTC------------TTHHHHHHHHHHHHHHHH
T ss_pred -C--------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHH
Confidence 1 12267888889999999999999 999999999999887654
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=6.9e-29 Score=205.48 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=121.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc-cccccccCccEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI-RSLPISDQLTALVM 127 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~-~~~~~~~~ad~vIl 127 (289)
.+||+|+|++|||||||+++|.+..+...+..+.+..+....+..++..+.+.+|||+|++.+.. +...+++.+|++|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 37999999999999999999998877665555555666666666777788999999999998876 66677889999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++++|+.+..|+..+.... ..|+++||||+|+.... .+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~-------------------------- 127 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR--------EV-------------------------- 127 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGC--------CS--------------------------
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcc--------cC--------------------------
Confidence 999999999999999999987664 34999999999995321 11
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
. ...+..++..++++|++|||+++ .|++++|++|++.+..
T Consensus 128 ~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 128 S--------LEEGRHLAGTLSCKHIETSAALH------------HNTRELFEGAVRQIRL 167 (169)
T ss_dssp C--------HHHHHHHHHHTTCEEEECBTTTT------------BSHHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHcCCcEEEecCccC------------CCHHHHHHHHHHHHHh
Confidence 1 12277889999999999999999 9999999999987654
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=1.1e-28 Score=205.74 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=138.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.+..+...+.+|.+..+. ..+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 345689999999999999999999999988888888887765 4455566678899999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|||++++.+|+.+..|+..+... ...|+++|+||+|+.... .+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~v------------------------ 132 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR--------QV------------------------ 132 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC--------CS------------------------
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cc------------------------
Confidence 9999999999999999999888332 234899999999995321 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. ...+..++..++++|+++||++| .|++++|++|.+.+...
T Consensus 133 --~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 133 --P--------RSEASAFGASHHVAYFEASAKLR------------LNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp --C--------HHHHHHHHHHTTCEEEECBTTTT------------BSHHHHHHHHHHHHHHH
T ss_pred --C--------HHHHHHHHHHcCCeEEEecCCCC------------CCHHHHHHHHHHHHHHh
Confidence 1 12267888888999999999999 99999999999988654
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-28 Score=208.17 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=139.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||+|+++|..++..+++.+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3568999999999999999999999998877888887665 334556666789999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+. .|+..+.... ..|+++||||+|+.... .....+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~-------------------------- 144 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP----KTLARL-------------------------- 144 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH----HHHHHH--------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc----cchhhc--------------------------
Confidence 999999999999998 8999887763 34899999999996531 111111
Q ss_pred CCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
............+..++..+++ +|++|||++| .|++++|++|++.++.
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 145 NDMKEKPICVEQGQKLAKEIGACCYVECSALTQ------------KGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTC------------TTHHHHHHHHHHHHHC
T ss_pred ccccCcccCHHHHHHHHHHcCCcEEEEeeCCCC------------CCHHHHHHHHHHHHhc
Confidence 0000000112347889998998 8999999999 9999999999987764
No 41
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=1.5e-28 Score=209.05 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=133.4
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
....+.+||+|+|++|||||||+++|+++.+...+.+|.+ .+ ...+..++..+.+.+|||+|++.|. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3455679999999999999999999999999877777744 33 3556667778899999999999886 778899
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 124 ALVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 124 ~vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
++|+|||++++.+|+.+..|+..+.... ..|+++||||+|+.... .+.+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------~~~v---------------------- 139 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN------PRVI---------------------- 139 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB------CCCS----------------------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------cccc----------------------
Confidence 9999999999999999999999997764 33999999999995311 0111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ .+.+.+++..++ ++|++|||++| .||+++|.+|++.+...
T Consensus 140 ----~--------~~~~~~~~~~~~~~~~~e~Sa~~~------------~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 140 ----D--------DSRARKLSTDLKRCTYYETCATYG------------LNVERVFQDVAQKVVAL 181 (184)
T ss_dssp ----C--------HHHHHHHHHHTTTCEEEEEBTTTT------------BTHHHHHHHHHHHHHHH
T ss_pred ----C--------HHHHHHHHHHcCCCeEEEecCCCC------------CCHHHHHHHHHHHHHHH
Confidence 1 123788999887 89999999999 99999999999987654
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=204.15 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=124.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh--hhccccccccCccEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE--FSIRSLPISDQLTAL 125 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~--~~~~~~~~~~~ad~v 125 (289)
+.+||+|+|++|||||||+++|.+..+...+ ++.+.++....+..++..+.+.+|||+|++. +..+...+++.++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4589999999999999999999998876544 3455555555566667778899999999987 566667788999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|||++++.+|+.+..|+..+.... ..|+++||||+|+.....+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~------------------------------- 130 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVS------------------------------- 130 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSC-------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccC-------------------------------
Confidence 99999999999999999999887652 34899999999996432111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
...+..++..++++|++|||++| .|++++|++|++.+...
T Consensus 131 -----------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 131 -----------VEEGRACAVVFDCKFIETSATLQ------------HNVAELFEGVVRQLRLR 170 (175)
T ss_dssp -----------HHHHHHHHHHHTSEEEECBTTTT------------BSHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHcCCeEEEEecCCC------------CCHHHHHHHHHHHHHHh
Confidence 11266788888999999999999 99999999999887543
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=7.4e-29 Score=214.06 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=138.5
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 34569999999999999999999999998877888887665 33455666778999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+. .|+..+.... ..|+++||||+|+... +.+..
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~----------------------- 133 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD--------KGYLA----------------------- 133 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC--------HHHHH-----------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC--------ccccc-----------------------
Confidence 9999999999999997 8999987764 3489999999999532 11100
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~ 269 (289)
. .........+..++..+++ +|++|||+++ .|++++|++|++.+......+
T Consensus 134 -~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 134 -D--HTNVITSTQGEELRKQIGAAAYIECSSKTQ------------QNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp -T--CSSCCCHHHHHHHHHHHTCSEEEECCTTTC------------TTHHHHHHHHHHHHHCC----
T ss_pred -c--ccCCCCHHHHHHHHHHcCCceEEEccCCCC------------CCHHHHHHHHHHHHhhhhhhc
Confidence 0 0000112337788888896 8999999999 999999999999887665433
No 44
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=2.4e-28 Score=201.66 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=112.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.+..+. ...++.+..+ ...+...+..+.+.+|||+|++.|..+...+++.++++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999977654 3334455444 34445567788999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++.+|+.+..|+..+.... ..|+++||||+|+.+.....
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---------------------------------- 125 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS---------------------------------- 125 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSC----------------------------------
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccC----------------------------------
Confidence 99999999999999999887652 34999999999996432111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
...+..++..++++|++|||++| .|++++|++|.+.+..
T Consensus 126 --------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 126 --------VDEGRACAVVFDCKFIETSAALH------------HNVQALFEGVVRQIRL 164 (166)
T ss_dssp --------HHHHHHHHHHTTCEEEECBGGGT------------BSHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhCCcEEEeccCCC------------CCHHHHHHHHHHHHHh
Confidence 12267888889999999999999 9999999999987653
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=3.6e-28 Score=202.63 Aligned_cols=163 Identities=15% Similarity=0.314 Sum_probs=135.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 45899999999999999999999999888888888888777777777777899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
|||++++.+|+.+..|+..+... ...|+++|+||+|+... ...
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~------------------------------ 134 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-QVS------------------------------ 134 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-SSC------------------------------
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc-ccC------------------------------
Confidence 99999999999999999988654 23489999999999521 110
Q ss_pred CCCCCCCCcHHHHHHHHHHHH-HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 202 SLLGDEEPSWEIRRSCLEWCT-EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
...+..++. ..+++++++||+++ .|++++|++|++.++..
T Consensus 135 ------------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 135 ------------TEEAQAWCRDNGDYPYFETSAKDA------------TNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp ------------HHHHHHHHHHTTCCCEEECCTTTC------------TTHHHHHHHHHHHHHTC
T ss_pred ------------HHHHHHHHHhcCCceEEEEeCCCC------------CCHHHHHHHHHHHHHhh
Confidence 112567777 55689999999999 99999999999987653
No 46
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=2.5e-28 Score=204.30 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=127.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
.+.+||+++|++|||||||+++|.++.+.. +.+|.+..+ ...+..++..+.+.+|||+|++++ .+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCchh-----HHHHhCCEEE
Confidence 456899999999999999999999999876 677777554 345555667789999999999873 5778899999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc-----CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ-----KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~-----~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|||++++.+|+.+..|+..+... ...|+++||||+|+.... .+.+
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------~~~v----------------------- 128 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS------PRVV----------------------- 128 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB------CCCS-----------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------cCcC-----------------------
Confidence 999999999999999977665443 234999999999994211 0111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHc-CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEH-RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
+ .+.+..++... +++|++|||++| .|++++|++|++.+....
T Consensus 129 ---~--------~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 129 ---G--------DARARALXADMKRCSYYETXATYG------------LNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp ---C--------HHHHHHHHHHHSSEEEEEEBTTTT------------BTHHHHHHHHHHHHHHHH
T ss_pred ---C--------HHHHHHHHHhhcCCeEEEEecccc------------CCHHHHHHHHHHHHHHHH
Confidence 1 12267787776 689999999999 999999999999886543
No 47
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=2.2e-28 Score=206.02 Aligned_cols=167 Identities=17% Similarity=0.259 Sum_probs=140.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEe-eEEeecCcc---------eEEEEEEEcCCchhhhccc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVN-GWTINTKYY---------TADVSLWMAHLHEEFSIRS 115 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~-~~~i~~~~~---------~~~l~I~Dt~G~e~~~~~~ 115 (289)
....+||+|+|++|||||||+++|.++.+...+.+|.+.++. ...+...+. .+.+.+|||||++.|....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 455689999999999999999999999988888888888776 445554444 6889999999999999999
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
..+++.+|++|+|||++++.+++.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~-------------- 145 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR--------AV-------------- 145 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC--------CS--------------
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cc--------------
Confidence 999999999999999999999999999999987654 34899999999995321 11
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. .+.+..++..++++++++||+++ .|++++|++|.+.+....
T Consensus 146 ------------~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 146 ------------K--------EEEARELAEKYGIPYFETSAANG------------TNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp ------------C--------HHHHHHHHHHHTCCEEECCTTTC------------TTHHHHHHHHHHHHHHHH
T ss_pred ------------C--------HHHHHHHHHHcCCCEEEEECCCC------------CCHHHHHHHHHHHHHHHh
Confidence 0 12267888888999999999999 999999999999886543
No 48
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=9.8e-29 Score=211.82 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=131.2
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
+......+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.|..++..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 44556679999999999999999999999998777778888777666666677778899999999999999888999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
|++|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.. ....
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~--------~~~~---------------------- 151 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD--------TAAT---------------------- 151 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH--------HHHH----------------------
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc--------cccc----------------------
Confidence 99999999999999999999999887654 348999999999942 1110
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.. ......+.+..++...+++|++|||+++ .||+++|.+|++.+..
T Consensus 152 ----~~--~~~v~~~~~~~~~~~~~~~~~~~SA~~g------------~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 152 ----EG--QKCVPGHFGEKLAMTYGALFCETSAKDG------------SNIVEAVLHLAREVKK 197 (199)
T ss_dssp ----TT--CCCCCHHHHHHHHHHHTCEEEECCTTTC------------TTHHHHHHHHHHHHTC
T ss_pred ----cc--ccccCHHHHHHHHHHcCCeEEEeeCCCC------------CCHHHHHHHHHHHHHh
Confidence 00 0001123377888889999999999999 9999999999987754
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=210.86 Aligned_cols=167 Identities=20% Similarity=0.340 Sum_probs=133.9
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34556899999999999999999999999887788888888776677667777899999999999999988899999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~--------~v------------------------ 149 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR--------EI------------------------ 149 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--------CS------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--------cc------------------------
Confidence 999999999999999999999887764 34999999999995321 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHc-CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEH-RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~-~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. .+.+..++... ++++++|||++| .|++++|++|++.+..+
T Consensus 150 --~--------~~~~~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 150 --T--------RQQGEKFAQQITGMRFCEASAKDN------------FNVDEIFLKLVDDILKK 191 (192)
T ss_dssp --C--------HHHHHHHHHTSTTCEEEECBTTTT------------BSHHHHHHHHHHHHHHT
T ss_pred --C--------HHHHHHHHHhcCCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHh
Confidence 1 11266777774 789999999999 99999999999877543
No 50
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=2.6e-28 Score=200.93 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=134.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.++.+...+.+|.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999988788888876653 4455566678899999999999999888999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++.+|+.+..|+..+... ...|+++|+||+|+.... .+ .
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~--------------------------~ 127 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER--------VV--------------------------G 127 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC--------CS--------------------------C
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccc--------cC--------------------------C
Confidence 9999999999999999888654 244899999999995321 11 1
Q ss_pred CCCCcHHHHHHHHHHHHHc-CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 206 DEEPSWEIRRSCLEWCTEH-RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~-~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+.+..++..+ +++|+++||++| .|++++|++|.+.+.
T Consensus 128 --------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 128 --------KEQGQNLARQWCNCAFLESSAKSK------------INVNEIFYDLVRQIN 166 (167)
T ss_dssp --------HHHHHHHHHHTTSCEEEECBTTTT------------BSHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHccCCcEEEecCCCC------------CCHHHHHHHHHHHHh
Confidence 12267788877 789999999999 999999999998763
No 51
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=3.9e-28 Score=210.58 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=137.7
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.+..+...+.+|.+..+ ...+..++..+.+.+|||+|++.|..+...+++.++++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45568999999999999999999999999877888887766 34556667788999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHH-HHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDAL-KHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l-~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+ ..|+..+.... ..|+++||||+|+.... ....++.
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~----~~~~~~~------------------------ 155 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV----STLVELS------------------------ 155 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH----HHHHHHH------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccch----hhhhhhc------------------------
Confidence 999999999999999 78999887654 34999999999996321 0011110
Q ss_pred CCCCCCcHHHHHHHHHHHHHcC-CeEEEeecC-CCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHR-IEYIEACAS-NVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~-~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.........+.+..++..++ ++|++|||+ ++ .||+++|..|++.++
T Consensus 156 --~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~------------~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 156 --NHRQTPVSYDQGANMAKQIGAATYIECSALQSE------------NSVRDIFHVATLACV 203 (205)
T ss_dssp --TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCH------------HHHHHHHHHHHHHHH
T ss_pred --ccccCCCCHHHHHHHHHHcCCCEEEEeeeccCC------------cCHHHHHHHHHHHHh
Confidence 00000011233788888887 689999999 68 899999999998765
No 52
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-28 Score=214.23 Aligned_cols=166 Identities=15% Similarity=0.132 Sum_probs=129.3
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh-hhccccccccC
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNF--EDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE-FSIRSLPISDQ 121 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~-~~~~~~~~~~~ 121 (289)
.....+||+|+|++|||||||+++|.+... ...+ ++++.+++...+..++..+.+.+|||+|++. +..+...|++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 445569999999999999999999996543 3333 3455555555666677788899999999887 55666788899
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
++++|+|||++++.+|+.+..|+..+... ...|+|+||||+|+... +.+
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~--------r~v-------------------- 163 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC--------REV-------------------- 163 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG--------CCS--------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC--------ceE--------------------
Confidence 99999999999999999999999887653 34599999999999531 212
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.. ..+..++..++++|+||||++| .||+++|++|++.+...
T Consensus 164 ------~~--------~e~~~~a~~~~~~~~e~SAk~g------------~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 164 ------SV--------SEGRACAVVFDCKFIETSAAVQ------------HNVKELFEGIVRQVRLR 204 (211)
T ss_dssp ------CH--------HHHHHHHHHHTCEEEECBTTTT------------BSHHHHHHHHHHHHHHH
T ss_pred ------eH--------HHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHh
Confidence 11 1266788888999999999999 99999999999987543
No 53
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=208.54 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=131.9
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
.......+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||+|++.|..++..+++++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34556779999999999999999999999998877888887655 34455566778899999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
|++|+|||++++.+|+.+. .|+..+.... ..|+++||||+|+..... ....+.
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~--------------------- 147 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK----VLIELD--------------------- 147 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHH----HHHHHH---------------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchh----hhhhhc---------------------
Confidence 9999999999999999997 7999887654 348999999999964210 001110
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.........+.+..++..+++ +|++|||+++ .|++++|++|++.++..
T Consensus 148 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 148 -----KCKEKPVPEEAAKLLAEEIKAASYIECSALTQ------------KNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp -----TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTC------------TTHHHHHHHHHHHHHHH
T ss_pred -----ccccccCCHHHHHHHHHhcCCcEEEEEecCCC------------CCHHHHHHHHHHHHhcc
Confidence 000000112347888888887 8999999999 99999999999887644
No 54
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=2.2e-28 Score=205.10 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=138.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+...+..+.+.+|||||++.|..++..+++.+|++|+|
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 83 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence 48999999999999999999999998877777777655 33445566778899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 129 FNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 129 ~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
||++++.+|+.+. .|+..+.... ..|+++|+||+|+.+... ....+.. . .
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~---~--------------------~- 135 (186)
T 1mh1_A 84 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD----TIEKLKE---K--------------------K- 135 (186)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH----HHHHHHH---T--------------------T-
T ss_pred EECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch----hhhhhcc---c--------------------c-
Confidence 9999999999998 7998887653 348999999999964311 0011100 0 0
Q ss_pred CCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 207 EEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
......+.+..++..+++ +|++|||++| .|++++|++|.+.++...
T Consensus 136 --~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 136 --LTPITYPQGLAMAKEIGAVKYLECSALTQ------------RGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp --CCCCCHHHHHHHHHHTTCSEEEECCTTTC------------TTHHHHHHHHHHHHSCCC
T ss_pred --cccCCHHHHHHHHHhcCCcEEEEecCCCc------------cCHHHHHHHHHHHHhccc
Confidence 000112337788988997 9999999999 999999999999887654
No 55
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=9.7e-29 Score=214.06 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=141.4
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcc----------eEEEEEEEcCCchhhh
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYY----------TADVSLWMAHLHEEFS 112 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~----------~~~l~I~Dt~G~e~~~ 112 (289)
.......+||+|+|++|||||||+++|++..+...+.+|.+.++....+...+. .+.+.+|||+|++.|.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 344566799999999999999999999999987777777777765555544443 6789999999999999
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
.++..+++.+|++|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--------~v----------- 159 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR--------EV----------- 159 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC--------CS-----------
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc--------cc-----------
Confidence 999899999999999999999999999999999887653 34999999999995321 11
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCccc
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVL 268 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~ 268 (289)
. ...+..++..++++|++|||+++ .|++++|++|.+.+...+..
T Consensus 160 ---------------~--------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 160 ---------------N--------ERQARELADKYGIPYFETSAATG------------QNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp ---------------C--------HHHHHHHHHHTTCCEEEEBTTTT------------BTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------C--------HHHHHHHHHHCCCcEEEEECCCC------------CCHHHHHHHHHHHHHHHhhc
Confidence 1 12377888899999999999999 99999999999988765543
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=8.3e-29 Score=206.70 Aligned_cols=167 Identities=16% Similarity=0.277 Sum_probs=124.7
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC-cceEEEEEEEcCCchhhhccccccccCccE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK-YYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
....+||+|+|++|||||||+++|.+..+...+.++.+.++....+... +..+.+.+|||||++.|...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3456899999999999999999999999887888888777666666555 556889999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhc------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQ------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
+|+|||++++.+|+.+..|+..+... ...|+++|+||+|+... .+.+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------~~~v-------------------- 137 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-------KKIV-------------------- 137 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-------GCCS--------------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc-------cccC--------------------
Confidence 99999999999999999999888654 33489999999999531 1111
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHH-HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCT-EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. ...+.+++. ..++++++|||++| .|++++|++|++.++..
T Consensus 138 ------~--------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 138 ------S--------EKSAQELAKSLGDIPLFLTSAKNA------------INVDTAFEEIARSALQQ 179 (182)
T ss_dssp ------C--------HHHHHHHHHHTTSCCEEEEBTTTT------------BSHHHHHHHHHHHHHHH
T ss_pred ------C--------HHHHHHHHHhcCCCeEEEEecCCC------------CCHHHHHHHHHHHHHHh
Confidence 0 122667777 45678999999999 99999999999887643
No 57
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=5.9e-28 Score=205.25 Aligned_cols=170 Identities=15% Similarity=0.124 Sum_probs=129.8
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccccccc
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISD 120 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~ 120 (289)
.........||+|+|++|||||||+++|++..+.. .+.+|.+..+... . ...+.+.+|||+|++.|..++..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF--E--KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE--E--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE--E--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 44556677899999999999999999999999887 7788888655433 2 34578999999999999999999999
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhc----------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcc
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQ----------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDF 190 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~----------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~ 190 (289)
.+|++|+|||++++.+|+.+..|+..+... ...|+++|+||+|+...... .+..+.+
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~------------ 152 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-AELVEIL------------ 152 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-HHHHHHH------------
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-HHHHHHh------------
Confidence 999999999999999999999999887554 14489999999999653210 0111111
Q ss_pred cCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 191 CQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
....++...+++|++|||+++ .||+++|++|++.+...
T Consensus 153 -------------------------~~~~~~~~~~~~~~~~Sa~~g------------~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 153 -------------------------DLTTLMGDHPFVIFASNGLKG------------TGVHEGFSWLQETASRQ 190 (199)
T ss_dssp -------------------------THHHHHTTSCEEEEECBTTTT------------BTHHHHHHHHHHHHHHH
T ss_pred -------------------------cchhhccCCeeEEEEeeCCCc------------cCHHHHHHHHHHHHHHH
Confidence 022333567889999999999 99999999999987655
No 58
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=207.90 Aligned_cols=167 Identities=14% Similarity=0.195 Sum_probs=139.2
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+..++..+.+.+|||||++.|..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 3445689999999999999999999999988778888876653 344455667889999999999999988899999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~----------------------- 137 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--------QV----------------------- 137 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC--------CS-----------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc--------cc-----------------------
Confidence 999999999999999999999987654 34999999999995321 11
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
. ...+..++..++++|+++||++| .|++++|.+|++.+....
T Consensus 138 ---~--------~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 138 ---S--------VEEAKNRAEQWNVNYVETSAKTR------------ANVDKVFFDLMREIRARK 179 (206)
T ss_dssp ---C--------HHHHHHHHHHHTCEEEEECTTTC------------TTHHHHHHHHHHHHHHHH
T ss_pred ---c--------HHHHHHHHHHhCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHcc
Confidence 1 12267888888999999999999 999999999999887653
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=4.1e-28 Score=199.10 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=133.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+...+..+.+.+|||||++.+..++..+++.++++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 348999999999999999999999998877777776544 3445556667889999999999999888889999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+|+.+..|+..+.... ..|+++|+||+|+..... +
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~-------------------------- 126 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE--------V-------------------------- 126 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC--------S--------------------------
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc--------C--------------------------
Confidence 999999999999999998886542 348999999999953211 1
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
. ...+..++..++++++++||+++ .|++++|++|.+.+
T Consensus 127 ~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 127 S--------SSEGRALAEEWGCPFMETSAKSK------------TMVDELFAEIVRQM 164 (167)
T ss_dssp C--------HHHHHHHHHHHTSCEEEECTTCH------------HHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHhCCCEEEecCCCC------------cCHHHHHHHHHHHH
Confidence 0 12267788888999999999999 99999999998865
No 60
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=1.3e-27 Score=204.64 Aligned_cols=166 Identities=19% Similarity=0.341 Sum_probs=140.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.|..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34568999999999999999999999998888888888888777777777788999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC------CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK------FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~------~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... ..
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~---------------------------- 135 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VA---------------------------- 135 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SC----------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cC----------------------------
Confidence 99999999999999999998876542 34899999999996211 00
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHH-HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCT-EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
...+..++. ..+++|+++||++| .|++++|++|.+.++...
T Consensus 136 --------------~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 136 --------------TKRAQAWCYSKNNIPYFETSAKEA------------INVEQAFQTIARNALKQE 177 (207)
T ss_dssp --------------HHHHHHHHHHTTSCCEEECBTTTT------------BSHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHhcCCceEEEEeCCCC------------CCHHHHHHHHHHHHHHhc
Confidence 112566776 56789999999999 999999999999887654
No 61
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=7.9e-28 Score=206.88 Aligned_cols=166 Identities=22% Similarity=0.329 Sum_probs=139.8
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.|..++..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45568999999999999999999999998877888888777666666677778999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... ...
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~-------------------------------- 143 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVT-------------------------------- 143 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC-CSC--------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc-ccC--------------------------------
Confidence 99999999999999999999887654 3499999999999321 110
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
...+..++..++++|++|||+++ .|++++|.+|.+.+....
T Consensus 144 ----------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 144 ----------ADQGEALAKELGIPFIESSAKND------------DNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp ----------HHHHHHHHHHHTCCEEECBTTTT------------BSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHHHH
Confidence 11267788888999999999999 999999999998876543
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=4.1e-28 Score=199.29 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=131.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.++.+...+.+|.+..+. ..+...+..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 489999999999999999999999987777777776653 3344556678899999999999999888999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+ .
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~--------------------------~ 128 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--------QV--------------------------S 128 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC--------CS--------------------------C
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC--------cc--------------------------C
Confidence 99999999999999999886653 44999999999995321 11 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+.+..++..++++++++||+++ .|++++|++|.+.+.
T Consensus 129 --------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 129 --------VEEAKNRADQWNVNYVETSAKTR------------ANVDKVFFDLMREIR 166 (168)
T ss_dssp --------HHHHHHHHHHHTCEEEECCTTTC------------TTHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHcCCeEEEeCCCCC------------CCHHHHHHHHHHHHH
Confidence 12267888888999999999999 999999999998764
No 63
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.3e-28 Score=210.43 Aligned_cols=166 Identities=14% Similarity=0.273 Sum_probs=103.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcceEEeeEEeecCcc--eEEEEEEEcCCchhhhccccccccCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV--NFEDASDSSSELLVNGWTINTKYY--TADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~--~~~~~~~~t~~~~~~~~~i~~~~~--~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
...+||+|+|++|||||||+++|.+. .+...+.+|.+.++....+...+. .+.+.+|||||++.|..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 777777888887776666666665 78999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcC-----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQK-----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~-----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
|++|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... .+.+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-------~~~v------------------- 151 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ-------RHQV------------------- 151 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--------------CC-------------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchh-------hccC-------------------
Confidence 99999999999999999999999997764 3499999999999530 1111
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCC-CcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASN-VDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~-~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ ...+..++..++++|++|||++ + .|++++|++|++.+...
T Consensus 152 -------~--------~~~~~~~~~~~~~~~~~~Sa~~~~------------~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 152 -------R--------LDMAQDWATTNTLDFFDVSANPPG------------KDADAPFLSIATTFYRN 193 (208)
T ss_dssp -------C--------HHHHHHHHHHTTCEEEECCC-------------------CHHHHHHHHHHHHH
T ss_pred -------C--------HHHHHHHHHHcCCEEEEeccCCCC------------cCHHHHHHHHHHHHHHH
Confidence 1 1227788999999999999999 9 99999999999877644
No 64
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=1.6e-28 Score=205.71 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=123.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+..++..+.+.+|||||++.|..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45699999999999999999999999887777777765442 22334555678899999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+. .|+..+.... ..|+++|+||+|+... +.+..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~------------------------ 132 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD--------KQFFI------------------------ 132 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC--------HHHHH------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC--------ccccc------------------------
Confidence 999999999999998 7999887753 3489999999999542 11100
Q ss_pred CCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
............+.+++..+++ +|++|||++| .|++++|++|++.++.
T Consensus 133 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 133 DHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ------------ENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp HC--CCCCCHHHHHHHHHHHTCSEEEECCTTTC------------TTHHHHHHHHHHHHSC
T ss_pred ccccCCCCCHHHHHHHHHHcCCCEEEEEECCCC------------CCHHHHHHHHHHHHhc
Confidence 0000000112337788888897 8999999999 9999999999987764
No 65
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=8.2e-28 Score=203.91 Aligned_cols=167 Identities=20% Similarity=0.334 Sum_probs=135.7
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh-ccccccccCccE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS-IRSLPISDQLTA 124 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~-~~~~~~~~~ad~ 124 (289)
..+.+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.|. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3456899999999999999999999999888888888887776667667777899999999999998 788889999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... +++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--------~~v----------------------- 145 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA--------IQV----------------------- 145 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG--------CCS-----------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc--------cee-----------------------
Confidence 999999999999999999999887653 3489999999999532 111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
. ...+..++..++++|+++||+++ .+..||+++|.+|++.+.
T Consensus 146 ---~--------~~~~~~~~~~~~~~~~~~Sa~~~---------~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 146 ---P--------TDLAQKFADTHSMPLFETSAKNP---------NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ---C--------HHHHHHHHHHTTCCEEECCSSSG---------GGGSCHHHHHHHHC----
T ss_pred ---C--------HHHHHHHHHHcCCEEEEEeCCcC---------CcccCHHHHHHHHHHHHh
Confidence 1 12267888889999999999986 123689999999987664
No 66
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.1e-27 Score=206.69 Aligned_cols=182 Identities=15% Similarity=0.216 Sum_probs=135.8
Q ss_pred ccccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccccccc
Q 040295 41 TDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISD 120 (289)
Q Consensus 41 ~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~ 120 (289)
+..++....+||+|+|++|||||||+++|.++.+...+.+|.+..+.. .+..++..+.+.+|||||++.|..++..+++
T Consensus 17 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 95 (207)
T 2fv8_A 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYP 95 (207)
T ss_dssp --CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCT
T ss_pred ccccccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcC
Confidence 344455667899999999999999999999999887777777766543 2455666788999999999999999999999
Q ss_pred CccEEEEEEeCCCHhhHHHH-HHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 121 QLTALVMVFNLNDLSTLDAL-KHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l-~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
.+|++|+|||++++.+|+.+ ..|+..+.... ..|+++|+||+|+..... ....+...
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~----------------- 154 (207)
T 2fv8_A 96 DTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH----VRTELARM----------------- 154 (207)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH----HHHHHHHT-----------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc----chhhhhhc-----------------
Confidence 99999999999999999999 68988887653 348999999999964311 11111000
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.. .......+..++...++ +|++|||++| .|++++|++|.+.++..
T Consensus 155 ------~~---~~v~~~~~~~~~~~~~~~~~~~~SA~~g------------~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 155 ------KQ---EPVRTDDGRAMAVRIQAYDYLECSAKTK------------EGVREVFETATRAALQK 201 (207)
T ss_dssp ------TC---CCCCHHHHHHHHHHTTCSEEEECCTTTC------------TTHHHHHHHHHHHHHSC
T ss_pred ------cc---CCCCHHHHHHHHHhcCCCEEEEeeCCCC------------CCHHHHHHHHHHHHHHH
Confidence 00 00112237788988888 8999999999 99999999999988754
No 67
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=1.3e-28 Score=214.35 Aligned_cols=170 Identities=16% Similarity=0.218 Sum_probs=145.2
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
......+||+|+|++|||||||+++|+.+.+...+.++.+.++....+...+..+.+.+|||+|++.|..++..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34556799999999999999999998888877778888888887777777777889999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 124 ALVMVFNLNDLSTLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 124 ~vIlV~Dv~~~~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
++|+|||++++.+|+.+..|+..+.... ..|+++||||+|+.....
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------------------------------- 136 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------------------------- 136 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSS---------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccc---------------------------------
Confidence 9999999999999999999999997764 348999999999964211
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLK 269 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~ 269 (289)
.. .+..++...+++|++|||+++ .|++++|.+|.+.+.......
T Consensus 137 ---~~--------~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 137 ---KA--------KSIVFHRKKNLQYYDISAKSN------------YNFEKPFLWLARKLIGDPNLE 180 (221)
T ss_dssp ---CG--------GGCCHHHHHTCEEEECBGGGT------------BTTTHHHHHHHHHHHTCTTCC
T ss_pred ---cH--------HHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHHHhCcccc
Confidence 00 145677888999999999999 999999999999987765443
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=2.1e-27 Score=204.08 Aligned_cols=176 Identities=17% Similarity=0.248 Sum_probs=138.5
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
+....+||+|+|++|||||||+++|.++.+...+.+|.+..+.. .+..++..+.+.+|||||++.|..++..+++.+|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 44566899999999999999999999999887777887766542 34456667899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHH-HHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDAL-KHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l-~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+ ..|+..+.... ..|+++|+||+|+.... ...+.+.. .
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~---~------------------ 154 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE----HTRRELAK---M------------------ 154 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH----HHHHHHHT---T------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc----cchhhhcc---c------------------
Confidence 9999999999999999 68988887653 34899999999997531 11111100 0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
. ........+..++...++ +|++|||++| .|++++|.+|++.++
T Consensus 155 --~---~~~v~~~~~~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 155 --K---QEPVRSEEGRDMANRISAFGYLECSAKTK------------EGVREVFEMATRAGL 199 (201)
T ss_dssp --T---CCCCCHHHHHHHHHHTTCSEEEECCTTTC------------TTHHHHHHHHHHHHH
T ss_pred --c---cCcCCHHHHHHHHHhCCCcEEEEeeCCCC------------CCHHHHHHHHHHHHh
Confidence 0 000112337888998898 8999999999 999999999998764
No 69
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=9.4e-28 Score=201.13 Aligned_cols=165 Identities=14% Similarity=0.199 Sum_probs=136.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
..+.+||+|+|++|||||||+++|.+..+...+.+|.+..+. ..+...+..+.+.+|||||++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 345689999999999999999999999988777788776653 3344456678899999999999999888999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~------------------------ 141 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--------QV------------------------ 141 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC--------CS------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC--------cc------------------------
Confidence 99999999999999999999886653 34899999999995321 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. .+.+..++..++++|+++||+++ .|++++|++|.+.+...
T Consensus 142 --~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 142 --S--------VEEAKNRAEQWNVNYVETSAKTR------------ANVDKVFFDLMREIRAR 182 (187)
T ss_dssp --C--------HHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHHHHHHHHH
T ss_pred --C--------HHHHHHHHHHcCCeEEEeCCCCC------------CCHHHHHHHHHHHHHHh
Confidence 1 12267888889999999999999 99999999999887543
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=9e-28 Score=208.74 Aligned_cols=177 Identities=13% Similarity=0.213 Sum_probs=119.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34568999999999999999999999988777777776555 33445566678899999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+. .|+..+.... ..|+++||||+|+..... ....+.. .+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~------------------~~--- 164 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS----LVNKLRR------------------NG--- 164 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH----HHHHHHH------------------TT---
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch----hhhhhcc------------------cc---
Confidence 9999999999999997 7999887654 348999999999965311 0010000 00
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.......++..++...++ +|++|||++| .|++++|++|++.++..
T Consensus 165 -----~~~v~~~~~~~~~~~~~~~~~~~~SA~~g------------~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 165 -----LEPVTYHRGQEMARSVGAVAYLECSARLH------------DNVHAVFQEAAEVALSS 210 (214)
T ss_dssp -----CCCCCHHHHHHHHHHTTCSEEEECBTTTT------------BSHHHHHHHHHHHHHHC
T ss_pred -----cCcccHHHHHHHHHhcCCCEEEEecCCCC------------CCHHHHHHHHHHHHHHh
Confidence 000112237888999998 8999999999 99999999999988754
No 71
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.7e-29 Score=216.62 Aligned_cols=169 Identities=21% Similarity=0.323 Sum_probs=135.4
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
.......+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 33445679999999999999999999999988777777777777666666677778999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
|++|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.+. +.+
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~--------~~v---------------------- 156 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK--------KVV---------------------- 156 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC----------CCC----------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc--------ccC----------------------
Confidence 99999999999999999999999997764 3499999999999542 222
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..++ +..++..++++|+++||+++ .||+++|++|.+.+...
T Consensus 157 ----~~~~--------~~~~~~~~~~~~~~vSA~~g------------~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 157 ----DYTT--------AKEFADSLGIPFLETSAKNA------------TNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp ----CSCC---------CHHHHTTTCCBCCCCC---------------HHHHHHHHHHTTTTTTT
T ss_pred ----CHHH--------HHHHHHHcCCeEEEEECCCC------------CCHHHHHHHHHHHHHHh
Confidence 2333 67889999999999999999 99999999999877654
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=1e-27 Score=201.60 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=133.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE-EEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE-EEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 489999999999999999999999987777777765443 3444566778899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++.+|+.+..|+..+.... ..|+++|+||+|+.....
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~------------------------------------ 126 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV------------------------------------ 126 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS------------------------------------
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc------------------------------------
Confidence 99999999999999999886642 349999999999963210
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
..+.+..++..++++|+++||++| .|++++|.+|.+.+.....
T Consensus 127 -------~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 127 -------DTKQAQDLARSYGIPFIETSAKTR------------QGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp -------CHHHHHHHHHHHTCCEEECCTTTC------------TTHHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHhhh
Confidence 012267888889999999999999 9999999999998865543
No 73
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7e-28 Score=205.74 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=134.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+..++..+.+.+|||+|++. ..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 345689999999999999999999999988788888886653 3344566678899999999988 66677889999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|||++++.+|+.+..|+..+... ...|+++|+||+|+... +.+
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--------~~v------------------------ 150 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS--------RQV------------------------ 150 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG--------CCS------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc--------ccc------------------------
Confidence 9999999999999999999888664 24489999999999532 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCch-hHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQ-GVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~-~i~~l~~~L~~~~~~~ 265 (289)
. .+.+..++..++++|++|||+++ . |++++|.+|++.+...
T Consensus 151 --~--------~~~~~~~~~~~~~~~~~~Sa~~g------------~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 151 --S--------TEEGEKLATELACAFYECSACTG------------EGNITEIFYELCREVRRR 192 (196)
T ss_dssp --C--------HHHHHHHHHHHTSEEEECCTTTC------------TTCHHHHHHHHHHHHHHH
T ss_pred --C--------HHHHHHHHHHhCCeEEEECCCcC------------CcCHHHHHHHHHHHHHhh
Confidence 1 12267888888999999999999 9 9999999999887643
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=1.3e-28 Score=208.14 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=131.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCCcceEEeeEEe-ecCcceEEEEEEEcCCchhhhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDAS-----------DSSSELLVNGWTI-NTKYYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~-----------~~t~~~~~~~~~i-~~~~~~~~l~I~Dt~G~e~~~~ 113 (289)
....+||+|+|++|||||||++.+. +.+...+ .+|.+.++....+ ..++..+.+.+|||||++.|..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3456899999999999999996554 4544442 3455555554444 4566778999999999999999
Q ss_pred cccccccCccEEEEEEeCC------CHhhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCC
Q 040295 114 RSLPISDQLTALVMVFNLN------DLSTLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSA 186 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~------~~~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~ 186 (289)
++..+++.+|++|+|||++ +.++|+.+..|+..++... ..|+++||||+|+....
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~------------------ 151 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL------------------ 151 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC------------------
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc------------------
Confidence 9999999999999999999 6788889999999885443 33999999999995421
Q ss_pred CCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 187 DPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ .+.+.+++..+++ +|++|||++| .|++++|++|++.+...
T Consensus 152 ------------------~--------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 152 ------------------P--------VEMVRAVVDPEGKFPVLEAVATEG------------KGVFETLKEVSRLVLAR 193 (198)
T ss_dssp ------------------C--------HHHHHHHHCTTCCSCEEECBGGGT------------BTHHHHHHHHHHHHHHH
T ss_pred ------------------C--------HHHHHHHHHhcCCceEEEEecCCC------------cCHHHHHHHHHHHHHHH
Confidence 1 1126788888999 9999999999 99999999999988765
Q ss_pred c
Q 040295 266 M 266 (289)
Q Consensus 266 ~ 266 (289)
.
T Consensus 194 ~ 194 (198)
T 3t1o_A 194 V 194 (198)
T ss_dssp H
T ss_pred h
Confidence 4
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-27 Score=196.57 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=133.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.++.+...+.++.+..+.. .+...+..+.+.+|||||++.+..+...+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4899999999999999999999998877777777766532 334455667899999999999998888899999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
||++++.+++.+..|+..+.... ..|+++|+||+|+.+... +
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~--------v-------------------------- 127 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--------V-------------------------- 127 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC--------S--------------------------
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc--------c--------------------------
Confidence 99999999999999988876542 348999999999953211 1
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
. ...+..++..++++|+++||+++ .|++++|++|.+.+..
T Consensus 128 ~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 128 Q--------SSEAEALARTWKCAFMETSAKLN------------HNVKELFQELLNLEKR 167 (172)
T ss_dssp C--------HHHHHHHHHHHTCEEEECBTTTT------------BSHHHHHHHHHHTCCS
T ss_pred C--------HHHHHHHHHHhCCeEEEecCCCC------------cCHHHHHHHHHHHHhh
Confidence 0 11256788888999999999999 9999999999986644
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=2.4e-27 Score=204.58 Aligned_cols=174 Identities=14% Similarity=0.205 Sum_probs=135.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
.+.+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.|..+...+++.+|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4569999999999999999999999998877777776544 445566777888999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHH-HHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALK-HWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~-~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||++++.+|+.+. .|+..+..... .|+++||||+|+..... ....... .
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~---~-------------------- 159 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD----TIEKLKE---K-------------------- 159 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH----HHHHHHH---T--------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh----hhhhhhc---c--------------------
Confidence 999999999999997 89998877643 38999999999964321 0111100 0
Q ss_pred CCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
. ........+..++...++ +|++|||++| .||+++|++|.+.++
T Consensus 160 ~---~~~v~~~~~~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 160 K---LTPITYPQGLAMAKEIGAVKYLECSALTQ------------RGLKTVFDEAIRAVL 204 (204)
T ss_dssp T---CCCCCHHHHHHHHHHTTCSEEEECCTTTC------------TTHHHHHHHHHHTTC
T ss_pred c---cccccHHHHHHHHHhcCCcEEEEeeCCCC------------CCHHHHHHHHHHHhC
Confidence 0 000112347889999987 5999999999 999999999998653
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=1.3e-27 Score=207.15 Aligned_cols=168 Identities=17% Similarity=0.214 Sum_probs=138.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecC-cceEEEEEEEcCCchhhhccccccccCccE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTK-YYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
....+||+|+|++|||||||+++|+++.+...+.++.+..+....+... +..+.+.+|||+|++.+..+...+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3456899999999999999999999998887778888877766655443 444889999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|+|||++++.+|+.+..|+..+.... ..|+++|+||+|+... +.+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~------------------------ 135 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR--------QKI------------------------ 135 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC------------C------------------------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--------ccc------------------------
Confidence 999999999999999999999887653 2489999999999542 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
. ...+..++...+++|++|||++| .|++++|.+|.+.+.....
T Consensus 136 --~--------~~~~~~~~~~~~~~~~~~Sa~~g------------~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 136 --S--------KKLVMEVLKGKNYEYFEISAKTA------------HNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp --C--------HHHHHHHTTTCCCEEEEEBTTTT------------BTTTHHHHHHHHHHHCCTT
T ss_pred --C--------HHHHHHHHHHcCCcEEEEecCCC------------CCHHHHHHHHHHHHhcccc
Confidence 1 12267788888999999999999 9999999999998866543
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-27 Score=201.01 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=134.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.|..++..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34589999999999999999999999988777788776554 33445566788999999999999988888999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... +
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~---------~------------------------ 131 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE---------V------------------------ 131 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS---------S------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc---------c------------------------
Confidence 9999999999999998887775542 34899999999996311 0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. ...+..++..++++|+++||++| .|++++|++|++.+...
T Consensus 132 --~--------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 132 --D--------TREAQAVAQEWKCAFMETSAKMN------------YNVKELFQELLTLETRR 172 (199)
T ss_dssp --C--------HHHHHHHHHHHTCEEEECBTTTT------------BSHHHHHHHHHHHCSSS
T ss_pred --C--------HHHHHHHHHHhCCeEEEEecCCC------------CCHHHHHHHHHHHHhhh
Confidence 0 11266788888999999999999 99999999999977554
No 79
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=5.9e-27 Score=193.86 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=126.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
.+.+||+|+|++|||||||+++|.++.+. .+.+|.+.......+ . ...+.+|||||++.+..++..+++.+|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTY--K--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEE--T--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEE--C--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 34589999999999999999999998875 456677755544333 2 467999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++.+|+.+..|+..+... ...|+++|+||+|+..... .+++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~------------------------- 129 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-----SSEM------------------------- 129 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-----HHHH-------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-----HHHH-------------------------
Confidence 999999999999999998887554 4559999999999965321 1111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.......++...++++++|||+++ .|++++|++|.+.+..
T Consensus 130 ---------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 130 ---------ANSLGLPALKDRKWQIFKTSATKG------------TGLDEAMEWLVETLKS 169 (171)
T ss_dssp ---------HHHHTGGGCTTSCEEEEECCTTTC------------TTHHHHHHHHHHHHHT
T ss_pred ---------HHHhCchhccCCceEEEECcCCCC------------cCHHHHHHHHHHHHhh
Confidence 000011223345678999999999 9999999999987643
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=6.8e-27 Score=191.28 Aligned_cols=159 Identities=22% Similarity=0.280 Sum_probs=133.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMV 128 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV 128 (289)
.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+...+..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999988777777776554 33444556678899999999999988888899999999999
Q ss_pred EeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 129 FNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 129 ~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
||++++.+++.+..|+..+.... ..|+++|+||+|+.+.. .
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~----------------------------------- 125 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-V----------------------------------- 125 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-S-----------------------------------
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-c-----------------------------------
Confidence 99999999999999999886653 35899999999996411 0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 206 DEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+.+.+++..++++++++||+++ .|++++|++|.+.+.
T Consensus 126 -------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 126 -------ESRQAQDLARSYGIPYIETSAKTR------------QGVEDAFYTLVREIR 164 (166)
T ss_dssp -------CHHHHHHHHHHHTCCEEEECTTTC------------TTHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHcCCeEEEecCCCC------------CCHHHHHHHHHHHHH
Confidence 012267888889999999999999 999999999998764
No 81
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=7.6e-27 Score=200.04 Aligned_cols=161 Identities=15% Similarity=0.161 Sum_probs=123.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh-hhccccccccCccEE
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVN--FEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE-FSIRSLPISDQLTAL 125 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~--~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~-~~~~~~~~~~~ad~v 125 (289)
.+||+|+|++|||||||+++|.+.. +...+. +.+.+++...+..++..+.+.+|||+|++. +..+...|++.++++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 4899999999999999999999643 333333 344555555666677788899999999876 555677788999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|||++++.+|+.+..|+..+... ...|+++||||+|+... +.+
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~--------r~v------------------------ 132 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX--------REV------------------------ 132 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG--------CCS------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc--------ccc------------------------
Confidence 9999999999999999998877654 23489999999999531 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
. ...+..++..++++|+||||++| .||+++|++|++.+..
T Consensus 133 --~--------~~~~~~~a~~~~~~~~e~SA~~g------------~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 133 --S--------VSEGRAXAVVFDXKFIETSAAVQ------------HNVKELFEGIVRQVRL 172 (192)
T ss_dssp --C--------HHHHHHHHHHTTCEEEECBTTTT------------BSHHHHHHHHHHHHHH
T ss_pred --c--------HHHHHHHHHHhCCceEEeccccC------------CCHHHHHHHHHHHHHh
Confidence 1 11256778888999999999999 9999999999988753
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=3.9e-27 Score=193.93 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=121.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEE
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVF 129 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 129 (289)
+||+++|++|||||||+++|.++.+.. +.+|.+.... .+... .+.+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEE--EEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEE--EEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 4567664333 33333 467999999999999998888999999999999
Q ss_pred eCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 130 NLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 130 Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
|++++++|+.+..|+..+... ...|+++||||+|+..... .+.+.
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~--------------------------- 123 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-----AAEIT--------------------------- 123 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-----HHHHH---------------------------
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC-----HHHHH---------------------------
Confidence 999999999999999887553 3459999999999964311 11110
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 207 EEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
......++...++++++|||+++ .|++++|++|.+.+..
T Consensus 124 -------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 124 -------DKLGLHSLRHRNWYIQATCATSG------------DGLYEGLDWLSNQLRN 162 (164)
T ss_dssp -------HHTTGGGCSSCCEEEEECBTTTT------------BTHHHHHHHHHHHC--
T ss_pred -------HHhCcccccCccEEEEEcccCCC------------cCHHHHHHHHHHHHhh
Confidence 00011222234568999999999 9999999999987754
No 83
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=1.5e-26 Score=195.75 Aligned_cols=163 Identities=21% Similarity=0.235 Sum_probs=125.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+++|++|||||||+++|.++.+...+.++.+..+. ..+...+..+.+.+|||+|++.|..+...+++.++++|
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 34589999999999999999999999887777777765553 34445566788999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC---CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK---FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++.+|+.+..|+..+.... ..|+++|+||+|+.... .
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~--------------------------------- 143 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-V--------------------------------- 143 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-S---------------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-C---------------------------------
Confidence 9999999999999999998886653 34899999999996411 0
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..+.+.+++..+++++++|||+++ .|++++|++|.+.+...
T Consensus 144 ---------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 144 ---------DTKQAHELAKSYGIPFIETSAKTR------------QGVEDAFYTLVREIRQY 184 (190)
T ss_dssp ---------CHHHHHHHHHHHTCCEEECCTTTC------------TTHHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHH
Confidence 012267888889999999999999 99999999999887643
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=1.4e-26 Score=195.31 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=127.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
.+.+||+++|++|||||||+++|.++. ...+.+|.+.......+ + .+.+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~--~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH--R--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE--T--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999888 56677788765544433 3 467999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++.+|+.+..|+..+... ...|+++|+||+|+...... .+..+..
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~------------------------- 144 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC-NAIQEAL------------------------- 144 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHT-------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH-HHHHHHh-------------------------
Confidence 999999999999999999887554 44599999999999653210 0000000
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
....+...++++++|||+++ .|++++|++|.+.+..+
T Consensus 145 -------------~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 145 -------------ELDSIRSHHWRIQGCSAVTG------------EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp -------------TGGGCCSSCEEEEECCTTTC------------TTHHHHHHHHHHHHHTC
T ss_pred -------------ChhhccCCceEEEEeeCCCC------------CCHHHHHHHHHHHHHhc
Confidence 00111234678999999999 99999999999877544
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=7.9e-27 Score=200.66 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=88.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+++|++|||||||+++|.++.+. .+.+|.+....... .++ +.+.+|||||++.++.++..+++.+|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~--~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELT--IAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEE--ETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEE--ECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 3479999999999999999999988874 45667665543333 333 689999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLP 166 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~ 166 (289)
|||++++++|+.+..|+..+... ...|+++||||+|+..
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 99999999999999999888654 3459999999999964
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=1.1e-26 Score=197.20 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=128.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
.+.+||+|+|++|||||||+++|.++.+...+.+|.+..+.... ...+.+.+|||||++.|..++..+++.+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE----ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEE----eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 34589999999999999999999999988778888887765432 23568999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++.+|+.+..|+..+... ...|+++|+||+|+..... .+++.
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~------------------------ 146 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-----EKELI------------------------ 146 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-----HHHHH------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC-----HHHHH------------------------
Confidence 999999999999999999887553 4458999999999964311 11110
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
......++...++++++|||++| .|++++|++|.+.+...
T Consensus 147 ----------~~~~~~~~~~~~~~~~~~SA~~g------------~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 147 ----------EKMNLSAIQDREICCYSISCKEK------------DNIDITLQWLIQHSKSR 186 (188)
T ss_dssp ----------HHTTGGGCCSSCEEEEECCTTTC------------TTHHHHHHHHHHTCC--
T ss_pred ----------HHhChhhhccCCeeEEEEECCCC------------CCHHHHHHHHHHHHHhh
Confidence 00001112234568999999999 99999999999877543
No 87
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=5.4e-27 Score=198.53 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=123.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+++|++|||||||+++|.+..+ ..+.+|.+.......+ + .+.+.+|||+|++.|+..+..+++.+|++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~--~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQS--Q--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEE--T--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999998865 3456677754433333 3 467999999999999988889999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++.+|+.+..|+..+... ...|+++||||+|+...... .+..+.+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~------------------------- 142 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA-SEIAEGL------------------------- 142 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH-HHHHHHT-------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH-HHHHHHh-------------------------
Confidence 999999999999999998877443 34599999999999643211 0000100
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
....+...+++|++|||++| .|++++|++|++.+..
T Consensus 143 -------------~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 143 -------------NLHTIRDRVWQIQSCSALTG------------EGVQDGMNWVCKNVNA 178 (181)
T ss_dssp -------------TGGGCCSSCEEEEECCTTTC------------TTHHHHHHHHHHTC--
T ss_pred -------------CchhccCCceEEEEccCCCC------------CCHHHHHHHHHHHHHh
Confidence 00111234578999999999 9999999999987754
No 88
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=3.9e-27 Score=199.64 Aligned_cols=166 Identities=17% Similarity=0.273 Sum_probs=123.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcceEEeeEEeec---CcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV--NFEDASDSSSELLVNGWTINT---KYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~--~~~~~~~~t~~~~~~~~~i~~---~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
.+||+|+|++|||||||+++|.+. .+...+.+|.+.++..+.+.. .+..+.+.+|||+|++.|..+...++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 455567788888876665542 234678999999999999999989999999
Q ss_pred EEEEEEeCCCH-hhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 124 ALVMVFNLNDL-STLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 124 ~vIlV~Dv~~~-~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
++++|||++++ .+|+.+..|+..+.... ..|+++||||+|+.. .+.+.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--------~~~~~---------------------- 131 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD--------EKQRK---------------------- 131 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC--------HHHHH----------------------
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc--------chhhH----------------------
Confidence 99999999987 68999999999987654 459999999999953 22220
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCe----EEEeecCCCcccccccCCCCch-hHHHHHHHHHHhcccC
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIE----YIEACASNVDFDKCLSIDGDSQ-GVERLYGALSAHMWPG 265 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~ie~Sa~~~~~~~~~~~~~~~~-~i~~l~~~L~~~~~~~ 265 (289)
......+..++..++++ |+++||+++ . +++++++.|.+.+...
T Consensus 132 ---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 132 ---------ACMSKITKELLNKRGFPAIRDYHFVNATEE------------SDALAKLRKTIINESLNF 179 (184)
T ss_dssp ---------HHHHHHHHHTTTCTTSCEEEEEEECCTTSC------------CHHHHHHHHHHHHHHHCC
T ss_pred ---------HHHHHHHHHHHHhcCCcchhheEEEecccC------------chhHHHHHHHHHHHHhcc
Confidence 00112256777777886 999999999 7 9999999998876553
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.2e-27 Score=197.40 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=121.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+|+|++|||||||+++|.++.+. .+.+|.+.......+ + .+.+.+|||||++++..++..+++.+|++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI--N--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE--T--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 3589999999999999999999998876 566677654433333 3 3789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++++|+.+..|+..+... ...|+++|+||+|+..... .+++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i-------------------------- 138 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT-----VAEI-------------------------- 138 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC-----HHHH--------------------------
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC-----HHHH--------------------------
Confidence 99999999999999999988664 4559999999999964211 1111
Q ss_pred CCCCCcHHHHHHHHHH----HHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 205 GDEEPSWEIRRSCLEW----CTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~----~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
...+ +...++++++|||++| .|++++|++|++.+...
T Consensus 139 ------------~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 139 ------------SQFLKLTSIKDHQWHIQACCALTG------------EGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp ------------HHHHTGGGCCSSCEEEEECBTTTT------------BTHHHHHHHHHHHHCC-
T ss_pred ------------HHHhChhhhcCCCcEEEEccCCCC------------cCHHHHHHHHHHHHHHH
Confidence 1111 1234678999999999 99999999999977554
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=8.2e-27 Score=196.67 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=123.0
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQL 122 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~a 122 (289)
.....+.+||+|+|++|||||||+++|.++.+ ..+.+|.+..+....+ + .+.+.+|||+|++.+..++..+++.+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI--N--NTRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE--T--TEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhccC
Confidence 33455679999999999999999999999988 4566677655443333 3 36899999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 123 TALVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 123 d~vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
|++|+|||++++.+|+.+..|+..+... ...|+++|+||+|+..... .+++
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i--------------------- 143 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT-----VAEI--------------------- 143 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-----HHHH---------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC-----HHHH---------------------
Confidence 9999999999999999999999887654 4559999999999964211 1111
Q ss_pred CCCCCCCCCCcHHHHHH-HHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 200 GSSLLGDEEPSWEIRRS-CLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.+. ....+...++++++|||+++ .|++++|++|++.
T Consensus 144 --------------~~~~~~~~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~ 180 (181)
T 2h17_A 144 --------------SQFLKLTSIKDHQWHIQACCALTG------------EGLCQGLEWMMSR 180 (181)
T ss_dssp --------------HHHTTGGGCCSSCEEEEECBTTTT------------BTHHHHHHHHHTC
T ss_pred --------------HHHhCcccccCCceEEEEccCCCC------------cCHHHHHHHHHhh
Confidence 000 01112234678999999999 9999999999865
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=4.7e-26 Score=194.36 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=122.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+++|++|||||||+++|.++.+. .+.+|.+.......+ ++ +.+.+|||||++.++.++..+++.+|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~--~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAI--GN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEE--TT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEE--CC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 3479999999999999999999998874 466777765443333 33 689999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++.+|+.+..|+..+... ...|+++||||+|+.... ..+..++.. +...
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~--------------~~~~------- 153 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSAL--------------GLLN------- 153 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHT--------------TCSS-------
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC--CHHHHHHHh--------------CCcc-------
Confidence 99999999999999999888543 445999999999996521 111111110 0000
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.... .. ++...+++|++|||++| .|++++|++|++.
T Consensus 154 ~~~~--------~~-~~~~~~~~~~~~Sa~~g------------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 154 TTGS--------QR-IEGQRPVEVFMCSVVMR------------NGYLEAFQWLSQY 189 (190)
T ss_dssp CCC------------CCSSCCEEEEECBTTTT------------BSHHHHHHHHHTT
T ss_pred cccc--------cc-ccccceEEEEEeECCcC------------CCHHHHHHHHHhh
Confidence 0000 00 12234678999999999 9999999999865
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=194.50 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=124.8
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCcc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVN-FEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLT 123 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad 123 (289)
...+.+||+|+|++|||||||+++|.+.. +...+.+|.+....... .+ .+.+.+|||+|++.+..++..+++.+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK--SS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEE--CS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEE--EC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34556899999999999999999999987 56667778875544333 33 267999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHhhhc-----CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 124 ALVMVFNLNDLSTLDALKHWVPSIDLQ-----KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 124 ~vIlV~Dv~~~~S~~~l~~~~~~i~~~-----~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
++|+|||++++.+|+.+..|+..+... ...|+++|+||+|+..... ..+
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~--------------------- 146 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-----SVK--------------------- 146 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-----HHH---------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-----HHH---------------------
Confidence 999999999999999999999888655 3458999999999964211 011
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHH-----HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCT-----EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+.+++. ..++++++|||+++ .|++++|++|.+.+.
T Consensus 147 ------------------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 147 ------------------VSQLLCLENIKDKPWHICASDAIKG------------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ------------------HHHHHTGGGCCSSCEEEEECBTTTT------------BTHHHHHHHHHHHC-
T ss_pred ------------------HHHHhChhhccCCceEEEEccCCCC------------cCHHHHHHHHHHHHH
Confidence 222221 23678999999999 999999999998663
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.94 E-value=2.3e-26 Score=196.65 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=119.8
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
..+.+||+|+|++|||||||+++|.++.+. .+.+|.+.... .+.. ..+.+.+|||||++.|..++..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEE--EEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 345699999999999999999999988875 34556664333 2332 247899999999999999888899999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 126 VMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
|+|||++++++|+.+..|+..+... ...|+++|+||+|+..... .+++.
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~----------------------- 152 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP-----VSELT----------------------- 152 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-----HHHHH-----------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC-----HHHHH-----------------------
Confidence 9999999999999999999887553 3459999999999964311 11110
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
......++...++++++|||++| .|++++|++|++.+..
T Consensus 153 -----------~~~~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 153 -----------DKLGLQHLRSRTWYVQATCATQG------------TGLYDGLDWLSHELSK 191 (192)
T ss_dssp -----------HHTTGGGCSSCCEEEEECBTTTT------------BTHHHHHHHHHHHTTT
T ss_pred -----------HHhCcccccCCceEEEECcCCCc------------CCHHHHHHHHHHHHhc
Confidence 00011222234568999999999 9999999999987643
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=1.3e-25 Score=192.62 Aligned_cols=165 Identities=18% Similarity=0.310 Sum_probs=137.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
+..+||+|+|++|||||||+++|.+..+...+.+|.+..+....+..++..+.+.+|||+|++.++.+...+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 44589999999999999999999999988788888887777677777788889999999999999988888899999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
+|||+++..+|+.+..|+..+.... ..|+++|+||+|+... +.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~--------~~~-------------------------- 128 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL--------RAV-------------------------- 128 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--------CCS--------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc--------cCc--------------------------
Confidence 9999999999999999998876542 3489999999999431 111
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. ...+..++...++.+++|||+++ .|++++|+.|.+.+...
T Consensus 129 ~--------~~~a~~l~~~~~~~~~d~Sal~~------------~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 129 P--------TDEARAFAEKNNLSFIETSALDS------------TNVEEAFKNILTEIYRI 169 (199)
T ss_dssp C--------HHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHcCCeEEEEeCCCC------------CCHHHHHHHHHHHHHHH
Confidence 0 11277888899999999999999 99999999999888654
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=2.7e-26 Score=194.28 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=125.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.+||+|+|++|||||||+++|..+.+. .+.+|.+........ . .+.+.+|||||++.+..++..+++.+|++|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQY--K--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEE--T--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 4589999999999999999999988875 355677654443333 2 4689999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLL 204 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|||++++++|+.+..|+..+... ...|+++|+||+|+..... .+++.
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~------------------------- 145 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS-----EAEIA------------------------- 145 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-----HHHHH-------------------------
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-----HHHHH-------------------------
Confidence 99999999999999998887554 3459999999999964321 11110
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 205 GDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
......++...++++++|||+++ .|++++|++|.+.+...
T Consensus 146 ---------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 146 ---------EQLGVSSIMNRTWTIVKSSSKTG------------DGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ---------HHTTGGGCCSSCEEEEECCTTTC------------TTHHHHHHHHHHHHHHT
T ss_pred ---------HHhChhhccCCceEEEEccCCCc------------cCHHHHHHHHHHHHHhc
Confidence 00011223344678999999999 99999999999877543
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=9.7e-26 Score=192.89 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=120.7
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEE--eeEEeec-CcceEEEEEEEcCCchhhhccc---c
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLV--NGWTINT-KYYTADVSLWMAHLHEEFSIRS---L 116 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~--~~~~i~~-~~~~~~l~I~Dt~G~e~~~~~~---~ 116 (289)
.....+.+||+|+|++|||||||++++.+. +... ++.+..+ ....... .+..+.+.+|||+|++.|.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 344556799999999999999999988764 3332 2333322 2222221 2456789999999999998776 7
Q ss_pred ccccCccEEEEEEeCCCH--hhHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 117 PISDQLTALVMVFNLNDL--STLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~--~S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
.+++++|++|+|||++++ ++++.+..|+..+.... ..|+++||||+|+.+.... .+..+.+
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~v--------------- 154 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHK-IETQRDI--------------- 154 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH-HHHHHHH---------------
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhh-hHHHhHH---------------
Confidence 899999999999999997 78888888888875433 4499999999999642100 0112223
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHH----HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCT----EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+.+..++. ..+++|++|||++ .||+++|..|++.++
T Consensus 155 -------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~-------------~~v~~~f~~l~~~li 196 (196)
T 3llu_A 155 -------------------HQRANDDLADAGLEKLHLSFYLTSIYD-------------HSIFEAFSKVVQKLI 196 (196)
T ss_dssp -------------------HHHHHHHHHHTTCTTSCEEEEEECTTS-------------THHHHHHHHHHHHTC
T ss_pred -------------------HHHHHHHHHHhhhhcCCcceEEEEech-------------hhHHHHHHHHHHHhC
Confidence 1223667777 6788999999997 699999999998764
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=5.6e-26 Score=190.55 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=120.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
.+.+||+|+|++|||||||+++|.++.+ ..+.+|.+.......+ + ...+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY--K--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE--T--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999998887 4566777755443333 2 368999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++.+|+.+..|+..+... ...|+++|+||+|+..... .+++.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~i~------------------------ 141 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS-----ASEVS------------------------ 141 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC-----HHHHH------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC-----HHHHH------------------------
Confidence 999999999999999999888654 3449999999999964311 11110
Q ss_pred CCCCCCcHHHHHH-HHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 204 LGDEEPSWEIRRS-CLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+. ....+...++++++|||+++ .|++++|++|.+.+.
T Consensus 142 -----------~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 142 -----------KELNLVELKDRSWSIVASSAIKG------------EGITEGLDWLIDVIK 179 (183)
T ss_dssp -----------HHTTTTTCCSSCEEEEEEBGGGT------------BTHHHHHHHHHHHHH
T ss_pred -----------HHhCcccccCCceEEEEccCCCC------------cCHHHHHHHHHHHHH
Confidence 00 00011223568999999999 999999999998764
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=3.7e-25 Score=202.69 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=139.1
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTAL 125 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~v 125 (289)
....+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||||++.|..+...+++.+|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 34568999999999999999999999998877878877655 34455566778899999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 126 VMVFNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 126 IlV~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|||++++.+|+.+. .|+..+.... ..|+++||||+|+.+... ....+.. .
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~------------------~---- 284 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD----TIEKLKE------------------K---- 284 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH----HHHHHHH------------------T----
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc----hhhhccc------------------c----
Confidence 9999999999999997 7988887654 448999999999954310 0111100 0
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
. ........+..++...++ +|++|||++| .|++++|..|++.++.
T Consensus 285 -~---~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 285 -K---LTPITYPQGLAMAKEIGAVKYLECSALTQ------------RGLKTVFDEAIRAVLC 330 (332)
T ss_dssp -T---CCCCCHHHHHHHHHHTTCSEEEECCTTTC------------TTHHHHHHHHHHHHHC
T ss_pred -c---cccccHHHHHHHHHHcCCcEEEEecCCCC------------cCHHHHHHHHHHHHhc
Confidence 0 000112347889999997 8999999999 9999999999987754
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=7.7e-28 Score=206.72 Aligned_cols=169 Identities=14% Similarity=0.239 Sum_probs=133.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+|||||++.|..++..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4568999999999999999999999888777777766544 334445566778899999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHH-HHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHH----HHhhhcccCCCCCcccCCCCCcccC
Q 040295 127 MVFNLNDLSTLDALK-HWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYR----RRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~-~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~----r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
+|||++++.+|+.+. .|+..+.... ..|+++|+||+|+.+......... +.+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v---------------------- 164 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI---------------------- 164 (204)
Confidence 999999999999997 8988887653 348999999999964321000000 011
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+ .+..++...++ +|++|||++| .|++++|++|++.+
T Consensus 165 ----~~~--------~~~~~~~~~~~~~~~~vSA~~g------------~gi~~l~~~l~~~i 203 (204)
T 3th5_A 165 ----TYP--------QGLAMAKEIGAVKYLECSALTQ------------RGLKTVFDEAIRAV 203 (204)
Confidence 222 27788888888 8999999999 99999999998765
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=7.9e-25 Score=187.09 Aligned_cols=164 Identities=18% Similarity=0.301 Sum_probs=139.5
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|++|||||||+++|.+..+...+.+|.+.++....+..++..+.+.+||++|++++..+...+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 34456899999999999999999999999888888999988877777778888889999999999999888888999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSS 202 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
+++|||+++..+|+.+..|+..+.... ..|+++|+||+|+.... .+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~--------~~------------------------ 152 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--------AV------------------------ 152 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--------CS------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--------cc------------------------
Confidence 999999999999999999998776542 34899999999994311 11
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 203 LLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
. ...+..++...++.+++|||+++ .|++++|+.|.+.+
T Consensus 153 --~--------~~~a~~l~~~~~~~~ld~Sald~------------~~v~~l~~~l~~~i 190 (191)
T 1oix_A 153 --P--------TDEARAFAEKNGLSFIETSALDS------------TNVEAAFQTILTEI 190 (191)
T ss_dssp --C--------HHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHHHHHH
T ss_pred --C--------HHHHHHHHHHcCCEEEEEeCCCC------------CCHHHHHHHHHHHh
Confidence 0 12278889999999999999999 99999999998765
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=200.55 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=124.1
Q ss_pred ccccCCCceEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCc-ceEEeeEEee--------------cCc
Q 040295 43 RASLEKRPGILIIGSS---------NVGKRTILSRLLS---VNFEDASDSSS-ELLVNGWTIN--------------TKY 95 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~---------gvGKSSLi~rl~~---~~~~~~~~~t~-~~~~~~~~i~--------------~~~ 95 (289)
.......+||+|+|++ |||||||+++|++ ..+...+.+|. +.++....+. .++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3445667999999999 9999999999999 55655555554 4443222221 245
Q ss_pred ceEEEEEEE-----------------------cCCchhhhcccccccc---------------------CccEEEEEEeC
Q 040295 96 YTADVSLWM-----------------------AHLHEEFSIRSLPISD---------------------QLTALVMVFNL 131 (289)
Q Consensus 96 ~~~~l~I~D-----------------------t~G~e~~~~~~~~~~~---------------------~ad~vIlV~Dv 131 (289)
..+.+.||| ++|+++|..++..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 567899999 8889999888888887 79999999999
Q ss_pred CCH--hhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCC
Q 040295 132 NDL--STLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGD 206 (289)
Q Consensus 132 ~~~--~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (289)
+++ .+|+.+..|+..+... ...|+++||||+|+.. .+.+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~--------~~~v---------------------------- 216 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV--------ERYI---------------------------- 216 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC--------HHHH----------------------------
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc--------cHHH----------------------------
Confidence 998 9999999999988654 4458999999999943 2222
Q ss_pred CCCcHHHHHHHHHHHHH-cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 207 EEPSWEIRRSCLEWCTE-HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+..++.. .+++|++|||+++ .||+++|.+|++.+
T Consensus 217 --------~~~~~~~~~~~~~~~~e~SAk~g------------~gv~elf~~l~~~l 253 (255)
T 3c5h_A 217 --------RDAHTFALSKKNLQVVETSARSN------------VNVDLAFSTLVQLI 253 (255)
T ss_dssp --------HHHHHHHHTSSSCCEEECBTTTT------------BSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhcCCCeEEEEECCCC------------CCHHHHHHHHHHHh
Confidence 126777776 4789999999999 99999999998765
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=3e-25 Score=206.59 Aligned_cols=164 Identities=14% Similarity=0.134 Sum_probs=121.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc---cccccccCccE
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFED---ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI---RSLPISDQLTA 124 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~---~~~~~~~~ad~ 124 (289)
||+++|++|||||||++++.++-+.. .+.+|.+..+... . ..++++|||||||++|+. ....|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~---~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--S---TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--C---SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--c---cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999987664432 2567888776542 1 347899999999999964 35789999999
Q ss_pred EEEEEeCCCH--hhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDL--STLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~--~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|||++++ ++++.+..|+..+....+ .|+++||||+|+...... .+..|++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R-~~~~R~V----------------------- 131 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK-VDAQRDI----------------------- 131 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH-HHHHHHH-----------------------
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhh-hhHHHHh-----------------------
Confidence 9999999998 444445555665554433 399999999999753100 0012334
Q ss_pred CCCCCCCCcHHHHHHHHHHHHH----cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTE----HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMV 267 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~ 267 (289)
..+.+++++.. +++.|+||||++ .+|.++|..+++.++++..
T Consensus 132 -----------~~~~~~~la~~~~~~~~i~f~eTSAkd-------------~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 132 -----------MQRTGEELLELGLDGVQVSFYLTSIFD-------------HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp -----------HHHHHHTTSSSSCSCCCEEEECCCSSS-------------SHHHHHHHHHHTTSSTTHH
T ss_pred -----------hHHHHHHHHhhcccccCceEEEeccCC-------------CcHHHHHHHHHHHHHhhHH
Confidence 22336777775 688999999986 5899999999999988754
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=2.2e-24 Score=179.53 Aligned_cols=153 Identities=16% Similarity=0.043 Sum_probs=111.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc------ccccccc--
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI------RSLPISD-- 120 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~------~~~~~~~-- 120 (289)
.+||+++|++|||||||+++|.+..+.....++.+.......+..++ ..+.+|||||++.|.. +...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998876544334333333333333332 5799999999988752 3345554
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
+++++++|||+++.+. ...|+..+... ..|+++|+||+|+. ..+.+
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~-~~p~ilv~nK~Dl~--------~~~~~---------------------- 126 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM-GANLLLALNKMDLA--------KSLGI---------------------- 126 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT-TCCEEEEEECHHHH--------HHTTC----------------------
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc-CCCEEEEEEchHhc--------cccCh----------------------
Confidence 8999999999998544 44577776653 45899999999983 22222
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
. .+ +..++..++++|+++||++| .|++++|++|.+.+
T Consensus 127 ----~-~~--------~~~~~~~~~~~~~~~SA~~~------------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 127 ----E-ID--------VDKLEKILGVKVVPLSAAKK------------MGIEELKKAISIAV 163 (165)
T ss_dssp ----C-CC--------HHHHHHHHTSCEEECBGGGT------------BSHHHHHHHHHHHT
T ss_pred ----h-hH--------HHHHHHHhCCCEEEEEcCCC------------CCHHHHHHHHHHHh
Confidence 1 12 67888888999999999999 99999999998765
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1.7e-24 Score=180.39 Aligned_cols=161 Identities=15% Similarity=0.189 Sum_probs=114.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.+..+...+.++.+..+....+..++ ..+.+|||||++.|..++..+++.+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999999988766555554444333343343 35789999999999999999999999999
Q ss_pred EEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||+++ ..+++.+. .+.. ...|+++|+||+|+..... .+....+
T Consensus 84 ~v~d~~~~~~~~~~~~l~----~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~------------------------- 131 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAIN----HAKA-ANVPIIVAINKMDKPEANP--DRVMQEL------------------------- 131 (178)
T ss_dssp EEEETTCCCCHHHHHHHH----HHGG-GSCCEEEEEETTTSSCSCH--HHHHHHH-------------------------
T ss_pred EEEECCCCCcHHHHHHHH----HHHh-CCCCEEEEEECccCCcCCH--HHHHHHH-------------------------
Confidence 9999998 55554443 2222 2348999999999964210 0000111
Q ss_pred CCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
+....++..++ ++|++|||+++ .|++++|++|++.+..
T Consensus 132 -----------~~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 132 -----------MEYNLVPEEWGGDTIFCKLSAKTK------------EGLDHLLEMILLVSEM 171 (178)
T ss_dssp -----------TTTTCCBTTTTSSEEEEECCSSSS------------HHHHHHHHHHHHHHHH
T ss_pred -----------HhcCcChhHcCCcccEEEEecCCC------------CCHHHHHHHHHHhhhh
Confidence 00111122233 68999999999 9999999999986643
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.91 E-value=7.8e-24 Score=195.12 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=129.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh-----hccccccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE---DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF-----SIRSLPIS 119 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~---~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~-----~~~~~~~~ 119 (289)
..+||+++|++|||||||+++|+++... ..+.+|.+..+....+.. .+.+.+|||||++.| ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~---~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG---NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT---TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC---ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 3589999999999999999999987322 246678887776555422 478999999999998 67788889
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHHHHhhh---cC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWVPSIDL---QK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~---~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
+++|++|+|||++++.+|+.+..|...+.. .. ..|+++||||+|+.. +..+..
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~------~~~r~~----------------- 135 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ------LDKREE----------------- 135 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC------HHHHHH-----------------
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc------hhhhhH-----------------
Confidence 999999999999999999999877655533 22 349999999999964 122321
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcC---CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHR---IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
........+..++..+| ++|++|||++. ++.++|..+++.+++..
T Consensus 136 -------------~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~~-------------~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 136 -------------LFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-------------SLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp -------------HHHHHHHHHHHHHHTTTCCSCEEEECCTTSS-------------HHHHHHHHHHHTTCSCH
T ss_pred -------------HHHHHHHHHHHHHHHcCCCCeEEEEeeecCC-------------hHHHHHHHHHHHHcCCH
Confidence 00122344889999997 68999999984 89999999998887764
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=1.5e-23 Score=181.00 Aligned_cols=195 Identities=17% Similarity=0.174 Sum_probs=116.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc-cccccccCccEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI-RSLPISDQLTALV 126 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~-~~~~~~~~ad~vI 126 (289)
..+||+|+|++|||||||+++|+++.+...+.++. ..+....+... ..+.+.+|||||++.|.. ++..|++.+|++|
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAIYKVNNN-RGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEEEECSST-TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEEEEecCC-CccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 45899999999999999999999999877665443 44444333221 247899999999999987 7788899999999
Q ss_pred EEEeCCCHh-hHHHHHHH-HHHhhh----cCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 127 MVFNLNDLS-TLDALKHW-VPSIDL----QKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 127 lV~Dv~~~~-S~~~l~~~-~~~i~~----~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
+|||+++.. ++..+..| ...+.. ....|+++||||+|+....... .....+...-.. -|.+-...++..+|
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~l~~~l~~--~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAK-LIQQQLEKELNT--LRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHH-HHHHHHHHHHHH--HHHHCC--------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHH-HHHHHHHHHHHH--HhccchhccccccC
Confidence 999999854 56666544 444433 1234999999999997654321 111111000000 00000001111111
Q ss_pred CCCC---CCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 201 SSLL---GDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 201 ~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.... ..++ +..|+..+ +++|+||||++| .......||+++|++|.+.
T Consensus 161 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~e~SAk~g------~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKK--------GKEFEFSQLPLKVEFLECSAKGG------RGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCT--------TSCCCGGGSSSCEEEEECBCC-------------CCBCHHHHHHHHHH
T ss_pred CccccccccCC--------CCCcccccCCCcEEEEEeeccCC------CccccccChHHHHHHHHHh
Confidence 1110 1111 33444433 778999999997 2223337999999999875
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.4e-24 Score=199.51 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=118.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALV 126 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vI 126 (289)
...+||+|+|++|||||||+++|.++.+...+ +|.+..+.... . ..+.+.||||||++.|..+...+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~~~--~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEEEE--E--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEEEe--c--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 34579999999999999999999998875433 56665554332 2 3468999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCC
Q 040295 127 MVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSL 203 (289)
Q Consensus 127 lV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
+|||++++.+|+.+..|+..+... ...|+|+||||+|+..... .+++.
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-----~~~i~------------------------ 288 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-----AAEIT------------------------ 288 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-----HHHHH------------------------
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC-----HHHHH------------------------
Confidence 999999999999999888776443 2459999999999964321 11110
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 204 LGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.......+...+++|++|||++| .||+++|+.|++.+..
T Consensus 289 ----------~~~~~~~~~~~~~~~~~vSAk~g------------~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 289 ----------DKLGLHSLRHRNWYIQATCATSG------------DGLYEGLDWLSNQLRN 327 (329)
T ss_dssp ----------HHHTCTTCCSSCEEEEECBTTTT------------BTHHHHHHHHHHHHTC
T ss_pred ----------HHhchhhhhcCCCEEEEEECCCC------------cCHHHHHHHHHHHHHh
Confidence 00001112224567999999999 9999999999987754
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=9.4e-23 Score=198.79 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=125.8
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccE
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTA 124 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~ 124 (289)
.....+||+|+|.+|||||||+++|.++.+. .+.+|.+..+..+. .. .+.+.+|||+|++.|..++..+++.+|+
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 392 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT--YK--NVKFNVWDVGGQDKIRPLWRHYYTGTQG 392 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEE--SS--SCEEEEEEECCCGGGSGGGGGGGTTCCE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEE--eC--CEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 3456699999999999999999999999865 45567777665433 33 3679999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 125 LVMVFNLNDLSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 125 vIlV~Dv~~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|+|||++++.+|+.+..|+..+... ...|+|+|+||+|+...... .+....+
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~----------------------- 448 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKL----------------------- 448 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH-HHHHHHT-----------------------
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH-HHHHHHh-----------------------
Confidence 99999999999999999998888543 34599999999999643210 0011111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
...++...++++++|||++| .||+++|++|.+.+-.
T Consensus 449 ---------------~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 449 ---------------GLTRIRDRNWYVQPSCATSG------------DGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ---------------TCTTCCSSCEEEEECBTTTT------------BTHHHHHHHHHHHCC-
T ss_pred ---------------chhhhhcCCeEEEEEECCCC------------CCHHHHHHHHHHHHHh
Confidence 01111224567999999999 9999999999987643
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=4.7e-23 Score=180.58 Aligned_cols=165 Identities=12% Similarity=0.070 Sum_probs=115.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCc------hh----hhcccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLH------EE----FSIRSL 116 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~------e~----~~~~~~ 116 (289)
...+||+|+|++|||||||+++|++..+.....+..........+... ...+.+|||||+ +. +..+ .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTI-T 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence 456899999999999999999999988742211111111111111112 367999999999 43 3222 2
Q ss_pred ccccCccEEEEEEeCCCHhhHH--HHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLD--ALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~--~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
.++..+|++|+|||++++.+|+ ....|+..+.... ..|+++|+||+|+.......
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~---------------------- 161 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLS---------------------- 161 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCC----------------------
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhH----------------------
Confidence 4567889999999999998875 3346777776652 45899999999996532211
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+....+..++...+ ++|++|||++| .||+++|++|++.+...
T Consensus 162 -----------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g------------~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 162 -----------------IDNKLLIKQILDNVKNPIKFSSFSTLTG------------VGVEQAKITACELLKND 206 (228)
T ss_dssp -----------------HHHHHHHHHHHHHCCSCEEEEECCTTTC------------TTHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcCCCceEEEEecccC------------CCHHHHHHHHHHHHHHH
Confidence 111223677888887 89999999999 99999999999887544
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=1.1e-23 Score=177.16 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCC-----------chhhhcccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL-----------HEEFSIRSLPI 118 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G-----------~e~~~~~~~~~ 118 (289)
+||+|+|++|||||||+++|.+..+...+.++.........+ . .+.+||||| ++.+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 699999999999999999999998876665554433322222 2 489999999 78888888888
Q ss_pred ccC-ccEEEEEEeCCCHhhHHHH-HHHHHH--------h-h--hcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCC
Q 040295 119 SDQ-LTALVMVFNLNDLSTLDAL-KHWVPS--------I-D--LQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESS 185 (289)
Q Consensus 119 ~~~-ad~vIlV~Dv~~~~S~~~l-~~~~~~--------i-~--~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~ 185 (289)
++. ++++++||++.+..+|+.+ ..|... + . .....|+++|+||+|+.... ..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~-------- 140 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------QE-------- 140 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------HH--------
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------HH--------
Confidence 887 8989999999999999887 567642 1 1 12345899999999996421 11
Q ss_pred CCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCe-------EEEeecCCCcccccccCCCCchhHHHHHHHH
Q 040295 186 ADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE-------YIEACASNVDFDKCLSIDGDSQGVERLYGAL 258 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L 258 (289)
.+.+++..++++ +++|||++| .|++++|++|
T Consensus 141 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~l 178 (190)
T 2cxx_A 141 ------------------------------VINFLAEKFEVPLSEIDKVFIPISAKFG------------DNIERLKNRI 178 (190)
T ss_dssp ------------------------------HHHHHHHHHTCCGGGHHHHEEECCTTTC------------TTHHHHHHHH
T ss_pred ------------------------------HHHHHHHHhhhhhhccCCcEEEEecCCC------------CCHHHHHHHH
Confidence 266778877764 799999999 9999999999
Q ss_pred HHhcccCc
Q 040295 259 SAHMWPGM 266 (289)
Q Consensus 259 ~~~~~~~~ 266 (289)
++.+....
T Consensus 179 ~~~~~~~~ 186 (190)
T 2cxx_A 179 FEVIRERQ 186 (190)
T ss_dssp HHHHHHC-
T ss_pred HHhcchhh
Confidence 99876543
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=2.9e-23 Score=174.95 Aligned_cols=157 Identities=17% Similarity=0.059 Sum_probs=118.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh------cccccccc-
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS------IRSLPISD- 120 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~------~~~~~~~~- 120 (289)
+.+||+++|++|||||||+++|.+..+.....++.+.......+... ...+.+|||||++.|. .+...+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 45899999999999999999999877544444544444444444444 3679999999998875 23445554
Q ss_pred -CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 121 -QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 121 -~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
.++++++|+|.++ ++....|+..+... ..|+++|+||+|+. ..+.+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~~-~~piilv~nK~Dl~--------~~~~~--------------------- 130 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLMEM-GANLLLALNKMDLA--------KSLGI--------------------- 130 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHTT-TCCEEEEEECHHHH--------HHTTC---------------------
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHhc-CCCEEEEEEhhhcc--------ccccc---------------------
Confidence 5999999999875 56667788877663 44889999999983 22222
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. .+ +..++...+++++++||+++ .|++++|++|++.+...
T Consensus 131 -----~-~~--------~~~~~~~~~~~~~~~Sa~~~------------~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 131 -----E-ID--------VDKLEKILGVKVVPLSAAKK------------MGIEELKKAISIAVKDK 170 (188)
T ss_dssp -----C-CC--------HHHHHHHHTSCEEECBGGGT------------BSHHHHHHHHHHHHTTC
T ss_pred -----h-HH--------HHHHHHHhCCCeEEEEecCC------------CCHHHHHHHHHHHHHhc
Confidence 1 12 67888888999999999999 99999999999877554
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=3.3e-23 Score=175.54 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=106.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCC----------chhhhccc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL----------HEEFSIRS 115 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G----------~e~~~~~~ 115 (289)
....+||+|+|++|||||||+++|++..+...+.++.+..........++ .+.+||||| ++.|..+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34579999999999999999999999886655555554433222222222 489999999 78888777
Q ss_pred cccccCc---cEEEEEEeCCCHhhHHHHH--HHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcc
Q 040295 116 LPISDQL---TALVMVFNLNDLSTLDALK--HWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDF 190 (289)
Q Consensus 116 ~~~~~~a---d~vIlV~Dv~~~~S~~~l~--~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~ 190 (289)
..+++.+ |++++|||++++.++.... .|+.. ...|+++|+||+|+..... +
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~----~~~p~i~v~nK~Dl~~~~~--------~------------ 152 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY----YGIPVIVIATKADKIPKGK--------W------------ 152 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----TTCCEEEEEECGGGSCGGG--------H------------
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH----cCCCEEEEEECcccCChHH--------H------------
Confidence 7777766 9999999999888887653 34332 3448999999999964211 1
Q ss_pred cCCCCCcccCCCCCCCCCCcHHHHHHHHH-HHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 191 CQSGISETEGSSLLGDEEPSWEIRRSCLE-WCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
....+.+.+ +....+++++++||+++ .|++++|++|.+.+
T Consensus 153 --------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 153 --------------------DKHAKVVRQTLNIDPEDELILFSSETK------------KGKDEAWGAIKKMI 193 (195)
T ss_dssp --------------------HHHHHHHHHHHTCCTTSEEEECCTTTC------------TTHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHcccCCCceEEEEccCC------------CCHHHHHHHHHHHh
Confidence 001111222 33345678999999999 99999999998765
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=2.4e-23 Score=170.44 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh-------hccccccccC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF-------SIRSLPISDQ 121 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~-------~~~~~~~~~~ 121 (289)
+||+++|++|||||||+++|.+..+.. ...++.........+...+ ..+.+|||||++.+ ......+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 589999999999999999999887532 1222222222333333333 36899999999873 3344567889
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCC
Q 040295 122 LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGS 201 (289)
Q Consensus 122 ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
+|++|+|||++++.+... .|+.........|+++|+||+|+... +..
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~p~ilv~nK~Dl~~~--------~~~----------------------- 126 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRRKGKPVILVATKVDDPKH--------ELY----------------------- 126 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHHHTCCEEEEEECCCSGGG--------GGG-----------------------
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHhcCCCEEEEEECcccccc--------hHh-----------------------
Confidence 999999999998644432 22222222234489999999999531 111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 202 SLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
+.+++ ..++ ++++|||+++ .|++++|++|++.+
T Consensus 127 ---------------~~~~~-~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 127 ---------------LGPLY-GLGFGDPIPTSSEHA------------RGLEELLEAIWERL 160 (161)
T ss_dssp ---------------CGGGG-GGSSCSCEECBTTTT------------BSHHHHHHHHHHHC
T ss_pred ---------------HHHHH-hCCCCCeEEEecccC------------CChHHHHHHHHHhC
Confidence 23444 5677 7999999999 99999999998764
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=9.7e-24 Score=177.42 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=106.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc--------cccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR--------SLPI 118 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~--------~~~~ 118 (289)
+++||+|+|++|||||||+++|.+..+.. ...++....+....+..++ ..+.+|||||++.+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 35799999999999999999999876431 1122222233333344343 35899999998653211 1135
Q ss_pred ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC--CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCC
Q 040295 119 SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK--FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGIS 196 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~--~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 196 (289)
++.+|++|+|||++++.+++. ..|+..+.... ..|+++|+||+|+....
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~---------------------------- 131 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGET---------------------------- 131 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCC----------------------------
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcch----------------------------
Confidence 789999999999999988874 46777776543 34899999999994210
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 197 ETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..++...++++++|||+++ .|++++|++|.+.+
T Consensus 132 ---------------------~~~~~~~~~~~~~~SA~~g------------~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 132 ---------------------LGMSEVNGHALIRLSARTG------------EGVDVLRNHLKQSM 164 (172)
T ss_dssp ---------------------CEEEEETTEEEEECCTTTC------------TTHHHHHHHHHHHC
T ss_pred ---------------------hhhhhccCCceEEEeCCCC------------CCHHHHHHHHHHHh
Confidence 0111224678999999999 99999999998865
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=4e-22 Score=168.04 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=112.7
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCC----------chhhhcc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL----------HEEFSIR 114 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G----------~e~~~~~ 114 (289)
.....+||+|+|++|||||||+++|++..+. .+.++.+........... ..+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHH
Confidence 3456689999999999999999999998843 333444433221111112 2478999999 7778777
Q ss_pred ccccccCc---cEEEEEEeCCCHh--hHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 115 SLPISDQL---TALVMVFNLNDLS--TLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 115 ~~~~~~~a---d~vIlV~Dv~~~~--S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
...+++.+ +++++|+|.++.. .+..+..|+... ..|+++|+||+|+.+.. .+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----~~p~i~v~nK~Dl~~~~------~~------------- 151 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----NIPFTIVLTKMDKVKMS------ER------------- 151 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----TCCEEEEEECGGGSCGG------GH-------------
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----CCCEEEEEEChhcCChH------HH-------------
Confidence 77776655 9999999998753 334445565544 34899999999996421 11
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
....+.+..++...+ +++++|||+++ .||+++|++|.+.+.
T Consensus 152 ---------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 152 ---------------------AKKLEEHRKVFSKYGEYTIIPTSSVTG------------EGISELLDLISTLLK 193 (195)
T ss_dssp ---------------------HHHHHHHHHHHHSSCCSCEEECCTTTC------------TTHHHHHHHHHHHHC
T ss_pred ---------------------HHHHHHHHHHHhhcCCCceEEEecCCC------------CCHHHHHHHHHHHhh
Confidence 122233666776644 78999999999 999999999998764
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=7.6e-23 Score=201.69 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=118.9
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEE--------eecCcceEEEEEEEcCCchhhhcccc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWT--------INTKYYTADVSLWMAHLHEEFSIRSL 116 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~--------i~~~~~~~~l~I~Dt~G~e~~~~~~~ 116 (289)
.....+||+++|.+|||||||+++|.+..+...+.+|.+..+.... +...+..+.+.+|||||++.|..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4556799999999999999999999999988888888887776442 22334467899999999999999998
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
.+++.++++|+|||+++. +.+..|+..+..... .|+|+||||+|+.......
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~------------------------ 169 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE------------------------ 169 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC------------------------
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC------------------------
Confidence 899999999999998765 556778888877654 4899999999996432111
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
.+.+..++...+++++++||++| .||+++|++|.+.+...
T Consensus 170 ------------------~~~~~~~~~~~~~~~~~vSA~~g------------~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 170 ------------------QKKINERFPAIENRFHRISCKNG------------DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp ------------------HHHHHHHCGGGTTCEEECCC-----------------CTTHHHHHHHHHTCT
T ss_pred ------------------HHHHHHHHHhcCCceEEEecCcc------------cCHHHHHHHHHHHHhcc
Confidence 12256777778899999999999 99999999999987654
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=3.8e-21 Score=177.30 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=120.2
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh----------ccc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS----------IRS 115 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~----------~~~ 115 (289)
..+.-.|+|+|.+|||||||+|+|++.++................+........+.+|||||+..+. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 3344579999999999999999999998753221111111111111111114679999999985443 445
Q ss_pred cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
..+++.+|++|+|+|++++.+++....|+..+...+ .|+++|+||+|+.... +..
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~-~pvilV~NK~Dl~~~~----~~~-------------------- 141 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLN-KPVIVVINKIDKIGPA----KNV-------------------- 141 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGC-CCEEEEEECGGGSSSG----GGG--------------------
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcC-CCEEEEEECccCCCCH----HHH--------------------
Confidence 577889999999999999999999888888888743 4899999999996211 111
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
...+..+....+ .+++++||++| .|++++|+.|.+.+....
T Consensus 142 ------------------~~~~~~l~~~~~~~~~i~~vSA~~g------------~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 142 ------------------LPLIDEIHKKHPELTEIVPISALKG------------ANLDELVKTILKYLPEGE 184 (308)
T ss_dssp ------------------HHHHHHHHHHCTTCCCEEECBTTTT------------BSHHHHHHHHHHHSCBCC
T ss_pred ------------------HHHHHHHHHhccCCCeEEEEeCCCC------------CCHHHHHHHHHHhCccCC
Confidence 122567777775 67999999999 999999999999876553
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=1.9e-21 Score=175.21 Aligned_cols=154 Identities=12% Similarity=0.018 Sum_probs=115.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc------cccc--c
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS------LPIS--D 120 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~------~~~~--~ 120 (289)
.+||+++|++|||||||+++|++..+.....+..........+... ...+.+|||||++.+.... ..|+ .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 4799999999999999999999987654333444444443344333 3679999999998876532 4555 5
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
.+|++|+|+|+++.++.. .|...+... ..|+++|+||+|+.. .+.+
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~~-~~pvilv~NK~Dl~~--------~~~i---------------------- 128 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEILEM-EKKVILAMTAIDEAK--------KTGM---------------------- 128 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHHTT-TCCEEEEEECHHHHH--------HTTC----------------------
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHHhc-CCCEEEEEECcCCCC--------ccch----------------------
Confidence 899999999999876543 355555543 348999999999832 2222
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
. .+ +..++..++++++++||++| .|++++|+.|.+.+.
T Consensus 129 ----~-~~--------~~~l~~~lg~~vi~~SA~~g------------~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 129 ----K-ID--------RYELQKHLGIPVVFTSSVTG------------EGLEELKEKIVEYAQ 166 (258)
T ss_dssp ----C-BC--------HHHHHHHHCSCEEECCTTTC------------TTHHHHHHHHHHHHH
T ss_pred ----H-HH--------HHHHHHHcCCCEEEEEeeCC------------cCHHHHHHHHHHHhh
Confidence 1 11 67888999999999999999 999999999988653
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=1.5e-21 Score=177.45 Aligned_cols=152 Identities=12% Similarity=0.028 Sum_probs=110.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhh------cccccccc--
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS------IRSLPISD-- 120 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~------~~~~~~~~-- 120 (289)
.+||+++|++|||||||+++|.+..+.....+..........+ .. ...+.+|||||++.|. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 4799999999999999999999876433322322222222223 22 4569999999999876 34455654
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
.+|++|+|||+++.+++. .|...+.. ...|+++|+||+|+.. .+.+
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~-~~~p~ilv~NK~Dl~~--------~~~~---------------------- 125 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---YLTTQLIE-TGIPVTIALNMIDVLD--------GQGK---------------------- 125 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---HHHHHHHH-TCSCEEEEEECHHHHH--------HTTC----------------------
T ss_pred CCCEEEEEecCCchHhHH---HHHHHHHh-cCCCEEEEEEChhhCC--------cCCc----------------------
Confidence 699999999999876543 45555544 3448999999999832 2222
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
. .+ +..++...++++++|||++| .|++++|++|.+.+
T Consensus 126 ----~-~~--------~~~l~~~lg~~vi~~SA~~g------------~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 126 ----K-IN--------VDKLSYHLGVPVVATSALKQ------------TGVDQVVKKAAHTT 162 (272)
T ss_dssp ----C-CC--------HHHHHHHHTSCEEECBTTTT------------BSHHHHHHHHHHSC
T ss_pred ----H-HH--------HHHHHHHcCCCEEEEEccCC------------CCHHHHHHHHHHHH
Confidence 1 12 67888889999999999999 99999999998865
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=2.2e-21 Score=168.03 Aligned_cols=166 Identities=12% Similarity=0.064 Sum_probs=107.7
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceE--EeeEEeecCcceEEEEEEEcCC----------chhhh
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELL--VNGWTINTKYYTADVSLWMAHL----------HEEFS 112 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~--~~~~~i~~~~~~~~l~I~Dt~G----------~e~~~ 112 (289)
.....+||+|+|.+|||||||+++|++..+......+.+.. .....+. ......+.+||||| ++.|.
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34567899999999999999999999987422222222221 1122222 12235689999999 45666
Q ss_pred ccccccccC---ccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 113 IRSLPISDQ---LTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 113 ~~~~~~~~~---ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
.+...|++. +|++|+|+|.+++.+.. ...|+..+.. ...|+++|+||+|+.... .....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~-~~~p~i~v~nK~Dl~~~~-----~~~~~----------- 165 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP-TGKPIHSLLTKCDKLTRQ-----ESINA----------- 165 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-GCCCEEEEEECGGGSCHH-----HHHHH-----------
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-cCCCEEEEEeccccCChh-----hHHHH-----------
Confidence 666666655 78899999998754422 2345555554 334899999999996421 10001
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHH-------cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE-------HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.+...+.+.. .+++++++||+++ .|++++|++|.+.+
T Consensus 166 ------------------------~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g------------~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 166 ------------------------LRATQKSLDAYRDAGYAGKLTVQLFSALKR------------TGLDDAHALIESWL 209 (223)
T ss_dssp ------------------------HHHHHHHHHHHHHHTCCSCEEEEEEBTTTT------------BSHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHhhhhcccCCCCeEEEeecCCC------------cCHHHHHHHHHHhc
Confidence 1112222222 4578999999999 99999999999877
Q ss_pred ccC
Q 040295 263 WPG 265 (289)
Q Consensus 263 ~~~ 265 (289)
...
T Consensus 210 ~~~ 212 (223)
T 4dhe_A 210 RPA 212 (223)
T ss_dssp C--
T ss_pred Ccc
Confidence 544
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=3.2e-21 Score=174.95 Aligned_cols=156 Identities=15% Similarity=0.066 Sum_probs=114.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcc----------ccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIR----------SLP 117 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~----------~~~ 117 (289)
+.++|+++|.+|||||||+|+|++..+.....++...+.....+...+ ..+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 358999999999999999999999876444444444444444444443 35889999999887632 122
Q ss_pred cc--cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCC
Q 040295 118 IS--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGI 195 (289)
Q Consensus 118 ~~--~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 195 (289)
|+ +.+|++|+|+|.++.+....+..|+... ..|+++|+||+|+.. .+.+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----~~p~ivv~NK~Dl~~--------~~~~----------------- 130 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL----GIPCIVALNMLDIAE--------KQNI----------------- 130 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----TCCEEEEEECHHHHH--------HTTE-----------------
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc----CCCEEEEEECccchh--------hhhH-----------------
Confidence 32 6899999999999877666555554443 348999999999842 1111
Q ss_pred CcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 196 SETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
..+ ...++...+++++++||++| .|++++|++|.+.+..
T Consensus 131 ----------~~~--------~~~l~~~lg~~~i~~SA~~g------------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 131 ----------RIE--------IDALSARLGCPVIPLVSTRG------------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp ----------EEC--------HHHHHHHHTSCEEECCCGGG------------HHHHHHHHHHHTCCCC
T ss_pred ----------HHH--------HHHHHHhcCCCEEEEEcCCC------------CCHHHHHHHHHHHHhc
Confidence 011 56788888999999999999 9999999999886643
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=2.4e-21 Score=174.41 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc----------cccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI----------RSLPIS 119 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~----------~~~~~~ 119 (289)
.||+++|.+|||||||+|+|.+..+.....++.+.+.....+...+ ..+.+|||||+..+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999875444445555444444444443 3799999999987764 334566
Q ss_pred --cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 120 --DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 120 --~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
+.+|++|+|+|+++.+++..+..|+..+ ..|+++|+||+|+.. .+.+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~----~~pvilv~NK~Dl~~--------~~~~------------------- 128 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFEL----GKPVVVALNMMDIAE--------HRGI------------------- 128 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTTS----CSCEEEEEECHHHHH--------HTTC-------------------
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHHc----CCCEEEEEEChhcCC--------cCCc-------------------
Confidence 8899999999999987776665554332 348999999999842 1111
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
... ...++...+++++++||++| .|++++|+.|.+.
T Consensus 129 --------~~~--------~~~l~~~lg~~vi~~SA~~g------------~gi~el~~~i~~~ 164 (256)
T 3iby_A 129 --------SID--------TEKLESLLGCSVIPIQAHKN------------IGIPALQQSLLHC 164 (256)
T ss_dssp --------EEC--------HHHHHHHHCSCEEECBGGGT------------BSHHHHHHHHHTC
T ss_pred --------HHH--------HHHHHHHcCCCEEEEECCCC------------CCHHHHHHHHHhh
Confidence 011 56678888999999999999 9999999999886
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=7.7e-22 Score=170.62 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=105.2
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccC-
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ- 121 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~- 121 (289)
....+||+|+|++|||||||+++|.+..+... +.++.+. ......+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 34568999999999999999999999887542 2222221 1234579999999999998888888877
Q ss_pred ---ccEEEEEEeCC-CHhhHHHHHHHHHHhhhc------CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCccc
Q 040295 122 ---LTALVMVFNLN-DLSTLDALKHWVPSIDLQ------KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFC 191 (289)
Q Consensus 122 ---ad~vIlV~Dv~-~~~S~~~l~~~~~~i~~~------~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~ 191 (289)
++++|+|||++ ++.+|..+..|+..+... ...|+++|+||+|+....... +
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~------------------ 140 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS-K------------------ 140 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH-H------------------
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH-H------------------
Confidence 89999999999 899999999998877543 345899999999997543211 0
Q ss_pred CCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCC
Q 040295 192 QSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNV 236 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~ 236 (289)
....+...+..++...+++|+++||+++
T Consensus 141 -----------------~~~~l~~~~~~~~~~~~~~~~~~Sa~~~ 168 (218)
T 1nrj_B 141 -----------------IKDALESEIQKVIERRKKSLNEVERKIN 168 (218)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred -----------------HHHHHHHHHHHHHHHHhccccccccccc
Confidence 1112334467788888888999999988
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=1.2e-20 Score=170.28 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=117.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc------cccccc--
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI------RSLPIS-- 119 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~------~~~~~~-- 119 (289)
+.+||+++|++|||||||+++|.+..+.....++.+.......+...+ ..+.+|||||+..+.. +...|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 357999999999999999999999877544555555555444444443 3599999999988765 344554
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
..+|++|+|+|.++.+ ....|...+......|+++|+||+|+. ..+.+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~~~p~ilv~NK~Dl~--------~~~~~--------------------- 127 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEMEVKNIILVLNKFDLL--------KKKGA--------------------- 127 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTTCCSEEEEEECHHHH--------HHHTC---------------------
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcCCCCEEEEEEChhcC--------ccccc---------------------
Confidence 6899999999998863 333455555555546899999999984 22222
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.. + ...++...+++++++||++| .|+.++|+.+...+-
T Consensus 128 -----~~-~--------~~~l~~~lg~~~~~~Sa~~g------------~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 128 -----KI-D--------IKKMRKELGVPVIPTNAKKG------------EGVEELKRMIALMAE 165 (271)
T ss_dssp -----CC-C--------HHHHHHHHSSCEEECBGGGT------------BTHHHHHHHHHHHHH
T ss_pred -----HH-H--------HHHHHHHcCCcEEEEEeCCC------------CCHHHHHHHHHHHHh
Confidence 11 1 67788888999999999999 999999999988653
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=1.4e-20 Score=181.22 Aligned_cols=162 Identities=11% Similarity=0.040 Sum_probs=111.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCc----------hhhhcccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLH----------EEFSIRSL 116 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~----------e~~~~~~~ 116 (289)
..+||+++|++|||||||+|+|++.++. ....++.+.+.....+..++. .+.+|||||+ |.|..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4589999999999999999999998763 122222222333333333433 5899999998 55654433
Q ss_pred -ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchh-HHHHHhhhcccCCCCCcccCCC
Q 040295 117 -PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHA-EYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 117 -~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
.+++.+|++|+|||++++.+++.. .|+..+.. ...|+++|+||+|+.+...... +..+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~---------------- 313 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-AGKAVVIVVNKWDAVDKDESTMKEFEENI---------------- 313 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-TTCEEEEEEECGGGSCCCTTHHHHHHHHH----------------
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-cCCcEEEEEECccCCCcchHHHHHHHHHH----------------
Confidence 467889999999999998888876 47776654 3458999999999975422110 111111
Q ss_pred CCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
...+....+++++++||++| .|++++|+.+.+.+.
T Consensus 314 ----------------------~~~l~~~~~~~~~~~SA~tg------------~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 314 ----------------------RDHFQFLDYAPILFMSALTK------------KRIHTLMPAIIKASE 348 (436)
T ss_dssp ----------------------HHHCGGGTTSCEEECCTTTC------------TTGGGHHHHHHHHHH
T ss_pred ----------------------HHhcccCCCCCEEEEecccC------------CCHHHHHHHHHHHHH
Confidence 23334445689999999999 999999999987664
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=1.3e-19 Score=176.79 Aligned_cols=157 Identities=15% Similarity=0.048 Sum_probs=95.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc--------ccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS--------LPI 118 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~--------~~~ 118 (289)
.++||+|+|++|||||||+|+|++.++. ....++.+.++....+..++ +.+.+|||||+..+.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4589999999999999999999988642 22222222333333333343 569999999998765433 346
Q ss_pred ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 119 SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
++.+|++|+|||++++.+++.+..+...+......|+|+|+||+|+.+... +
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~--------~-------------------- 361 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANAD--------A-------------------- 361 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTH--------H--------------------
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccc--------h--------------------
Confidence 889999999999999988864433333333333569999999999964311 0
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+.+......+++++||++| .|++++|++|.+.+.
T Consensus 362 -----------------~~~~l~~~~~~~~i~vSAktg------------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 362 -----------------LIRAIADGTGTEVIGISALNG------------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp -----------------HHHHHHHHHTSCEEECBTTTT------------BSHHHHHHHHTHHHH
T ss_pred -----------------hHHHHHhcCCCceEEEEECCC------------CCHHHHHHHHHHHHh
Confidence 012333332368999999999 999999999998775
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=4.8e-19 Score=163.02 Aligned_cols=154 Identities=21% Similarity=0.177 Sum_probs=106.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCchh--------hhccccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLHEE--------FSIRSLPIS 119 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~--------~~~~~~~~~ 119 (289)
.+|+|+|.+|||||||+|+|++.++... ...|....... .+. .....+.+|||||+.. +......++
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~-i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRG-ILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE-EEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEE-EEE--eCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 5799999999999999999999887532 11222211111 112 2246799999999875 445556778
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHH-HHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWV-PSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~-~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
+.+|++++|||++++.+.. ..|+ ..+.... ..|+++|+||+|+.... . . +
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~-----~-~-~------------------- 136 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYP-----E-E-A------------------- 136 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSH-----H-H-H-------------------
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCch-----H-H-H-------------------
Confidence 9999999999999875443 3454 4555442 35899999999996420 0 0 1
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcC-CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHR-IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
...+..+ .+ .+++++||++| .|++++++.|...+...
T Consensus 137 ----------------~~~~~~~---~~~~~~~~iSA~~g------------~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 137 ----------------MKAYHEL---LPEAEPRMLSALDE------------RQVAELKADLLALMPEG 174 (301)
T ss_dssp ----------------HHHHHHT---STTSEEEECCTTCH------------HHHHHHHHHHHTTCCBC
T ss_pred ----------------HHHHHHh---cCcCcEEEEeCCCC------------CCHHHHHHHHHHhcccC
Confidence 1113333 33 47999999999 99999999999877544
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.80 E-value=1.1e-18 Score=163.88 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=114.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-C-CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc---------cc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDA-S-DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI---------RS 115 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~-~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~---------~~ 115 (289)
...++|+++|++|||||||+++|.+..+... + ..|...... .+... ...+.+|||||...+.. ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG--QFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE--EEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEE--EEEec--CceEEEEeCCCccccchhhhhHHHHHHH
Confidence 3568999999999999999999998875321 1 122222222 22222 35799999999854321 11
Q ss_pred cccccCccEEEEEEeCCCHh--hHHHHHHHHHHhhhcC-CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 116 LPISDQLTALVMVFNLNDLS--TLDALKHWVPSIDLQK-FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~--S~~~l~~~~~~i~~~~-~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
..+...+|++++|+|++++. +++....|+..+.... ..|+++|+||+|+... +.+
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~--------~~~-------------- 298 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE--------ENI-------------- 298 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH--------HHH--------------
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh--------HHH--------------
Confidence 13345699999999999887 7888889998887654 5699999999999631 111
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
..+..++...+++++++||++| +|++++|++|++.+..
T Consensus 299 ----------------------~~~~~~~~~~~~~~~~iSA~~g------------~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 299 ----------------------KRLEKFVKEKGLNPIKISALKG------------TGIDLVKEEIIKTLRP 336 (357)
T ss_dssp ----------------------HHHHHHHHHTTCCCEECBTTTT------------BTHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHhcCCCeEEEeCCCC------------cCHHHHHHHHHHHHHH
Confidence 1145666678899999999999 9999999999987743
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.79 E-value=1.5e-18 Score=165.42 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=118.8
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeE------------Eee----------cCcceEEEEEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGW------------TIN----------TKYYTADVSLW 103 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~------------~i~----------~~~~~~~l~I~ 103 (289)
..+.++|+++|++|+|||||+++|++...... .+...... ... .......+.+|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 80 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI 80 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cCccccceeeccccccccceecccccccccccccccccceEEEE
Confidence 34568999999999999999999998654321 11100000 000 01123679999
Q ss_pred EcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhccc
Q 040295 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREE 183 (289)
Q Consensus 104 Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~ 183 (289)
||||++.|......+++.+|++|+|+|+++..++.....|+..+...+.+|+++|+||+|+.+. +...
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~-----~~~~------- 148 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK-----EEAL------- 148 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-----HHHH-------
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch-----HHHH-------
Confidence 9999999988888889999999999999988778888888887777777789999999999642 1111
Q ss_pred CCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHH
Q 040295 184 SSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSA 260 (289)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~ 260 (289)
+..+.+.+++... +++++++||++| .|+++++++|.+
T Consensus 149 ----------------------------~~~~~i~~~l~~~~~~~~~ii~vSA~~g------------~gi~~L~~~l~~ 188 (403)
T 3sjy_A 149 ----------------------------SQYRQIKQFTKGTWAENVPIIPVSALHK------------INIDSLIEGIEE 188 (403)
T ss_dssp ----------------------------HHHHHHHHHHTTSTTTTCCEEECBTTTT------------BSHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHhhCCCCCEEEEEECCCC------------cChHHHHHHHHH
Confidence 1112233444333 467999999999 999999999998
Q ss_pred hcccC
Q 040295 261 HMWPG 265 (289)
Q Consensus 261 ~~~~~ 265 (289)
.+.+.
T Consensus 189 ~l~~~ 193 (403)
T 3sjy_A 189 YIKTP 193 (403)
T ss_dssp HSCCC
T ss_pred hCCCC
Confidence 66443
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=6.6e-19 Score=169.65 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=99.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchh---------hhccccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEE---------FSIRSLPIS 119 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~---------~~~~~~~~~ 119 (289)
.+|+|+|.+|||||||+|+|++.... ....+..+.++....+...+ ..+.+|||||++. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 58999999999999999999988743 12222222233333333343 3589999999764 233445678
Q ss_pred cCccEEEEEEeCCCHhhHH--HHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 120 DQLTALVMVFNLNDLSTLD--ALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~--~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
+.+|++|+|||++++.+.. .+..|+.. ...|+++|+||+|+.. ....
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~----~~~p~ilv~NK~D~~~--------~~~~------------------- 128 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK----STVDTILVANKAENLR--------EFER------------------- 128 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH----HTCCEEEEEESCCSHH--------HHHH-------------------
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH----cCCCEEEEEeCCCCcc--------ccHH-------------------
Confidence 9999999999998765543 23344432 2458999999999831 1001
Q ss_pred ccCCCCCCCCCCcHHHHHHH-HHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 198 TEGSSLLGDEEPSWEIRRSC-LEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+ .++. ..++ +++++||++| .|+.++|++|.+.+.
T Consensus 129 ------------------~~~~~~~-~lg~~~~~~iSA~~g------------~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 129 ------------------EVKPELY-SLGFGEPIPVSAEHN------------INLDTMLETIIKKLE 165 (439)
T ss_dssp ------------------HTHHHHG-GGSSCSCEECBTTTT------------BSHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHH-hcCCCCEEEEeccCC------------CCHHHHHHHHHHhcc
Confidence 02 3444 4677 7999999999 999999999998764
No 131
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=5e-18 Score=162.05 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=106.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--CcceEEeeEEeec-------------C--c----ceEEEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN---FEDASDS--SSELLVNGWTINT-------------K--Y----YTADVSL 102 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~---~~~~~~~--t~~~~~~~~~i~~-------------~--~----~~~~l~I 102 (289)
.+.++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. . + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 345899999999999999999998543 3333333 5544444333311 0 1 1267999
Q ss_pred EEcCCchhhhccccccccCccEEEEEEeCC----CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHh
Q 040295 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLN----DLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRL 178 (289)
Q Consensus 103 ~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~----~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~ 178 (289)
|||||++.|.......+..+|++|+|+|++ .+++++.+..| ...+.+|+++|+||+|+......
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l~~~~iivv~NK~Dl~~~~~~-------- 153 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EILGIDKIIIVQNKIDLVDEKQA-------- 153 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHTTCCCEEEEEECTTSSCTTTT--------
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHcCCCeEEEEEEccCCCCHHHH--------
Confidence 999999999876667778899999999998 46677766543 33444589999999999643110
Q ss_pred hhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHH---cCCeEEEeecCCCcccccccCCCCchhHHHHH
Q 040295 179 LKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE---HRIEYIEACASNVDFDKCLSIDGDSQGVERLY 255 (289)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~ 255 (289)
.+..+++.+++.. .+++++++||++| .|+++++
T Consensus 154 --------------------------------~~~~~~i~~~l~~~~~~~~~~i~vSA~~g------------~gi~~L~ 189 (408)
T 1s0u_A 154 --------------------------------EENYEQIKEFVKGTIAENAPIIPISAHHE------------ANIDVLL 189 (408)
T ss_dssp --------------------------------TTHHHHHHHHHTTSTTTTCCEEEC------------------CHHHHH
T ss_pred --------------------------------HHHHHHHHHHHhhcCCCCCeEEEeeCCCC------------CCHHHHH
Confidence 0111224555554 3578999999999 9999999
Q ss_pred HHHHHhccc
Q 040295 256 GALSAHMWP 264 (289)
Q Consensus 256 ~~L~~~~~~ 264 (289)
++|.+.+..
T Consensus 190 ~~l~~~i~~ 198 (408)
T 1s0u_A 190 KAIQDFIPT 198 (408)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhCCC
Confidence 999986654
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=2.7e-19 Score=173.12 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=107.9
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCC----------chhhhcc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHL----------HEEFSIR 114 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G----------~e~~~~~ 114 (289)
....+||+++|.+|||||||+++|++.+.. ....++.+.+.....+..++ ..+.+||||| ++.|..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 345689999999999999999999987632 12222222222223333333 3689999999 7888766
Q ss_pred cc-ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 115 SL-PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 115 ~~-~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
.. .+++.+|++|+|+|+++..+. ....|...+.. ...|+++|+||+|+.......
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~---------------------- 325 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE-AGKAVVIVVNKWDAVDKDEST---------------------- 325 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH-TTCEEEEEEECGGGSCCCSSH----------------------
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH-cCCCEEEEEEChhcCCCchHH----------------------
Confidence 54 367899999999999875432 22345555544 345899999999997532211
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHH-cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTE-HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..+..+.+...... .+++++++||++| .|++++|+.|.+.+
T Consensus 326 ----------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g------------~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 326 ----------------MKEFEENIRDHFQFLDYAPILFMSALTK------------KRIHTLMPAIIKAS 367 (456)
T ss_dssp ----------------HHHHHHHHHHHCGGGTTSCEEECCTTTC------------TTGGGHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHhcccCCCCCEEEEcCCCC------------cCHHHHHHHHHHHH
Confidence 11111122322222 2478999999999 99999999998865
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=1.6e-19 Score=173.56 Aligned_cols=159 Identities=13% Similarity=0.032 Sum_probs=108.9
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccc-------c
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSL-------P 117 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~-------~ 117 (289)
....++|+|+|+.|+|||||+++|++..+... ..+....+.....+...+. ..+.+|||||++.|..+.. .
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 34568999999999999999999999886321 1122222222222222222 2789999999998876532 3
Q ss_pred cccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCc
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISE 197 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (289)
+++.+|++|+|||++..... ..|+..+... ..|+++|+||+|+......
T Consensus 110 ~l~~aD~vllVvD~~~~~~~---~~~l~~l~~~-~~piIvV~NK~Dl~~~~~~--------------------------- 158 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPYE---DDVVNLFKEM-EIPFVVVVNKIDVLGEKAE--------------------------- 158 (423)
T ss_dssp HHTSCSEEEEECSSSCCHHH---HHHHHHHHHT-TCCEEEECCCCTTTTCCCT---------------------------
T ss_pred HHhcCCEEEEEEeCCChHHH---HHHHHHHHhc-CCCEEEEEeCcCCCCccHH---------------------------
Confidence 68889999999999544333 4566666554 3479999999999643211
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 198 TEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+.+.+++..++++++++||++| .|++++|++|.+.+...
T Consensus 159 -----------------~~~~~l~~~~g~~v~~vSAktg------------~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 159 -----------------ELKGLYESRYEAKVLLVSALQK------------KGFDDIGKTISEILPGD 197 (423)
T ss_dssp -----------------HHHHHSSCCTTCCCCCCSSCCT------------TSTTTHHHHHHHHSCCC
T ss_pred -----------------HHHHHHHHHcCCCEEEEECCCC------------CCHHHHHHHHHHhhhhh
Confidence 1256677778899999999999 99999999999988554
No 134
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5e-19 Score=149.63 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=86.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccC--
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDA---SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQ-- 121 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~-- 121 (289)
...++|+|+|++|||||||+++|.+..+... +.++.+. ....+.+.+|||||++.+...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4568999999999999999999999886431 1222211 1134568999999999998777777765
Q ss_pred --ccEEEEEEeCC-CHhhHHHHHHHHHHhhhc------CCCeEEEEeeCCCCCCCC
Q 040295 122 --LTALVMVFNLN-DLSTLDALKHWVPSIDLQ------KFEILLCIGNKVDLLPGH 168 (289)
Q Consensus 122 --ad~vIlV~Dv~-~~~S~~~l~~~~~~i~~~------~~~~iivvgnK~Dl~~~~ 168 (289)
+|++|+|||++ ++.+|..+..|+..+... ...|+++|+||+|+....
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 999999999988776432 345899999999997644
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.77 E-value=7.3e-19 Score=164.72 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=114.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCC-CCCC-CCcceEEeeEEeecCcceEEEEEEEcCCchh----hhcccccccc---
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFE-DASD-SSSELLVNGWTINTKYYTADVSLWMAHLHEE----FSIRSLPISD--- 120 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~-~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----~~~~~~~~~~--- 120 (289)
.+|+|+|.+|||||||+++|++..+. ..+. .|.......+.+.. ...+.+|||||+.. +..+...+++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~---~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD---GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS---SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC---CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 57999999999999999999987642 1222 33333333233222 14689999999643 3334444544
Q ss_pred CccEEEEEEeCCC---HhhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 121 QLTALVMVFNLND---LSTLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 121 ~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
.++++|+|+|+++ +.+++.+..|+..+.... ..|+++|+||+|+.. .+..
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~--------~~e~--------------- 292 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--------AAEN--------------- 292 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT--------HHHH---------------
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC--------CHHH---------------
Confidence 4999999999998 889999999999988754 448999999999953 1111
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+..++...+ ++++++||+++ .|+++++.+|.+.+...
T Consensus 293 -----------------------~~~l~~~l~~~~~v~~iSA~tg------------~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 293 -----------------------LEAFKEKLTDDYPVFPISAVTR------------EGLRELLFEVANQLENT 331 (342)
T ss_dssp -----------------------HHHHHHHCCSCCCBCCCSSCCS------------STTHHHHHHHHHHHTSC
T ss_pred -----------------------HHHHHHHhhcCCCEEEEECCCC------------cCHHHHHHHHHHHHhhC
Confidence 456666665 68999999999 99999999999987544
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=3.2e-19 Score=171.71 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=98.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEE--eeEEeecCcceEEEEEEEcCCch--------hhhccccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLV--NGWTINTKYYTADVSLWMAHLHE--------EFSIRSLPIS 119 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~--~~~~i~~~~~~~~l~I~Dt~G~e--------~~~~~~~~~~ 119 (289)
++|+|+|.+|||||||+|+|.+..+. ....+.+.+. ....+... ...+.+|||||++ .+......++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~--~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWL--NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTC--SSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEEC--CceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 68999999999999999999987753 2233344332 22233333 3468999999985 5666667788
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCccc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETE 199 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
+.+|++|+|+|++++.++.. .|+..+-.....|+++|+||+|+... +..
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~~~~~pvilv~NK~D~~~~--------~~~--------------------- 129 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILYRTKKPVVLAVNKLDNTEM--------RAN--------------------- 129 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHTTCCSCEEEEEECCCC-------------C---------------------
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHHcCCCEEEEEECccCccc--------hhh---------------------
Confidence 99999999999998766654 34433333345589999999999531 000
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 200 GSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
+.++. ..++ +++++||++| .|+.++++++...+.+
T Consensus 130 -----------------~~~~~-~lg~~~~~~iSA~~g------------~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 130 -----------------IYDFY-SLGFGEPYPISGTHG------------LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp -----------------CCSSG-GGSSCCCEECBTTTT------------BTHHHHHHHHHHTGGG
T ss_pred -----------------HHHHH-HcCCCCeEEEeCcCC------------CChHHHHHHHHHhcCc
Confidence 11122 2455 6899999999 9999999999987753
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=1.1e-17 Score=153.65 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=107.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCch---------hhhcccccc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLHE---------EFSIRSLPI 118 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e---------~~~~~~~~~ 118 (289)
.+|+|+|++|||||||++++++..+... ...+........ +... ...+.+|||||++ .+......+
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi-~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI-HTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE-EEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE-EEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 5799999999999999999999876321 111221111111 2222 3578999999987 344445677
Q ss_pred ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 119 SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
++.+|++++|+|.++ +.....|+...-.....|+++|+||+|+... .
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-------~----------------------- 132 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-------K----------------------- 132 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-------H-----------------------
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-------H-----------------------
Confidence 889999999999976 3344445543333334589999999999531 0
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
......+..++..+++ .++++||+++ .|++++++.|...+.+.
T Consensus 133 ------------~~~~~~l~~l~~~~~~~~~i~iSA~~g------------~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 133 ------------ADLLPHLQFLASQMNFLDIVPISAETG------------LNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp ------------HHHHHHHHHHHTTSCCSEEEECCTTTT------------TTHHHHHHHHHTTCCBC
T ss_pred ------------HHHHHHHHHHHHhcCcCceEEEECCCC------------CCHHHHHHHHHHhCCcC
Confidence 1111225667776776 6999999999 99999999999876543
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=149.70 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=104.2
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcceEEeeEEeecCcceEEEEEEEcCCc-----------hhh
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDS--SSELLVNGWTINTKYYTADVSLWMAHLH-----------EEF 111 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~--t~~~~~~~~~i~~~~~~~~l~I~Dt~G~-----------e~~ 111 (289)
.....+||+|+|++|||||||+++|++..+.....+ +.........+...+ ..+.||||||. +.+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 344568999999999999999999999887544333 222222222333332 46899999993 344
Q ss_pred hccccccccCccEEEEEEeCCCHhh--HHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 112 SIRSLPISDQLTALVMVFNLNDLST--LDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~~~S--~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
......+++++|++|+|+|+++... ...+..+...+......|+++|+||+|+...... ...+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~i----------- 167 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNL----HDYL----------- 167 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------------------
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccH----HHHH-----------
Confidence 4444556678999999999875433 3333333333332223489999999999653211 1111
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
....+.++.++...+..|+.++...++-. ...++.++|..+.+.+..
T Consensus 168 ---------------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 168 ---------------------REAPEDIQDLMDIFGDRYCALNNKATGAE-------QEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ------------------------CHHHHHHHHHHSSSEEECCTTCCHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HhchHHHHHHHHHcCCEEEEEECCCCccc-------cHHHHHHHHHHHHHHHHH
Confidence 00012367788888888887766532000 116899999988776643
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=8.9e-18 Score=149.81 Aligned_cols=169 Identities=12% Similarity=0.079 Sum_probs=102.8
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-cceEEeeEEeecCcceEEEEEEEcCCchhhhccc--------
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVN-FEDASDSS-SELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS-------- 115 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~-~~~~~~~t-~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~-------- 115 (289)
....++|+|+|++|||||||+++|++.. +...+.++ .........+... ...+.||||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3456899999999999999999999887 43333332 2222222222223 2469999999987653322
Q ss_pred ---cccccCccEEEEEEeCCCHhh-HHHHHHHHHHhhhc--CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 116 ---LPISDQLTALVMVFNLNDLST-LDALKHWVPSIDLQ--KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 116 ---~~~~~~ad~vIlV~Dv~~~~S-~~~l~~~~~~i~~~--~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
..+++.+|++|+|||+++... ...+..|+..+... ..+++++++||+|+... . ....+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~----~~~~i~---------- 161 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-S----LMDYMH---------- 161 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-C----HHHHHH----------
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-c----HHHHHH----------
Confidence 225788999999999986222 22333444443221 23456666669999632 1 111110
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCe---E--EEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIE---Y--IEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.. .. ..+..++...+.. + +++||+++ .|++++|..|.+.+..
T Consensus 162 ---------------~~--~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~------------~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 162 ---------------DS--DN----KALSKLVAACGGRICAFNNRAEGSNQD------------DQVKELMDCIEDLLME 208 (260)
T ss_dssp ---------------HC--CC----HHHHHHHHHTTTCEEECCTTCCHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred ---------------hc--ch----HHHHHHHHHhCCeEEEecCcccccccH------------HHHHHHHHHHHHHHHh
Confidence 00 00 1134455554432 2 78999999 9999999999987654
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.75 E-value=2.1e-18 Score=155.96 Aligned_cols=161 Identities=9% Similarity=0.070 Sum_probs=96.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC-CCC-------CCCcceEEeeEEeecCcceEEEEEEEcCCch-------hhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE-DAS-------DSSSELLVNGWTINTKYYTADVSLWMAHLHE-------EFS 112 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~-------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e-------~~~ 112 (289)
..++|+|+|.+|+|||||+|++++.+.. ..+ .+|.+.......+..++..+.+.+|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3589999999999999999998876643 333 5677777777777777777899999999973 222
Q ss_pred ccc-------ccccc-------------CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchh
Q 040295 113 IRS-------LPISD-------------QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHA 172 (289)
Q Consensus 113 ~~~-------~~~~~-------------~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~ 172 (289)
.+. ..|++ .+|+++++++.+.......-..++..+.. ..|+|+|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~----- 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTP----- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--TSCEEEEESSGGGSCH-----
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--cCCEEEEEeccCCCCH-----
Confidence 221 22222 37789999976642222222335555554 4589999999999642
Q ss_pred HHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHH
Q 040295 173 EYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVE 252 (289)
Q Consensus 173 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~ 252 (289)
.+ + ......+.+.+..++++++++||+++ +|+.
T Consensus 160 -~e--~--------------------------------~~~~~~i~~~l~~~~i~v~~~sa~~~------------~~~~ 192 (274)
T 3t5d_A 160 -EE--C--------------------------------QQFKKQIMKEIQEHKIKIYEFPETDD------------EEEN 192 (274)
T ss_dssp -HH--H--------------------------------HHHHHHHHHHHHHTTCCCCCC---------------------
T ss_pred -HH--H--------------------------------HHHHHHHHHHHHHcCCeEEcCCCCCC------------hhHH
Confidence 11 1 11223356667778999999999999 9999
Q ss_pred HHHHHHHHhc
Q 040295 253 RLYGALSAHM 262 (289)
Q Consensus 253 ~l~~~L~~~~ 262 (289)
+++++|...+
T Consensus 193 ~l~~~l~~~~ 202 (274)
T 3t5d_A 193 KLVKKIKDRL 202 (274)
T ss_dssp --CHHHHHTC
T ss_pred HHHHHHhcCC
Confidence 9999998865
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.75 E-value=1.4e-17 Score=158.99 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=113.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--CcceEEeeEEeecC---------------c----ceEEEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVN---FEDASDS--SSELLVNGWTINTK---------------Y----YTADVSLW 103 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~---~~~~~~~--t~~~~~~~~~i~~~---------------~----~~~~l~I~ 103 (289)
+.++|+++|+.++|||||+++|.+.. +..+..+ |+...+....+... + ....+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 45899999999999999999998543 2223333 55544443333210 1 12679999
Q ss_pred EcCCchhhhccccccccCccEEEEEEeCC----CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhh
Q 040295 104 MAHLHEEFSIRSLPISDQLTALVMVFNLN----DLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLL 179 (289)
Q Consensus 104 Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~----~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~ 179 (289)
||||++.|.......+..+|++|+|+|++ .+++++.+..| ...+.+|+++|+||+|+... ....
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~~~~iivviNK~Dl~~~------~~~~-- 156 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIGQKNIIIAQNKIELVDK------EKAL-- 156 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHTCCCEEEEEECGGGSCH------HHHH--
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcCCCcEEEEEECccCCCH------HHHH--
Confidence 99999999776666677889999999998 45677666543 23345689999999999641 1100
Q ss_pred hcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHH---cCCeEEEeecCCCcccccccCCCCchhHHHHHH
Q 040295 180 KREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTE---HRIEYIEACASNVDFDKCLSIDGDSQGVERLYG 256 (289)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~ 256 (289)
+..+++.+++.. .+++++++||+++ .|++++++
T Consensus 157 --------------------------------~~~~~i~~~l~~~~~~~~~~i~vSA~~g------------~gi~~L~~ 192 (410)
T 1kk1_A 157 --------------------------------ENYRQIKEFIEGTVAENAPIIPISALHG------------ANIDVLVK 192 (410)
T ss_dssp --------------------------------HHHHHHHHHHTTSTTTTCCEEECBTTTT------------BSHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHhcCcCCCeEEEeeCCCC------------CCHHHHHH
Confidence 111224555554 3578999999999 99999999
Q ss_pred HHHHhcccC
Q 040295 257 ALSAHMWPG 265 (289)
Q Consensus 257 ~L~~~~~~~ 265 (289)
+|.+.+...
T Consensus 193 ~l~~~~~~p 201 (410)
T 1kk1_A 193 AIEDFIPTP 201 (410)
T ss_dssp HHHHHSCCC
T ss_pred HHHHhCCCC
Confidence 999866543
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.74 E-value=1.1e-17 Score=155.73 Aligned_cols=131 Identities=12% Similarity=0.175 Sum_probs=94.1
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCC----------CHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLN----------DLSTLDALKHWVPSIDLQ---KFEILLCIGNKVD 163 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~----------~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~D 163 (289)
.+.+++|||+||++++.++..|+++++++|||||++ +..+|+....|+..+... ...|++|+|||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 478999999999999999999999999999999654 778888888888887654 3349999999999
Q ss_pred CCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHH----------HHHcCCeEEEeec
Q 040295 164 LLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEW----------CTEHRIEYIEACA 233 (289)
Q Consensus 164 l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ie~Sa 233 (289)
+.. +++.+.....+=|++ .| .+ ...+.+..+ +...++.+++|||
T Consensus 246 L~~---------~ki~~~~l~~~fp~y--------~g-----~~----~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA 299 (327)
T 3ohm_A 246 LLE---------EKIMYSHLVDYFPEY--------DG-----PQ----RDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 299 (327)
T ss_dssp HHH---------HHTTTSCGGGTCTTC--------CS-----CS----SCHHHHHHHHHHHHHSSCTTTTSCEEEEECCT
T ss_pred hhh---------hhhccchHhhhchhc--------cC-----CC----CCHHHHHHHHHHHHHhhcccccCCcEEEEEEe
Confidence 942 222111111122222 01 00 011235555 2345677899999
Q ss_pred CCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 234 SNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+++ .||+.+|.++.+.++..
T Consensus 300 ~d~------------~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 300 TDT------------ENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TCH------------HHHHHHHHHHHHHHHHT
T ss_pred ecC------------HHHHHHHHHHHHHHHHH
Confidence 999 99999999999988754
No 143
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.74 E-value=1.8e-17 Score=155.08 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=96.7
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCC----------CHhhHHHHHHHHHHhhhc---CCCeEEEEeeCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLN----------DLSTLDALKHWVPSIDLQ---KFEILLCIGNKVD 163 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~----------~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~D 163 (289)
.+.+++|||+||++|+.++..|+++++++|||||++ +..+|+....|+..+... ...|+||+|||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 467999999999999999999999999999999998 788999999898888654 3349999999999
Q ss_pred CCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHH-Hc------------------
Q 040295 164 LLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCT-EH------------------ 224 (289)
Q Consensus 164 l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------ 224 (289)
+. .++ +.......+-|++ .| ... .+.+..|+. .+
T Consensus 240 L~--------~ek-i~~~~l~~~fp~y--------~g------~~~----~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~ 292 (340)
T 4fid_A 240 LF--------EEK-LTKVPLNTIFPEY--------TG------GDN----AVMGAQYIQQLFTGKLQTEEMNISGADGTA 292 (340)
T ss_dssp HH--------HHH-HHHSCGGGTCTTC--------CC------TTC----HHHHHHHHHHHHHTTSEEEESCC-------
T ss_pred hh--------hhh-cCcchHHHhhhhh--------cC------CCC----HHHHHHHHHHhcccccchhhhhcccccccc
Confidence 94 222 2221112222222 11 001 122333322 22
Q ss_pred --------CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccC
Q 040295 225 --------RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSG 271 (289)
Q Consensus 225 --------~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~ 271 (289)
.+.+++|||++. .||+.+|..+.+.++. .++..
T Consensus 293 ~~~~~~~~~iy~h~TsA~dt------------~nv~~vF~~v~~~Il~--~l~~~ 333 (340)
T 4fid_A 293 NIEGAVNEKVYTNPTNATDG------------SNIKRVFMLAVDVIMK--NMAAN 333 (340)
T ss_dssp -------CEEEEEEECTTCH------------HHHHHHHHHHHHHHHH--HHHHT
T ss_pred ccccccCcceEEEEEEeeCc------------HHHHHHHHHHHHHHHH--HHHHc
Confidence 366889999999 9999999999999887 45543
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=3e-18 Score=167.27 Aligned_cols=152 Identities=18% Similarity=0.130 Sum_probs=106.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCch-hhhcc--------cccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHE-EFSIR--------SLPI 118 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e-~~~~~--------~~~~ 118 (289)
.+||+|+|.+|||||||+|+|++.++. ....+....++....+..++ ..+.+|||||+. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999988642 22122222222223333343 468999999987 55422 2356
Q ss_pred ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 119 SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
++.+|++|+|||++++.+++...- +..+ ...|+|+|+||+|+..... ..
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l---~~~piivV~NK~DL~~~~~-----~~---------------------- 369 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKI-LERI---KNKRYLVVINKVDVVEKIN-----EE---------------------- 369 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHH-HHHH---TTSSEEEEEEECSSCCCCC-----HH----------------------
T ss_pred hhcccEEEEEecCCCCCCHHHHHH-HHHh---cCCCEEEEEECcccccccC-----HH----------------------
Confidence 788999999999999888876543 3333 3458999999999953210 01
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
.+..++. .+++++++||+++ .|++++|++|.+.+.
T Consensus 370 -----------------~~~~~~~-~~~~~i~iSAktg------------~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 370 -----------------EIKNKLG-TDRHMVKISALKG------------EGLEKLEESIYRETQ 404 (482)
T ss_dssp -----------------HHHHHHT-CSTTEEEEEGGGT------------CCHHHHHHHHHHHTH
T ss_pred -----------------HHHHHhc-CCCcEEEEECCCC------------CCHHHHHHHHHHHHh
Confidence 1233332 4478999999999 999999999998765
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=7.6e-18 Score=164.39 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=108.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCC--CcceEEeeEEeecCcceEEEEEEEcCCchhhhccccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN-------FEDASDS--SSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLP 117 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~-------~~~~~~~--t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~ 117 (289)
.+.++|+++|+.++|||||+++|.+.. +.....+ |....+....+ . ...+.+|||||++.|......
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~--~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--E--NYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--T--TEEEEECCCSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--C--CEEEEEEECCChHHHHHHHHH
Confidence 346899999999999999999999876 2222222 22222222222 2 257999999999999887778
Q ss_pred cccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 118 ISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
++..+|++|+|+|+++ +++++.+. .+...+ .|+|+|+||+|+.+. ...
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~~-ip~IvviNK~Dl~~~------~~~------------------ 143 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDHFN-IPIIVVITKSDNAGT------EEI------------------ 143 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHTT-CCBCEEEECTTSSCH------HHH------------------
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHHcC-CCEEEEEECCCcccc------hhH------------------
Confidence 8999999999999987 66666654 223333 356889999999641 111
Q ss_pred CCcccCCCCCCCCCCcHHHHHHHHHHHHHc----CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 195 ISETEGSSLLGDEEPSWEIRRSCLEWCTEH----RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
....+++.+++... +++++++||++| .|+++++++|...+
T Consensus 144 ----------------~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g------------~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 144 ----------------KRTEMIMKSILQSTHNLKNSSIIPISAKTG------------FGVDELKNLIITTL 187 (482)
T ss_dssp ----------------HHHHHHHHHHHHHSSSGGGCCEEECCTTTC------------TTHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhhhcccccceEEEEECcCC------------CCHHHHHHHHHHhh
Confidence 12223356666655 568999999999 99999999999866
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.74 E-value=3e-17 Score=154.89 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=105.0
Q ss_pred Cce-EEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCcceEEeeEEeecCcceEEEEEEEcCCc---------hhhhcccc
Q 040295 49 RPG-ILIIGSSNVGKRTILSRLLSVNFEDA--SDSSSELLVNGWTINTKYYTADVSLWMAHLH---------EEFSIRSL 116 (289)
Q Consensus 49 ~iK-I~ilG~~gvGKSSLi~rl~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~---------e~~~~~~~ 116 (289)
+++ |+|+|++|||||||+++|.+..+... ...|.... ...+...+ ..+.+|||+|. +.|....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~--~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl- 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPK--RYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL- 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSC--EEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCE--EEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-
Confidence 456 99999999999999999998876322 22232222 22333343 45899999996 3344433
Q ss_pred ccccCccEEEEEEeCCCHh--hHHHHHHHHHHhhhc--CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 117 PISDQLTALVMVFNLNDLS--TLDALKHWVPSIDLQ--KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~--S~~~l~~~~~~i~~~--~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
..+..+|++++|+|++++. .++.+..|...+... ...|+|+|+||+|+.+.. ..+.+
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-----~~~~~-------------- 313 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-----LYKKL-------------- 313 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-----HHHHH--------------
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-----HHHHH--------------
Confidence 3477899999999999877 666666666655544 234899999999996532 01111
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc---CCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEH---RIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
..+..++... +.+++++||+++ .|++++++.|.+.+..
T Consensus 314 ----------------------~~~~~l~~~l~~~~~~~~~~SA~~g------------~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 314 ----------------------DLVEKLSKELYSPIFDVIPISALKR------------TNLELLRDKIYQLATQ 354 (364)
T ss_dssp ----------------------HHHHHHHHHHCSCEEEEEECBTTTT------------BSHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHhcCCCCcEEEEECCCC------------cCHHHHHHHHHHHhcc
Confidence 1144455554 346899999999 9999999999886643
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=1e-17 Score=161.32 Aligned_cols=161 Identities=13% Similarity=0.045 Sum_probs=100.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc-----------
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS----------- 115 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~----------- 115 (289)
..+||+|+|++|||||||++++++..+.. ...++.+.+.....+..++. .+.+|||+|+.++....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 45899999999999999999999887521 11112222222223333443 57899999985443221
Q ss_pred -cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCC
Q 040295 116 -LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSG 194 (289)
Q Consensus 116 -~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 194 (289)
..+++.+|++++|+|.++..+++.. .+...+. ....|+++|+||+|+....... ..
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~~~~~~ilv~NK~Dl~~~~~~~---~~------------------ 313 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-RRGRASVVVFNKWDLVVHREKR---YD------------------ 313 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-HTTCEEEEEEECGGGSTTGGGC---HH------------------
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-HcCCCEEEEEECccCCCchhhH---HH------------------
Confidence 1346678999999999987666543 2223333 3455899999999996431100 01
Q ss_pred CCcccCCCCCCCCCCcHHHHHH-HHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 195 ISETEGSSLLGDEEPSWEIRRS-CLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
+..+. ...+....+++++++||++| .|++++|+.+.+.+
T Consensus 314 -----------------~~~~~~~~~~~~~~~~~~~~~SA~~g------------~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 314 -----------------EFTKLFREKLYFIDYSPLIFTSADKG------------WNIDRMIDAMNLAY 353 (439)
T ss_dssp -----------------HHHHHHHHHCGGGTTSCEEECBTTTT------------BSHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHhccCCCCcEEEEECCCC------------CCHHHHHHHHHHHH
Confidence 11111 23334444678999999999 99999999998755
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.73 E-value=1.9e-18 Score=167.85 Aligned_cols=154 Identities=15% Similarity=0.098 Sum_probs=99.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc--------ccc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS--------LPI 118 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~--------~~~ 118 (289)
.++||+|+|++|||||||+|+|++.++. ....++.+.++....+..++ ..+.+|||||+..+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4589999999999999999999987643 22222222222222233333 468999999986654332 246
Q ss_pred ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 119 SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
++.+|++|+|||++++.++.. ..|+..+.. .|+++|+||+|+.+.. .+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~---~piivV~NK~Dl~~~~--------~~-------------------- 348 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVKH---RPLILVMNKIDLVEKQ--------LI-------------------- 348 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHTT---SCEEEEEECTTSSCGG--------GS--------------------
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhccC---CcEEEEEECCCCCcch--------hh--------------------
Confidence 788999999999998777655 445555543 5899999999996421 11
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
. . ...+. .+.+++++||+++ .|++++++.|.+.+...
T Consensus 349 ------~--~--------~~~~~--~~~~~i~iSAktg------------~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 349 ------T--S--------LEYPE--NITQIVHTAAAQK------------QGIDSLETAILEIVQTG 385 (462)
T ss_dssp ------T--T--------CCCCT--TCCCEEEEBTTTT------------BSHHHHHHHHHHHHTTS
T ss_pred ------H--H--------HHHhc--cCCcEEEEECCCC------------CCHHHHHHHHHHHHhcc
Confidence 0 0 11111 3568999999999 99999999999877543
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=5.6e-19 Score=166.45 Aligned_cols=161 Identities=12% Similarity=0.163 Sum_probs=90.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC-CCCCC--------CCCcceEEeeEEeecCcceEEEEEEEcCCc-------hh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN-FEDAS--------DSSSELLVNGWTINTKYYTADVSLWMAHLH-------EE 110 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~-~~~~~--------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~-------e~ 110 (289)
...++|+|+|++|||||||++++++.. +...+ .+|.+..+....+...+..+.+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 345899999999999999999987654 32222 145554444444445556678999999999 77
Q ss_pred hhcccc-------ccccCccEE-----------EEEEeCCC-HhhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCCCCCc
Q 040295 111 FSIRSL-------PISDQLTAL-----------VMVFNLND-LSTLDALK-HWVPSIDLQKFEILLCIGNKVDLLPGHPV 170 (289)
Q Consensus 111 ~~~~~~-------~~~~~ad~v-----------IlV~Dv~~-~~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~~~~~ 170 (289)
|..+.. .|++.++++ ++||++++ ..++..+. .|+..+. ...|+|+|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~--~~~piIlV~NK~Dl~~---- 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH--NKVNIVPVIAKADTLT---- 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC--S-SCEEEEEECCSSSC----
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc--cCCCEEEEEECCCCCC----
Confidence 776665 555554433 47777765 56666665 4655553 3348999999999964
Q ss_pred hhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchh
Q 040295 171 HAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQG 250 (289)
Q Consensus 171 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~ 250 (289)
.+.+ ......+..++..++++|+++||+++ .+
T Consensus 189 ----~~ev--------------------------------~~~k~~i~~~~~~~~i~~~~~Sa~~~------------~~ 220 (361)
T 2qag_A 189 ----LKER--------------------------------ERLKKRILDEIEEHNIKIYHLPDAES------------DE 220 (361)
T ss_dssp ----HHHH--------------------------------HHHHHHHHHHTTCC-CCSCCCC------------------
T ss_pred ----HHHH--------------------------------HHHHHHHHHHHHHCCCCEEeCCCcCC------------Cc
Confidence 1222 12223477888888999999999998 55
Q ss_pred HHHHHHHHHHhc
Q 040295 251 VERLYGALSAHM 262 (289)
Q Consensus 251 i~~l~~~L~~~~ 262 (289)
++.|..+.+.+
T Consensus 221 -~e~~~~l~~~i 231 (361)
T 2qag_A 221 -DEDFKEQTRLL 231 (361)
T ss_dssp ----CHHHHHHH
T ss_pred -chhHHHHHHHH
Confidence 55555555444
No 150
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.73 E-value=7.3e-18 Score=144.51 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=102.0
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCch----------hhhc
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE----------EFSI 113 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e----------~~~~ 113 (289)
+....+.+|+|+|++|||||||++++.+..+...+.++.+..+....+...+ .+.+|||||.. .|..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 7778889999999999999999999998875444445555433211111111 37899999974 2333
Q ss_pred cccccc---cCccEEEEEEeCCCHhhHH--HHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCC
Q 040295 114 RSLPIS---DQLTALVMVFNLNDLSTLD--ALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADP 188 (289)
Q Consensus 114 ~~~~~~---~~ad~vIlV~Dv~~~~S~~--~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~ 188 (289)
....++ +.++++++|+|++++.++. .+..|+.. ...|+++|+||+|+..+. +..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~v~nK~D~~s~~----~~~~~~---------- 159 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----SNIAVLVLLTKADKLASG----ARKAQL---------- 159 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----TTCCEEEEEECGGGSCHH----HHHHHH----------
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEecccCCCch----hHHHHH----------
Confidence 222333 5789999999999866554 23344432 234788899999987521 111111
Q ss_pred cccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 189 DFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
..+..++...+ +.++++||+++ .|++++++.|.+.+-
T Consensus 160 --------------------------~~~~~~~~~~~~~~~~~~~Sal~~------------~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 160 --------------------------NMVREAVLAFNGDVQVETFSSLKK------------QGVDKLRQKLDTWFS 198 (210)
T ss_dssp --------------------------HHHHHHHGGGCSCEEEEECBTTTT------------BSHHHHHHHHHHHHC
T ss_pred --------------------------HHHHHHHHhcCCCCceEEEeecCC------------CCHHHHHHHHHHHHh
Confidence 12566666654 46889999999 999999999988653
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.73 E-value=2.6e-17 Score=164.37 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=110.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCC--CC-----CCC------CCCcceEE----eeEEeec-CcceEEEEEEEcCCch
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVN--FE-----DAS------DSSSELLV----NGWTINT-KYYTADVSLWMAHLHE 109 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~--~~-----~~~------~~t~~~~~----~~~~i~~-~~~~~~l~I~Dt~G~e 109 (289)
...+|+|+|+.++|||||+++|+... +. ..+ ..+.+.++ ....... ++..+.+.+|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999998632 11 000 01112221 1222221 4456889999999999
Q ss_pred hhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 110 ~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
.|......+++.+|++|+|+|+++..+++....|..... ...|+|+|+||+|+.... ...+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~------~~~v----------- 143 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAAD------PERV----------- 143 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCC------HHHH-----------
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCccccc------HHHH-----------
Confidence 998888888999999999999999888888888876554 234899999999995421 1111
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..++....++ +++++||++| .|+++++++|.+.+.+.
T Consensus 144 ---------------------------~~ei~~~lg~~~~~vi~vSAktg------------~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 144 ---------------------------AEEIEDIVGIDATDAVRCSAKTG------------VGVQDVLERLVRDIPPP 183 (599)
T ss_dssp ---------------------------HHHHHHHTCCCCTTCEEECTTTC------------TTHHHHHHHHHHHSCCC
T ss_pred ---------------------------HHHHHHHhCCCcceEEEeecccC------------CCchhHHHHHhhcCCCc
Confidence 4556666666 4999999999 99999999999877654
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.73 E-value=5.6e-17 Score=156.47 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=104.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCCcceEEeeEEeecCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFE-------------------------------DASDSSSELLVNGWTINTKY 95 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~~ 95 (289)
...++|+++|++++|||||+++|+..... .+..+.++.+.....+...
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 34589999999999999999999654211 0111223333333333333
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhh---HH---HHHHHHHHhhhcCCCeEEEEeeCCCCCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLST---LD---ALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S---~~---~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~ 169 (289)
...+.||||||++.|......+++.+|++|+|+|+++... |+ .....+..+...+.+++|+|+||+|+....
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~- 171 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN- 171 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc-
Confidence 3479999999999998888888999999999999987532 21 112222233444555689999999995311
Q ss_pred chhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC------CeEEEeecCCCccccccc
Q 040295 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR------IEYIEACASNVDFDKCLS 243 (289)
Q Consensus 170 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ie~Sa~~~~~~~~~~ 243 (289)
..+. ...++..+...++...+ ++++++||++|
T Consensus 172 ----~~~~-------------------------------~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G------- 209 (439)
T 3j2k_7 172 ----WSNE-------------------------------RYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTG------- 209 (439)
T ss_pred ----hHHH-------------------------------HHHHHHHHHHHHHHHhcccccCCeeEEEeeccCC-------
Confidence 0000 11223344566666555 46999999999
Q ss_pred CCCCchhHHHHHH
Q 040295 244 IDGDSQGVERLYG 256 (289)
Q Consensus 244 ~~~~~~~i~~l~~ 256 (289)
.|+.++++
T Consensus 210 -----~ni~~l~~ 217 (439)
T 3j2k_7 210 -----ANLKEQSD 217 (439)
T ss_pred -----cccccccc
Confidence 99988544
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.72 E-value=4.5e-17 Score=162.64 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=112.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCC----------CCcceEEeeEEeec-CcceEEEEEEEcCCch
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVN--FED-----ASD----------SSSELLVNGWTINT-KYYTADVSLWMAHLHE 109 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~--~~~-----~~~----------~t~~~~~~~~~i~~-~~~~~~l~I~Dt~G~e 109 (289)
...+|+|+|+.++|||||+++|+... +.. ... .|+........... ++..+.+.+|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999998631 110 000 01111111122221 3446789999999999
Q ss_pred hhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 110 EFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 110 ~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
.|......+++.+|++|+|+|+++..+++....|..... ...|+|+|+||+|+.... ...+
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~------~~~v----------- 145 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD------VDRV----------- 145 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC------HHHH-----------
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC------HHHH-----------
Confidence 998878788999999999999999888888888876553 234799999999995421 1111
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
..++....++ +++++||++| .|++++|++|++.+.+.
T Consensus 146 ---------------------------~~el~~~lg~~~~~vi~vSAktg------------~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 146 ---------------------------KKQIEEVLGLDPEEAILASAKEG------------IGIEEILEAIVNRIPPP 185 (600)
T ss_dssp ---------------------------HHHHHHTSCCCGGGCEECBTTTT------------BSHHHHHHHHHHHSCCC
T ss_pred ---------------------------HHHHHHhhCCCcccEEEEEeecC------------CCchHHHHHHHHhcccc
Confidence 3455555665 4899999999 99999999999977654
No 154
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.72 E-value=5.7e-17 Score=161.90 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=84.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCcceEEeeEEe------------ecCcceEEEEEEEcCCchhh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA----SDSSSELLVNGWTI------------NTKYYTADVSLWMAHLHEEF 111 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~----~~~t~~~~~~~~~i------------~~~~~~~~l~I~Dt~G~e~~ 111 (289)
+.++|+|+|++++|||||+++|.+..+... .+++.+..+..+.. ........+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 347999999999999999999997654332 23445544432210 00011235999999999999
Q ss_pred hccccccccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 112 SIRSLPISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 112 ~~~~~~~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..+...+++.+|++|+|||+++ +++++.+..+ +. ...|+++|+||+|+.+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~-~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM-YRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH-TTCCEEEEEECGGGST
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH-cCCeEEEEeccccccc
Confidence 9999888999999999999998 8888776532 22 3348999999999965
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.71 E-value=9.8e-18 Score=159.79 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=110.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC--------CCCCC--C-------CCCcceEEeeEEeecCcceEEEEEEEcCCchh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV--------NFEDA--S-------DSSSELLVNGWTINTKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~--------~~~~~--~-------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~ 110 (289)
..++|+++|++++|||||+++|++. .+... . ............+.. ....+.+|||||++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc--CCeEEEEEECCChHH
Confidence 3489999999999999999999873 22110 0 011111111222222 235789999999999
Q ss_pred hhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcc
Q 040295 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDF 190 (289)
Q Consensus 111 ~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~ 190 (289)
|......+++.+|++|+|+|+++.... ....|+..+...+.+.+++|+||+|+... +. .+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~~ip~iivviNK~Dl~~~-----~~--~~------------ 147 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQVGVPYIVVFMNKVDMVDD-----PE--LL------------ 147 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHTTCCCEEEEEECGGGCCC-----HH--HH------------
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHcCCCEEEEEEECccccCc-----HH--HH------------
Confidence 988777889999999999999876543 33455555655555448889999999631 11 00
Q ss_pred cCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCCcccccccCCCCchh---------------
Q 040295 191 CQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNVDFDKCLSIDGDSQG--------------- 250 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~~~~~~~~~~~~~~~--------------- 250 (289)
+.+..++..++..++ ++++++||++| .|
T Consensus 148 --------------------~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g------------~~v~~~~~~~~~~~~~~ 195 (405)
T 2c78_A 148 --------------------DLVEMEVRDLLNQYEFPGDEVPVIRGSALLA------------LEQMHRNPKTRRGENEW 195 (405)
T ss_dssp --------------------HHHHHHHHHHHHHTTSCTTTSCEEECCHHHH------------HHHHHHCTTCCTTSCHH
T ss_pred --------------------HHHHHHHHHHHHHhcccccCCCEEEccHHHh------------hhhhccccccccCCCcc
Confidence 112233567777665 57999999999 66
Q ss_pred ---HHHHHHHHHHhcc
Q 040295 251 ---VERLYGALSAHMW 263 (289)
Q Consensus 251 ---i~~l~~~L~~~~~ 263 (289)
+.++++.|...+.
T Consensus 196 ~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 196 VDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHhhcC
Confidence 7888888887654
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.71 E-value=2.1e-17 Score=157.25 Aligned_cols=171 Identities=15% Similarity=0.102 Sum_probs=108.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC-------CCCCC--C-----CCCcceEE--eeEEeecCcceEEEEEEEcCCchhhh
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV-------NFEDA--S-----DSSSELLV--NGWTINTKYYTADVSLWMAHLHEEFS 112 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~-------~~~~~--~-----~~t~~~~~--~~~~i~~~~~~~~l~I~Dt~G~e~~~ 112 (289)
.++|+++|+.++|||||+++|++. .+... . ....+.+. ....+.. ....+.+|||||++.|.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST--AARHYAHTDCPGHADYV 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC--SSCEEEEEECSSHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc--CCeEEEEEECCChHHHH
Confidence 479999999999999999999874 11110 0 00111111 1112222 23578999999999998
Q ss_pred ccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccC
Q 040295 113 IRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQ 192 (289)
Q Consensus 113 ~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 192 (289)
.....+++.+|++|+|+|+++....+....| ..+...+.+.+++|+||+|+... ...+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~~vp~iivviNK~Dl~~~-------~~~~-------------- 138 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQIGVEHVVVYVNKADAVQD-------SEMV-------------- 138 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHTTCCCEEEEEECGGGCSC-------HHHH--------------
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHcCCCeEEEEEECcccCCC-------HHHH--------------
Confidence 7777889999999999999985443333333 33444444447889999999631 1111
Q ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCCcccccccCCCCchh-HHHHHHHHHHhccc
Q 040295 193 SGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNVDFDKCLSIDGDSQG-VERLYGALSAHMWP 264 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~~~~~~~~~~~~~~~-i~~l~~~L~~~~~~ 264 (289)
+.+..++.+++..++ ++++++||+++.-.+.+.- ..| +.++++.|...+.+
T Consensus 139 ------------------~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~---~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 139 ------------------ELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPEL---GLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp ------------------HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTT---THHHHHHHHHHHHHHSCC
T ss_pred ------------------HHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCc---cCCcHHHHHHHHHHhCCC
Confidence 122234667777766 5899999999700000000 024 99999999886643
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.71 E-value=1.2e-18 Score=171.88 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=84.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
..++|+|+|++++|||||+++|.+..+.....++++..+....+... ....+.+|||||++.|..+...+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45799999999999999999999877654444444433322222221 11258999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 128 VFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 128 V~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|+|+++....+....| ..+... ..|+|+|+||+|+..
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~~-~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKDA-HVPIVLAINKCDKAE 118 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHTT-TCCEEECCBSGGGTT
T ss_pred EEECCCCccHHHHHHH-HHHHHc-CCcEEEEEecccccc
Confidence 9999986555544433 233333 337999999999953
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.71 E-value=2.7e-17 Score=160.30 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=77.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCC--C-----------------------------CCCCCcceEEeeEEeecCcc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFE--D-----------------------------ASDSSSELLVNGWTINTKYY 96 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~--~-----------------------------~~~~t~~~~~~~~~i~~~~~ 96 (289)
..+||+++|++|+|||||+++|++.... . ...+.+........+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence 4589999999999999999999865210 0 001111111122222222
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHH------HHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDA------LKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~------l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
...+.||||||++.|......+++.+|++|+|+|+++..++.. ....+......+.+|+|+|+||+|+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 4579999999999999888889999999999999998765432 222223334445567999999999964
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=2.1e-17 Score=158.93 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=97.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCC---CCC---------CCCCcce---------------------EEeeEEeecCc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNF---EDA---------SDSSSEL---------------------LVNGWTINTKY 95 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~---~~~---------~~~t~~~---------------------~~~~~~i~~~~ 95 (289)
.++|+++|+.++|||||+++|++... ... ...+.+. ......+..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-- 101 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-- 101 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC--
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec--
Confidence 48999999999999999999986541 110 0011100 000011111
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHH
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYR 175 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~ 175 (289)
....+.+|||||++.|......+++.+|++|+|+|+++.... ....|+..+...+.+++|+|+||+|+.... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~------~ 174 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLGIKHIVVAINKMDLNGFD------E 174 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTTCCEEEEEEECTTTTTSC------H
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcCCCeEEEEEEcCcCCccc------H
Confidence 235789999999999988777889999999999999975432 233444445555556899999999996421 0
Q ss_pred HHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCC
Q 040295 176 RRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNV 236 (289)
Q Consensus 176 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~ 236 (289)
.. ...+...+..++...+ ++++++||++|
T Consensus 175 ~~--------------------------------~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g 208 (434)
T 1zun_B 175 RV--------------------------------FESIKADYLKFAEGIAFKPTTMAFVPMSALKG 208 (434)
T ss_dssp HH--------------------------------HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTC
T ss_pred HH--------------------------------HHHHHHHHHHHHHHhCCCccCceEEEEeccCC
Confidence 10 1123344677777777 67999999999
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=6.6e-18 Score=163.41 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=99.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCC--------chhhhcccccccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHL--------HEEFSIRSLPISD 120 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G--------~e~~~~~~~~~~~ 120 (289)
..+|+|+|.+|||||||+|+|++..+. ....+.+.+..............+.+||||| ++.+......+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 479999999999999999999987753 2223344433222222222334689999999 7788877788899
Q ss_pred CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 121 QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 121 ~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
.+|++|+|+|.++..+ ....|+..+-.....|+++|+||+|+... +..
T Consensus 102 ~ad~il~VvD~~~~~~--~~d~~l~~~l~~~~~pvilV~NK~D~~~~--------~~~---------------------- 149 (456)
T 4dcu_A 102 EADVIIFMVNGREGVT--AADEEVAKILYRTKKPVVLAVNKLDNTEM--------RAN---------------------- 149 (456)
T ss_dssp HCSEEEEEEESSSCSC--HHHHHHHHHHTTCCSCEEEEEECC--------------------------------------
T ss_pred hCCEEEEEEeCCCCCC--hHHHHHHHHHHHcCCCEEEEEECccchhh--------hhh----------------------
Confidence 9999999999876433 33344444433355689999999998531 100
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCC-eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCTEHRI-EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
+.++. ..++ +++++||++| .|+.++++.+...+.
T Consensus 150 ----------------~~e~~-~lg~~~~~~iSA~~g------------~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 150 ----------------IYDFY-SLGFGEPYPISGTHG------------LGLGDLLDAVAEHFK 184 (456)
T ss_dssp -----------------CCSG-GGSSSSEEECCTTTC------------TTHHHHHHHHHTTGG
T ss_pred ----------------HHHHH-HcCCCceEEeecccc------------cchHHHHHHHHhhcc
Confidence 11111 1243 4689999999 999999999988664
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=9.1e-17 Score=143.31 Aligned_cols=173 Identities=13% Similarity=0.062 Sum_probs=100.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEE--eeEEeecCcceEEEEEEEcCCc--------hhhhcccc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLV--NGWTINTKYYTADVSLWMAHLH--------EEFSIRSL 116 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~--~~~~i~~~~~~~~l~I~Dt~G~--------e~~~~~~~ 116 (289)
...+||+++|.+|||||||+|++++..+......+.+.+. ........ ...+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 3458999999999999999999999886543222211111 11122223 356899999996 33322222
Q ss_pred cc----ccCccEEEEEEeCCCHhhH-HHHHHHHHHhhhc--CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCc
Q 040295 117 PI----SDQLTALVMVFNLNDLSTL-DALKHWVPSIDLQ--KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPD 189 (289)
Q Consensus 117 ~~----~~~ad~vIlV~Dv~~~~S~-~~l~~~~~~i~~~--~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~ 189 (289)
.+ .+.+|++|+|+|+++.... ..+..|+..+... ...|+|||+||+|+.... ....+.. .
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-----~~~~l~~---~----- 163 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-----LHDYVSN---T----- 163 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----HHHHHHH---C-----
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-----HHHHHhh---c-----
Confidence 22 3899999999999853211 2223444443211 134899999999995421 1111100 0
Q ss_pred ccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 190 FCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
.. ...+.+....+..|+.++++..+-. ...++.+++..+.+.+..
T Consensus 164 ---------------~~--------~~l~~l~~~~g~~~~~~~~~~~~~~-------~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 164 ---------------EN--------RALRELVAECGGRVCAFDNRATGRE-------QEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp ---------------CC--------HHHHHHHHHTTTCEEECCTTCCHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred ---------------cc--------HHHHHHHHHcCCeEEEEeCCCCccc-------cHHHHHHHHHHHHHHHHH
Confidence 00 1256777778877777665542000 017999999999886653
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.70 E-value=2e-17 Score=159.31 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=99.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC--CCCCC-------------------------------CCCCcceEEeeEEeecC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV--NFEDA-------------------------------SDSSSELLVNGWTINTK 94 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~--~~~~~-------------------------------~~~t~~~~~~~~~i~~~ 94 (289)
+.++|+++|+.++|||||+++|+.. .+... ...|....+. .+...
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~~~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--RFETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--EEECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--EEecC
Confidence 3489999999999999999999864 33211 1112222221 22222
Q ss_pred cceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHH-------hhhcCCCeEEEEeeCCCCCCC
Q 040295 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPS-------IDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 95 ~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~-------i~~~~~~~iivvgnK~Dl~~~ 167 (289)
...+.+|||||++.|......+++.+|++|+|+|+++ .+|+.+..|... ....+.+++|+|+||+|+...
T Consensus 83 --~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 --KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp --SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred --CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 3579999999999998888888999999999999998 788865444332 233344578899999999642
Q ss_pred CCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCC
Q 040295 168 HPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNV 236 (289)
Q Consensus 168 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~ 236 (289)
.. . + .+ ...+..++.+++..++ ++++++||++|
T Consensus 160 ~~-~-~-~~---------------------------------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g 197 (435)
T 1jny_A 160 PY-D-E-KR---------------------------------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG 197 (435)
T ss_dssp TT-C-H-HH---------------------------------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred cc-c-H-HH---------------------------------HHHHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence 10 0 0 00 1223345677777776 67999999999
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.4e-16 Score=159.56 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=79.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCcceEEeeEEeecCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDAS-------------------------------DSSSELLVNGWTINTKY 95 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~-------------------------------~~t~~~~~~~~~i~~~~ 95 (289)
...+||+|+|++|+|||||+++|++....... .+.+........+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 44689999999999999999999976432110 0111111111222222
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHh---hH---HHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLS---TL---DALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~---S~---~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
...+.||||||++.|......+++.+|++|+|+|+++.. +| ......+......+.+++|||+||+|+..
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 357999999999999888888899999999999998742 11 11112222233445567999999999964
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=9.1e-17 Score=158.42 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=81.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC------------------CCCC------CCCCcceEEeeEEeecCcceEEEEE
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN------------------FEDA------SDSSSELLVNGWTINTKYYTADVSL 102 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~------------------~~~~------~~~t~~~~~~~~~i~~~~~~~~l~I 102 (289)
....+|+|+|++|||||||+++|+... +.+. ...|.... ...+.. ..+.+.|
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~--~~~~~~--~~~~i~l 86 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTS--VMQFPY--KDYLINL 86 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSS--EEEEEE--TTEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEe--EEEEEe--CCEEEEE
Confidence 345789999999999999999997211 1000 01111111 112222 2467999
Q ss_pred EEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 103 ~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|||||++.|......+++.+|++|+|+|.++..+.+....|.. +... ..|+++|+||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~~-~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 87 LDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRLR-HTPIMTFINKMDRDT 148 (528)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHTT-TCCEEEEEECTTSCC
T ss_pred EECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHHc-CCCEEEEEeCCCCcc
Confidence 9999999998888889999999999999998877777776643 3332 348999999999964
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.67 E-value=1e-17 Score=164.09 Aligned_cols=112 Identities=17% Similarity=0.258 Sum_probs=80.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVM 127 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIl 127 (289)
+.++|+|+|+.++|||||+++|.+..+.....+++........+..++ ..+.+|||||++.|..++..+++.+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999987655433222222222112222233 358999999999999999888999999999
Q ss_pred EEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 128 VFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 128 V~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|+|+++ +++++.+.. +... ..|+|+++||+|+..
T Consensus 81 VVda~~g~~~qT~e~l~~----~~~~-~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQH----AKAA-QVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEETTTBSCTTTHHHHHH----HHHT-TCCEEEEEECSSSST
T ss_pred EeecccCccHHHHHHHHH----HHhc-CceEEEEEEeccccc
Confidence 999987 555554432 2222 337999999999953
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=2.2e-16 Score=149.24 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=105.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEe
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFN 130 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~D 130 (289)
+|+++|++++|||||+++|+ ....|+...+.. +... ...+.+|||||++.|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~--~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYN--NDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEE--ECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEE--EecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 222333333332 2223 3469999999999997766677899999999999
Q ss_pred CCCHhhHHHHHHHHHHhhhcCCCeEEEEee-CCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCC
Q 040295 131 LNDLSTLDALKHWVPSIDLQKFEILLCIGN-KVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEP 209 (289)
Q Consensus 131 v~~~~S~~~l~~~~~~i~~~~~~~iivvgn-K~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (289)
+ ...+.....|+..+...+.+.+|+|+| |+|+ .. +...
T Consensus 93 -~-~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-----~~~~--------------------------------- 131 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-----HAID--------------------------------- 131 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-----HHHH---------------------------------
T ss_pred -C-CCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-----HHHH---------------------------------
Confidence 5 334555566666666666655477788 9999 41 1111
Q ss_pred cHHHHHHHHHHHHHcC---CeEEE--eecCC---CcccccccCCCCchhHHHHHHHHHHhcc
Q 040295 210 SWEIRRSCLEWCTEHR---IEYIE--ACASN---VDFDKCLSIDGDSQGVERLYGALSAHMW 263 (289)
Q Consensus 210 ~~~~~~~~~~~~~~~~---~~~ie--~Sa~~---~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 263 (289)
....++.+++..++ +++++ +||++ + .|++++++.|.+.+-
T Consensus 132 --~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g------------~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 132 --ELKAKLKVITSGTVLQDWECISLNTNKSAKNPF------------EGVDELKARINEVAE 179 (370)
T ss_dssp --HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTT------------TTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCceEEEecccccccCcCC------------CCHHHHHHHHHhhcc
Confidence 11122455555543 68999 99999 9 999999999987653
No 167
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.66 E-value=2.8e-16 Score=147.70 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=102.3
Q ss_pred CCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCC----------HhhHHHHHHHHHHhh
Q 040295 79 DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLND----------LSTLDALKHWVPSID 148 (289)
Q Consensus 79 ~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~----------~~S~~~l~~~~~~i~ 148 (289)
.+|.|.......+ + .+.+.+|||+||+.|+..+..|+++++++|||||+++ ..+|+....|+..+.
T Consensus 178 ~~T~Gi~~~~~~~--~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 178 VKTTGIVETHFTF--K--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp CCCCSEEEEEEEE--T--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred CceeceEEEEEee--C--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 4566655433333 2 4789999999999999999999999999999999998 567999999998886
Q ss_pred hc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHH---
Q 040295 149 LQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCT--- 222 (289)
Q Consensus 149 ~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (289)
.. ...|+||||||+|+.. .++.......+-|++ .|. .+ ...+..++.
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~---------~ki~~~~l~~~fp~~--------~g~--~~--------~~e~~~~~~~~f 306 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFE---------EKIKKSPLTICYPEY--------AGS--NT--------YEEAAAYIQCQF 306 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHH---------HHHTTSCGGGTCTTC--------CSC--SC--------HHHHHHHHHHHH
T ss_pred cCccccCCcEEEEEECcCchh---------hhccccchhhccccc--------CCC--CC--------HHHHHHHHHHHH
Confidence 54 3459999999999941 122111111122222 010 01 123666665
Q ss_pred --------HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 223 --------EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 223 --------~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
..++.|++|||+++ .||.++|.++.+.++.
T Consensus 307 ~~l~~~~~~~~~~~~etSA~~~------------~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 307 EDLNKRKDTKEIYTHFTCATDT------------KNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HTTCSCTTTCCEEEEECCTTCH------------HHHHHHHHHHHHHHHH
T ss_pred HHhhcccCCCceEEEEEECcCc------------hhHHHHHHHHHHHHHH
Confidence 35678999999999 9999999999988764
No 168
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.66 E-value=9.8e-17 Score=147.36 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=110.4
Q ss_pred HHHHHHhcCCCC-CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHh-hHHHHH
Q 040295 64 TILSRLLSVNFE-DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLS-TLDALK 141 (289)
Q Consensus 64 SLi~rl~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~-S~~~l~ 141 (289)
+|+.++..+.|. ..+.+|++..+. ..+..++ ++.+||| +++|+.+++.|++++|++|+|||++++. +|+.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688899999998 788999996554 4443333 5899999 9999999999999999999999999997 799999
Q ss_pred HHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHH
Q 040295 142 HWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWC 221 (289)
Q Consensus 142 ~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (289)
.|+..++. ...|+++|+||+||.+. +.+ .++.+|+
T Consensus 106 ~~l~~~~~-~~~piilv~NK~DL~~~--------~~v------------------------------------~~~~~~~ 140 (301)
T 1u0l_A 106 KFLVLAEK-NELETVMVINKMDLYDE--------DDL------------------------------------RKVRELE 140 (301)
T ss_dssp HHHHHHHH-TTCEEEEEECCGGGCCH--------HHH------------------------------------HHHHHHH
T ss_pred HHHHHHHH-CCCCEEEEEeHHHcCCc--------hhH------------------------------------HHHHHHH
Confidence 99998866 34588999999999531 111 1256777
Q ss_pred HHcC--CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 222 TEHR--IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 222 ~~~~--~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
..++ ++|++|||+++ .|++++|..+...+
T Consensus 141 ~~~~~~~~~~~~SAktg------------~gv~~lf~~l~gei 171 (301)
T 1u0l_A 141 EIYSGLYPIVKTSAKTG------------MGIEELKEYLKGKI 171 (301)
T ss_dssp HHHTTTSCEEECCTTTC------------TTHHHHHHHHSSSE
T ss_pred HHHhhhCcEEEEECCCC------------cCHHHHHHHhcCCe
Confidence 7777 89999999999 99999999886543
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.65 E-value=8.9e-17 Score=145.49 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCCc-----------------c---eEEe--------------
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDAS------DSSS-----------------E---LLVN-------------- 87 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~------~~t~-----------------~---~~~~-------------- 87 (289)
..++|+|+|.+|||||||+++|++..+.+.. .++. + .++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999874221 1110 0 0000
Q ss_pred -----------eEEeecCcceEEEEEEEcCCch-------------hhhccccccccCccEEE-EEEeCCCHhhHHHHHH
Q 040295 88 -----------GWTINTKYYTADVSLWMAHLHE-------------EFSIRSLPISDQLTALV-MVFNLNDLSTLDALKH 142 (289)
Q Consensus 88 -----------~~~i~~~~~~~~l~I~Dt~G~e-------------~~~~~~~~~~~~ad~vI-lV~Dv~~~~S~~~l~~ 142 (289)
...+... ....+.+|||||.. .+..+...|++.++++| +|+|.++..+......
T Consensus 105 g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred ccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000000 02569999999963 45556667888888776 7999987655544445
Q ss_pred HHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 143 WVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 143 ~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|+..+... ..|+++|+||+|+..
T Consensus 184 ~~~~~~~~-~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 184 IAKEVDPQ-GQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHCTT-CSSEEEEEECGGGSC
T ss_pred HHHHhCCC-CCeEEEEEEccccCC
Confidence 55555432 348999999999975
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.65 E-value=1e-16 Score=155.37 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=97.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCCcceEEeeEEeecCc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV--NFED-------------------------------ASDSSSELLVNGWTINTKY 95 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~--~~~~-------------------------------~~~~t~~~~~~~~~i~~~~ 95 (289)
.++|+++|++++|||||+++|++. .+.. ....|....+. .+...
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~~- 83 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFETP- 83 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEECS-
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEecC-
Confidence 479999999999999999999864 2211 01122222222 22222
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHh---hHH---HHHHHHHHhhhcCCCeEEEEeeCCCCCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLS---TLD---ALKHWVPSIDLQKFEILLCIGNKVDLLPGHP 169 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~---S~~---~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~ 169 (289)
...+.||||||++.|......+++.+|++|+|+|+++.. +|+ ....++......+.+++|+|+||+|+....
T Consensus 84 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~- 161 (458)
T 1f60_A 84 -KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD- 161 (458)
T ss_dssp -SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTC-
T ss_pred -CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCC-
Confidence 357999999999999888888899999999999999752 332 222233334444555699999999996210
Q ss_pred chhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCC
Q 040295 170 VHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNV 236 (289)
Q Consensus 170 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~ 236 (289)
+ .+ ..++..++..++...+ ++++++||++|
T Consensus 162 ---~-~~---------------------------------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g 196 (458)
T 1f60_A 162 ---E-SR---------------------------------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNG 196 (458)
T ss_dssp ---H-HH---------------------------------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTC
T ss_pred ---H-HH---------------------------------HHHHHHHHHHHHHHcCCCccCceEEEeecccC
Confidence 0 10 1123344667777666 57999999999
No 171
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=146.70 Aligned_cols=160 Identities=11% Similarity=0.117 Sum_probs=88.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC-C-------CCCcceEEeeEEeecCcceEEEEEEEcCCchhhh-------c
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA-S-------DSSSELLVNGWTINTKYYTADVSLWMAHLHEEFS-------I 113 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~-------~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~-------~ 113 (289)
.++|+|+|++|||||||+++|++..+... + .++.........+...+....+.+|||+|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 36789999999999999999998876321 1 1222222222222333444578999999986531 1
Q ss_pred ------------------cccccccCccEEEEEEeCCCH-hhHHHHH-HHHHHhhhcCCCeEEEEeeCCCCCCCCCchhH
Q 040295 114 ------------------RSLPISDQLTALVMVFNLNDL-STLDALK-HWVPSIDLQKFEILLCIGNKVDLLPGHPVHAE 173 (289)
Q Consensus 114 ------------------~~~~~~~~ad~vIlV~Dv~~~-~S~~~l~-~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~ 173 (289)
+...+++++++.+++|.+... .+|..+. .|+..+.. ..++|+|+||+|+...
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~--~v~iIlVinK~Dll~~------ 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTP------ 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT--TSEEEEEEESTTSSCH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc--cCcEEEEEEcccCccH------
Confidence 123456677777777777654 5676665 67777753 4589999999999641
Q ss_pred HHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHH
Q 040295 174 YRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVER 253 (289)
Q Consensus 174 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~ 253 (289)
+++ ...+..+..++..++++++++||+++ .++++
T Consensus 183 --~ev--------------------------------~~~k~~i~~~~~~~~i~~~~~sa~~~------------~~v~~ 216 (418)
T 2qag_C 183 --EEC--------------------------------QQFKKQIMKEIQEHKIKIYEFPETDD------------EEENK 216 (418)
T ss_dssp --HHH--------------------------------HHHHHHHHHHHHHHTCCCCCCC---------------------
T ss_pred --HHH--------------------------------HHHHHHHHHHHHHcCCeEEeCCCCCC------------cCHHH
Confidence 222 12334578888899999999999998 88998
Q ss_pred HHHHHHHhc
Q 040295 254 LYGALSAHM 262 (289)
Q Consensus 254 l~~~L~~~~ 262 (289)
+|..|...+
T Consensus 217 ~~~~l~~~i 225 (418)
T 2qag_C 217 LVKKIKDRL 225 (418)
T ss_dssp --------C
T ss_pred HHHHHHhhC
Confidence 888887654
No 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.63 E-value=3.4e-16 Score=152.05 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCCcceEEeeEEeecC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV--NFED-------------------------------ASDSSSELLVNGWTINTK 94 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~--~~~~-------------------------------~~~~t~~~~~~~~~i~~~ 94 (289)
+.++|+++|+.++|||||+++|+.. .+.. ....|+...+. .+..+
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~--~~~~~ 119 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA--YFETE 119 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC--EEECS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeE--EEecC
Confidence 3479999999999999999999752 2110 01112222211 12222
Q ss_pred cceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH---hhHHHHHHHHHH---hhhcCCCeEEEEeeCCCCC
Q 040295 95 YYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL---STLDALKHWVPS---IDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 95 ~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~---~S~~~l~~~~~~---i~~~~~~~iivvgnK~Dl~ 165 (289)
...+.||||||++.|......+++.+|++|+|+|+++. .+|+....|... ....+.+++|+|+||+|+.
T Consensus 120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp --SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 35789999999999988888889999999999999986 344432223222 2333444489999999995
No 173
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=7.9e-17 Score=148.11 Aligned_cols=173 Identities=11% Similarity=0.124 Sum_probs=83.7
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCCcceEEeeEEeecCcceEEEEE
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV-NFEDAS--------DSSSELLVNGWTINTKYYTADVSL 102 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~-~~~~~~--------~~t~~~~~~~~~i~~~~~~~~l~I 102 (289)
.||...++++. .++|+|+|++|||||||++++.+. .+.... .++.........+...+....+.+
T Consensus 7 ~~~~~~~l~~~------~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 7 QVHRKSVKKGF------EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp -----------------CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEE
T ss_pred eECCEEEEcCC------CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 45555444432 478999999999999999998875 443222 122222223333334445678999
Q ss_pred EEcCCc-------hhhhcccc-------ccccCcc-----------EEEEEEeCCC-HhhHHHHH-HHHHHhhhcCCCeE
Q 040295 103 WMAHLH-------EEFSIRSL-------PISDQLT-----------ALVMVFNLND-LSTLDALK-HWVPSIDLQKFEIL 155 (289)
Q Consensus 103 ~Dt~G~-------e~~~~~~~-------~~~~~ad-----------~vIlV~Dv~~-~~S~~~l~-~~~~~i~~~~~~~i 155 (289)
|||+|+ +.+..+.. .+++.+. +.+++|..+. ..+|+.+. .++..+. ...++
T Consensus 81 ~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~--~~~~i 158 (301)
T 2qnr_A 81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH--NKVNI 158 (301)
T ss_dssp EEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT--TTSCE
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH--hcCCE
Confidence 999998 55554443 3333222 1123333332 12344433 2333332 22379
Q ss_pred EEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCC
Q 040295 156 LCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASN 235 (289)
Q Consensus 156 ivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~ 235 (289)
++|+||.|+... +++ ...++.+.+++..++++|+++||++
T Consensus 159 ilV~~K~Dl~~~--------~e~--------------------------------~~~~~~~~~~~~~~~~~~~e~Sa~~ 198 (301)
T 2qnr_A 159 VPVIAKADTLTL--------KER--------------------------------ERLKKRILDEIEEHNIKIYHLPDAE 198 (301)
T ss_dssp EEEECCGGGSCH--------HHH--------------------------------HHHHHHHHHHHHHTTCCCCCCC---
T ss_pred EEEEEeCCCCCH--------HHH--------------------------------HHHHHHHHHHHHHcCCeEEecCCcc
Confidence 999999999641 111 1123447889999999999999998
Q ss_pred CcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 236 VDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+ +++++|..+.+.+...
T Consensus 199 ~-------------~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 199 S-------------DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp -------------------CHHHHHHHHTT
T ss_pred c-------------cccHHHHHHHHHhhcC
Confidence 6 7888888888777543
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.63 E-value=9.4e-16 Score=161.28 Aligned_cols=172 Identities=12% Similarity=0.067 Sum_probs=109.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC-------CCCC-------CCCCCcceEE--eeEEeecCcceEEEEEEEcCCchh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV-------NFED-------ASDSSSELLV--NGWTINTKYYTADVSLWMAHLHEE 110 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~-------~~~~-------~~~~t~~~~~--~~~~i~~~~~~~~l~I~Dt~G~e~ 110 (289)
.+.++|+++|++++|||||+++|++. .+.. ....+.+.++ ....+. .....+.||||||++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~--~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD--TPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE--CSSCEEEEEECCCHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc--CCCEEEEEEECCChHH
Confidence 34589999999999999999999864 1100 0111222221 111222 2345789999999999
Q ss_pred hhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcc
Q 040295 111 FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDF 190 (289)
Q Consensus 111 ~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~ 190 (289)
|......+++.+|++|+|+|+++....+ ...|+..+...+.+.+|+|+||+|+... +. .+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~lgIP~IIVVINKiDLv~d-----~e--~l------------ 431 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQVGVPYIIVFLNKCDMVDD-----EE--LL------------ 431 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHHTCSCEEEEEECCTTCCC-----HH--HH------------
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHcCCCeEEEEEeecccccc-----hh--hH------------
Confidence 9887778899999999999999754332 2334445555555558889999999641 11 00
Q ss_pred cCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcC-----CeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 191 CQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHR-----IEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
+.+..++..++..++ ++++++||++|.- .... -..|+.++++.|...+.+
T Consensus 432 --------------------e~i~eEi~elLk~~G~~~~~vp~IpvSAktG~n-g~~~---w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 432 --------------------ELVEMEVRELLSQYDFPGDDTPIVRGSALKALE-GDAE---WEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp --------------------HHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTT-CCHH---HHHHHHHHHHHHHHTSCC
T ss_pred --------------------HHHHHHHHHHHHhccccccceeEEEEEeccCCC-CCcc---ccccchhhHhHHhhhcCC
Confidence 122234667777766 5799999999810 0000 004799999999886643
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.5e-16 Score=158.87 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=63.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCCcceEEeeEEeecCc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFE-------------------------------DASDSSSELLVNGWTINTKY 95 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~~ 95 (289)
...++|+|+|++++|||||+++|+..... .+..+.+........+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 34578999999999999999999642100 0001111211111122222
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCH----------hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDL----------STLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~----------~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
...+.||||||++.|......+++.+|++|+|+|+++. ++.+.+ ..+...+.+++|+|+||+|+.
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHHSSCCCEEEEEECGGGG
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHHcCCCeEEEEEeccccc
Confidence 35689999999999988888889999999999999853 333332 223344455689999999995
Q ss_pred C
Q 040295 166 P 166 (289)
Q Consensus 166 ~ 166 (289)
.
T Consensus 329 ~ 329 (592)
T 3mca_A 329 S 329 (592)
T ss_dssp T
T ss_pred c
Confidence 3
No 176
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.61 E-value=3.9e-15 Score=139.97 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=61.2
Q ss_pred ceEEEEEEEcCCchhhhccccccccCccEEEEEEeCC----------CHhhHHHHHHHHHHhhhc---CCCeEEEEeeCC
Q 040295 96 YTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLN----------DLSTLDALKHWVPSIDLQ---KFEILLCIGNKV 162 (289)
Q Consensus 96 ~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~----------~~~S~~~l~~~~~~i~~~---~~~~iivvgnK~ 162 (289)
..+.+++|||+||++|+.++..|+++++++|||||++ +..+|+.+..|+..+... ...|+||||||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 889999999999888654 334999999999
Q ss_pred CCC
Q 040295 163 DLL 165 (289)
Q Consensus 163 Dl~ 165 (289)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 994
No 177
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.61 E-value=7.4e-15 Score=140.13 Aligned_cols=156 Identities=14% Similarity=0.133 Sum_probs=101.4
Q ss_pred CCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCC----------HhhHHHHHHHHHHhhh
Q 040295 80 SSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLND----------LSTLDALKHWVPSIDL 149 (289)
Q Consensus 80 ~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~----------~~S~~~l~~~~~~i~~ 149 (289)
+|+|.......+ + .+.+++|||+||++|+.++..|+++++++|||||+++ ..+|+.+..|+..+..
T Consensus 203 ~TiGi~~~~~~~--~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFETKFQV--D--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEEEEEEE--T--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEEEEeec--C--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 355555433333 2 3789999999999999999999999999999999999 8999999999999876
Q ss_pred cC---CCeEEEEeeCCCCCCCCCchhHHHHHhh-hcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHH-----
Q 040295 150 QK---FEILLCIGNKVDLLPGHPVHAEYRRRLL-KREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEW----- 220 (289)
Q Consensus 150 ~~---~~~iivvgnK~Dl~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 220 (289)
.. ..|+||||||+|+. ..+... ......+-|++-.. ..+.. ....++.......+..|
T Consensus 279 ~~~~~~~piiLvgNK~DL~--------~~ki~~~~~~l~~~fp~y~~~--~~~~~---~~~~~g~~~~~~~a~~fi~~kF 345 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLL--------AEKVLAGKSKIEDYFPEFARY--TTPED---ATPEPGEDPRVTRAKYFIRDEF 345 (402)
T ss_dssp CTTCSSCCEEEEEECHHHH--------HHHHHHCSSCGGGTCGGGGTC--CCCSS---CCCCTTCCHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEEChhhh--------hhhhcccccchhhcccccccc--ccccc---cccccCCcccHHHHHHHHHHHH
Confidence 52 33999999999993 223210 00111233333110 00000 00000110112234444
Q ss_pred HHH--------cCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 221 CTE--------HRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 221 ~~~--------~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
+.. +++.+++|||+++ .||+++|.++...++.
T Consensus 346 ~~~~~~~~~~~~~~~~~~TSA~d~------------~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 346 LRISTASGDGRHYCYPHFTCAVDT------------ENIRRVFNDCRDIIQR 385 (402)
T ss_dssp HHHHHTSCTTSSCEEEEECCTTCH------------HHHHHHHHHHHHHHHH
T ss_pred HHhhccccccCcccEEEEEEeecC------------cCHHHHHHHHHHHHHH
Confidence 232 2466789999999 9999999998876653
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.60 E-value=2.7e-15 Score=134.55 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=79.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhcccccccc-----
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFED--ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISD----- 120 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~----- 120 (289)
..++|+++|.+|||||||+++|++..+.. .+..+ ........+... ...+.+|||||++.|......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMG--GFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEEC--CeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 45899999999999999999999987532 22221 111122222333 347999999999888766554443
Q ss_pred ----CccEEEEEEeCCCHhhHHHH-HHHHHHhhhcCC----CeEEEEeeCCCCCC
Q 040295 121 ----QLTALVMVFNLNDLSTLDAL-KHWVPSIDLQKF----EILLCIGNKVDLLP 166 (289)
Q Consensus 121 ----~ad~vIlV~Dv~~~~S~~~l-~~~~~~i~~~~~----~~iivvgnK~Dl~~ 166 (289)
.+|++++|++++... +... ..|+..+..... .|+++|+||+|+.+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999997654 4433 366666655422 38999999999964
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.60 E-value=5.1e-15 Score=149.62 Aligned_cols=119 Identities=12% Similarity=-0.034 Sum_probs=80.2
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----------------cceEEeeEEeecCcceEEEEEEEcCCc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSS----------------SELLVNGWTINTKYYTADVSLWMAHLH 108 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t----------------~~~~~~~~~i~~~~~~~~l~I~Dt~G~ 108 (289)
......+|+|+|++|+|||||+++|++.........+ .+..+...........+.+.+|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 3456679999999999999999999854322100000 011111111122223568999999999
Q ss_pred hhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 109 EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 109 e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
+.|......+++.+|++++|+|.++....... .|+..+... ..|+|+|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~-~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL-GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT-TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc-cCCEEEEecCCchh
Confidence 99988888889999999999999876544433 333444433 34788899999996
No 180
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.60 E-value=3.5e-15 Score=140.73 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=101.2
Q ss_pred HHHHhcCCCCCC-------CCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCC-----
Q 040295 66 LSRLLSVNFEDA-------SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLND----- 133 (289)
Q Consensus 66 i~rl~~~~~~~~-------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~----- 133 (289)
+.|+...++.+. ..+|.|.......+ + .+.+.+|||+||+.++..+..|+++++++|||||+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~--~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l 241 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHEYDFEI--K--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEE--T--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEEEEeee--C--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence 566666665543 34566665543333 2 4789999999999999999999999999999999998
Q ss_pred -----HhhHHHHHHHHHHhhhc---CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccCCCCCC
Q 040295 134 -----LSTLDALKHWVPSIDLQ---KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEGSSLLG 205 (289)
Q Consensus 134 -----~~S~~~l~~~~~~i~~~---~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
..+|+....|+..+... ...|+||||||+|+.. .++.......+-|++ +|.
T Consensus 242 ~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~---------~ki~~~~l~~~fp~y--------~g~---- 300 (362)
T 1zcb_A 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE---------EKVQVVSIKDYFLEF--------EGD---- 300 (362)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH---------HHTTTCCGGGTCTTC--------CSC----
T ss_pred cccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh---------hhccccchhhcCccc--------cCC----
Confidence 78999999999888654 3459999999999941 122111111122221 010
Q ss_pred CCCCcHHHHHHHHHHH--------H---HcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhccc
Q 040295 206 DEEPSWEIRRSCLEWC--------T---EHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWP 264 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~~--------~---~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 264 (289)
... ...+..++ . ..++.+++|||+++ .||.++|.++.+.++.
T Consensus 301 -~~~----~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~------------~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 301 -PHC----LRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT------------ENIRLVFRDVKDTILH 353 (362)
T ss_dssp -TTC----HHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH------------HHHHHHHHHHHHHHHH
T ss_pred -CCC----HHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc------------hhHHHHHHHHHHHHHH
Confidence 000 12255554 1 34578999999999 9999999999987764
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.57 E-value=1.6e-14 Score=146.66 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=82.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcc-eE---E-----eeEEe-------------------------
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSE-LL---V-----NGWTI------------------------- 91 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~-~~---~-----~~~~i------------------------- 91 (289)
...++|+|+|.+|+|||||+|+|++..+.+. ..++.. .. + .....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3568999999999999999999998876432 222221 00 0 00000
Q ss_pred -------------------ecCcce--EEEEEEEcCCchhh---hccccccccCccEEEEEEeCCCHhhHHHHHHHHHHh
Q 040295 92 -------------------NTKYYT--ADVSLWMAHLHEEF---SIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI 147 (289)
Q Consensus 92 -------------------~~~~~~--~~l~I~Dt~G~e~~---~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i 147 (289)
...... ..+.||||||.... ......+++.+|++|+|+|.+++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 000000 25899999997653 334457788999999999999988888887776666
Q ss_pred hhcCCCeEEEEeeCCCCCC
Q 040295 148 DLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 148 ~~~~~~~iivvgnK~Dl~~ 166 (289)
... ..|+++|+||+|+..
T Consensus 227 ~~~-~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 227 KGR-GLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTS-CCCEEEEEECGGGGG
T ss_pred Hhh-CCCEEEEEECccccc
Confidence 544 346999999999963
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=6.8e-15 Score=132.40 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=77.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccccc-------c--
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRSLP-------I-- 118 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~-------~-- 118 (289)
..++|+++|.+|+|||||+++|++..+.... .+.+..+.............+.+|||||++.+...... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3589999999999999999999988763211 11111111112222223467999999999776543321 1
Q ss_pred ccCccEEEEEEeCCCHhhHHHH-HHHHHHhhhc-CC---CeEEEEeeCCCCCC
Q 040295 119 SDQLTALVMVFNLNDLSTLDAL-KHWVPSIDLQ-KF---EILLCIGNKVDLLP 166 (289)
Q Consensus 119 ~~~ad~vIlV~Dv~~~~S~~~l-~~~~~~i~~~-~~---~~iivvgnK~Dl~~ 166 (289)
.+.+|++|+|||++.. ++... ..|+..+... .. .|+++|+||+|+.+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 3479999999998753 34433 3677766544 22 48999999999965
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.56 E-value=4.5e-14 Score=135.38 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=113.0
Q ss_pred ccccccCCCceEEEEcCCCCCHHHHHHHHhcCCCC-CCCC-CCcceEEeeEEeecCcceEEEEEEEcCCchh----hhcc
Q 040295 41 TDRASLEKRPGILIIGSSNVGKRTILSRLLSVNFE-DASD-SSSELLVNGWTINTKYYTADVSLWMAHLHEE----FSIR 114 (289)
Q Consensus 41 ~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~-~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~----~~~~ 114 (289)
..+........|+|+|++|||||||++++.+.... ..+. .|....... +.... ...+.+||++|... +..+
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~--V~~~~-~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV--VEVSE-EERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE--EECSS-SCEEEEEECCCCCCCGGGSCCS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE--EEecC-cceEEEEeccccccchhhhhhh
Confidence 34556666788999999999999999999987531 1121 122222222 22222 24589999999732 2222
Q ss_pred cccc---ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcC----CCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCC
Q 040295 115 SLPI---SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQK----FEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSAD 187 (289)
Q Consensus 115 ~~~~---~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~----~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~ 187 (289)
...+ +..++.+++|+|++ ...+..+..|...+.... ..|.|+|+||+|+... ..+
T Consensus 226 ~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------~~~--------- 287 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--------EAV--------- 287 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------HHH---------
T ss_pred hHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--------HHH---------
Confidence 2222 34689999999998 667888887777665542 3478888999999531 111
Q ss_pred CcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCc
Q 040295 188 PDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGM 266 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~ 266 (289)
..+..++...++.++++||+++ +|+++++++|.+.+....
T Consensus 288 ---------------------------~~l~~~l~~~g~~vi~iSA~~g------------~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 288 ---------------------------KALADALAREGLAVLPVSALTG------------AGLPALKEALHALVRSTP 327 (416)
T ss_dssp ---------------------------HHHHHHHHTTTSCEEECCTTTC------------TTHHHHHHHHHHHHHTSC
T ss_pred ---------------------------HHHHHHHHhcCCeEEEEECCCc------------cCHHHHHHHHHHHHHhcc
Confidence 1244555566789999999999 999999999999886544
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.55 E-value=1.9e-14 Score=146.09 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=82.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC--CCC------C------------CCCCCcceEEeeEEeecCcceEEEEEEEc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV--NFE------D------------ASDSSSELLVNGWTINTKYYTADVSLWMA 105 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~--~~~------~------------~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt 105 (289)
.....+|+|+|++|+|||||+++|+.. .+. . ....|+..... .+.. ..+.+.+|||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~--~~~~--~~~~i~liDT 84 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT--TCFW--KDHRINIIDT 84 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEE--EEEE--TTEEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceE--EEEE--CCeEEEEEEC
Confidence 345689999999999999999999842 110 0 11122222211 2222 2467999999
Q ss_pred CCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 106 ~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
||+..|......+++.+|++|+|+|.++..+++....|.. +... ..|+++|+||+|+...
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-KVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-TCCEEEEEECTTSTTC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-CCCEEEEEECCCcccC
Confidence 9999998888888999999999999999888887777764 3332 3478889999999753
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.54 E-value=5.2e-15 Score=138.66 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=74.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcc---eEE------------e---------------------------
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSE---LLV------------N--------------------------- 87 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~---~~~------------~--------------------------- 87 (289)
.+|+|+|++|||||||+++|++..|.+....+.. ... .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999999999887433221111 000 0
Q ss_pred ------------eEEeecCcceEEEEEEEcCCchhh-------------hccccccccCccEEEEEEeCCCHhhH-HHHH
Q 040295 88 ------------GWTINTKYYTADVSLWMAHLHEEF-------------SIRSLPISDQLTALVMVFNLNDLSTL-DALK 141 (289)
Q Consensus 88 ------------~~~i~~~~~~~~l~I~Dt~G~e~~-------------~~~~~~~~~~ad~vIlV~Dv~~~~S~-~~l~ 141 (289)
...+.. .....+.+|||||...+ ..+...|++.++++|+|+|..+.... ....
T Consensus 115 ~g~~~~~s~~~i~l~i~~-~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~ 193 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYS-PNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (360)
T ss_dssp SCTTCCCCCSCEEEEEEE-TTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred cCCCCCcccceEEEEEeC-CCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence 000000 01235899999998876 45566788999999999987543322 2222
Q ss_pred HHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 142 HWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 142 ~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
.++..+... ..|+|+|+||+|+...
T Consensus 194 ~l~~~~~~~-~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 194 KISREVDPS-GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHSCTT-CTTEEEEEECGGGCCT
T ss_pred HHHHHhccc-CCCEEEEEeCCccCCC
Confidence 333333332 3378999999999753
No 186
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.52 E-value=7e-14 Score=137.86 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------CCCCcceEEeeEEeecCcceEEEEEEEcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDA--------------------SDSSSELLVNGWTINTKYYTADVSLWMAH 106 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~--------------------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~ 106 (289)
....+|+|+|++|+|||||+++|+....... ...+.+..+........+..+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3458999999999999999999996321000 00111111111111122234679999999
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
|++.|......+++.+|++|+|+|+++...... ..++..+.. ...|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~-~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL-RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT-TTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH-cCCCEEEEEcCcCCccc
Confidence 999998877788999999999999987643322 222233332 23478999999999654
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.50 E-value=2.5e-13 Score=138.07 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=83.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCC--CCC------------------CCCCCcceEEeeEEeec---CcceEEEEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVN--FED------------------ASDSSSELLVNGWTINT---KYYTADVSL 102 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~--~~~------------------~~~~t~~~~~~~~~i~~---~~~~~~l~I 102 (289)
.....+|+|+|+.|+|||||+++|+... +.. ....|+........... .+..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456899999999999999999997531 111 01112221112222211 233478999
Q ss_pred EEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 103 WMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 103 ~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
|||||+..|......+++.+|++|+|+|.++....+....|.. .... ..|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~-~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANKY-KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHHc-CCCEEEEEeCCCcccc
Confidence 9999999998888888999999999999998776666665543 2222 3478889999999653
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.50 E-value=6.4e-14 Score=127.81 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=44.6
Q ss_pred EEEEEEEcCCchh-------------hhccccccccCccEEEEEEeCCCHh-hHHHHHHHHHHhhhcCCCeEEEEeeCCC
Q 040295 98 ADVSLWMAHLHEE-------------FSIRSLPISDQLTALVMVFNLNDLS-TLDALKHWVPSIDLQKFEILLCIGNKVD 163 (289)
Q Consensus 98 ~~l~I~Dt~G~e~-------------~~~~~~~~~~~ad~vIlV~Dv~~~~-S~~~l~~~~~~i~~~~~~~iivvgnK~D 163 (289)
..+.+|||||... +......+++.+|++|+|+|.++.. .-.....+...+.. ...|+++|+||+|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-~~~~~i~v~NK~D 209 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITKLD 209 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEECTT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-CCCcEEEEEcCcc
Confidence 4689999999753 4455567788999999999974322 11111123333332 3448999999999
Q ss_pred CCC
Q 040295 164 LLP 166 (289)
Q Consensus 164 l~~ 166 (289)
+..
T Consensus 210 l~~ 212 (315)
T 1jwy_B 210 LMD 212 (315)
T ss_dssp SSC
T ss_pred cCC
Confidence 974
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=7.1e-14 Score=133.25 Aligned_cols=85 Identities=16% Similarity=-0.015 Sum_probs=47.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCC-CCC-----CCcceEEeeEEe----------------ecCcceEEEEEEEcCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFED-ASD-----SSSELLVNGWTI----------------NTKYYTADVSLWMAHL 107 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~-----~t~~~~~~~~~i----------------~~~~~~~~l~I~Dt~G 107 (289)
+||+|+|.+|||||||+|+|++..... .+. ++.+..+..... ......+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999887321 121 122211111000 0112246799999999
Q ss_pred chh----hhcccc---ccccCccEEEEEEeCCCH
Q 040295 108 HEE----FSIRSL---PISDQLTALVMVFNLNDL 134 (289)
Q Consensus 108 ~e~----~~~~~~---~~~~~ad~vIlV~Dv~~~ 134 (289)
+.. +..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 222333 457899999999999874
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.47 E-value=9.8e-14 Score=119.86 Aligned_cols=152 Identities=16% Similarity=0.062 Sum_probs=90.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCCc----------ceEEeeEEeec----------------Ccc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDAS------DSSS----------ELLVNGWTINT----------------KYY 96 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~------~~t~----------~~~~~~~~i~~----------------~~~ 96 (289)
..+|+|+|.+|||||||+++|+........ .+.. +... ..+.. ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKA--EAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEE--EECCCTTCSSCCHHHHHTTGGGGT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcE--EEecCCceeecccHHHHHHHHhcC
Confidence 468999999999999999999865321100 0000 0000 11111 112
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHH
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRR 176 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r 176 (289)
.+.+.+|||+|+-.... .+...++++|+|+|++..... ...+...+ ..|+++|+||+|+.+ .+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----~~~~iiv~NK~Dl~~--------~~ 170 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEIF----RVADLIVINKVALAE--------AV 170 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHHH----HTCSEEEEECGGGHH--------HH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhhh----hcCCEEEEecccCCc--------ch
Confidence 35789999999611111 122357899999998765321 11122211 236788999999942 11
Q ss_pred HhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHc--CCeEEEeecCCCcccccccCCCCchhHHHH
Q 040295 177 RLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEH--RIEYIEACASNVDFDKCLSIDGDSQGVERL 254 (289)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l 254 (289)
.. ... .+..++... +++++++||++| .|++++
T Consensus 171 ~~------------------------------~~~----~~~~~~~~~~~~~~i~~~Sa~~g------------~gi~~l 204 (221)
T 2wsm_A 171 GA------------------------------DVE----KMKADAKLINPRAKIIEMDLKTG------------KGFEEW 204 (221)
T ss_dssp TC------------------------------CHH----HHHHHHHHHCTTSEEEECBTTTT------------BTHHHH
T ss_pred hh------------------------------HHH----HHHHHHHHhCCCCeEEEeecCCC------------CCHHHH
Confidence 01 001 133334333 478999999999 999999
Q ss_pred HHHHHHhcccC
Q 040295 255 YGALSAHMWPG 265 (289)
Q Consensus 255 ~~~L~~~~~~~ 265 (289)
|++|.+.+...
T Consensus 205 ~~~l~~~~~~~ 215 (221)
T 2wsm_A 205 IDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 191
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.46 E-value=2.4e-13 Score=137.95 Aligned_cols=116 Identities=19% Similarity=0.124 Sum_probs=82.2
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc--CCCCCC------------------CCCCcceEEeeEEeecCcceEEEEEEEc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS--VNFEDA------------------SDSSSELLVNGWTINTKYYTADVSLWMA 105 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~--~~~~~~------------------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt 105 (289)
.....+|+|+|++|+|||||+++|+. +.+... ...|..... ..+... ...+.+|||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~--~~~~~~--~~~i~liDT 82 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAA--TTAAWE--GHRVNIIDT 82 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSE--EEEEET--TEEEEEECC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeee--EEEEEC--CeeEEEEEC
Confidence 44568999999999999999999985 222100 001111111 112222 467999999
Q ss_pred CCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 106 HLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 106 ~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
||+..|......+++.+|++|+|+|.++..+++....|.. +... ..|+++|+||+|+...
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~-~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY-GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT-TCCEEEEEECTTSTTC
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc-CCCEEEEEECCCcccc
Confidence 9999988877788999999999999998888877776654 3333 3478889999999753
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=1.1e-12 Score=123.49 Aligned_cols=84 Identities=15% Similarity=-0.004 Sum_probs=55.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCC-CC-CCcceEEeeEEeecCc-------------ceEEEEEEEcCCchhhh--
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDA-SD-SSSELLVNGWTINTKY-------------YTADVSLWMAHLHEEFS-- 112 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~-~t~~~~~~~~~i~~~~-------------~~~~l~I~Dt~G~e~~~-- 112 (289)
++|+|+|.+|||||||+|++++..+... +. .|.........+.... ....+.+|||||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 7999999999999999999998774221 21 2333322222222110 02469999999997653
Q ss_pred --ccccc---cccCccEEEEEEeCCC
Q 040295 113 --IRSLP---ISDQLTALVMVFNLND 133 (289)
Q Consensus 113 --~~~~~---~~~~ad~vIlV~Dv~~ 133 (289)
.+... +++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 33333 4789999999999985
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.43 E-value=6.1e-16 Score=134.28 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSE 83 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~ 83 (289)
..++|+|+|++|||||||+++|+...+...+..+++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~ 72 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA 72 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence 347999999999999999999998765443333333
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.42 E-value=7.4e-14 Score=130.63 Aligned_cols=117 Identities=13% Similarity=0.150 Sum_probs=69.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-C--cce-EEe-----------------------------------
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASD-S-S--SEL-LVN----------------------------------- 87 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~-~-t--~~~-~~~----------------------------------- 87 (289)
..++|+|+|.+|||||||+++|++..+.+... . | .+. ...
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999988743211 0 0 000 000
Q ss_pred -----------eEEeecCcceEEEEEEEcCCch-------------hhhccccccccCccEEEE-EEeCCCHhhHHHHHH
Q 040295 88 -----------GWTINTKYYTADVSLWMAHLHE-------------EFSIRSLPISDQLTALVM-VFNLNDLSTLDALKH 142 (289)
Q Consensus 88 -----------~~~i~~~~~~~~l~I~Dt~G~e-------------~~~~~~~~~~~~ad~vIl-V~Dv~~~~S~~~l~~ 142 (289)
...+... ....+.+|||||.. .+..+...|++.++.+|+ |.|.+....-.....
T Consensus 110 g~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred ccCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0000000 12468999999963 455566677766665555 555543222122223
Q ss_pred HHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 143 WVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 143 ~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
++..+.. ...|+++|+||+|+..
T Consensus 189 i~~~~~~-~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 189 VAKEVDP-QGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHCT-TCTTEEEEEECGGGSC
T ss_pred HHHHhCc-CCCceEEEeccccccC
Confidence 4444433 2348899999999975
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.37 E-value=5e-13 Score=138.34 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=85.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC------------CCC----C--CCCCcceEEeeEEee------------cCcc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN------------FED----A--SDSSSELLVNGWTIN------------TKYY 96 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~------------~~~----~--~~~t~~~~~~~~~i~------------~~~~ 96 (289)
....+|+|+|+.++|||||+++|+... +.+ + ...|+.......... .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 345789999999999999999998641 111 0 111332222222222 1334
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
.+.+.||||||+..|......+++.+|++|+|+|+++..+++....|..... ...|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 6789999999999999888889999999999999999988888777765432 234788899999985
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=5.8e-13 Score=131.90 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=81.9
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCCcceEEeeEEeecC-----------------------c----
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFE---DASDSSSELLVNGWTINTK-----------------------Y---- 95 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~---~~~~~t~~~~~~~~~i~~~-----------------------~---- 95 (289)
....++|+|+|.+|||||||+|+|++..+. ....++... ......... +
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 455689999999999999999999998863 122222211 100000000 0
Q ss_pred -c----------eEEEEEEEcCCchh-----------hhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC
Q 040295 96 -Y----------TADVSLWMAHLHEE-----------FSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE 153 (289)
Q Consensus 96 -~----------~~~l~I~Dt~G~e~-----------~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~ 153 (289)
. ...+.+|||||... |......+++.+|++|+|+|+++....+....|+..+.... .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~ 219 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE-D 219 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG-G
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC-C
Confidence 0 02588999999864 44555567888999999999988666666677777776433 4
Q ss_pred eEEEEeeCCCCCC
Q 040295 154 ILLCIGNKVDLLP 166 (289)
Q Consensus 154 ~iivvgnK~Dl~~ 166 (289)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 7899999999975
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.35 E-value=4.9e-13 Score=125.24 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=67.2
Q ss_pred eEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHH
Q 040295 97 TADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRR 176 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r 176 (289)
.+.+.||||||..... ......+|++|+|+|.+..+.++.+..+ + ...|+++|+||+|+.+. ....
T Consensus 171 ~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~---~~~p~ivVlNK~Dl~~~-----~~~~ 236 (355)
T 3p32_A 171 GFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIKKG---V---LELADIVVVNKADGEHH-----KEAR 236 (355)
T ss_dssp TCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCCTT---S---GGGCSEEEEECCCGGGH-----HHHH
T ss_pred CCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHHHh---H---hhcCCEEEEECCCCcCh-----hHHH
Confidence 3578999999943211 1235789999999998766555333211 1 11278889999999421 0111
Q ss_pred HhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHH-------HcCCeEEEeecCCCcccccccCCCCch
Q 040295 177 RLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCT-------EHRIEYIEACASNVDFDKCLSIDGDSQ 249 (289)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ie~Sa~~~~~~~~~~~~~~~~ 249 (289)
.. .+....... .++.+++++||++| .
T Consensus 237 ~~-----------------------------------~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g------------~ 269 (355)
T 3p32_A 237 LA-----------------------------------ARELSAAIRLIYPREALWRPPVLTMSAVEG------------R 269 (355)
T ss_dssp HH-----------------------------------HHHHHHHHHHHSTTCCSCCCCEEEEBGGGT------------B
T ss_pred HH-----------------------------------HHHHHHHHhhccccccCCCCceEEEEcCCC------------C
Confidence 11 011111111 12578999999999 9
Q ss_pred hHHHHHHHHHHhcc
Q 040295 250 GVERLYGALSAHMW 263 (289)
Q Consensus 250 ~i~~l~~~L~~~~~ 263 (289)
|+++++++|.+.+.
T Consensus 270 Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 270 GLAELWDTVERHRQ 283 (355)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988763
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.29 E-value=8e-12 Score=117.96 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=54.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCC-CCCCC-CcceEEeeEEeec------------C-----cceEEEEEEEcCCchh
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFE-DASDS-SSELLVNGWTINT------------K-----YYTADVSLWMAHLHEE 110 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~-~~~~~-t~~~~~~~~~i~~------------~-----~~~~~l~I~Dt~G~e~ 110 (289)
++|+|+|.+|||||||++++.+.... ..+.. |.........+.. . .....+.+|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999999976421 11111 2221111112111 0 1235699999999876
Q ss_pred hhc----ccc---ccccCccEEEEEEeCCC
Q 040295 111 FSI----RSL---PISDQLTALVMVFNLND 133 (289)
Q Consensus 111 ~~~----~~~---~~~~~ad~vIlV~Dv~~ 133 (289)
+.+ +.. .+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 222 34789999999999974
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.27 E-value=2.3e-12 Score=120.17 Aligned_cols=124 Identities=11% Similarity=-0.008 Sum_probs=69.1
Q ss_pred cCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC------CCC-----CCCCCCcce----------------E
Q 040295 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV------NFE-----DASDSSSEL----------------L 85 (289)
Q Consensus 33 ~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~------~~~-----~~~~~t~~~----------------~ 85 (289)
|+...+..+.+........|+++|++|+|||||++.+.+. ... .....+.+. -
T Consensus 40 ~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~ 119 (341)
T 2p67_A 40 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAA 119 (341)
T ss_dssp HHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTE
T ss_pred hHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCc
Confidence 4444455445566677889999999999999999999631 100 000000000 0
Q ss_pred EeeEEee------------------cCcceEEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHh
Q 040295 86 VNGWTIN------------------TKYYTADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSI 147 (289)
Q Consensus 86 ~~~~~i~------------------~~~~~~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i 147 (289)
+. .... .....+.+.||||||...+.. ...+.+|++++|+|.+....++.+.... .
T Consensus 120 ~i-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~~--~ 193 (341)
T 2p67_A 120 FI-RPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGL--M 193 (341)
T ss_dssp EE-EEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHH--H
T ss_pred ee-ecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHhh--h
Confidence 00 0000 001135699999999654432 2357899999999997654432221110 1
Q ss_pred hhcCCCeEEEEeeCCCCCC
Q 040295 148 DLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 148 ~~~~~~~iivvgnK~Dl~~ 166 (289)
..|+++|+||+|+..
T Consensus 194 ----~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 194 ----EVADLIVINKDDGDN 208 (341)
T ss_dssp ----HHCSEEEECCCCTTC
T ss_pred ----cccCEEEEECCCCCC
Confidence 126788999999953
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.26 E-value=1.1e-10 Score=103.39 Aligned_cols=68 Identities=19% Similarity=0.023 Sum_probs=41.0
Q ss_pred EEEEEEEcCCchhhhcccc------ccccCccEEEEEEeCCC---HhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 98 ADVSLWMAHLHEEFSIRSL------PISDQLTALVMVFNLND---LSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 98 ~~l~I~Dt~G~e~~~~~~~------~~~~~ad~vIlV~Dv~~---~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+.+.||||||+..+..... ..+.. +++|+|.|... +..+.....+..........|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 4799999999976543321 13455 88888888653 333333222222211222347889999999964
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=115.26 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=34.1
Q ss_pred EEEEEEEcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 98 ADVSLWMAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 98 ~~l~I~Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
+.+.++||+|.... .......+|++++|+|.+.+...+.+..+ + . ..|.++|.||+|+.
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~~---i--l-~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKRG---I--I-EMADLVAVTKSDGD 225 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-----------------C-CSCSEEEECCCSGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHHH---H--H-hcCCEEEEeeecCC
Confidence 46899999995311 12346689999999999876543333221 1 1 12667889999995
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.21 E-value=8.5e-12 Score=116.29 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=33.1
Q ss_pred cCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 33 ~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
|+...+++..++....+..++|+|++|||||||++.+.+
T Consensus 39 ~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 39 AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444566777788888899999999999999999999973
No 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.15 E-value=1.4e-10 Score=106.32 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=80.1
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHh-hHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLS-TLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESS 185 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~-S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~ 185 (289)
.+++++.+.+.+++++|++++|||++++. ++..+..|+..+... ..|+++|+||+|+.+. +.+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~-~~~~ilV~NK~DL~~~--------~~v------- 128 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF-KVEPVIVFNKIDLLNE--------EEK------- 128 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT-TCEEEEEECCGGGCCH--------HHH-------
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC-CCCEEEEEEcccCCCc--------ccc-------
Confidence 37899999999999999999999999886 999999999887763 3477889999999641 111
Q ss_pred CCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 186 ADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
.....+..++...+++++++||+++ .|+++++..+...
T Consensus 129 --------------------------~~~~~~~~~~~~~g~~~~~~SA~~g------------~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 129 --------------------------KELERWISIYRDAGYDVLKVSAKTG------------EGIDELVDYLEGF 166 (302)
T ss_dssp --------------------------HHHHHHHHHHHHTTCEEEECCTTTC------------TTHHHHHHHTTTC
T ss_pred --------------------------HHHHHHHHHHHHCCCeEEEEECCCC------------CCHHHHHhhccCc
Confidence 0011255667777899999999999 9999999887543
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.06 E-value=1.1e-09 Score=108.32 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=77.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCC------------------CCC----CCCCCcceEEeeEEeecCcceEEEEEE
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVN------------------FED----ASDSSSELLVNGWTINTKYYTADVSLW 103 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~------------------~~~----~~~~t~~~~~~~~~i~~~~~~~~l~I~ 103 (289)
..+.=.|+|+|+.++|||||..+++... +.+ +....+........+.. ..+.++|.
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEE
Confidence 3344569999999999999999997211 111 11111111111222223 34679999
Q ss_pred EcCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 104 MAHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 104 Dt~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
||||+..|..-....++-+|++|+|+|....-.-+....|... ...+- |+|++.||+|...
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~~l-p~i~fINK~Dr~~ 166 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMRAT-PVMTFVNKMDREA 166 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHTTC-CEEEEEECTTSCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HHhCC-ceEEEEecccchh
Confidence 9999999987777778899999999999876555555556433 33333 6788999999854
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.98 E-value=1.4e-09 Score=111.10 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=71.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCcc--eEE--------------------------------------
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDA-SDSSSE--LLV-------------------------------------- 86 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~-~~~t~~--~~~-------------------------------------- 86 (289)
..++|+|+|..++|||||+|.+++..+.+. ...++. ...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 347999999999999999999999887321 111110 000
Q ss_pred ----------eeEEeecCcceEEEEEEEcCCchh-------------hhccccccc-cCccEEEEEEeCCCHhhHHHHHH
Q 040295 87 ----------NGWTINTKYYTADVSLWMAHLHEE-------------FSIRSLPIS-DQLTALVMVFNLNDLSTLDALKH 142 (289)
Q Consensus 87 ----------~~~~i~~~~~~~~l~I~Dt~G~e~-------------~~~~~~~~~-~~ad~vIlV~Dv~~~~S~~~l~~ 142 (289)
....+.... ...+.++||||... +..+...|+ ..+|++++|.|.+....-.....
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000000000 12467899999543 223334444 57899999999986533333323
Q ss_pred HHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 143 WVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 143 ~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
++..+... ..|+|+|.||+|+.+.
T Consensus 209 ll~~L~~~-g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 209 IAKEVDPQ-GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHCTT-CSSEEEEEECTTSSCT
T ss_pred HHHHHHhc-CCCEEEEEeCcccCCc
Confidence 44444433 3489999999999753
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.97 E-value=4.5e-10 Score=106.87 Aligned_cols=93 Identities=12% Similarity=-0.003 Sum_probs=50.4
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCcceEEeeEEeecC-------------cceEEEEEEEcCCch
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNFEDASD--SSSELLVNGWTINTK-------------YYTADVSLWMAHLHE 109 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~--~t~~~~~~~~~i~~~-------------~~~~~l~I~Dt~G~e 109 (289)
.....++|+|+|.+|||||||+|++.+..+..... .|.........+... .....+.+|||||+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34456899999999999999999999886532211 122222222222211 012358999999988
Q ss_pred hhhc-------cccccccCccEEEEEEeCCCHhhH
Q 040295 110 EFSI-------RSLPISDQLTALVMVFNLNDLSTL 137 (289)
Q Consensus 110 ~~~~-------~~~~~~~~ad~vIlV~Dv~~~~S~ 137 (289)
.+.+ ....+++.+|++++|+|+++.+++
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 6554 223567899999999999865544
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.2e-08 Score=96.50 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=71.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhc----ccc---c
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVNFED-ASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSI----RSL---P 117 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~----~~~---~ 117 (289)
.....+|+|+|.||||||||+|++++..... .+..|+-... .-.+... ...+++.||||.-.-.. +.. .
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~-~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTV-PGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEE-EEEEEET--TEEEEEEECGGGCCC-----CHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeee-eEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHH
Confidence 3445689999999999999999999876432 2333222222 2223333 35689999999632111 111 3
Q ss_pred cccCccEEEEEEeCCCHhh-HHHHHHHHHHhhh-cCCCeEEEEeeCCCCC
Q 040295 118 ISDQLTALVMVFNLNDLST-LDALKHWVPSIDL-QKFEILLCIGNKVDLL 165 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S-~~~l~~~~~~i~~-~~~~~iivvgnK~Dl~ 165 (289)
.++.+|++++|.|+++|.. ++.+..-+..+.. ...+|.+++.||.|..
T Consensus 146 ~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3678999999999998732 2333332332221 2334667789999963
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.79 E-value=2.6e-09 Score=107.45 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=74.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC--CCCC----CCCCCc----------ceEEeeEEeecCcceEEEEEEEcCCchhhhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV--NFED----ASDSSS----------ELLVNGWTINTKYYTADVSLWMAHLHEEFSI 113 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~--~~~~----~~~~t~----------~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~ 113 (289)
-+|+|+|+.++|||||..+++.. .... ....+. |.......+......+.++|.||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 35899999999999999999731 1110 000000 1111111112223345689999999999988
Q ss_pred cccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCC
Q 040295 114 RSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPG 167 (289)
Q Consensus 114 ~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~ 167 (289)
-....++-+|++|+|+|....-.-+....|.. ....+- |.|++.||+|....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~~l-p~i~~INKmDr~~a 134 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKMGI-PTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHHTC-SCEECCEECCSSSC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHcCC-CeEEEEeccccccC
Confidence 77777899999999999986544343444443 333344 45668999998643
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.77 E-value=6.4e-08 Score=98.39 Aligned_cols=115 Identities=19% Similarity=0.131 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC--------CCCC----------CCCCCcceEEeeEEeec-----CcceEEEEEEEcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV--------NFED----------ASDSSSELLVNGWTINT-----KYYTADVSLWMAH 106 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~--------~~~~----------~~~~t~~~~~~~~~i~~-----~~~~~~l~I~Dt~ 106 (289)
=.|+|+|+.++|||||..+|+.. .... +....+........+.. .+..+.++|.|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 35999999999999999999731 1110 11111111111222222 2235789999999
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
|+-.|..-....++-+|++|+|+|+...-.-+....|....+ .+- |.+++.||+|...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~~l-p~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-YGV-PRIVYVNKMDRQG 151 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-HTC-CEEEEEECSSSTT
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-cCC-CeEEEEccccccC
Confidence 999998777777889999999999986655544445544433 333 5677899999854
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.73 E-value=6.2e-09 Score=90.95 Aligned_cols=107 Identities=8% Similarity=-0.077 Sum_probs=66.2
Q ss_pred cCCchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHH----HHhhhc---CCCeEEEEeeCC-CCCCCCCchhHHHH
Q 040295 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWV----PSIDLQ---KFEILLCIGNKV-DLLPGHPVHAEYRR 176 (289)
Q Consensus 105 t~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~----~~i~~~---~~~~iivvgnK~-Dl~~~~~~~~~~~r 176 (289)
.+||+.++.+|+.|+.++||+|||.|.+|.+-++ .+.-+ ..+... ..-|++|.+||. |+ ++.....+...
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl-p~Ams~~EI~e 186 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD-VKRMPCFYLAH 186 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT-SCBCCHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc-cCCCCHHHHHH
Confidence 3489999999999999999999999999886554 33222 222221 334999999996 66 43332222222
Q ss_pred HhhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHH
Q 040295 177 RLLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYG 256 (289)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~ 256 (289)
.+ . ...+ ...+.+..|||++| +|+.+.++
T Consensus 187 ~L--------------------------~-----------L~~l--~R~W~Iq~csA~TG------------eGL~EGLd 215 (227)
T 3l82_B 187 EL--------------------------H-----------LNLL--NHPWLVQDTEAETL------------TGFLNGIE 215 (227)
T ss_dssp HT--------------------------T-----------GGGG--CSCEEEEEEETTTC------------TTHHHHHH
T ss_pred Hc--------------------------C-----------CcCC--CCCEEEEEeECCCC------------cCHHHHHH
Confidence 22 0 1111 13456789999999 99999999
Q ss_pred HHHHhccc
Q 040295 257 ALSAHMWP 264 (289)
Q Consensus 257 ~L~~~~~~ 264 (289)
||+..+..
T Consensus 216 WL~~~l~~ 223 (227)
T 3l82_B 216 WILEEVES 223 (227)
T ss_dssp HHTTTTTT
T ss_pred HHHHHHHh
Confidence 99987643
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.61 E-value=5.2e-08 Score=91.66 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=73.0
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhc-CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESS 185 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~-~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~ 185 (289)
..++|+.+...+.+.++++++|+|++++. ..|...+... ...|+++|+||+|+.+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~---------------- 113 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSV---------------- 113 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTS----------------
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCccc----------------
Confidence 46899999999999999999999999864 4565555544 3458999999999975321
Q ss_pred CCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 186 ADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
......+....++...|+ +++++||++| .|++++++.|.+.
T Consensus 114 -----------------------~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g------------~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 114 -----------------------KHDKVKHWMRYSAKQLGLKPEDVFLISAAKG------------QGIAELADAIEYY 157 (368)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCCCSEEEECCTTTC------------TTHHHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHHHHcCCCcccEEEEeCCCC------------cCHHHHHhhhhhh
Confidence 011111123445677787 7999999999 9999999999764
No 212
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.3e-07 Score=81.80 Aligned_cols=173 Identities=16% Similarity=0.273 Sum_probs=102.5
Q ss_pred CceEEEE--cCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEE-EcCC-ch----hhhcc-ccccc
Q 040295 49 RPGILII--GSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLW-MAHL-HE----EFSIR-SLPIS 119 (289)
Q Consensus 49 ~iKI~il--G~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~-Dt~G-~e----~~~~~-~~~~~ 119 (289)
.=||+|+ |+++.|||.|++++.+.. .+..-....+.+.++||+.++.|| |.-. .+ .|.+- .....
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~------~~~~~i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR 100 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCS------STGISIVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLR 100 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCC------CCSSCEEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHH
T ss_pred CCceEEEecCcccccHHHHHHHHhccc------ccccccccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHH
Confidence 3467776 999999999999998774 233334567788999999999997 4322 11 12110 01111
Q ss_pred cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCC-eEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcc
Q 040295 120 DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFE-ILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISET 198 (289)
Q Consensus 120 ~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~-~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
.-..|+|+||+...+..++.+...+. ....+ .+++||.-.+... +.....
T Consensus 101 ~viggII~~f~~p~~~~~~~i~~~~~---~~~~dg~~v~Vg~~~~~~~------~~~de~-------------------- 151 (233)
T 3uc9_A 101 NVMAGIILITDIRQTKPQELLHQFMI---AAHRNTFVVLVNVNEEVEQ------DEIDEL-------------------- 151 (233)
T ss_dssp HTEEEEEEEECHHHHCGGGTHHHHHH---HSCTTCEEEEEECCTTCCH------HHHHHH--------------------
T ss_pred HhcceEEEEEeCCCcchHHHHHHHhc---cCCCCceEEEEecCCccCC------CchhhH--------------------
Confidence 23478999998766655555544332 22223 5555554333210 111111
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHhcccCcccccCCCC
Q 040295 199 EGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHMWPGMVLKSGDKI 274 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~ 274 (289)
.+...+|..+|++|++....... ..-..++++.|++++.++|..++|+++.++.....
T Consensus 152 ----------------~e~~~~~~~~GfE~V~~~~~~~~--~~~ne~gE~~Gi~RI~E~Le~h~W~~~~~~~~~~~ 209 (233)
T 3uc9_A 152 ----------------NEIWSNAFTNVIEFVNWKRSKPT--VNHNDYGEKLGLDRIQEIIDTHDWLNCEVQPATKI 209 (233)
T ss_dssp ----------------HHHHTTSSSSCEEEEECC----C--CCBCTTSCBCHHHHHHHHHHHCCCTTCCCBC----
T ss_pred ----------------HHHHHHHHhcCeEEEEecCCCcc--cccccccchhCHHHHHHHHHhCCCCCCcccccccc
Confidence 11334466689999987543221 11256788999999999999999999988775443
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.56 E-value=4e-07 Score=87.32 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=71.1
Q ss_pred heecCCcccccccccccCCCce--EEEEcCCCCCHHHHHHHHhcCCCCCC-C---CCCcceEEeeEEeecCcceEEEEEE
Q 040295 30 VLIFGRQEMDSTDRASLEKRPG--ILIIGSSNVGKRTILSRLLSVNFEDA-S---DSSSELLVNGWTINTKYYTADVSLW 103 (289)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~iK--I~ilG~~gvGKSSLi~rl~~~~~~~~-~---~~t~~~~~~~~~i~~~~~~~~l~I~ 103 (289)
...||... +...+.....+.. ++|+|++|+|||||++.+.+..+... . .+..............+....+.++
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEE
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchh
Confidence 34566555 7778888888877 99999999999999999998754321 1 1111111122222233333468899
Q ss_pred EcCCchhh------------------hcccccc---------ccCc--c-EEEEEEeCCCHhhHHHHHHHHHHhhhcCCC
Q 040295 104 MAHLHEEF------------------SIRSLPI---------SDQL--T-ALVMVFNLNDLSTLDALKHWVPSIDLQKFE 153 (289)
Q Consensus 104 Dt~G~e~~------------------~~~~~~~---------~~~a--d-~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~ 153 (289)
|++|.... ......+ ...+ | +++|+.|...+-+-..+ .++..+. ...
T Consensus 101 D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L~--~~~ 177 (427)
T 2qag_B 101 STVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKLD--SKV 177 (427)
T ss_dssp EEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHTC--SCS
T ss_pred hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHHh--hCC
Confidence 99864211 1111111 1122 3 35566666544333222 2333343 345
Q ss_pred eEEEEeeCCCCCC
Q 040295 154 ILLCIGNKVDLLP 166 (289)
Q Consensus 154 ~iivvgnK~Dl~~ 166 (289)
++|+|.||+|.+.
T Consensus 178 ~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 178 NIIPIIAKADAIS 190 (427)
T ss_dssp EEEEEESCGGGSC
T ss_pred CEEEEEcchhccc
Confidence 8999999999975
No 214
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.49 E-value=8.3e-08 Score=87.58 Aligned_cols=108 Identities=9% Similarity=-0.032 Sum_probs=70.8
Q ss_pred cCCchhhhccccccccCccEEEEEEeCCCHhhHH---HHHHHHHHhhh---cCCCeEEEEeeC-CCCCCCCCchhHHHHH
Q 040295 105 AHLHEEFSIRSLPISDQLTALVMVFNLNDLSTLD---ALKHWVPSIDL---QKFEILLCIGNK-VDLLPGHPVHAEYRRR 177 (289)
Q Consensus 105 t~G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~---~l~~~~~~i~~---~~~~~iivvgnK-~Dl~~~~~~~~~~~r~ 177 (289)
.+||+.++.+|+.|+.++||+|+|+|.+|.+.++ ++..+...+.. ...-|++|.+|| .|+. +.....+....
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp-~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV-KRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS-CBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc-CCCCHHHHHHH
Confidence 4689999999999999999999999999887554 22211122211 244589999997 5773 33222222222
Q ss_pred hhhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHH
Q 040295 178 LLKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGA 257 (289)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~ 257 (289)
+ . ...+ .....+..|||++| +|+.+.+++
T Consensus 273 L--------------------------~-----------L~~l--~r~W~Iq~csA~tG------------eGL~EGldW 301 (312)
T 3l2o_B 273 L--------------------------H-----------LNLL--NHPWLVQDTEAETL------------TGFLNGIEW 301 (312)
T ss_dssp T--------------------------T-----------GGGG--CSCEEEEEEETTTC------------TTHHHHHHH
T ss_pred c--------------------------C-----------CccC--CCcEEEEecccCCC------------cCHHHHHHH
Confidence 2 0 0111 13456789999999 999999999
Q ss_pred HHHhccc
Q 040295 258 LSAHMWP 264 (289)
Q Consensus 258 L~~~~~~ 264 (289)
|+..+..
T Consensus 302 L~~~l~~ 308 (312)
T 3l2o_B 302 ILEEVES 308 (312)
T ss_dssp HHHHSCC
T ss_pred HHHHHHh
Confidence 9987754
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.42 E-value=1.6e-07 Score=88.32 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=71.2
Q ss_pred CchhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhc-CCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCC
Q 040295 107 LHEEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQ-KFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESS 185 (289)
Q Consensus 107 G~e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~-~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~ 185 (289)
.++.|+....++++.++++|+|+|++++.+ .|...+... ...|+++|+||+|+.+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~--------------- 116 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVK--------------- 116 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCC---------------
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccC---------------
Confidence 588999999888899999999999998764 344444333 34589999999999753210
Q ss_pred CCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCC---eEEEeecCCCcccccccCCCCchhHHHHHHHHHHhc
Q 040295 186 ADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRI---EYIEACASNVDFDKCLSIDGDSQGVERLYGALSAHM 262 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 262 (289)
.....+....++...|+ +++++||++| +|++++++.|.+..
T Consensus 117 ------------------------~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g------------~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 117 ------------------------YPKLLRWMRRMAEELGLCPVDVCLVSAAKG------------IGMAKVMEAINRYR 160 (369)
T ss_dssp ------------------------HHHHHHHHHHHHHTTTCCCSEEEECBTTTT------------BTHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCcccEEEEECCCC------------CCHHHHHHHHHhhc
Confidence 11111113444666676 6899999999 99999999997644
No 216
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.41 E-value=3.6e-07 Score=86.75 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=56.0
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCCC-CCCCCC--CcceEEeeEEeecC-----------cc--eEEEEEEEcCCc
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVNF-EDASDS--SSELLVNGWTINTK-----------YY--TADVSLWMAHLH 108 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~-~~~~~~--t~~~~~~~~~i~~~-----------~~--~~~l~I~Dt~G~ 108 (289)
....+.+|+|+|++|||||||+|.+.+..+ .....+ |.........+... .. ...+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 445568999999999999999999999765 222112 22222222233210 00 135899999996
Q ss_pred hhhhc-------cccccccCccEEEEEEeCCC
Q 040295 109 EEFSI-------RSLPISDQLTALVMVFNLND 133 (289)
Q Consensus 109 e~~~~-------~~~~~~~~ad~vIlV~Dv~~ 133 (289)
....+ .....++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 43221 12234678999999999863
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.28 E-value=1.5e-06 Score=78.29 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCCcceEEeeEEeecCcceEEEEEEEcCCchhh--------
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFEDA---------SDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF-------- 111 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~~~---------~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~-------- 111 (289)
.++++|+|++|+|||||++.+.+...... ...+.............+....+.++|++|....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 37899999999999999999997543211 0011111111111111222336788998863110
Q ss_pred ----------hcc----------ccccccCccEEEEEEeCC-CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 112 ----------SIR----------SLPISDQLTALVMVFNLN-DLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 112 ----------~~~----------~~~~~~~ad~vIlV~Dv~-~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
... ....+..+++++++.|-. .+-.-.. ...+..+... .++|+|.+|+|.+.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~~--~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSKV--VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHTT--SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHhc--CcEEEEEeccccCC
Confidence 000 011133468888888854 2211111 2333444433 58999999999975
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.19 E-value=1.1e-06 Score=86.04 Aligned_cols=114 Identities=16% Similarity=0.059 Sum_probs=61.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHh------cCCCC----CCCCCCc-----------ceEEeeEEee-------------c
Q 040295 48 KRPGILIIGSSNVGKRTILSRLL------SVNFE----DASDSSS-----------ELLVNGWTIN-------------T 93 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~------~~~~~----~~~~~t~-----------~~~~~~~~i~-------------~ 93 (289)
....|+|+|.+||||||++++|. +.+.. +.+.+.. +..++..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998 33321 0011100 1111110000 0
Q ss_pred CcceEEEEEEEcCCchhhhc-ccc---cc--ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeE-EEEeeCCCCCC
Q 040295 94 KYYTADVSLWMAHLHEEFSI-RSL---PI--SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEIL-LCIGNKVDLLP 166 (289)
Q Consensus 94 ~~~~~~l~I~Dt~G~e~~~~-~~~---~~--~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~i-ivvgnK~Dl~~ 166 (289)
....+++.|+||||...... +.. .. ...+|.+++|+|.+........ ...+... .|+ ++|.||+|...
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~~--~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKDK--VDVASVIVTKLDGHA 254 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHHH--HCCCCEEEECTTSCC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHhh--cCceEEEEeCCcccc
Confidence 00235799999999753211 110 11 1268999999999865332111 2222221 243 77899999964
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.17 E-value=1.8e-06 Score=78.29 Aligned_cols=99 Identities=11% Similarity=0.016 Sum_probs=66.0
Q ss_pred EEEcCCch-hhhccccccccCccEEEEEEeCCCHhhHH--HHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHh
Q 040295 102 LWMAHLHE-EFSIRSLPISDQLTALVMVFNLNDLSTLD--ALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRL 178 (289)
Q Consensus 102 I~Dt~G~e-~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~--~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~ 178 (289)
|-..||+. .........++.+|+++.|+|+.++.+.. .+..|+ ...|+++|.||+|+.+. ..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------~~kp~ilVlNK~DL~~~--------~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------KNKPRIMLLNKADKADA--------AVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------SSSCEEEEEECGGGSCH--------HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------CCCCEEEEEECcccCCH--------HHH
Confidence 33467765 33333446688999999999999987775 455554 45688999999999641 011
Q ss_pred hhcccCCCCCcccCCCCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHH
Q 040295 179 LKREESSADPDFCQSGISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGAL 258 (289)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L 258 (289)
+....+....+++++++||+++ .|+.++++.+
T Consensus 69 ------------------------------------~~~~~~~~~~g~~~i~iSA~~~------------~gi~~L~~~i 100 (282)
T 1puj_A 69 ------------------------------------QQWKEHFENQGIRSLSINSVNG------------QGLNQIVPAS 100 (282)
T ss_dssp ------------------------------------HHHHHHHHTTTCCEEECCTTTC------------TTGGGHHHHH
T ss_pred ------------------------------------HHHHHHHHhcCCcEEEEECCCc------------ccHHHHHHHH
Confidence 0123444455789999999999 9999998887
Q ss_pred HHhc
Q 040295 259 SAHM 262 (289)
Q Consensus 259 ~~~~ 262 (289)
.+.+
T Consensus 101 ~~~l 104 (282)
T 1puj_A 101 KEIL 104 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.14 E-value=1.1e-05 Score=77.07 Aligned_cols=165 Identities=10% Similarity=0.069 Sum_probs=85.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcceEE--eeEEeecCcceEEEEEEEcCCchhhhcccccc-----ccCc
Q 040295 51 GILIIGSSNVGKRTILSRLLSVNFEDAS-DSSSELLV--NGWTINTKYYTADVSLWMAHLHEEFSIRSLPI-----SDQL 122 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~~~~~~-~~t~~~~~--~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~~~~-----~~~a 122 (289)
.++|+|++|||||||+|.+.+......- ....+... ........ ....+.+||++|...-......+ +...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 8999999999999999999985432211 11111110 01111111 11247899999853211111111 2333
Q ss_pred cEEEEEEeCC--CHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCCCCCcccC
Q 040295 123 TALVMVFNLN--DLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQSGISETEG 200 (289)
Q Consensus 123 d~vIlV~Dv~--~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
+.+++ ++.. ...... +..++.. ...|+++|.||.|++- .-+. .
T Consensus 150 ~~~~~-lS~G~~~kqrv~-la~aL~~----~~~p~~lV~tkpdlll--------LDEP---------------------t 194 (413)
T 1tq4_A 150 DFFII-ISATRFKKNDID-IAKAISM----MKKEFYFVRTKVDSDI--------TNEA---------------------D 194 (413)
T ss_dssp SEEEE-EESSCCCHHHHH-HHHHHHH----TTCEEEEEECCHHHHH--------HHHH---------------------T
T ss_pred CCeEE-eCCCCccHHHHH-HHHHHHh----cCCCeEEEEecCcccc--------cCcc---------------------c
Confidence 44444 7766 332221 2222222 2348999999998741 0000 0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHH----HcC--C-eEEEeec--CCCcccccccCCCCchhHHHHHHHHHHhcccC
Q 040295 201 SSLLGDEEPSWEIRRSCLEWCT----EHR--I-EYIEACA--SNVDFDKCLSIDGDSQGVERLYGALSAHMWPG 265 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~----~~~--~-~~ie~Sa--~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~ 265 (289)
+. -+......+.+.+.+++. ..+ . ..|.+|+ ..+ .|++++.+.+.+.+-.+
T Consensus 195 sg--LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~------------~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 195 GE--PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH------------YDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TC--CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS------------TTHHHHHHHHHHHSCGG
T ss_pred cc--CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc------------cCHHHHHHHHHHhCccc
Confidence 00 111123444445566652 333 2 4788899 555 78999999998876443
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.07 E-value=1.4e-06 Score=81.86 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=61.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC-----C-CCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc-------
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV-----N-FEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS------- 115 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~-----~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~------- 115 (289)
..+|+++|.+|||||||+|.+++. . ......+...... ..+.... .+.++||||......+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 468999999999999999999976 2 1111111111111 1222221 27899999964322111
Q ss_pred -cccc--cCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 116 -LPIS--DQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 116 -~~~~--~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
..++ +..++++++.+..+..-+..+.. +..+.. ...|++++.||.|...
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~~-~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIKG-GRRSFVCYMANELTVH 288 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES-SSEEEEEEECTTSCEE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE-EEEccC-CCceEEEEecCCcccc
Confidence 1111 56789999998743211111110 111111 2238999999999964
No 222
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.06 E-value=1.6e-06 Score=81.41 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=61.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhhhccc----c---
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVNFE-----DASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEFSIRS----L--- 116 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~~~-----~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~~~~~----~--- 116 (289)
..+|+++|.+|||||||+|++++.... .......+.+.....+.... .+.++||||......+. .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 468999999999999999999986311 11111222222222222222 17899999974332111 1
Q ss_pred -cc--ccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 117 -PI--SDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 117 -~~--~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
.+ .+..+.++++++..+..-+..+.. +..+.. ...|++++.||.|...
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~-~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG-GRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES-SSEEEEEEECTTSCEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEecC-CCceEEEEecCccccc
Confidence 11 356778888887642211111100 111111 2238999999999974
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.98 E-value=3.6e-06 Score=75.45 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF 111 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~ 111 (289)
++++++|.+|||||||+|++.+..... ...+.+.+.....+... ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence 699999999999999999999877532 22233332211112211 24799999997643
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.92 E-value=1.1e-05 Score=73.10 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=35.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCch
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHE 109 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e 109 (289)
...++|+++|.+|||||||+|++.+...... ....+.+.....+... ..+.+|||||.-
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVG---KELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeC---CCEEEEECcCcC
Confidence 3558999999999999999999998764221 1122221111111111 147899999964
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.52 E-value=4.9e-05 Score=68.01 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=58.1
Q ss_pred cccccCccEEEEEEeCCCHhhHHH--HHHHHHHhhhcCCCeEEEEeeCCCCCCCCCchhHHHHHhhhcccCCCCCcccCC
Q 040295 116 LPISDQLTALVMVFNLNDLSTLDA--LKHWVPSIDLQKFEILLCIGNKVDLLPGHPVHAEYRRRLLKREESSADPDFCQS 193 (289)
Q Consensus 116 ~~~~~~ad~vIlV~Dv~~~~S~~~--l~~~~~~i~~~~~~~iivvgnK~Dl~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 193 (289)
...++.+|++|.|+|+.++.+... +. |+ ..|.++|.||+|+.+. ..+
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-------~k~~iivlNK~DL~~~--------~~~--------------- 64 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYGVD-FS-------RKETIILLNKVDIADE--------KTT--------------- 64 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-------TSEEEEEEECGGGSCH--------HHH---------------
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-------CCCcEEEEECccCCCH--------HHH---------------
Confidence 356788999999999998866642 22 22 5588999999999641 111
Q ss_pred CCCcccCCCCCCCCCCcHHHHHHHHHHHHHcCCeEEEeecCCCcccccccCCCCchhHHHHHHHHHHh
Q 040295 194 GISETEGSSLLGDEEPSWEIRRSCLEWCTEHRIEYIEACASNVDFDKCLSIDGDSQGVERLYGALSAH 261 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~Sa~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 261 (289)
+....+....++++ .+||+++ .|++++++.|...
T Consensus 65 ---------------------~~~~~~~~~~g~~v-~iSa~~~------------~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 65 ---------------------KKWVEFFKKQGKRV-ITTHKGE------------PRKVLLKKLSFDR 98 (262)
T ss_dssp ---------------------HHHHHHHHHTTCCE-EECCTTS------------CHHHHHHHHCCCT
T ss_pred ---------------------HHHHHHHHHcCCeE-EEECCCC------------cCHHHHHHHHHHh
Confidence 01234445567887 9999999 9999998887654
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.52 E-value=7.5e-05 Score=74.32 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=38.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCc-ceEEeeEEe--ec-CcceEEEEEEEcCCchh
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSS-ELLVNGWTI--NT-KYYTADVSLWMAHLHEE 110 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~-~~~~~~~~i--~~-~~~~~~l~I~Dt~G~e~ 110 (289)
+.++|+|+|.+|||||||+|++++.........+. +.....+.. .. ......+.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34789999999999999999999886321222221 111111111 11 11234689999999754
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.48 E-value=8.1e-05 Score=71.59 Aligned_cols=114 Identities=13% Similarity=0.013 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc------CCCC----CCCCC-----------CcceEEeeEEeecC-------------
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS------VNFE----DASDS-----------SSELLVNGWTINTK------------- 94 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~------~~~~----~~~~~-----------t~~~~~~~~~i~~~------------- 94 (289)
...|+++|++||||||++..+.. .... +.+.+ ..+..++......+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999998873 1110 00111 11111111100000
Q ss_pred cceEEEEEEEcCCchhhh-----cccc-ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 95 YYTADVSLWMAHLHEEFS-----IRSL-PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 95 ~~~~~l~I~Dt~G~e~~~-----~~~~-~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
...+++.|.||+|..... .+.. .....+|.++||.|.+....-... ...+.. ..++..+|.||.|...
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHH-SCTTEEEEEECCSSCS
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHh-hCCCeEEEEECCCCcc
Confidence 112578999999953211 1110 112357899999998764332222 222322 2235567899999953
No 228
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.44 E-value=6e-06 Score=79.72 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcceEEeeEEeecCcceEEEEEEEcCCchhh--hccc--------cc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNFEDASDSSSELLVNGWTINTKYYTADVSLWMAHLHEEF--SIRS--------LP 117 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~I~Dt~G~e~~--~~~~--------~~ 117 (289)
...+|+++|.+|+||||+.++|...-... ...+.............+......+||..|++.+ +..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999997542110 1111111100000000111123468999988433 3222 44
Q ss_pred cccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCC
Q 040295 118 ISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF 152 (289)
Q Consensus 118 ~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~ 152 (289)
++..+.+.++|+|.++. +++....|+..++....
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~ 150 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGY 150 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCC
Confidence 56667888999999987 67777788777766543
No 229
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.26 E-value=0.00013 Score=63.52 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=37.7
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 12 ~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 12 KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567667888999999999999999999999999999997654
No 230
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.22 E-value=0.00017 Score=64.36 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=38.1
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567777899999999999999999999999999999998754
No 231
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.21 E-value=0.00016 Score=64.72 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=38.8
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 19 ~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 19 YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4578788999999999999999999999999999999998754
No 232
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.20 E-value=0.00017 Score=64.13 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=38.1
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 15 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567777899999999999999999999999999999998764
No 233
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.17 E-value=0.00032 Score=67.16 Aligned_cols=66 Identities=14% Similarity=-0.037 Sum_probs=38.8
Q ss_pred eEEEEEEEcCCchhhh-----ccc-cccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCC-CeEEEEeeCCCCCC
Q 040295 97 TADVSLWMAHLHEEFS-----IRS-LPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKF-EILLCIGNKVDLLP 166 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~~~-----~~~-~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~-~~iivvgnK~Dl~~ 166 (289)
.+.+.|.||||..... .+. -..+..+|.+++|.|.+.... .......+.. .. ++..+|.||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-TSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-cccCCeEEEEeCCCCcc
Confidence 3568999999964321 110 011236899999999875432 1222222332 22 44788999999864
No 234
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.16 E-value=0.00022 Score=63.83 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=37.9
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 32 ~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3567667899999999999999999999999999999998654
No 235
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.15 E-value=0.00023 Score=62.67 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=36.6
Q ss_pred ec-CCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IF-GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~-g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.| |...++++.+++..++-.++|+|++|+|||||++.+.+-.
T Consensus 10 ~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 10 AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45 4556888899999999999999999999999999998754
No 236
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.13 E-value=0.00025 Score=63.45 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=37.9
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..||...++++.++...++-.++|+|++|||||||++.+.+-
T Consensus 28 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777789999999999999999999999999999999875
No 237
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.13 E-value=0.00023 Score=66.61 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=39.6
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
..||...++++.+++..++--++|+|++|||||||++.+.+-..
T Consensus 12 ~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 45788889999999999999999999999999999999987653
No 238
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00025 Score=63.21 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=38.0
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 23 ~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 23 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567677899999999999999999999999999999998764
No 239
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.12 E-value=0.00022 Score=62.77 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=37.7
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.++...++-.++|+|++|+|||||++.+.+-.
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567667888999999999999999999999999999998754
No 240
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00023 Score=61.83 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=37.0
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||. .+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 18 ~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 18 VGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35676 7888999999999999999999999999999997754
No 241
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.12 E-value=0.00022 Score=64.35 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=38.2
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 29 ~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 29 RMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567777899999999999999999999999999999998754
No 242
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.12 E-value=0.00029 Score=61.85 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=36.4
Q ss_pred ecC--CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFG--RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g--~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|| ...+++..++...++-.++|+|++|||||||++.+.+-.
T Consensus 12 ~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 12 TWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455 356888899999999999999999999999999997654
No 243
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.11 E-value=0.00023 Score=62.96 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=37.5
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..||...++++.+++..++-.++|+|++|+|||||++.+.+-
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 11 ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356666788899999999999999999999999999999875
No 244
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.08 E-value=0.00027 Score=62.49 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=35.0
Q ss_pred CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 35 ~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
...+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456888899999999999999999999999999998764
No 245
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.06 E-value=0.0011 Score=65.96 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
..|+|+|++|||||||++.+.+-..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred CeEEEECCCCChHHHHHHHHhCCCC
Confidence 3499999999999999999998743
No 246
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.06 E-value=0.0003 Score=63.35 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=36.8
Q ss_pred eecCC-cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGR-QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~-~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..|+. ..++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 15 ~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 15 YNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34654 34889999999999999999999999999999998754
No 247
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.05 E-value=0.00031 Score=66.26 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=39.6
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
..||...++++.+++..++--++|+|++|||||||++.+.+-..
T Consensus 11 ~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 11 KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 46788889999999999999999999999999999999987653
No 248
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.04 E-value=0.00036 Score=62.64 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=36.6
Q ss_pred ecCC---cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR---QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~---~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.||. ..+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 25 ~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 25 AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4554 56888899999999999999999999999999998764
No 249
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.00 E-value=0.00038 Score=60.78 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=34.9
Q ss_pred CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 35 ~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
...+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356888899999999999999999999999999998754
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.99 E-value=0.00035 Score=60.31 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=23.6
Q ss_pred cccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 38 ~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.+++.++...++-.++|+|++|||||||++.+.+..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345677888888889999999999999999998743
No 251
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.98 E-value=0.00036 Score=61.95 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=37.4
Q ss_pred eecC-CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFG-RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g-~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..|| ...++++.++...++-.++|+|++|+|||||++.+.+-.
T Consensus 12 ~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 12 FYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466 567888899999999999999999999999999998764
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.98 E-value=0.00036 Score=61.24 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=33.7
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4788899999999999999999999999999997654
No 253
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.00043 Score=64.84 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++...+-.++|+|++|||||||++.+.+-.
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 11 KKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4577777888999999999999999999999999999998765
No 254
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.96 E-value=0.00041 Score=64.88 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=38.2
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4577777888999999999999999999999999999998765
No 255
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.96 E-value=0.00038 Score=60.86 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=23.7
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.-|...++++.++...++..|+|+|++|+|||||++.+.+
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456677888899999999999999999999999999876
No 256
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.93 E-value=0.00044 Score=64.62 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=37.5
Q ss_pred ec-CCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IF-GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~-g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.| |...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 23 ~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 23 IYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46 6667888899999999999999999999999999998765
No 257
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.92 E-value=0.00054 Score=64.81 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=37.3
Q ss_pred eec--CCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 31 LIF--GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 31 ~~~--g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
+.| |...++++.+++..++-.++|+|++|||||||++.+.+-
T Consensus 27 ~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 27 AKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 356 566789999999999999999999999999999999864
No 258
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.91 E-value=0.00054 Score=61.02 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=33.7
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.++...++-.++|+|++|+|||||++.+.+-.
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5788899999999999999999999999999998753
No 259
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.91 E-value=0.0005 Score=64.64 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=38.3
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 19 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 19 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4577777888999999999999999999999999999998765
No 260
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.87 E-value=0.00036 Score=63.85 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=36.1
Q ss_pred ecC-CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFG-RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g-~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+ ...++++.++...++-.++|+|++|+|||||++.+.+--
T Consensus 62 ~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 62 SYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 453 456888999999999999999999999999999987643
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.87 E-value=0.0002 Score=59.16 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=35.3
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.||...+++..++...++-.++++|+.|+|||||++.+.+.-
T Consensus 16 ~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456556677778888888899999999999999999998765
No 262
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.86 E-value=0.0005 Score=64.58 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=38.1
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...++++.+++...+--++|+|++|||||||++.+.+-.
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4567777888899999999999999999999999999998765
No 263
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.84 E-value=0.00063 Score=60.77 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=34.1
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..++++.++...++-.++|+|++|+|||||++.+.+-.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35788899999999999999999999999999997654
No 264
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.81 E-value=0.0008 Score=64.48 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q 040295 49 RPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
..-|+++|++||||||++..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999987
No 265
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.76 E-value=0.00054 Score=63.82 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=37.4
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||.. ++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 9 ~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 9 RKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 457766 888999999999999999999999999999998765
No 266
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.75 E-value=0.0063 Score=56.80 Aligned_cols=49 Identities=24% Similarity=0.404 Sum_probs=35.2
Q ss_pred ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 117 PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 117 ~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
....++|.+++|.+.....+...+..++-.....+.+| ++|.||+||.+
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~-iivlNK~DL~~ 174 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEP-LIVLNKIDLLD 174 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEE-EEEEECGGGCC
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCE-EEEEECccCCC
Confidence 34678999999988764455566667766555555544 77899999975
No 267
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.00064 Score=60.78 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=33.3
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..++++.++... +-.++|+|++|+|||||++.+.+-.
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 567888899999 9999999999999999999998754
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.72 E-value=0.00091 Score=56.04 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++--|+|+|++|||||||++.+.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34557999999999999999999865
No 269
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.70 E-value=0.0052 Score=55.77 Aligned_cols=65 Identities=8% Similarity=-0.121 Sum_probs=38.1
Q ss_pred eEEEEEEEcCCchh--hhc-ccc-----ccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 97 TADVSLWMAHLHEE--FSI-RSL-----PISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 97 ~~~l~I~Dt~G~e~--~~~-~~~-----~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
.+++.|.||||... ... +.. .....+|.+++|.|.+.... .......+.. ..+...+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 45789999999765 211 111 12336899999999864321 1122222322 233466789999985
No 270
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.69 E-value=0.00046 Score=64.36 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=37.7
Q ss_pred eecCCcc--cccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQE--MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~--~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||... ++++.+++..++-.++|+|++|||||||++.+.+-.
T Consensus 11 ~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 11 KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3566666 888899999999999999999999999999998765
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.64 E-value=0.0012 Score=60.39 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=39.1
Q ss_pred hhhccccccccCccEEEEEEeCCCH-hhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 110 EFSIRSLPISDQLTALVMVFNLNDL-STLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 110 ~~~~~~~~~~~~ad~vIlV~Dv~~~-~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+-+.+....+.++|.+++|+|+.+| -+...+..++-.....+. +.++|.||+||.+
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~-~~vivlnK~DL~~ 131 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDI-QPIICITKMDLIE 131 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTC-EEEEEEECGGGCC
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEECCccCc
Confidence 4444555568899999999999855 444556666655544444 5577899999975
No 272
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.63 E-value=0.0009 Score=56.72 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
+-.++|+|++|||||||++.+.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999763
No 273
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.60 E-value=0.0012 Score=58.07 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=33.1
Q ss_pred ecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.||. .+++.+++..+ -.++|+|++|+|||||++.+.+-.
T Consensus 10 ~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 10 RLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 4553 47788899888 889999999999999999998764
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0013 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
+-.++|+|++|||||||++.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346999999999999999999864
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.57 E-value=0.00095 Score=55.16 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.2
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHh
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
++...++--++++|++|||||||++.+.
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 4455666779999999999999999754
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.56 E-value=0.0014 Score=56.30 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=23.4
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++....+--|+|+|++|||||||+++|...
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3444556667999999999999999999864
No 277
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.53 E-value=0.00057 Score=62.56 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.0
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..+++..+....++-.++|+|++|+|||||++.+.+-
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4577788999999999999999999999999998754
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.51 E-value=0.0016 Score=54.93 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=22.0
Q ss_pred cccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 38 ~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..++.++.+.+.-.|+|+|++||||||+.+.+..
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3445667777777899999999999999999874
No 279
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.50 E-value=0.0014 Score=59.40 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=34.8
Q ss_pred CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 35 ~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
...++++.++...++-.++|+|++|+|||||++.+.+-.
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356888899999999999999999999999999997654
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.49 E-value=0.0016 Score=54.57 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=23.3
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..++..|+|+|++||||||+++.+.+.-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456679999999999999999997654
No 281
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.49 E-value=0.0039 Score=59.91 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..-|.|+|++++|||+|+|++++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhh
Confidence 34589999999999999999985
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.47 E-value=0.00096 Score=57.54 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=21.3
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHh-cC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLL-SV 72 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~-~~ 72 (289)
.+..+.+++..++--|+|+|++|||||||++.+. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3445677788888889999999999999999998 54
No 283
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.46 E-value=0.0015 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 040295 51 GILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+++|+|++|||||||++.+.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987643
No 284
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.45 E-value=0.0015 Score=61.21 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.1
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.+++..++--++|+|++|||||||++.+.+-.
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 5788999999999999999999999999999998765
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.45 E-value=0.0018 Score=55.15 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++.-|+|+|++|||||||++.|....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 445669999999999999999998654
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.42 E-value=0.0014 Score=57.96 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=32.9
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.+++..++...++-.++|+|++|+|||||++.+.+-.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4677788999999999999999999999999997654
No 287
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.41 E-value=0.002 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++-.|+|+|++|||||||++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34557999999999999999999875
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.40 E-value=0.0018 Score=55.00 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=23.0
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
....++--++|+|++|||||||++.+.+-.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356666779999999999999999998654
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.40 E-value=0.0018 Score=56.11 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=23.3
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.-+++++--++|+|++|||||||++.+.+..
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3455667789999999999999999998754
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.36 E-value=0.0022 Score=54.24 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=23.2
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
++..+.-|+|+|++|||||||+++|...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4455677999999999999999999754
No 291
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.32 E-value=0.0019 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++..|+|+|++|+|||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998754
No 292
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.32 E-value=0.0022 Score=54.04 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.4
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..++..|+|+|++|||||||++.+.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34566799999999999999999865
No 293
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.29 E-value=0.0025 Score=62.95 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=36.4
Q ss_pred ecCC--cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR--QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~--~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..++++.+.+..++-+++|+|++|+|||||++.+.+--
T Consensus 350 ~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4553 46888999999999999999999999999999998754
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.29 E-value=0.0015 Score=55.05 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 34 GRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 34 g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
|......+...+..++.-|+|+|++|||||||++.+.+.
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 333444445556667778999999999999999988653
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.29 E-value=0.0018 Score=53.96 Aligned_cols=21 Identities=43% Similarity=0.706 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040295 52 ILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~ 72 (289)
++|+|++|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999854
No 296
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.26 E-value=0.0024 Score=63.09 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=36.3
Q ss_pred ecCC--cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR--QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~--~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..++++.+.+..++-+++|+|++|+|||||++.+.+--
T Consensus 350 ~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 350 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4552 46888899999999999999999999999999997654
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.22 E-value=0.0023 Score=54.24 Aligned_cols=21 Identities=43% Similarity=0.706 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040295 52 ILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~ 72 (289)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999864
No 298
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.20 E-value=0.0019 Score=59.17 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=23.7
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
...++-.++|+|++|||||||+|.+.+..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 44556789999999999999999998754
No 299
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.14 E-value=0.0007 Score=58.35 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=32.5
Q ss_pred hhhheecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 27 FVRVLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 27 ~~~~~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++...||...+++.. .++-.++|+|++|+|||||++.+.+-
T Consensus 4 ~i~pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3566677776666542 45667999999999999999999875
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.12 E-value=0.0028 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++..|+|+|++|+|||||++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998763
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.08 E-value=0.0037 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.++..|+|+|++|+||||+++.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 302
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.0042 Score=61.01 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.7
Q ss_pred heecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 30 VLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+|.||.+..---.-..+.++--++|+|+.|+|||||++.+.+..
T Consensus 6 ~~~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 6 IHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 78899764322234456677779999999999999999998754
No 303
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.99 E-value=0.0016 Score=57.82 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.1
Q ss_pred ec-CCcccccccccccCC---CceEEEEcCCCCCHHHHHHHHhc
Q 040295 32 IF-GRQEMDSTDRASLEK---RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 32 ~~-g~~~~~~~~~~~~~~---~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.| +...+++..++...+ +-.|+|+|++||||||+.+.+..
T Consensus 27 ~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 27 PFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -----CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred EecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45 566788888888888 88999999999999999999864
No 304
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.98 E-value=0.0078 Score=54.53 Aligned_cols=26 Identities=38% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..+-.++++|++|||||||+|.+. ..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345568999999999999999998 54
No 305
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.97 E-value=0.0039 Score=61.89 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=35.8
Q ss_pred ecC-CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFG-RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g-~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+ ...++++.+.+..++-+++|+|++|+|||||++.+.+--
T Consensus 363 ~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred ECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 354 345888899999999999999999999999999987654
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.96 E-value=0.0048 Score=51.29 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=23.9
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
++.......|+|+|.+||||||+.+.|...
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445556678999999999999999999754
No 307
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.91 E-value=0.0021 Score=57.44 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=31.5
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..++..+.++..+.....+ ++++|++|+|||||++.+.+.
T Consensus 28 ~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 28 APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 3455556666666666666 999999999999999999864
No 308
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.90 E-value=0.0036 Score=62.03 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=33.8
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.+++.+++-.++|+|++|+|||||++.+.+--
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4788899999999999999999999999999997654
No 309
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.89 E-value=0.0033 Score=62.28 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=34.3
Q ss_pred CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 35 ~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
...++++.+++..++-+++|+|++|+|||||++.+.+--
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 346888899999999999999999999999999887543
No 310
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.83 E-value=0.0061 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+..|+|.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.81 E-value=0.0046 Score=54.98 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=26.3
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.+++..+ ..++-.++|+|++|+|||||++.+.+-
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 3444444 556667999999999999999998763
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.80 E-value=0.0053 Score=49.24 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCCHHHHHHHH
Q 040295 50 PGILIIGSSNVGKRTILSRL 69 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl 69 (289)
.-|+|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.77 E-value=0.0058 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...|+|+|++||||||+++.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.75 E-value=0.0056 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..|+|+|++||||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 315
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.74 E-value=0.0032 Score=54.86 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=28.4
Q ss_pred cCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 33 ~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
|+....+...+.....+ ++|+|++|+|||||++.+.+.
T Consensus 35 ~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 35 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 44444555555555555 999999999999999999864
No 316
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.72 E-value=0.0053 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|+|.|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998643
No 317
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.70 E-value=0.0076 Score=60.05 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=35.0
Q ss_pred eecCCc-ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQ-EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~-~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+.||.. .++.+.+ ...++-.++|+|++|+|||||++.+.+..
T Consensus 99 ~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 99 HRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 567765 3677777 78889999999999999999999998754
No 318
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.69 E-value=0.0073 Score=59.24 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=35.2
Q ss_pred eecCCc-ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQ-EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~-~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+.||.. .++.+.+ ...++-.++|+|++|+|||||++.+.+..
T Consensus 29 ~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 29 HRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567765 3677777 78899999999999999999999998754
No 319
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.69 E-value=0.0038 Score=61.64 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=33.6
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..++++.+.+..++-.++|+|++|+|||||++.+.+--
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35788899999999999999999999999999886543
No 320
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.67 E-value=0.0053 Score=64.32 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=39.0
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
..||...++++.++...++-.++|+|+.|+|||||++.+.++..
T Consensus 443 ~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45787788999999999999999999999999999999986543
No 321
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.67 E-value=0.0022 Score=59.77 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=29.1
Q ss_pred cccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 40 ~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+..+....++-.++|+|++|+|||||++.+.+--
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5566777788899999999999999999998653
No 322
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0084 Score=59.78 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=33.9
Q ss_pred hheecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 29 RVLIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 29 ~~~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
-++.||.....-.....+.++-.++|+|++|+|||||++.+.+..
T Consensus 83 ~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 83 VTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 367787654322233367788889999999999999999998754
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.65 E-value=0.0077 Score=50.68 Aligned_cols=29 Identities=31% Similarity=0.196 Sum_probs=24.2
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.....+..|+|+|++|+|||||++.+...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34555678999999999999999999764
No 324
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.65 E-value=0.0071 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q 040295 49 RPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
...|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 325
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.65 E-value=0.0045 Score=57.47 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=35.4
Q ss_pred ecC-CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFG-RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g-~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+ ...+++.. +...++-+++|+|++|+|||||++.+.+..
T Consensus 54 ~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 54 PFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455 55678777 899999999999999999999999998875
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.64 E-value=0.0054 Score=50.80 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
-++|+|++|||||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 327
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.60 E-value=0.007 Score=55.00 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.1
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.++...++--++++|++||||||+++.+.+
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 455566677899999999999999999875
No 328
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.59 E-value=0.0057 Score=58.58 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=35.2
Q ss_pred ecC-CcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFG-RQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g-~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+ ...+++.. +...++-+++|+|++|||||||++.+.+..
T Consensus 140 ~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 140 VLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 454 45678878 899999999999999999999999998764
No 329
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.58 E-value=0.0071 Score=55.22 Aligned_cols=27 Identities=30% Similarity=0.158 Sum_probs=23.7
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
...+.-|+|+|++|||||||++.+.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 566778999999999999999998764
No 330
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.58 E-value=0.0078 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+..|+|.|++||||||+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.57 E-value=0.0067 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|+|++||||||+++.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.56 E-value=0.0056 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
+-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999988754
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.54 E-value=0.0083 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..+..|+|.|.+||||||+++.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999874
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.53 E-value=0.0093 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.8
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
......|+|+|.+||||||+++.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33446799999999999999999864
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.49 E-value=0.0076 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+..|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 336
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.46 E-value=0.0084 Score=55.98 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
.+-.++|+|++|||||||+|.+.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 345799999999999999999997653
No 337
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.45 E-value=0.0071 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
+++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998764
No 338
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.44 E-value=0.0048 Score=54.67 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.3
Q ss_pred cCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 33 FGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 33 ~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
|+....+...+.....+ ++|+|++|+|||||++.+.+..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 34434444455555555 9999999999999999998643
No 339
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.44 E-value=0.008 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
++|+|+|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 340
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.41 E-value=0.0092 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..|+|+|++||||||+++.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998653
No 341
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.40 E-value=0.0072 Score=51.15 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.9
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..++--++|+|++|||||||++.+.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999999874
No 342
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.39 E-value=0.013 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344679999999999999999997
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.38 E-value=0.0089 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
++|+|+|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 344
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.38 E-value=0.008 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.-++|+|++|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 345
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.38 E-value=0.01 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|.+||||||+++.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 346
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.37 E-value=0.01 Score=48.64 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
....|+|+|.+|+||||+++.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345699999999999999999863
No 347
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.36 E-value=0.0092 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 348
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.35 E-value=0.0098 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 349
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.35 E-value=0.0088 Score=48.76 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999753
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.35 E-value=0.011 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
.++..|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999997
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.35 E-value=0.0064 Score=56.29 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=26.6
Q ss_pred cccccCC--CceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 42 DRASLEK--RPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 42 ~~~~~~~--~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.+....+ +-+++|+|++|+|||||++.+.+.-
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4555666 7799999999999999999998653
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.34 E-value=0.012 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
+..|+|+|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 353
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.28 E-value=0.0095 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+|+|+|++||||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 354
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.25 E-value=0.011 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
.+-.++++|++|||||||++.+.+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 445689999999999999999987653
No 355
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.22 E-value=0.012 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+..|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 356
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.20 E-value=0.01 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=22.4
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHh
Q 040295 45 SLEKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 45 ~~~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
-..++--++|+|++|+|||||++.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44556679999999999999999887
No 357
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.20 E-value=0.0098 Score=51.28 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=24.7
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.....++.-|+|.|+.|||||||++.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 334456678999999999999999998765
No 358
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.17 E-value=0.012 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+++|++||||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.05 E-value=0.013 Score=49.32 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..+..|+|+|++|+|||||++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 360
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.02 E-value=0.015 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 361
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.01 E-value=0.012 Score=52.45 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=30.2
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..++..+....++--++|+|++|+|||||+..+.+.-
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455666777788889999999999999999987643
No 362
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.00 E-value=0.013 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+...|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999864
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.00 E-value=0.0083 Score=64.89 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=33.0
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++++.+++..++-||+|+|++|+|||||++.+.+-
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 478899999999999999999999999999999753
No 364
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.00 E-value=0.0058 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|+|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.00 E-value=0.015 Score=50.72 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...+|+|+|++||||||++++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 366
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.94 E-value=0.017 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...|+|.|.+||||||+++.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999874
No 367
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.93 E-value=0.014 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+.|+|+|++||||||+++.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 368
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.93 E-value=0.014 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
++|+|+|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 369
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.92 E-value=0.015 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 370
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.011 Score=56.89 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.4
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++....+-.++|+|++|||||||++.+.+-
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5667778889999999999999999998864
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.89 E-value=0.016 Score=47.59 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.3
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
......++ -.+|+|+.|+|||||+..+..
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 44555566 578999999999999999864
No 372
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.89 E-value=0.014 Score=47.12 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988754
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.86 E-value=0.016 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|++||||||+++.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 374
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.84 E-value=0.016 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+.|+|+|+|||||+|.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.83 E-value=0.015 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..+..|+|+|++|+|||||++.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56678999999999999999998763
No 376
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.82 E-value=0.018 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.+.-|+|.|++||||||+++++...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5677999999999999999998753
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.81 E-value=0.017 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|++||||||+++.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 378
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.80 E-value=0.017 Score=52.21 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
....|+|+|++|||||||++.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998764
No 379
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.76 E-value=0.017 Score=47.25 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
+|+|+|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.75 E-value=0.013 Score=47.92 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=16.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 381
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.68 E-value=0.019 Score=55.81 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.1
Q ss_pred ccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 41 TDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 41 ~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..++....+-.|+|+|++|||||||++.+.+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 3556667777899999999999999999874
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.66 E-value=0.02 Score=46.15 Aligned_cols=21 Identities=38% Similarity=0.349 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 383
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.64 E-value=0.023 Score=46.85 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+..|+|+|.+|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 384
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.59 E-value=0.018 Score=55.81 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=28.9
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+++..++...+ -.++|+|++|||||||++.+.+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 445667788888 7899999999999999999875
No 385
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.58 E-value=0.022 Score=47.09 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.56 E-value=0.0077 Score=50.58 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 387
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.55 E-value=0.023 Score=47.12 Aligned_cols=24 Identities=33% Similarity=0.202 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
...|+|.|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999999999765
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.54 E-value=0.018 Score=48.55 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.2
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..++--++|+|++|+|||||+..+...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344556999999999999999999843
No 389
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.53 E-value=0.021 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..-|+|+|++||||||+++++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999975
No 390
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.52 E-value=0.011 Score=62.08 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.8
Q ss_pred ecCC--cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 32 IFGR--QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 32 ~~g~--~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.|+. ..++++.++....+-.++|+|+.|+|||||++.+.+..
T Consensus 680 ~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4543 35788889999999999999999999999999998764
No 391
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.50 E-value=0.025 Score=46.21 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 392
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.49 E-value=0.025 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.....|+|+|.+||||||+++.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999864
No 393
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.48 E-value=0.022 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
++-.|+|+|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999874
No 394
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.48 E-value=0.025 Score=52.77 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=24.9
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.++...++-.|+|+|++||||||++..+.+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 345556677899999999999999999875
No 395
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.47 E-value=0.023 Score=46.89 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-|+|.|.+||||||++++|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.43 E-value=0.023 Score=49.81 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...+.|+|.|++|+||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999863
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.42 E-value=0.0063 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999764
No 398
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.41 E-value=0.019 Score=61.88 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=33.0
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++++.+++..++-+++|+|++|+|||||++.+.+-
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 478899999999999999999999999999988754
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.40 E-value=0.024 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.39 E-value=0.023 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|.+||||||+++.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 401
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.38 E-value=0.024 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 402
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.34 E-value=0.016 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.+--++|+|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998764
No 403
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.32 E-value=0.026 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+..|+++|.+|+||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 404
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.30 E-value=0.023 Score=55.30 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=31.8
Q ss_pred cCCccccccccc-ccCCCceEEEEcCCCCCHHHHHHHH
Q 040295 33 FGRQEMDSTDRA-SLEKRPGILIIGSSNVGKRTILSRL 69 (289)
Q Consensus 33 ~g~~~~~~~~~~-~~~~~iKI~ilG~~gvGKSSLi~rl 69 (289)
.+...+++..+. ...++--++|+|++|||||||++.|
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 345667777887 8888889999999999999999995
No 405
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.29 E-value=0.023 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..++|+|++|+|||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998753
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.27 E-value=0.0081 Score=55.21 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=28.7
Q ss_pred cccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 38 ~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+++..+....++-.++|+|++|+|||||++.+.+--
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344455666667789999999999999999998654
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.27 E-value=0.027 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 408
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.24 E-value=0.029 Score=46.99 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.7
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..++--++|+|++|+|||||+..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44556799999999999999999987
No 409
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.23 E-value=0.024 Score=49.80 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
-|+|+|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 410
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.22 E-value=0.027 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.++.-|+|+|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999999875
No 411
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.22 E-value=0.027 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.241 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.+-|+|+|++|||||||++.+...
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999988643
No 412
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.20 E-value=0.026 Score=46.25 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 413
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.16 E-value=0.034 Score=47.16 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=46.2
Q ss_pred eEEEEEEEcCCc-hhhhccccccccCccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCC
Q 040295 97 TADVSLWMAHLH-EEFSIRSLPISDQLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLL 165 (289)
Q Consensus 97 ~~~l~I~Dt~G~-e~~~~~~~~~~~~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~ 165 (289)
.+++.|.|+|+. ... .....+..+|.+|++...+ ..++..+...+..++.....++.+|.|+.+..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 356889999876 322 1223466799999998865 66777777777777664334577899999874
No 414
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.15 E-value=0.026 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.13 E-value=0.029 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..|+|+|.+||||||+++.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 416
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.12 E-value=0.032 Score=60.13 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=33.6
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++++.+++..++-+++|+|++|+|||||++.+.+-.
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4788899999999999999999999999999997643
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.12 E-value=0.019 Score=53.83 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.6
Q ss_pred cccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 38 MDSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 38 ~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+++..+....++-.++|+|++|+|||||++.+.+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444456677777899999999999999999875
No 418
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.12 E-value=0.023 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
=.|+|+|++|+|||||++.+++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999998753
No 419
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.11 E-value=0.019 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 420
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.10 E-value=0.025 Score=61.10 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=32.8
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++++.+++..++-+++|+|++|+|||||++.+.+.
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 578889999999999999999999999999998754
No 421
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.03 E-value=0.026 Score=47.60 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998753
No 422
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.96 E-value=0.037 Score=47.68 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=22.5
Q ss_pred ccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 43 RASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 43 ~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
......+..|+|+|.+|+||||+.+.+..
T Consensus 10 ~~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 10 DDDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ----CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34566678899999999999999999874
No 423
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.96 E-value=0.02 Score=57.33 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=29.2
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHH
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRL 69 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl 69 (289)
.++++.+++..++-.++|+|++|||||||++.+
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 467788899999999999999999999999753
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.92 E-value=0.034 Score=46.99 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..+.-|+|+|.+|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999998864
No 425
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.90 E-value=0.025 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
....|+++|++||||||+.+.+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998653
No 426
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.80 E-value=0.031 Score=48.67 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=18.8
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+..+.-|+|.|++||||||+++++..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 427
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.80 E-value=0.033 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.6
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..++-.|+|+|++|+|||||++.+.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345557999999999999999998763
No 428
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.79 E-value=0.034 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHh
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
....||+++|.+|+|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446899999999999999999853
No 429
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.78 E-value=0.031 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.|++.|++|+|||+|++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999754
No 430
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.77 E-value=0.033 Score=47.40 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.9
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..++--++|+|++|+|||||+..+...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 344567999999999999999999874
No 431
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.74 E-value=0.036 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.9
Q ss_pred Cce-EEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPG-ILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iK-I~ilG~~gvGKSSLi~rl~~ 71 (289)
..| |+|+|+|||||+|.+.+|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345 56789999999999999874
No 432
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.74 E-value=0.033 Score=46.45 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 433
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.65 E-value=0.026 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.-++|+|+.|+|||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999653
No 434
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.65 E-value=0.038 Score=48.12 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+.|+|.|++||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 435
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.035 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.++|.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998753
No 436
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.55 E-value=0.036 Score=46.12 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--++|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 437
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.53 E-value=0.044 Score=54.54 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=28.5
Q ss_pred ccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 39 DSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 39 ~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
++..++...++-.++|+|+.|+|||||++.+.+..
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444556778889999999999999999998764
No 438
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.53 E-value=0.018 Score=56.16 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=25.5
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.+.....+-.++|+|++|||||||++.+++--
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34444556679999999999999999998654
No 439
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.49 E-value=0.033 Score=55.77 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=29.4
Q ss_pred CcccccccccccCCCceEEEEcCCCCCHHHHH
Q 040295 35 RQEMDSTDRASLEKRPGILIIGSSNVGKRTIL 66 (289)
Q Consensus 35 ~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi 66 (289)
...++++.+++..++-.++|+|++|||||||+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 45678899999999999999999999999996
No 440
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.25 E-value=0.042 Score=53.88 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.2
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.++...++-.++|+|++|||||||++.+.+-.
T Consensus 287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556778889999999999999999998754
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.17 E-value=0.047 Score=48.47 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|+|.+||||||+.+++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 442
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.06 E-value=0.044 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
++=-|+|+|+.|+|||||++.+++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3345899999999999999998864
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.04 E-value=0.053 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 444
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.02 E-value=0.047 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--+++.|++|+|||+|++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.01 E-value=0.049 Score=53.31 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=27.9
Q ss_pred cccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 40 STDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 40 ~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+..++...++-.++|+|+.|+|||||++.+.+..
T Consensus 303 ~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344455778889999999999999999998864
No 446
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.00 E-value=0.016 Score=54.01 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=28.8
Q ss_pred ccccccccccCCCceEEEEcCCCCCHHHHHHHHh
Q 040295 37 EMDSTDRASLEKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 37 ~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
..++..+..+.++ .++|+|+.|+|||||++.+.
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 4567788899999 99999999999999998763
No 447
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.99 E-value=0.052 Score=46.16 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..++--++|+|++|+|||||+.++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33445689999999999999888764
No 448
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.98 E-value=0.049 Score=46.93 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--|++.|++|+|||+|++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999753
No 449
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.81 E-value=0.051 Score=47.98 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=22.2
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
..++--++|+|++|+|||||+..+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34556799999999999999999885
No 450
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.80 E-value=0.068 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.-.++|.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999754
No 451
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.72 E-value=0.053 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--++|.|++|+|||||++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 452
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.68 E-value=0.051 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998754
No 453
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.66 E-value=0.06 Score=52.33 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.0
Q ss_pred cccccccccccCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 36 QEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 36 ~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
...+...+.....+ |+|+|++|+|||+|++.+.+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 34444444455544 999999999999999999764
No 454
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.58 E-value=0.067 Score=42.48 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.-|+|.|++|+|||++++.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999997654
No 455
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.53 E-value=0.058 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--++|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999998753
No 456
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.41 E-value=0.047 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=17.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+.|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 457
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.36 E-value=0.033 Score=55.18 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=34.6
Q ss_pred eecCCcccccccccccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 31 LIFGRQEMDSTDRASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 31 ~~~g~~~~~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
..||...+++........+-.++|+|++|+|||||++.+.+.-
T Consensus 42 ~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4567766766666666677789999999999999999998754
No 458
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.29 E-value=0.067 Score=47.86 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.-+++.|++|+|||+|++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34777799999999999998753
No 459
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.28 E-value=0.033 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 460
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.27 E-value=0.069 Score=47.07 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-.+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 461
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.27 E-value=0.091 Score=46.52 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhc
Q 040295 49 RPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...++|.|++|+|||+|++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999986543
No 462
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.16 E-value=0.08 Score=43.87 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.13 E-value=0.09 Score=45.18 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
+..|+|+|++|+|||+|+..|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999999999998654
No 464
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.13 E-value=0.071 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998764
No 465
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.13 E-value=0.091 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.--|++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999764
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.084 Score=52.52 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=28.1
Q ss_pred cccccccccCCC-----ceEEEEcCCCCCHHHHHHHHhcCCC
Q 040295 38 MDSTDRASLEKR-----PGILIIGSSNVGKRTILSRLLSVNF 74 (289)
Q Consensus 38 ~~~~~~~~~~~~-----iKI~ilG~~gvGKSSLi~rl~~~~~ 74 (289)
.++..++....+ -.++|+|++|+|||||++.+.+-..
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344455555554 4589999999999999999987653
No 467
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.06 E-value=0.061 Score=48.69 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.++|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999876
No 468
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.04 E-value=0.075 Score=46.52 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-.+++.|++|+|||+|++.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999764
No 469
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.96 E-value=0.25 Score=47.46 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHh---c---------------CCCCC---CCCCCcceEEe--eEEee-cCcceEEEEEE
Q 040295 48 KRPGILIIGSSNVGKRTILSRLL---S---------------VNFED---ASDSSSELLVN--GWTIN-TKYYTADVSLW 103 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~---~---------------~~~~~---~~~~t~~~~~~--~~~i~-~~~~~~~l~I~ 103 (289)
+..-|.|+|+.++|||+|+|.++ . ..|.. ....|.|+-.. +..+. ..+....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 34557799999999999999554 1 22321 12224443221 11121 25566789999
Q ss_pred EcCCch
Q 040295 104 MAHLHE 109 (289)
Q Consensus 104 Dt~G~e 109 (289)
||.|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999864
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.88 E-value=0.079 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-+++.|++|+|||++++.+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5999999999999999998764
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.74 E-value=0.12 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Q 040295 49 RPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..-|+|+|.+||||||+++++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345889999999999999999753
No 472
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.67 E-value=0.094 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-++|.|+.|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 473
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.65 E-value=0.11 Score=41.91 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 040295 52 ILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~ 70 (289)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999999875
No 474
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.57 E-value=0.1 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.-..|+|.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999754
No 475
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.56 E-value=0.075 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--++|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.54 E-value=0.066 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhc
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+...|+|.|..||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 477
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.52 E-value=0.089 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999754
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.49 E-value=0.097 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3589999999999999999875
No 479
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.44 E-value=0.12 Score=46.65 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC-----CCC------CCCCCCc-----------ceEEeeEE--------eecCcce
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV-----NFE------DASDSSS-----------ELLVNGWT--------INTKYYT 97 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~-----~~~------~~~~~t~-----------~~~~~~~~--------i~~~~~~ 97 (289)
.+-.|+|+|++||||||++..+... ... +.+..+. +....... +. .-..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFSE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-HhcC
Confidence 3457999999999999999987631 100 0011110 00000000 00 0123
Q ss_pred EEEEEEEcCCchhhhc-cc---ccccc--CccEEEEEEeCCCHhhHHHHHHHHHHhhhcCCCeEEEEeeCCCCCC
Q 040295 98 ADVSLWMAHLHEEFSI-RS---LPISD--QLTALVMVFNLNDLSTLDALKHWVPSIDLQKFEILLCIGNKVDLLP 166 (289)
Q Consensus 98 ~~l~I~Dt~G~e~~~~-~~---~~~~~--~ad~vIlV~Dv~~~~S~~~l~~~~~~i~~~~~~~iivvgnK~Dl~~ 166 (289)
+++.|.||+|...... .. ...+. ..+.+++|.|.+.. ...+..+...+... ...-+|.||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l--~~~giVltk~D~~~ 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV--PVNQYIFTKIDETT 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS--CCCEEEEECTTTCS
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC--CCCEEEEeCCCccc
Confidence 5689999998653321 11 01222 36788899987643 34444444444322 22334569999853
No 480
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.43 E-value=0.095 Score=48.34 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.1
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHHHhcCC
Q 040295 44 ASLEKRPGILIIGSSNVGKRTILSRLLSVN 73 (289)
Q Consensus 44 ~~~~~~iKI~ilG~~gvGKSSLi~rl~~~~ 73 (289)
.....+--+.|+|++|+|||||+..+...-
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445566679999999999999999998753
No 481
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.41 E-value=0.1 Score=48.34 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=22.6
Q ss_pred cccccCCCceEEEEcCCCCCHHHHHHHHh
Q 040295 42 DRASLEKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 42 ~~~~~~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
.+.....++ ++|+|+.|+|||||++.+.
T Consensus 17 ~~i~~~~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSEE-EEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCCe-EEEECCCCCCHHHHHHHHH
Confidence 345556675 6699999999999999976
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.40 E-value=0.094 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999764
No 483
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.39 E-value=0.075 Score=45.90 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.++|.||+|+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888764
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.38 E-value=0.093 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
--++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998754
No 485
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=91.35 E-value=0.1 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q 040295 49 RPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 49 ~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
.+||+++|.+++|||||++++.
T Consensus 9 ~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 9 IRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEECCCCCcHHHHHHHHH
Confidence 4799999999999999999865
No 486
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.35 E-value=0.11 Score=47.77 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 040295 51 GILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~ 71 (289)
.|+|+|++|||||||...+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 487
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.32 E-value=0.13 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 47 EKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 47 ~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
...--|+|+|++|+||||++..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3444689999999999999998874
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.32 E-value=0.12 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..|+|.|..||||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 489
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.28 E-value=0.12 Score=43.37 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhc
Q 040295 50 PGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
+.|+|.|++|+||||+.+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 490
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.25 E-value=0.1 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-.|++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999754
No 491
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.19 E-value=0.064 Score=42.55 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..|+|.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45999999999999999988644
No 492
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.11 E-value=0.16 Score=43.77 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 48 KRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 48 ~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
.+.-|+|.|.+|+||||+++.+...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998653
No 493
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.10 E-value=0.05 Score=47.38 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040295 52 ILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 52 I~ilG~~gvGKSSLi~rl~~~ 72 (289)
+++.|++|+|||+|++.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999998763
No 494
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.09 E-value=0.12 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-|+|+||+|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4889999999999999999754
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.05 E-value=0.11 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Q 040295 50 PGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 50 iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999654
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.02 E-value=0.11 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-++|.|++|+|||+|++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 497
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.02 E-value=0.11 Score=48.98 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.1
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHh
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLL 70 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~ 70 (289)
+.++--++|+|++|+|||||+..+.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3445569999999999999999875
No 498
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=90.95 E-value=0.11 Score=48.16 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=26.1
Q ss_pred ccccccccCCCceEEEEcCCCCCHHHHHHHHhc
Q 040295 39 DSTDRASLEKRPGILIIGSSNVGKRTILSRLLS 71 (289)
Q Consensus 39 ~~~~~~~~~~~iKI~ilG~~gvGKSSLi~rl~~ 71 (289)
.+..+....++ -++|+|+.|+|||||++.+..
T Consensus 17 ~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 17 LAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 34456677777 689999999999999999874
No 499
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.95 E-value=0.13 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 040295 51 GILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 51 KI~ilG~~gvGKSSLi~rl~~~ 72 (289)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.93 E-value=0.076 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.0
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHhcC
Q 040295 46 LEKRPGILIIGSSNVGKRTILSRLLSV 72 (289)
Q Consensus 46 ~~~~iKI~ilG~~gvGKSSLi~rl~~~ 72 (289)
..++..|+|+|++|||||||++.+.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 445677999999999999999998754
Done!