BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040297
(773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 209/712 (29%), Positives = 320/712 (44%), Gaps = 87/712 (12%)
Query: 19 TLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVS-QLLSSIASFTSLKYLSMQDSV- 76
+L+LS ++ G+V + +L L L ++ L L+S+ S + LK+L++ +
Sbjct: 81 SLFLSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Query: 77 -FKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAE 135
F G + G K +LE LD+ + +N + + + L L +I +
Sbjct: 139 DFPGKVSGG--LKLNSLEVLDLSANSISGANVVGWVLS---DGCGELKHLAISGNKISGD 193
Query: 136 TESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPXXXXXXX 195
+ S + +S + + G P FL L++ D+S LSG+F
Sbjct: 194 VDV---SRCVNLEFLDVSSNNFSTG--IP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 196 XXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
+P+ S Q L++ ++N F G IP + L L+LS N
Sbjct: 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSL---AENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 256 AFNGSIPSSFA-------------------------DMKMLERLDISYNQLTGEIPERMA 290
F G++P F M+ L+ LD+S+N+ +GE+PE +
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 291 TGCFLLEILALSNNNLQGHIFSK--KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348
L L LS+NN G I + L L L N FTG+I +LSNC L L+
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
LS N+LSG IP LG+LS L D+++ N LEG IP E + L L L N + G +PS
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLL 468
S + L + LS NR G IP WI L L+ L L
Sbjct: 485 GLS-----------------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS--LGEDYHEEGPPTSIWCD 526
NN G IP +L + + + +DL+ N +G IPA + S + ++ I D
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 527 --RASVYGSPCLPTQSGPPMGKEETVQFTTKN----MSYYYQGRILT------SMSGIDL 574
+ +G+ L G + E+ + +T+N S Y G SM +D+
Sbjct: 582 GMKKECHGAGNLLEFQG--IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 575 SCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ 634
S N L+G IP +IG + + LNL HN+++G+IP +L+ + LDLS N L G+IP
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 635 LTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCD 686
++ L L ++ NNLSG IP+ + QF TF + NP LCG+PL + CD
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CD 749
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 157/539 (29%), Positives = 229/539 (42%), Gaps = 68/539 (12%)
Query: 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSV 76
LK L +S +G V ++ NLE LD S + S + + ++L++L + +
Sbjct: 180 LKHLAISGNKISGDV---DVSRCVNLE--FLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234
Query: 77 FKGALHGQDF-RKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAE 135
G DF R L + L +S+N F PI PL +L L + + E
Sbjct: 235 LSG-----DFSRAISTCTELKL----LNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGE 284
Query: 136 TESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPXXXXXXX 195
+ LT + LSG G P F L++ LS N SG P
Sbjct: 285 IPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 196 XXXXXXXXXXXXXFGSFRMPIHSYQK-LAILDVSKNFFQGHI-PVEIGTYLPGLMDLNLS 253
G + + L LD+S N F G I P L +L L
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSK 313
N F G IP + ++ L L +S+N L+G IP + + L + L L N L+G I +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-LKLWLNMLEGEIPQE 461
Query: 314 KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
+ L L LD N+ TGEI LSNC L + LS+N L+G IP+W+G L L +++
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-------SPAFI----------- 415
SNN+ G IP E L LDL+ N GT+P+ + FI
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 416 ---EQVHLSKNKIEGQ-----------------LESII---HDSPY------LVTLDLSY 446
++ H + N +E Q + S + H SP ++ LD+SY
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 447 NRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
N G IP I +P L L LG+N I G IP ++ +L+ + ++DLS N L G IP +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 209/712 (29%), Positives = 320/712 (44%), Gaps = 87/712 (12%)
Query: 19 TLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVS-QLLSSIASFTSLKYLSMQDSV- 76
+L+LS ++ G+V + +L L L ++ L L+S+ S + LK+L++ +
Sbjct: 78 SLFLSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
Query: 77 -FKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAE 135
F G + G K +LE LD+ + +N + + + L L +I +
Sbjct: 136 DFPGKVSGG--LKLNSLEVLDLSANSISGANVVGWVLS---DGCGELKHLAISGNKISGD 190
Query: 136 TESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPXXXXXXX 195
+ S + +S + + G P FL L++ D+S LSG+F
Sbjct: 191 VDV---SRCVNLEFLDVSSNNFSTG--IP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 244
Query: 196 XXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
+P+ S Q L++ ++N F G IP + L L+LS N
Sbjct: 245 ELKLLNISSNQFVGPIPPLPLKSLQYLSL---AENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 256 AFNGSIPSSFA-------------------------DMKMLERLDISYNQLTGEIPERMA 290
F G++P F M+ L+ LD+S+N+ +GE+PE +
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 291 TGCFLLEILALSNNNLQGHIFSK--KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348
L L LS+NN G I + L L L N FTG+I +LSNC L L+
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
LS N+LSG IP LG+LS L D+++ N LEG IP E + L L L N + G +PS
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLL 468
S + L + LS NR G IP WI L L+ L L
Sbjct: 482 GLS-----------------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS--LGEDYHEEGPPTSIWCD 526
NN G IP +L + + + +DL+ N +G IPA + S + ++ I D
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 527 --RASVYGSPCLPTQSGPPMGKEETVQFTTKN----MSYYYQGRILT------SMSGIDL 574
+ +G+ L G + E+ + +T+N S Y G SM +D+
Sbjct: 579 GMKKECHGAGNLLEFQG--IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 575 SCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ 634
S N L+G IP +IG + + LNL HN+++G+IP +L+ + LDLS N L G+IP
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 635 LTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCD 686
++ L L ++ NNLSG IP+ + QF TF + NP LCG+PL + CD
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CD 746
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 157/539 (29%), Positives = 229/539 (42%), Gaps = 68/539 (12%)
Query: 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSV 76
LK L +S +G V ++ NLE LD S + S + + ++L++L + +
Sbjct: 177 LKHLAISGNKISGDV---DVSRCVNLE--FLDVSSNNFSTGIPFLGDCSALQHLDISGNK 231
Query: 77 FKGALHGQDF-RKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAE 135
G DF R L + L +S+N F PI PL +L L + + E
Sbjct: 232 LSG-----DFSRAISTCTELKL----LNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGE 281
Query: 136 TESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPXXXXXXX 195
+ LT + LSG G P F L++ LS N SG P
Sbjct: 282 IPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 196 XXXXXXXXXXXXXFGSFRMPIHSYQK-LAILDVSKNFFQGHI-PVEIGTYLPGLMDLNLS 253
G + + L LD+S N F G I P L +L L
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSK 313
N F G IP + ++ L L +S+N L+G IP + + L + L L N L+G I +
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-LKLWLNMLEGEIPQE 458
Query: 314 KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
+ L L LD N+ TGEI LSNC L + LS+N L+G IP+W+G L L +++
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-------SPAFI----------- 415
SNN+ G IP E L LDL+ N GT+P+ + FI
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 416 ---EQVHLSKNKIEGQ-----------------LESII---HDSPY------LVTLDLSY 446
++ H + N +E Q + S + H SP ++ LD+SY
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 447 NRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
N G IP I +P L L LG+N I G IP ++ +L+ + ++DLS N L G IP +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 42/269 (15%)
Query: 361 WLGNL--SALEDIRMSNNNLEG-------PIPIEFCQLDYLTILDLSN-NAIFGTLPSCF 410
WLG L + + R++N +L G PIP L YL L + N + G +P
Sbjct: 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97
Query: 411 SPAFIEQVH---LSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467
A + Q+H ++ + G + + LVTLD SYN G++P I+ LP L +
Sbjct: 98 --AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 468 LGNNYIEGEIPVQLCELKEV-RLIDLSHNNLSGYIPAC-----LVYTSLGEDYHEEGPPT 521
N I G IP ++ + +S N L+G IP L + L + E
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG---- 211
Query: 522 SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTS--MSGIDLSCNKL 579
D + ++GS K KN + G++ S ++G+DL N++
Sbjct: 212 ----DASVLFGS-----------DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 580 TGEIPTQIGYLTRIHALNLSHNNLTGTIP 608
G +P + L +H+LN+S NNL G IP
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 99/219 (45%), Gaps = 2/219 (0%)
Query: 285 IPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344
IP +A +L + NNL G I LT L L + N +G I D LS + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYL-TILDLSNNAIF 403
L S N LSG +P + +L L I N + G IP + L T + +S N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQL 463
G +P F+ + V LS+N +EG + + L+ N + + + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 464 SSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIP 502
+ L L NN I G +P L +LK + +++S NNL G IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
N G IP + A + L L I++ ++G IP+ ++ L L S N L G +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSI 145
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSN-CRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
+L NL+ + DGN +G I DS + +L + +S N L+G+IP NL+ L + +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433
S N LEG + F + L+ N++ L + + L N+I G L +
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 434 HDSPYLVTLDLSYNRFHGSIPNWINI 459
+L +L++S+N G IP N+
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNL 290
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%)
Query: 577 NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636
N L G IP I LT++H L ++H N++G IP S +K + +LD SYN L G +P ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 637 VLNTLAVFKVAYNNLSGKIPDRVAQFS 663
L L N +SG IPD FS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 87/236 (36%), Gaps = 47/236 (19%)
Query: 161 GTFPKFLYHQHDLKNADLSHLNLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQ 220
G P FL L D S+ LSG P I S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPS-------------------------ISSLP 149
Query: 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQ 280
L + N G IP G++ + +SRN G IP +FA++ L +D+S N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 281 LTGEIPERMATGCFLLEILALSNNNLQGHIFSK---KFNL------TNLMRLQLDGNNFT 331
L G+ +L S+ N Q +K F+L NL L L N
Sbjct: 209 LEGDA-----------SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Query: 332 GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387
G + L+ + L L +S N+L G IP+ GNL + +NN P+ C
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 583 IPTQIGYLTRIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IP+ + L ++ L + NNL G IP + L Q+ L +++ + G IP L+ + TL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 642 AVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGN 673
+YN LSG +P ++ +++GN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
LT + + ++ ++G IP + + + L+ S+N L+GT+P + S+L + + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 626 LLHGKIPSQLTVLNTL-AVFKVAYNNLSGKIPDRVAQ----FSTFEEDSYEGN 673
+ G IP + L ++ N L+GKIP A F + EG+
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 98/234 (41%), Gaps = 31/234 (13%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L LNLS N G +F + LE LD+++ L + P LL +L LS+
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFT-GEISDS-------------LSNCRLLA---- 345
L L +L L L GN+F G IS + LS+C LL+
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 346 ---------GLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILD 396
L LS N L+G L +L L + M++NN+ P L +I++
Sbjct: 494 AFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQSIIN 552
Query: 397 LSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450
LS+N + T C + FI + +K+E E+ + P L + LS + H
Sbjct: 553 LSHNPLDCT---CSNIHFITWYKENLHKLEDSEETTCANPPSLRGVKLSDVKLH 603
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 586 QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP-SQLTVLNTLAVF 644
Q+ L + LNLS+N G F Q+E LD+++ LH K P S L+ L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 645 KVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 678
+++ L +A + +GN F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 109/441 (24%), Positives = 168/441 (38%), Gaps = 75/441 (17%)
Query: 235 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294
HIP ++ + + LNL+ N P++F L LD +N ++ PE +
Sbjct: 18 HIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILP 73
Query: 295 LLEILALSNNNLQGHIFSKKFNL-TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
LL++L L +N L I + F TNL L L N+ S+ N + L L LS N
Sbjct: 74 LLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 354 LSG---------------------------RIPRWLGNLSALEDIRMSNNNLEGPIPIEF 386
LS +LGN S+L + +S+N L+ P F
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCF 191
Query: 387 CQLDYLTILDLSNNAIFGTLPS--CF--SPAFIEQVHLSKNKIEGQLESIIHDSPY--LV 440
+ L L L+N + L C+ S I+ + L+ N++ ES + L
Sbjct: 192 QTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLT 251
Query: 441 TLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500
LDLSYN H + LP L L L N I+ P L +R
Sbjct: 252 QLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLR------------ 299
Query: 501 IPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM--- 557
Y SL + ++ S+ P + S + E + N+
Sbjct: 300 ------YLSLKRAFTKQS---------VSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST 344
Query: 558 -SYYYQGRI---LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 613
S + G + S+S S LT E + + + + LNL+ N+++ TFS
Sbjct: 345 KSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSW 403
Query: 614 LKQIESLDLSYNLLHGKIPSQ 634
L Q+ LDL N + K+ Q
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQ 424
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632
D S KLT IP + + I LNL+HN L PT F+ Q+ LD +N + P
Sbjct: 10 DCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 633 SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFST 664
+L L V + +N LS +I D+ F T
Sbjct: 67 ELCQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 591 TRIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAY 648
T I L+L++N L T +TFS LK + LDLSYN LH + L +L + Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 649 NNLSGKIP 656
NN+ P
Sbjct: 282 NNIQRLSP 289
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 36/240 (15%)
Query: 285 IPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344
+P+ ++ LL+ L NN++ L +L L L N + + S R L
Sbjct: 48 VPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 345 AGLYLSDNHLS--------------------GRIPRWL-GNLSALEDIRMSNNNLEG--- 380
LY+S NHL ++P+ + L + I M N LE
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164
Query: 381 -PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG-QLESIIHDSPY 438
P + +L+YL I + I LP + ++HL NKI+ +LE ++ S
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPETLN-----ELHLDHNKIQAIELEDLLRYS-K 218
Query: 439 LVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
L L L +N+ ++ LP L L L NN + +P L +LK ++++ L NN++
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT 318
G P +F +K L L IS +LTG IP+ + L L L +N +Q +
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDLLRYS 217
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
L RL L N + SLS L L+L +N LS R+P L +L L+ + + NN+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276
Query: 379 EGPIPIEFCQLDY 391
+FC + +
Sbjct: 277 TKVGVNDFCPVGF 289
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 80/213 (37%), Gaps = 46/213 (21%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMAT------------ 291
L L L L N + P +FA + LERL +S NQL E+PE+M
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 133
Query: 292 -------------------GCFLLEILALSNNNLQG-----HIFSKKFNLT--------N 319
G L+ + N QG +I N+T +
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Query: 320 LMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379
L L LDGN T + SL LA L LS N +S L N L ++ ++NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 380 GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP 412
+P Y+ ++ L NN I + F P
Sbjct: 254 K-VPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 224 ILDVSKNFFQG---HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQ 280
I V K+ F G I VE+GT L + AF G MK L + I+
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTN--PLKSSGIENGAFQG--------MKKLSYIRIADTN 182
Query: 281 LTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSN 340
+T IP+ + L L L N + + L NL +L L N+ + + SL+N
Sbjct: 183 IT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238
Query: 341 CRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393
L L+L++N L ++P L + ++ + + NNN+ +FC Y T
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF-I 415
++P+ L +AL D++ NN + +F L L L L NN I P F+P +
Sbjct: 45 KVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 416 EQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN--ILPQLSSLLLGNNYI 473
E+++LSKN+++ E + L + + S+ N +N I+ +L + L ++ I
Sbjct: 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 474 EGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
E + +L +R+ D + + +P L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 194
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 631
+DL NK+T L +H L L +N ++ P F+ L ++E L LS N L ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 632 PSQLTVLNTLAVFKVAYNNLS 652
P ++ TL +V N ++
Sbjct: 116 PEKMP--KTLQELRVHENEIT 134
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 34/251 (13%)
Query: 271 LERLDISYNQLTGEIPERMATGCF--------LLEILALSN-NNLQG-HIFSKKF----- 315
L +++ S NQLT P + T + +I L+N NL G +F+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 316 --NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
NLTNL RL+L N + +IS +LS L L S N ++ P L NL+ LE + +
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQLES 431
S+N + I + +L L L +NN I P ++++ L+ N+++ G L S
Sbjct: 181 SSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGNQLKDIGTLAS 237
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ + L LDL+ N+ P ++ L +L+ L LG N I P L L + ++
Sbjct: 238 LTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 492 LSHNNLSGYIP 502
L+ N L P
Sbjct: 290 LNENQLEDISP 300
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 34/251 (13%)
Query: 271 LERLDISYNQLTGEIPERMATGCF--------LLEILALSN-NNLQG-HIFSKKF----- 315
L +++ S NQLT P + T + +I L+N NL G +F+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 316 --NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
NLTNL RL+L N + +IS +LS L L S N ++ P L NL+ LE + +
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQLES 431
S+N + I + +L L L +NN I P ++++ L+ N+++ G L S
Sbjct: 181 SSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGNQLKDIGTLAS 237
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ + L LDL+ N+ P ++ L +L+ L LG N I P L L + ++
Sbjct: 238 LTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 492 LSHNNLSGYIP 502
L+ N L P
Sbjct: 290 LNENQLEDISP 300
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 80/213 (37%), Gaps = 46/213 (21%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMAT------------ 291
L L L L N + P +FA + LERL +S NQL E+PE+M
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 133
Query: 292 -------------------GCFLLEILALSNNNLQG-----HIFSKKFNLT--------N 319
G L+ + N QG +I N+T +
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Query: 320 LMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379
L L LDGN T + SL LA L LS N +S L N L ++ ++NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 380 GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP 412
+P Y+ ++ L NN I + F P
Sbjct: 254 K-VPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 224 ILDVSKNFFQG---HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQ 280
I V K+ F G I VE+GT L + AF G MK L + I+
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTN--PLKSSGIENGAFQG--------MKKLSYIRIADTN 182
Query: 281 LTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSN 340
+T IP+ + L L L N + + L NL +L L N+ + + SL+N
Sbjct: 183 IT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238
Query: 341 CRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393
L L+L++N L ++P L + ++ + + NNN+ +FC Y T
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF-I 415
++P+ L +AL D++ NN + +F L L L L NN I P F+P +
Sbjct: 45 KVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 416 EQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN--ILPQLSSLLLGNNYI 473
E+++LSKN+++ E + L + + S+ N +N I+ +L + L ++ I
Sbjct: 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 474 EGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
E + +L +R+ D + + +P L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 194
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 34/251 (13%)
Query: 271 LERLDISYNQLTGEIPERMATGCF--------LLEILALSN-NNLQG-HIFSKKF----- 315
L +++ S NQLT P + T + +I L+N NL G +F+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 316 --NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
NLTNL RL+L N + +IS +LS L L S N ++ P L NL+ LE + +
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQLES 431
S+N + I + +L L L +NN I P ++++ L+ N+++ G L S
Sbjct: 181 SSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGNQLKDIGTLAS 237
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ + L LDL+ N+ P ++ L +L+ L LG N I P L L + ++
Sbjct: 238 LTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 492 LSHNNLSGYIP 502
L+ N L P
Sbjct: 290 LNENQLEDISP 300
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 3/184 (1%)
Query: 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNN-NLEG 380
R+ L GN + + S +CR L L+L N L+G L+ LE + +S+N L
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 381 PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYL 439
P F L +L L L + P F A ++ ++L N ++ ++ D L
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499
L L NR + L L LLL N++ P +L + + L NNLS
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS- 213
Query: 500 YIPA 503
+PA
Sbjct: 214 MLPA 217
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 8/192 (4%)
Query: 214 MPIHSYQK---LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSI-PSSFADMK 269
+P S+Q L IL + N G I T L L L+LS NA + P++F +
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 270 MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN 329
L L + L E+ + G L+ L L +NNLQ + +L NL L L GN
Sbjct: 105 HLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR 163
Query: 330 FTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQ 388
+ L L L NH++ P +L L + + NNL +P E
Sbjct: 164 IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVP 222
Query: 389 LDYLTILDLSNN 400
L L L L++N
Sbjct: 223 LRSLQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L L L NA +F D+ L L + N+++ +PER G L+ L L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 304 NNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
N + H+ F +L LM L L NN + +++L+ R L L L+DN
Sbjct: 187 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Query: 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNN-NLEG 380
R+ L GN + + S CR L L+L N L+ L+ LE + +S+N L
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 381 PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYL 439
P F L L L L + P F A ++ ++L N ++ + D L
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499
L L NR L L LLL N + P +L + + L NNLS
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L L L NA +F D+ L L + N+++ +PER G L+ L L
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 304 NNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
N + H+ F +L LM L L NN + +++L+ R L L L+DN
Sbjct: 186 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 2/180 (1%)
Query: 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNN-NLEG 380
R+ L GN + + S CR L L+L N L+ L+ LE + +S+N L
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 381 PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYL 439
P F L L L L + P F A ++ ++L N ++ + D L
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 154
Query: 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499
L L NR L L LLL N + P +L + + L NNLS
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 550 VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIP 608
V TKNMS S+ +D+S N L + + I LNLS N LTG++
Sbjct: 395 VALMTKNMS---------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV- 444
Query: 609 TTFSNL-KQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV-AQFSTFE 666
F L +++ LDL N + IP +T L L VA N L +PD V + ++ +
Sbjct: 445 --FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500
Query: 667 EDSYEGNPFLCGWP 680
NP+ C P
Sbjct: 501 YIWLHDNPWDCTCP 514
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 6/161 (3%)
Query: 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERLDISYNQLT 282
L+ ++N F + T L L L L RN + +M LE LD+S N L
Sbjct: 358 LNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 283 GEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCR 342
+R + +L LS+N L G +F ++ L NN I +++ +
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHLQ 473
Query: 343 LLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP 383
L L ++ N L L++L+ I + +N + P
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 566 LTSMSGIDLSCNKLTGE--IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
L ++ +DLS N + Q+ L+ + LNLSHN G F Q+E LDL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 624 YNLLHGKIP-SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 675
+ LH P S L+ L V + Y L +A + +GN F
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 16/260 (6%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
LNL + F+ ++F L+ LD++ L G +P M G LL+ L LS N+
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMK-GLNLLKKLVLSVNHFDQL 313
Query: 310 IFSKKFNLTNLMRLQLDGNNFTGEIS----DSLSNCRLLAGLYLSDNHLSGRIPRWLGNL 365
N +L L + GN + + L N + L L +D S L NL
Sbjct: 314 CQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTL-DLSHNDIEASDCCSLQLKNL 372
Query: 366 SALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP----AFIEQVHLS 421
S L+ + +S+N G F + L +LDL+ + P SP F++ ++L+
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ--SPFQNLHFLQVLNLT 430
Query: 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFH-GSI--PNWINILPQLSSLLLGNNYIEGEIP 478
++ + ++ P L L+L N F G+I N + + L L+L + +
Sbjct: 431 YCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQ 490
Query: 479 VQLCELKEVRLIDLSHNNLS 498
L ++ +DLSHN+L+
Sbjct: 491 QAFHSLGKMSHVDLSHNSLT 510
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 593 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+ +LNL + + TTF Q++ LDL+ L G +PS + LN L ++ N+
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD 311
Query: 653 GKIPDRVAQFSTFEEDSYEGN 673
A F + GN
Sbjct: 312 QLCQISAANFPSLTHLYIRGN 332
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 107/435 (24%), Positives = 159/435 (36%), Gaps = 74/435 (17%)
Query: 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT 318
G + F +M +LE LD+S N T +I + + +L L HI F
Sbjct: 195 GKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLI---LAHHIMGAGFGFH 250
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
N+ D N F G S+ + L G S N R L L+ + ++ N +
Sbjct: 251 NIK--DPDQNTFAGLARSSVRHLDLSHGFVFSLN------SRVFETLKDLKVLNLAYNKI 302
Query: 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSC--FSPAFIEQVHLSKNKIEGQLESIIHDS 436
F LD L +L+LS N + G L S + + + L KN I +II D
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHI-----AIIQDQ 356
Query: 437 PY-----LVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ L TLDL N I+ +P + + L N + + L LI
Sbjct: 357 TFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINL----TANLIH 407
Query: 492 LSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQ 551
LS N L ++Y L P I + + S C Q+ P
Sbjct: 408 LSENRLENLD---ILYFLL------RVPHLQILILNQNRFSS-CSGDQT-PSENPSLEQL 456
Query: 552 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTF 611
F +NM L +L + G L+ + L L+HN L P F
Sbjct: 457 FLGENM--------LQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGVF 500
Query: 612 SNLKQIESLDLSYNLL----HGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEE 667
S+L + L L+ N L H +P+ L +L+ ++ N L PD S +
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDLPANLEILD------ISRNQLLAPNPDVFVSLSVLD- 553
Query: 668 DSYEGNPFLCGWPLS 682
N F+C LS
Sbjct: 554 --ITHNKFICECELS 566
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 140/345 (40%), Gaps = 56/345 (16%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L LNL+ N N +F + L+ L++SYN L GE+ G + + L
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQK 347
Query: 304 NNL-----QGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358
N++ Q F +K +L L +F I D ++LS N L +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD----------IFLSGNKLVT-L 396
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEF-CQLDYLTILDLSNNAIFGTLPSCFSPA---F 414
P+ NL+A I +S N LE + F ++ +L IL L+ N F + +P+
Sbjct: 397 PKI--NLTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPS 452
Query: 415 IEQVHLSKNKIEGQLES-----IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG 469
+EQ+ L +N ++ E+ + +L L L++N + P + L L L L
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512
Query: 470 NNYI----EGEIPVQLCELKEVR---------------LIDLSHNNLSGYIPACLVYTSL 510
+N + ++P L L R ++D++HN +I C + T +
Sbjct: 513 SNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNK---FICECELSTFI 569
Query: 511 GEDYHE----EGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQ 551
H GPP I+C + L + S +EE ++
Sbjct: 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 46/246 (18%)
Query: 221 KLAILDVSKNFFQGHIPV---EIGTYLPGLMDLNLSRNA-----FNGSIPSSFA---DMK 269
K+A +D+ KN HI + + +L L L+L NA F SIP F +
Sbjct: 339 KVAYIDLQKN----HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394
Query: 270 MLERLDISYN--QLTGEIPERMATGCFLL-----EILALSNNNL----------QGHIFS 312
L +++++ N L+ E + FLL +IL L+ N +
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454
Query: 313 KKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIR 372
+ F N+++L + ++ + LS+ L LYL+ N+L+ P +L+AL +
Sbjct: 455 QLFLGENMLQLAWE-TELCWDVFEGLSH---LQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 373 MSNNNL----EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428
+++N L +P L ILD+S N + P F + + +K E +
Sbjct: 511 LNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564
Query: 429 LESIIH 434
L + I+
Sbjct: 565 LSTFIN 570
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 222 LAILDVSKN--FFQGHIP-VEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDI 276
L LD+S+N F+G + GT +DL +FNG I S+F ++ LE LD
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL-----SFNGVITMSSNFLGLEQLEHLDF 427
Query: 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHI-FSKKFN-LTNLMRLQLDGNNFTGE- 333
++ L ++ E + L ++ L ++ + F+ FN L++L L++ GN+F
Sbjct: 428 QHSNLK-QMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485
Query: 334 ISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393
+ D + R L L LS L P +LS+L+ + MS+NN + L+ L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 394 ILDLSNNAI 402
+LD S N I
Sbjct: 546 VLDYSLNHI 554
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L +++ +DLS +L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Query: 626 -LLHGK------IPSQLTVLN 639
++ K PS L LN
Sbjct: 553 HIMTSKKQELQHFPSSLAFLN 573
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + P
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 633 SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFST 664
L L V + +N LS ++ D+ F T
Sbjct: 72 ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 102
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 158/424 (37%), Gaps = 68/424 (16%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
LNL+ N ++F L LD+ +N ++ PE + +L++L L +N L
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 92
Query: 310 IFSKKFNL-TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368
+ K F TNL L L N+ ++ + L L LS N LS L L
Sbjct: 93 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 152
Query: 369 EDIRMSNNNLEGPIPIEFCQLDY-----LTILDLSNNAIFGTLPSCFSPA------FIEQ 417
+++ +SNN ++ ++ +LD L L+LS+N I P CF F+
Sbjct: 153 QELLLSNNKIQA---LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 209
Query: 418 VHLSKNKIE------------------GQLESIIHDS------PYLVTLDLSYNRFHGSI 453
V L + E QL + + + L LDLSYN +
Sbjct: 210 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 269
Query: 454 PNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513
+ LPQL L N I+ L L VR ++L + + SL +
Sbjct: 270 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR----SFTKQSISLASLPK- 324
Query: 514 YHEEGPPTSIWCDRASVYGSPCLP---TQSGPPMGKEETVQFTTKNMSYYYQGRILTSMS 570
D S CL + G + + N+ Y S+S
Sbjct: 325 -----------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL-------SLS 366
Query: 571 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630
S LT E + + + +H LNL+ N ++ FS L +E LDL N + +
Sbjct: 367 NSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 425
Query: 631 IPSQ 634
+ Q
Sbjct: 426 LTGQ 429
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 112/263 (42%), Gaps = 32/263 (12%)
Query: 264 SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN---- 319
SF +K LE L++ N + G I M TG L+ L+LSN+ F+ LTN
Sbjct: 329 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 381
Query: 320 ------LMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP--RWLGNLSALEDI 371
L L L N + SD+ S L L L N + + W G L + +I
Sbjct: 382 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEI 440
Query: 372 RMSNNNLEGPIPIEFCQLDYLTILDLSNNAI--FGTLPSCFSPAF-IEQVHLSKNKIEGQ 428
+S N F + L L L A+ + PS F P + + LS N I
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 429 LESIIHDSPYLVTLDLSYNRF-----HGSIPNWINILPQLSSLLLGNNYIEG--EIPVQL 481
+ ++ L LDL +N H + I L LS L + N G EIPV++
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 560
Query: 482 C-ELKEVRLIDLSHNNLSGYIPA 503
+L E+++IDL NNL+ +PA
Sbjct: 561 FKDLFELKIIDLGLNNLNT-LPA 582
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 8/229 (3%)
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT 331
E D S+ +LT ++P+ + T + +L L++N L+ + + L L + N +
Sbjct: 12 EVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 67
Query: 332 GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY 391
+ +L L L N LS + + L ++ + +N+++ F +
Sbjct: 68 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 127
Query: 392 LTILDLSNNAIFGT-LPSCFSPAFIEQVHLSKNKIEG--QLESIIHDSPYLVTLDLSYNR 448
L LDLS+N + T L + ++++ LS NKI+ E I + L L+LS N+
Sbjct: 128 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 187
Query: 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC-ELKEVRLIDLSHNN 496
P + + +L L L N + + +LC EL + +LS +N
Sbjct: 188 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 236
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + P
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
Query: 633 SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFST 664
L L V + +N LS ++ D+ F T
Sbjct: 77 ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 107
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 158/424 (37%), Gaps = 68/424 (16%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
LNL+ N ++F L LD+ +N ++ PE + +L++L L +N L
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 97
Query: 310 IFSKKFNL-TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368
+ K F TNL L L N+ ++ + L L LS N LS L L
Sbjct: 98 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 157
Query: 369 EDIRMSNNNLEGPIPIEFCQLDY-----LTILDLSNNAIFGTLPSCFSPA------FIEQ 417
+++ +SNN ++ ++ +LD L L+LS+N I P CF F+
Sbjct: 158 QELLLSNNKIQA---LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 214
Query: 418 VHLSKNKIE------------------GQLESIIHDS------PYLVTLDLSYNRFHGSI 453
V L + E QL + + + L LDLSYN +
Sbjct: 215 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 274
Query: 454 PNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513
+ LPQL L N I+ L L VR ++L + + SL +
Sbjct: 275 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR----SFTKQSISLASLPK- 329
Query: 514 YHEEGPPTSIWCDRASVYGSPCLP---TQSGPPMGKEETVQFTTKNMSYYYQGRILTSMS 570
D S CL + G + + N+ Y S+S
Sbjct: 330 -----------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL-------SLS 371
Query: 571 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630
S LT E + + + +H LNL+ N ++ FS L +E LDL N + +
Sbjct: 372 NSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 430
Query: 631 IPSQ 634
+ Q
Sbjct: 431 LTGQ 434
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 112/263 (42%), Gaps = 32/263 (12%)
Query: 264 SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN---- 319
SF +K LE L++ N + G I M TG L+ L+LSN+ F+ LTN
Sbjct: 334 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 386
Query: 320 ------LMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP--RWLGNLSALEDI 371
L L L N + SD+ S L L L N + + W G L + +I
Sbjct: 387 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEI 445
Query: 372 RMSNNNLEGPIPIEFCQLDYLTILDLSNNAI--FGTLPSCFSPAF-IEQVHLSKNKIEGQ 428
+S N F + L L L A+ + PS F P + + LS N I
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 429 LESIIHDSPYLVTLDLSYNRF-----HGSIPNWINILPQLSSLLLGNNYIEG--EIPVQL 481
+ ++ L LDL +N H + I L LS L + N G EIPV++
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 565
Query: 482 C-ELKEVRLIDLSHNNLSGYIPA 503
+L E+++IDL NNL+ +PA
Sbjct: 566 FKDLFELKIIDLGLNNLNT-LPA 587
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 8/229 (3%)
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT 331
E D S+ +LT ++P+ + T + +L L++N L+ + + L L + N +
Sbjct: 17 EVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 72
Query: 332 GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY 391
+ +L L L N LS + + L ++ + +N+++ F +
Sbjct: 73 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 132
Query: 392 LTILDLSNNAIFGT-LPSCFSPAFIEQVHLSKNKIEG--QLESIIHDSPYLVTLDLSYNR 448
L LDLS+N + T L + ++++ LS NKI+ E I + L L+LS N+
Sbjct: 133 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 192
Query: 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC-ELKEVRLIDLSHNN 496
P + + +L L L N + + +LC EL + +LS +N
Sbjct: 193 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 241
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + P
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 633 SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFST 664
L L V + +N LS ++ D+ F T
Sbjct: 67 ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 158/424 (37%), Gaps = 68/424 (16%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
LNL+ N ++F L LD+ +N ++ PE + +L++L L +N L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 87
Query: 310 IFSKKFNL-TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368
+ K F TNL L L N+ ++ + L L LS N LS L L
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 369 EDIRMSNNNLEGPIPIEFCQLDY-----LTILDLSNNAIFGTLPSCFSPA------FIEQ 417
+++ +SNN ++ ++ +LD L L+LS+N I P CF F+
Sbjct: 148 QELLLSNNKIQA---LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 418 VHLSKNKIE------------------GQLESIIHDS------PYLVTLDLSYNRFHGSI 453
V L + E QL + + + L LDLSYN +
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 454 PNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513
+ LPQL L N I+ L L VR ++L + + SL +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR----SFTKQSISLASLPK- 319
Query: 514 YHEEGPPTSIWCDRASVYGSPCLP---TQSGPPMGKEETVQFTTKNMSYYYQGRILTSMS 570
D S CL + G + + N+ Y S+S
Sbjct: 320 -----------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL-------SLS 361
Query: 571 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630
S LT E + + + +H LNL+ N ++ FS L +E LDL N + +
Sbjct: 362 NSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420
Query: 631 IPSQ 634
+ Q
Sbjct: 421 LTGQ 424
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 112/263 (42%), Gaps = 32/263 (12%)
Query: 264 SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN---- 319
SF +K LE L++ N + G I M TG L+ L+LSN+ F+ LTN
Sbjct: 324 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 376
Query: 320 ------LMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP--RWLGNLSALEDI 371
L L L N + SD+ S L L L N + + W G L + +I
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEI 435
Query: 372 RMSNNNLEGPIPIEFCQLDYLTILDLSNNAI--FGTLPSCFSPAF-IEQVHLSKNKIEGQ 428
+S N F + L L L A+ + PS F P + + LS N I
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 429 LESIIHDSPYLVTLDLSYNRF-----HGSIPNWINILPQLSSLLLGNNYIEG--EIPVQL 481
+ ++ L LDL +N H + I L LS L + N G EIPV++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555
Query: 482 C-ELKEVRLIDLSHNNLSGYIPA 503
+L E+++IDL NNL+ +PA
Sbjct: 556 FKDLFELKIIDLGLNNLNT-LPA 577
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 8/229 (3%)
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT 331
E D S+ +LT ++P+ + T + +L L++N L+ + + L L + N +
Sbjct: 7 EVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 332 GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY 391
+ +L L L N LS + + L ++ + +N+++ F +
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 392 LTILDLSNNAIFGT-LPSCFSPAFIEQVHLSKNKIEG--QLESIIHDSPYLVTLDLSYNR 448
L LDLS+N + T L + ++++ LS NKI+ E I + L L+LS N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC-ELKEVRLIDLSHNN 496
P + + +L L L N + + +LC EL + +LS +N
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 222 LAILDVSKN--FFQGHIP-VEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDI 276
L LD+S+N F+G + GT +DL +FNG I S+F ++ LE LD
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-----SFNGVITMSSNFLGLEQLEHLDF 403
Query: 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHI-FSKKFN-LTNLMRLQLDGNNFTGE- 333
++ L ++ E + L ++ L ++ + F+ FN L++L L++ GN+F
Sbjct: 404 QHSNLK-QMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 334 ISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393
+ D + R L L LS L P +LS+L+ + MS+NN + L+ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 394 ILDLSNNAI 402
+LD S N I
Sbjct: 522 VLDYSLNHI 530
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L +++ +DLS +L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 626 -LLHGK------IPSQLTVLN 639
++ K PS L LN
Sbjct: 529 HIMTSKKQELQHFPSSLAFLN 549
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 125/300 (41%), Gaps = 40/300 (13%)
Query: 344 LAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403
L L L+ HLS +P L LS L+ + +S N E I LT L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 404 GTLPS-CFSP-AFIEQVHLSKNKIEG------QLESIIHDSPYLVTLDLSYNRFHGSIPN 455
L + C + ++ LS + IE QL ++ H L +L+LSYN
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH----LQSLNLSYNEPLSLKTE 394
Query: 456 WINILPQLSSLLLGNNYI---EGEIPVQLCELKEV-----RLIDLSHNNLSGYIPACLVY 507
PQL L L + + + P Q L +V L+D+S L +PA L +
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA-LQH 453
Query: 508 TSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI-- 565
+L ++ +G T S +G+ E + + ++S Q
Sbjct: 454 LNLQGNHFPKGNIQK---------------TNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L M+ +DLS N+LT + +L I+ LNL+ N+++ +P+ L Q +++L N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L LNLS N +F + LE LD+++ +L + + LL++L LS+
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 304 NNLQGHIFSKKF--NLTNLMRLQLDGNNF-TGEI--SDSLSNCRLLAGLYLSDNHLSGRI 358
+ L I S++ L L L L GN+F G I ++SL L L LS LS
Sbjct: 435 SLLD--ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQ- 417
+L + + +S+N L L + L+L++N I LPS P +Q
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL-PILSQQR 550
Query: 418 -VHLSKNKIEGQLESI 432
++L +N ++ +I
Sbjct: 551 TINLRQNPLDCTCSNI 566
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 590 LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649
LT + LNLS N L F NL ++E LDLSYN + L L + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 650 NLSGKIPDRV-AQFSTFEEDSYEGNPFLCGWP 680
L +PD + + ++ ++ NP+ C P
Sbjct: 382 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 244 LPGLMDLNLSRNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALS 302
L L+ LNLS+N F GSI S F ++ LE LD+SYN + + ++ G L+ LAL
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 303 NNNLQG---HIFSKKFNLTNLMRLQLDGN 328
N L+ IF + LT+L ++ L N
Sbjct: 380 TNQLKSVPDGIFDR---LTSLQKIWLHTN 405
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 396 DLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP 454
DLS + IF L S FS +EQ+ L++N+I ++ +L+ L+LS N F GSI
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSID 339
Query: 455 NWI-NILPQLSSLLLGNNYIEG 475
+ + L +L L L N+I
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA 361
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
LT++ + L N+L LT + LNL+HN L F L + LDLSYN
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV-AQFSTFEEDSYEGNPFLCGWP 680
L L L ++ N L +PD V + ++ + NP+ C P
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 23/175 (13%)
Query: 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERL-DISYNQLTGEIPERMATGCFL----LE 297
YLP + L L N + D+ L+ L +++Y LTG + + G F L+
Sbjct: 61 YLPNVRYLALGGNKLH--------DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 298 ILALSNNNLQG---HIFSKKFNLT--NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
L L N LQ +F K NLT NL QL + + D L+N L L LS N
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL--QSLPKGVFDKLTN---LTELDLSYN 167
Query: 353 HLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP 407
L L+ L+D+R+ N L+ F +L L + L +N T P
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTG------EIPERMATGCFLLEI 298
PGL++++LS N + F M+ LERL IS N+L IP L++
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT--------LKV 299
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
L LS+N+L H+ + L L LD N+ ++ LS L L LS N
Sbjct: 300 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 349
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 39/196 (19%)
Query: 339 SNCRLLAGLYLSDNHLSGRIPRWL-GNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397
N LL L L N LS +PR + N L + MSNNNLE F L L L
Sbjct: 114 QNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 398 SNNAI----FGTLPSCFS-------------PAFIEQVHLSKNKI---------EGQLES 431
S+N + +PS F P +E++ S N I E +
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232
Query: 432 IIHDS----------PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
+ H++ P LV +DLSYN + + + +L L + NN + + +
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG 291
Query: 482 CELKEVRLIDLSHNNL 497
+ ++++DLSHN+L
Sbjct: 292 QPIPTLKVLDLSHNHL 307
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 587 IGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 263 SSFADMKMLERLDISYNQLTGEIPERMATGCF----LLEILALSNNNLQGHIFSKKFNLT 318
++F + L L++ YNQL + ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
L +L L GN S L L L+ N L L+ L+ + +S N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPY 438
+ F +L L + L N C + + + + NK++ +H+SP
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQF--DCSRCETLYLSQWIRENSNKVKDGTGQNLHESPD 225
Query: 439 LVT 441
VT
Sbjct: 226 GVT 228
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTG------EIPERMATGCFLLEI 298
PGL++++LS N + F M+ LERL IS N+L IP L++
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 305
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
L LS+N+L H+ + L L LD N+ ++ LS L L LS N
Sbjct: 306 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 355
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 80/202 (39%), Gaps = 51/202 (25%)
Query: 339 SNCRLLAGLYLSDNHLSGRIPRWL-GNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397
N LL L L N LS +PR + N L + MSNNNLE F L L L
Sbjct: 120 QNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 398 SNNAI----FGTLPSCFS-------------PAFIEQVHLSKNKI---------EGQLES 431
S+N + +PS F P +E++ S N I E +
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 238
Query: 432 IIHDS----------PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEG------ 475
+ H++ P LV +DLSYN + + + +L L + NN +
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298
Query: 476 EIPVQLCELKEVRLIDLSHNNL 497
IP ++++DLSHN+L
Sbjct: 299 PIPT-------LKVLDLSHNHL 313
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 35/251 (13%)
Query: 271 LERLDISYNQLTGEIPERMATGCF--------LLEILALSN-NNLQG-HIFSKKF----- 315
L +++ S NQLT P + T + +I L+N NL G +F+ +
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 129
Query: 316 --NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
NLTNL RL+L N + +IS +LS L L N ++ P L NL+ LE + +
Sbjct: 130 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 184
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQLES 431
S+N + I + +L L L +NN I P ++++ L+ N+++ G L S
Sbjct: 185 SSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGTLAS 241
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ + L LDL+ N+ P ++ L +L+ L LG N I P L L + ++
Sbjct: 242 LTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 492 LSHNNLSGYIP 502
L+ N L P
Sbjct: 294 LNENQLEDISP 304
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 35/251 (13%)
Query: 271 LERLDISYNQLTGEIPERMATGCF--------LLEILALSN-NNLQG-HIFSKKF----- 315
L +++ S NQLT P + T + +I L+N NL G +F+ +
Sbjct: 69 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 128
Query: 316 --NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
NLTNL RL+L N + +IS +LS L L N ++ P L NL+ LE + +
Sbjct: 129 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 183
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQLES 431
S+N + I + +L L L +NN I P ++++ L+ N+++ G L S
Sbjct: 184 SSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGTLAS 240
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ + L LDL+ N+ P ++ L +L+ L LG N I P L L + ++
Sbjct: 241 LTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 492 LSHNNLSGYIP 502
L+ N L P
Sbjct: 293 LNENQLEDISP 303
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 35/251 (13%)
Query: 271 LERLDISYNQLTGEIPERMATGCF--------LLEILALSN-NNLQG-HIFSKKF----- 315
L +++ S NQLT P + T + +I L+N NL G +F+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 316 --NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
NLTNL RL+L N + +IS +LS L L N ++ P L NL+ LE + +
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDI 179
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQLES 431
S+N + I + +L L L +NN I P ++++ L+ N+++ G L S
Sbjct: 180 SSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGTLAS 236
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ + L LDL+ N+ P ++ L +L+ L LG N I P L L + ++
Sbjct: 237 LTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 492 LSHNNLSGYIP 502
L+ N L P
Sbjct: 289 LNENQLEDISP 299
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 214 MPIHSYQKLAILD---VSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 270
+P +++L L+ V+ N Q +P+ + L L +L L RN P F +
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L L + YN+L +P+ + L+ L L NN L+ LT L L+LD N
Sbjct: 135 LTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 331 TGEISDSLSNCRLLAGLYLSDN 352
+ + L L L +N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTG---EISDSLSNCRLLAGLYLSDN 352
LE L +++N LQ L NL L+LD N + DSL+ L L L N
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK---LTYLSLGYN 143
Query: 353 HLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-S 411
L L++L+++R+ NN L+ F +L L L L NN + F S
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 412 PAFIEQVHLSKNKIEGQLESIIHDSPYL 439
++ + L +N + II+ + +L
Sbjct: 204 LEKLKMLQLQENPWDCTCNGIIYMAKWL 231
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 3/176 (1%)
Query: 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG- 380
+L L N + S + L LYL+DN L L LE + +++N L+
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 381 PIPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHLSKNKIEGQLESIIHDSPYL 439
PI + F QL L L L N + P F S + + L N+++ + + L
Sbjct: 101 PIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L N+ + L +L +L L NN ++ L++++++ L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 35/251 (13%)
Query: 271 LERLDISYNQLTGEIPERMATGCF--------LLEILALSN-NNLQG-HIFSKKF----- 315
L +++ S NQLT P + T + +I L+N NL G +F+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 316 --NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
NLTNL RL+L N + +IS +LS L L N ++ P L NL+ LE + +
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDI 179
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQLES 431
S+N + I + +L L L +NN I P ++++ L+ N+++ G L S
Sbjct: 180 SSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGNQLKDIGTLAS 236
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ + L LDL+ N+ P ++ L +L+ L LG N I P L L + ++
Sbjct: 237 LTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 492 LSHNNLSGYIP 502
L+ N L P
Sbjct: 289 LNENQLEDISP 299
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%)
Query: 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLA 642
+P ++ + ++LS+N ++ +FSN+ Q+ +L LSYN L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 643 VFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
+ + N++S S + NP C
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 288 RMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347
R T C L+ + +N +G K ++ L LDGN FT + LSN + L +
Sbjct: 3 RCPTECTCLDTVVRCSN--KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLI 59
Query: 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
LS+N +S + N++ L + +S N L P F L L +L L N I
Sbjct: 60 DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 226 DVSKNFFQGH----IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQL 281
DV++ + G+ +P E+ Y L ++LS N + SF++M L L +SYN+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 282 TGEIPERMATGCFLLEILALSNNNL 306
IP R G L +L+L N++
Sbjct: 91 RC-IPPRTFDGLKSLRLLSLHGNDI 114
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 15/156 (9%)
Query: 256 AFNGSI--PSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI-----LALSNNNLQG 308
+FNG I S+F ++ LE LD ++ L ++M+ L + L +S+ + +
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 309 HIFSKKFN-LTNLMRLQLDGNNFTGE-ISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLS 366
F+ FN L++L L++ GN+F + D + R L L LS L P +LS
Sbjct: 141 -AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 367 ALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
+L+ + MS+NN + L+ L +LD S N I
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L +++ +DLS +L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 626 -LLHGK------IPSQLTVLN 639
++ K PS L LN
Sbjct: 234 HIMTSKKQELQHFPSSLAFLN 254
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 23/189 (12%)
Query: 263 SSFADMKMLERLDISYNQLTGEIPERMATGCF----LLEILALSNNNLQGHIFSKKFNLT 318
++F + L L++ YNQL + ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
L +L L GN S L L L+ N L L+ L+ + +S N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK------NKIEGQLESI 432
+ F +L L + L N F + E ++LS+ NK++
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQ--------FDCSRCEILYLSQWIRENSNKVKDGTGQN 219
Query: 433 IHDSPYLVT 441
+H+SP VT
Sbjct: 220 LHESPDGVT 228
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627
++ +DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 628 HG------KIPSQLTVLNTLA 642
K S LT LN L
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLG 133
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 4/166 (2%)
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCF 294
IP YL L +L L N SIPS +F + L RLD+ + I E G F
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L+ L L N++ L L L++ GN+F S L L++ ++ +
Sbjct: 197 NLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400
S L++L ++ +++NNL F L YL L L +N
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 35/95 (36%)
Query: 588 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647
G L + L L N LTG P F I+ L L N + L+ L +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682
N +S +P ++ + NPF C L+
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 437 PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNN 496
P+LV L+L N+ G PN + L LG N I+ L +++ ++L N
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 497 LSGYIPA 503
+S +P
Sbjct: 114 ISCVMPG 120
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627
++ +DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 628 HG------KIPSQLTVLNTLA 642
K S LT LN L
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLG 107
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCF 294
+P + YL L +L L N SIPS +F + L RLD+ + I E G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMR---LQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L L L NL+ NLT L+R L+L GN S L L+L
Sbjct: 157 NLRYLNLGMCNLKD-----IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNL 378
++ +L +LE++ +S+NNL
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 581 GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP----SQLT 636
E+P I TR LNL N++ TF +L+ +E L LS NL+ KI + L
Sbjct: 27 AEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLP 83
Query: 637 VLNTLAVFKVAYNNLSGKIPDRVAQF-STFEEDSYEGNPF 675
LNTL +F +N +P + ++ S E NP
Sbjct: 84 SLNTLELF----DNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L + ++LS N+L P LT + L L H + F +LK +E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCF 294
+P + YL L +L L N SIPS +F + L RLD+ + I E G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMR---LQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L L L NL+ NLT L+R L+L GN S L L+L
Sbjct: 157 NLRYLNLGMCNLK-----DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNL 378
++ +L +LE++ +S+NNL
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 581 GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP----SQLT 636
E+P I TR LNL N++ TF +L+ +E L LS NL+ KI + L
Sbjct: 27 AEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLP 83
Query: 637 VLNTLAVFKVAYNNLSGKIPDRVAQF-STFEEDSYEGNPF 675
LNTL +F +N +P + ++ S E NP
Sbjct: 84 SLNTLELF----DNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 624
LTS+ + KL IG L + LN++HN + + +P FSNL + +DLSY
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 625 NLLH 628
N +
Sbjct: 163 NYIQ 166
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 244 LPGLMDLNLSRNA-----------------------FNGSI--PSSFADMKMLERLDISY 278
LP L L+LSRNA FNG+I ++F ++ L+ LD +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 279 NQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT-GEISDS 337
+ L L L +S N + LT+L L++ GN+F +S+
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 338 LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397
+N L L LS L L L+ + MS+NNL + QL L+ LD
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 398 SNNAI 402
S N I
Sbjct: 529 SFNRI 533
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 592 RIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNN 650
+I + + +NNL T + T+ K++ L+ YN L GK+P+ + + LA +AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASLNLAYNQ 364
Query: 651 LSGKIPDRVAQFSTFEE 667
++ +IP A F F E
Sbjct: 365 IT-EIP---ANFCGFTE 377
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 574 LSC--NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL-KQIESLDLSYNLLH 628
L C N+L G++P G ++ +LNL++N +T IP F +Q+E+L ++N L
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 624
LTS+ + KL IG L + LN++HN + + +P FSNL + +DLSY
Sbjct: 98 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Query: 625 NLLH 628
N +
Sbjct: 158 NYIQ 161
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 244 LPGLMDLNLSRNA-----------------------FNGSI--PSSFADMKMLERLDISY 278
LP L L+LSRNA FNG+I ++F ++ L+ LD +
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 403
Query: 279 NQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT-GEISDS 337
+ L L L +S N + LT+L L++ GN+F +S+
Sbjct: 404 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 463
Query: 338 LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397
+N L L LS L L L+ + MS+NNL + QL L+ LD
Sbjct: 464 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 523
Query: 398 SNNAI 402
S N I
Sbjct: 524 SFNRI 528
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 210 GSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADM 268
GS P I+D +G EI T LP + ++ L +N P +F+
Sbjct: 1 GSLHCPAACTCSNNIVDC-----RGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPY 55
Query: 269 KMLERLDISYNQLTGEIPE 287
K L R+D+S NQ++ P+
Sbjct: 56 KKLRRIDLSNNQISELAPD 74
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 41/211 (19%)
Query: 261 IPSSFAD-MKMLERLDISYNQLTGE-IPERMATGCF-LLEILALSNNNLQGHIFSKKFNL 317
+P SF+ +K LE LD+S N + E + G + L+ L LS N+L+
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-------- 376
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN--HLSGRIPRWLGNLSALEDIRMSN 375
TGEI +L N L L +S N H +W E +R N
Sbjct: 377 -----------QKTGEILLTLKN---LTSLDISRNTFHPMPDSCQWP------EKMRFLN 416
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
+ G ++ C L +LD+SNN + S F P ++++++S+NK++ ++ +
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPR-LQELYISRNKLKTLPDASLF- 472
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSL 466
P L+ + +S N+ S+P+ I +L+SL
Sbjct: 473 -PVLLVMKISRNQLK-SVPD--GIFDRLTSL 499
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 382 IPIEFCQ-LDYLTILDLS----------NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430
+P F Q L L LDLS N+A G PS + Q HL + G++
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQNHLRSMQKTGEIL 383
Query: 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLI 490
+ + L +LD+S N FH +P+ ++ L L + I V+ C + + ++
Sbjct: 384 LTLKN---LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVL 436
Query: 491 DLSHNNLSGY 500
D+S+NNL +
Sbjct: 437 DVSNNNLDSF 446
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 210 GSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADM 268
GS P I+D +G EI T LP + ++ L +N P +F+
Sbjct: 1 GSLHCPAACTCSNNIVDC-----RGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPY 55
Query: 269 KMLERLDISYNQLTGEIPE 287
K L R+D+S NQ++ P+
Sbjct: 56 KKLRRIDLSNNQISELAPD 74
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGT 405
LYL DN ++ P +L L+++ + +N L G +P+ F L LT+LDL N +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TV 102
Query: 406 LPSCFSPAFIEQVHLSK-----NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINIL 460
LP S F VHL + NK+ +L I +L L L N+ SIP+
Sbjct: 103 LP---SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH--GAF 155
Query: 461 PQLSSL----LLGNNY 472
+LSSL L GN +
Sbjct: 156 DRLSSLTHAYLFGNPW 171
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQL 281
L +LDVS N +P+ L L +L L N P LE+L ++ NQL
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 282 TGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ-LDGNNFTGEISDSLSN 340
T E+P + G L+ L L N+L + K F ++L+ L GN + L N
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPW-------LCN 210
Query: 341 CRLL 344
C +L
Sbjct: 211 CEIL 214
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQL 281
L +LDVS N +P+ L L +L L N P LE+L ++ NQL
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 282 TGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ-LDGNNFTGEISDSLSN 340
T E+P + G L+ L L N+L + K F ++L+ L GN + L N
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPW-------LCN 210
Query: 341 CRLL 344
C +L
Sbjct: 211 CEIL 214
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 217 HSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 276
+ L +LDVS N +P+ L L +L L N P LE+L +
Sbjct: 97 QTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ-LDGNNFTGEIS 335
+ NQLT E+P + G L+ L L N+L + K F ++L+ L GN +
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPW----- 207
Query: 336 DSLSNCRLL 344
L NC +L
Sbjct: 208 --LCNCEIL 214
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 41/211 (19%)
Query: 261 IPSSFAD-MKMLERLDISYNQLTGE-IPERMATGCF-LLEILALSNNNLQGHIFSKKFNL 317
+P SF+ +K LE LD+S N + E + G + L+ L LS N+L+
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-------- 402
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN--HLSGRIPRWLGNLSALEDIRMSN 375
TGEI +L N L L +S N H +W E +R N
Sbjct: 403 -----------QKTGEILLTLKN---LTSLDISRNTFHPMPDSCQWP------EKMRFLN 442
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
+ G ++ C L +LD+SNN + S F P ++++++S+NK++ ++ +
Sbjct: 443 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPR-LQELYISRNKLKTLPDASLF- 498
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSL 466
P L+ + ++ N+ S+P+ I +L+SL
Sbjct: 499 -PVLLVMKIASNQLK-SVPD--GIFDRLTSL 525
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 382 IPIEFCQ-LDYLTILDLS----------NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430
+P F Q L L LDLS N+A G PS + Q HL + G++
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQNHLRSMQKTGEIL 409
Query: 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLI 490
+ + L +LD+S N FH +P+ ++ L L + I V+ C + + ++
Sbjct: 410 LTLKN---LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVL 462
Query: 491 DLSHNNLSGY 500
D+S+NNL +
Sbjct: 463 DVSNNNLDSF 472
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 460 LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIP-ACL 505
LPQL SL LGNN I +I V L L ++ + L N +S +P ACL
Sbjct: 128 LPQLESLYLGNNKI-TDITV-LSRLTKLDTLSLEDNQISDIVPLACL 172
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 217 HSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 276
+ L +LDVS N +P+ L L +L L N P LE+L +
Sbjct: 97 QTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ-LDGNNFTGEIS 335
+ NQLT E+P + G L+ L L N+L + K F ++L+ L GN +
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPW----- 207
Query: 336 DSLSNCRLL 344
L NC +L
Sbjct: 208 --LCNCEIL 214
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 260 SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLT 318
++P S L LD+S+N L+ E T L L LS+N+L I S+ F +
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVP 88
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
NL L L N+ S+ + L L L +NH+ +++ L+ + +S N +
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 379 EGPIPIEFC----QLDYLTILDLSNNAI 402
P+E +L L +LDLS+N +
Sbjct: 149 -SRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 572 IDLSCN---KLTGE-IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627
+DLS N +L E PT+ LT +H+L LSHN+L F + + LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTR---LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 628 HGKIPSQLTVLNTLAVFKVAYNN 650
H + L L V + YNN
Sbjct: 101 HTLDEFLFSDLQALEVL-LLYNN 122
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
K + +I L S+KTL L+ T T L +NL+ L LD L+ +S +A T
Sbjct: 98 KNVSAIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLD---LNQITNISPLAGLT 151
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHL 95
+L+YLS+ G D NL L
Sbjct: 152 NLQYLSI------GNAQVSDLTPLANLSKL 175
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 594 HALNLSHNNLTGTI-PTTFSNL--KQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNN 650
H+L+LSHN+L T+ P+ + + SL+LS+ L ++P L L V ++ N
Sbjct: 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPA--KLRVLDLSSNR 283
Query: 651 LS-GKIPDRVAQFSTFEEDSYEGNPFL 676
L+ PD + + + +GNPFL
Sbjct: 284 LNRAPQPDELPEVDNL---TLDGNPFL 307
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L+R +++ Q+ G +P +L L LS+N LQ + L L L + N
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL-EGPIPIEFCQL 389
T +L L LYL N L P L LE + ++NNNL E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-LNGL 171
Query: 390 DYLTILDLSNNAIFGTLPSCF 410
+ L L L N+++ T+P F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGF 191
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
LTS++ + L NKL LT + LNLS N L F L Q++ L L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV-AQFSTFEEDSYEGNPFLCGWP 680
L L L ++ N L +PD V + ++ + NP+ C P
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L+R +++ Q+ G +P +L L LS+N LQ + L L L + N
Sbjct: 63 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 113
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLD 390
T +L L LYL N L P L LE + ++NNNL L+
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 173
Query: 391 YLTILDLSNNAIFGTLPSCF 410
L L L N+++ T+P F
Sbjct: 174 NLDTLLLQENSLY-TIPKGF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L+R +++ Q+ G +P +L L LS+N LQ + L L L + N
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL-EGPIPIEFCQL 389
T +L L LYL N L P L LE + ++NNNL E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-LNGL 171
Query: 390 DYLTILDLSNNAIFGTLPSCF 410
+ L L L N+++ T+P F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGF 191
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 299 LALSNNN---LQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
L L+NN L+ +F +L NL +L + N T + L L L+DNHL
Sbjct: 38 LWLNNNQITKLEPGVFD---HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 356 GRIPRW-LGNLSALEDIRMSNN 376
IPR NL +L I + NN
Sbjct: 95 S-IPRGAFDNLKSLTHIYLYNN 115
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L+R +++ Q+ G +P +L L LS+N LQ + L L L + N
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL-EGPIPIEFCQL 389
T +L L LYL N L P L LE + ++NNNL E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-LNGL 171
Query: 390 DYLTILDLSNNAIFGTLPSCF 410
+ L L L N+++ T+P F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGF 191
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 24/224 (10%)
Query: 210 GSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADM 268
GS P + +D S N IP I Y +L L+ N F F +
Sbjct: 1 GSLACPEKCRCEGTTVDCS-NQKLNKIPEHIPQYT---AELRLNNNEFTVLEATGIFKKL 56
Query: 269 KMLERLDISYNQLTGEIPERMATGCFLL-EILALSNN--NLQGHIFSKKFNLTNLMRLQL 325
L +++ S N++T +I E G + EIL SN N+Q +F L +L L L
Sbjct: 57 PQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFK---GLESLKTLML 112
Query: 326 DGNNFTGEISDS---LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI 382
N T +DS LS+ RLL+ L DN ++ P L +L + + L P
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLS---LYDNQITTVAPGAFDTLHSLSTLNL----LANPF 165
Query: 383 PIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE 426
C L +L + G P C P F++++ + I+
Sbjct: 166 NCN-CYLAWLGEWLRKKRIVTGN-PRCQKPYFLKEIPIQDVAIQ 207
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L+R +++ Q+ G +P +L L LS+N LQ + L L L + N
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLD 390
T +L L LYL N L P L LE + ++NNNL L+
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 391 YLTILDLSNNAIFGTLPSCF 410
L L L N+++ T+P F
Sbjct: 173 NLDTLLLQENSLY-TIPKGF 191
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM-KMLERLDISY 278
Q L LDVS+N F G + P L LN S N S D+ LE L++S
Sbjct: 277 QSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEI-----RSLCDLPPSLEELNVSN 326
Query: 279 NQLT--GEIPERM----ATGCFLLEILALSNNNLQGHI 310
N+L +P R+ A+ L E+ L N Q H+
Sbjct: 327 NKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHV 364
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTG---EISDSLSNCRLLAGLYLSDNHLS 355
LAL N L H S LTNL L L GN + D L+N L L L +N L
Sbjct: 68 LALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN---LKELVLVENQLQ 122
Query: 356 GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFI 415
L+ L + + +N L+ F +L LT LDL NN + +LP
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLT 181
Query: 416 EQVHLSKNKIEGQLESI 432
+ LS N + QL+S+
Sbjct: 182 QLKQLSLN--DNQLKSV 196
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 260 SIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG---HIFSKKF 315
S+P+ F + L+ L + NQL +P+ + L L L +N LQ +F K
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDK-- 155
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
LTNL RL LD N L L L+DN L L++L I + N
Sbjct: 156 -LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
Query: 376 N 376
N
Sbjct: 215 N 215
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCF 294
IP YL L +L L N SIPS +F + L RLD+ + I E G
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMR---LQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L L L+ NL+ + NLT L++ L L GN+ + S L L++
Sbjct: 186 NLRYLNLAMCNLR-----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNL 378
+ + NL +L +I +++NNL
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
K + +I L S+KTL L+ T T L +NL+ L LD L+ +S +A T
Sbjct: 104 KNVSAIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLD---LNQITNISPLAGLT 157
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHL 95
+L+YLS+ G D NL L
Sbjct: 158 NLQYLSI------GNNQVNDLTPLANLSKL 181
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 252 LSRNAFNGS----IPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
L+R NG+ +P+ ++ L LD+S+N+LT +P + + CF L+ +N +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS-CFQLKYFYFFDNMVT 306
Query: 308 GHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL--YLSDNHLSGRIP 359
+F NL NL L ++GN + L+ + + GL YL DN +P
Sbjct: 307 --TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE-KSVTGLIFYLRDNRPEIPLP 358
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 463 LSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
L+ L L N + E+P ++ L +R++DLSHN L+ +PA L
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 460 LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIP 502
LPQL SL LGNN I +I V L L ++ + L N +S +P
Sbjct: 130 LPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP 170
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L+R +++ Q+ G +P +L L LS+N LQ + L L L + N
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL-EGPIPIEFCQL 389
T +L L LYL N L P L LE + ++NN+L E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL-LNGL 171
Query: 390 DYLTILDLSNNAIFGTLPSCF 410
+ L L L N+++ T+P F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGF 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,459,851
Number of Sequences: 62578
Number of extensions: 934574
Number of successful extensions: 2524
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1740
Number of HSP's gapped (non-prelim): 541
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)