Query 040297
Match_columns 773
No_of_seqs 626 out of 5293
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.5E-64 2.1E-68 603.9 44.1 543 39-680 68-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.3E-59 1.1E-63 562.6 42.5 521 64-681 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-41 2.6E-46 346.7 5.7 377 246-683 79-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.2E-38 4.8E-43 323.0 8.3 370 197-625 79-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.9E-41 6.2E-46 329.7 -14.1 488 16-652 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.5E-40 3.2E-45 324.7 -10.9 480 142-676 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.8E-35 4E-40 317.9 -4.9 311 7-403 13-323 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.4E-35 7.4E-40 315.8 -3.7 504 19-670 2-507 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.3E-33 5E-38 288.0 -2.4 383 149-648 9-395 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.7E-33 1E-37 285.8 -2.6 369 219-656 6-379 (1255)
11 KOG4237 Extracellular matrix p 99.9 9.4E-29 2E-33 242.2 -0.9 276 221-498 68-359 (498)
12 PLN03210 Resistant to P. syrin 99.9 3.7E-23 8E-28 250.3 26.2 339 215-626 553-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 2.7E-26 5.8E-31 225.0 -3.1 280 225-509 51-346 (498)
14 PLN03210 Resistant to P. syrin 99.9 2E-22 4.3E-27 244.0 26.7 342 236-650 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.6E-26 219.5 16.6 65 568-637 403-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 4E-21 8.7E-26 215.3 17.4 266 222-614 203-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.2E-19 6.9E-24 201.7 13.2 97 246-355 179-275 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.9E-19 1.5E-23 199.0 12.6 161 220-403 178-338 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.4E-19 9.5E-24 187.1 2.8 105 298-402 2-120 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-18 5.2E-23 181.5 4.9 272 200-496 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 5.1E-18 1.1E-22 148.0 -2.7 168 406-637 26-194 (264)
22 KOG0617 Ras suppressor protein 99.6 2.7E-18 5.8E-23 149.8 -5.2 178 435-676 31-212 (264)
23 PLN03150 hypothetical protein; 99.6 1E-15 2.2E-20 173.0 11.9 119 568-686 419-538 (623)
24 PLN03150 hypothetical protein; 99.2 2.1E-11 4.6E-16 138.1 9.4 113 486-656 419-532 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 5.8E-13 1.3E-17 137.9 -4.5 177 412-655 74-250 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 9.7E-13 2.1E-17 136.3 -3.2 196 388-650 73-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 5.9E-11 1.3E-15 128.8 9.0 180 413-658 116-296 (394)
28 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.5E-16 117.3 2.3 62 434-498 281-342 (490)
29 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.6E-15 126.5 7.2 179 220-408 116-295 (394)
30 KOG1909 Ran GTPase-activating 99.1 5.6E-11 1.2E-15 116.7 2.3 141 167-307 88-254 (382)
31 KOG1909 Ran GTPase-activating 99.1 3.9E-11 8.6E-16 117.7 1.2 176 315-500 27-228 (382)
32 KOG3207 Beta-tubulin folding c 99.0 7.9E-11 1.7E-15 118.8 3.0 211 169-381 119-341 (505)
33 KOG3207 Beta-tubulin folding c 99.0 5.2E-11 1.1E-15 120.0 0.7 163 193-355 118-284 (505)
34 KOG1259 Nischarin, modulator o 99.0 5.8E-11 1.3E-15 113.6 0.2 130 268-404 283-413 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 6E-10 1.3E-14 103.0 6.0 108 219-331 18-126 (175)
36 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-09 4.5E-14 99.5 5.7 124 367-493 20-148 (175)
37 PF13855 LRR_8: Leucine rich r 98.8 1.5E-09 3.3E-14 82.4 2.7 59 568-626 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.2E-14 81.8 2.9 61 591-651 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 5.9E-10 1.3E-14 121.0 -1.3 226 362-657 91-323 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.8 6.2E-09 1.3E-13 120.6 5.4 107 195-304 544-652 (889)
41 KOG0531 Protein phosphatase 1, 98.7 1.3E-09 2.9E-14 118.3 -0.7 241 364-675 70-317 (414)
42 KOG2120 SCF ubiquitin ligase, 98.7 4.9E-10 1.1E-14 107.4 -3.6 179 41-230 186-373 (419)
43 KOG4658 Apoptotic ATPase [Sign 98.6 6E-08 1.3E-12 112.6 8.2 203 194-404 521-731 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-08 2.7E-13 97.9 -2.7 178 197-377 186-374 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.7E-13 109.1 -4.3 109 565-679 185-295 (1096)
46 KOG1859 Leucine-rich repeat pr 98.3 3.1E-08 6.8E-13 106.1 -4.8 126 246-378 165-291 (1096)
47 KOG4579 Leucine-rich repeat (L 98.2 8.3E-08 1.8E-12 81.7 -2.7 59 568-628 78-136 (177)
48 KOG2982 Uncharacterized conser 98.2 3.6E-07 7.8E-12 88.1 0.4 223 4-258 34-262 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 1.2E-06 2.6E-11 83.5 2.0 143 165-308 86-256 (388)
50 KOG4579 Leucine-rich repeat (L 98.0 6.3E-07 1.4E-11 76.4 -1.8 84 220-307 53-136 (177)
51 COG5238 RNA1 Ran GTPase-activa 97.9 4.7E-06 1E-10 79.5 2.8 88 268-356 156-256 (388)
52 KOG4341 F-box protein containi 97.9 1.2E-06 2.5E-11 88.8 -1.9 85 15-99 138-225 (483)
53 PF12799 LRR_4: Leucine Rich r 97.9 6.2E-06 1.4E-10 57.0 2.3 36 592-628 2-37 (44)
54 KOG2982 Uncharacterized conser 97.9 1.1E-05 2.4E-10 78.1 3.9 205 169-373 69-286 (418)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.6E-10 54.9 2.6 38 567-605 1-38 (44)
56 KOG3665 ZYG-1-like serine/thre 97.8 5.8E-06 1.3E-10 93.8 0.2 159 15-202 122-281 (699)
57 PRK15386 type III secretion pr 97.8 6.1E-05 1.3E-09 78.7 7.4 32 591-625 156-187 (426)
58 KOG4341 F-box protein containi 97.7 2E-06 4.2E-11 87.2 -4.2 285 10-302 159-460 (483)
59 PF13306 LRR_5: Leucine rich r 97.7 8E-05 1.7E-09 66.4 6.2 104 191-301 7-110 (129)
60 KOG1644 U2-associated snRNP A' 97.7 7.6E-05 1.6E-09 68.6 5.8 85 244-331 41-126 (233)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00013 2.8E-09 65.0 6.3 55 244-301 11-65 (129)
62 KOG3665 ZYG-1-like serine/thre 97.6 4.6E-05 1E-09 86.6 3.7 148 148-298 123-279 (699)
63 PRK15386 type III secretion pr 97.5 0.00031 6.7E-09 73.5 8.1 54 195-255 51-104 (426)
64 KOG1644 U2-associated snRNP A' 97.5 0.00024 5.2E-09 65.4 6.1 83 414-498 43-126 (233)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00033 7.1E-09 67.4 1.9 90 3-98 31-124 (260)
66 KOG1947 Leucine rich repeat pr 96.9 0.00027 5.8E-09 79.2 0.4 112 194-305 186-306 (482)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00089 1.9E-08 64.5 2.7 88 9-97 59-150 (260)
68 KOG1947 Leucine rich repeat pr 96.3 0.00085 1.8E-08 75.1 -0.6 175 169-354 186-374 (482)
69 KOG2123 Uncharacterized conser 95.6 0.0013 2.8E-08 63.6 -2.7 79 267-348 39-123 (388)
70 PF00560 LRR_1: Leucine Rich R 95.3 0.0059 1.3E-07 35.0 0.3 11 594-604 3-13 (22)
71 KOG2123 Uncharacterized conser 95.3 0.0018 3.9E-08 62.6 -2.9 103 14-131 18-125 (388)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0062 1.4E-07 34.9 0.3 20 616-636 1-20 (22)
73 KOG0473 Leucine-rich repeat pr 93.1 0.0046 1E-07 58.3 -4.9 83 567-652 42-124 (326)
74 PF13504 LRR_7: Leucine rich r 92.2 0.09 2E-06 27.8 1.3 13 16-28 2-14 (17)
75 smart00369 LRR_TYP Leucine-ric 91.4 0.18 3.9E-06 30.1 2.2 22 14-36 1-22 (26)
76 smart00370 LRR Leucine-rich re 91.4 0.18 3.9E-06 30.1 2.2 22 14-36 1-22 (26)
77 PF13504 LRR_7: Leucine rich r 91.2 0.14 3.1E-06 27.1 1.4 13 270-282 2-14 (17)
78 KOG0473 Leucine-rich repeat pr 90.4 0.012 2.7E-07 55.5 -5.3 92 582-676 32-124 (326)
79 KOG4308 LRR-containing protein 90.2 0.0065 1.4E-07 66.3 -8.5 37 366-402 262-302 (478)
80 smart00370 LRR Leucine-rich re 89.8 0.28 6E-06 29.3 2.0 21 269-290 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 89.8 0.28 6E-06 29.3 2.0 21 269-290 2-22 (26)
82 TIGR00864 PCC polycystin catio 89.3 0.12 2.7E-06 65.9 0.4 38 645-682 1-38 (2740)
83 KOG4308 LRR-containing protein 89.0 0.009 2E-07 65.3 -8.6 113 244-356 171-304 (478)
84 KOG3864 Uncharacterized conser 84.8 0.26 5.6E-06 46.0 -0.3 91 6-98 92-184 (221)
85 PF13516 LRR_6: Leucine Rich r 81.9 0.47 1E-05 27.6 0.1 15 437-451 2-16 (24)
86 KOG3864 Uncharacterized conser 81.3 0.21 4.5E-06 46.6 -2.3 82 198-279 103-186 (221)
87 smart00365 LRR_SD22 Leucine-ri 71.3 3.8 8.3E-05 24.5 2.0 14 15-28 2-15 (26)
88 PF08693 SKG6: Transmembrane a 69.7 2.9 6.3E-05 27.8 1.3 27 715-741 13-39 (40)
89 smart00364 LRR_BAC Leucine-ric 67.3 3.8 8.3E-05 24.4 1.4 13 592-604 3-15 (26)
90 KOG4242 Predicted myosin-I-bin 61.3 38 0.00083 36.4 8.2 60 439-498 415-481 (553)
91 smart00368 LRR_RI Leucine rich 60.9 5.9 0.00013 24.1 1.5 14 615-628 2-15 (28)
92 KOG3763 mRNA export factor TAP 45.3 12 0.00026 40.9 1.6 39 435-475 242-284 (585)
93 PF15102 TMEM154: TMEM154 prot 40.8 12 0.00026 33.1 0.7 21 721-741 68-88 (146)
94 PF04478 Mid2: Mid2 like cell 38.4 17 0.00036 32.5 1.2 16 756-771 98-114 (154)
95 KOG4242 Predicted myosin-I-bin 37.7 98 0.0021 33.5 6.8 83 317-401 164-252 (553)
96 smart00082 LRRCT Leucine rich 35.9 14 0.00031 26.0 0.4 11 673-683 1-11 (51)
97 PHA03099 epidermal growth fact 35.6 18 0.00039 30.9 0.9 30 719-748 107-136 (139)
98 smart00367 LRR_CC Leucine-rich 33.9 31 0.00067 20.3 1.5 11 65-75 2-12 (26)
99 TIGR00864 PCC polycystin catio 29.7 30 0.00064 45.7 1.9 32 573-604 1-32 (2740)
100 KOG3763 mRNA export factor TAP 29.0 37 0.00079 37.3 2.2 12 344-355 272-283 (585)
101 PTZ00382 Variant-specific surf 28.7 38 0.00083 28.0 1.8 17 717-733 71-87 (96)
102 PF01102 Glycophorin_A: Glycop 21.5 33 0.00071 29.7 0.1 8 720-727 72-79 (122)
103 PF08114 PMP1_2: ATPase proteo 20.1 1.6E+02 0.0034 19.7 2.9 9 733-741 28-36 (43)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.5e-64 Score=603.90 Aligned_cols=543 Identities=32% Similarity=0.470 Sum_probs=493.5
Q ss_pred CCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCccc
Q 040297 39 FTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEP 118 (773)
Q Consensus 39 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~ 118 (773)
..+++.|||++|.+.+. ++..+..+++|++|++++|.+.+.+|...+..+++|++|+++ + |.+.+.++..
T Consensus 68 ~~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls-------~-n~l~~~~p~~- 137 (968)
T PLN00113 68 SSRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS-------N-NNFTGSIPRG- 137 (968)
T ss_pred CCcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECc-------C-CccccccCcc-
Confidence 45788999999988887 788889999999999999999888887566689999999987 6 4444444321
Q ss_pred ccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCC
Q 040297 119 LFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNL 198 (773)
Q Consensus 119 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L 198 (773)
.+ .+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ .++++|
T Consensus 138 --~l------------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 190 (968)
T PLN00113 138 --SI------------------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSL 190 (968)
T ss_pred --cc------------------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCC
Confidence 11 167788888888888899999999999999999999998888875 789999
Q ss_pred CEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeec
Q 040297 199 ETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISY 278 (773)
Q Consensus 199 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 278 (773)
++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 99999999999999999999999999999999999888888765 88999999999999999999999999999999999
Q ss_pred ccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCc
Q 040297 279 NQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358 (773)
Q Consensus 279 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 358 (773)
|.+++.+|..+.. +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+
T Consensus 270 n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 270 NKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 9999888887754 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCC
Q 040297 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSP 437 (773)
Q Consensus 359 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~ 437 (773)
|..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..+. +++|+.|++++|.+++..|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 99999999999999999999999999999999999999999999988887654 78999999999999999999999999
Q ss_pred CeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 438 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
+|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~---------- 497 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS---------- 497 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh----------
Confidence 99999999999999999988999999999999999998888765 5689999999999999988876654
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEe
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (773)
+++|+.|+|++|++++.+|..++.+++|++|+
T Consensus 498 ------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 498 ------------------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred ------------------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 34899999999999999999999999999999
Q ss_pred CCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 598 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|+.|++++|+++|.+|.. +++.++...++.|||++|
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC 608 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999985 788999999999999999
Q ss_pred CCC
Q 040297 678 GWP 680 (773)
Q Consensus 678 ~~~ 680 (773)
+.+
T Consensus 609 ~~~ 611 (968)
T PLN00113 609 GGD 611 (968)
T ss_pred CCc
Confidence 753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-59 Score=562.59 Aligned_cols=521 Identities=28% Similarity=0.462 Sum_probs=476.5
Q ss_pred CCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCC
Q 040297 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSV 143 (773)
Q Consensus 64 l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~ 143 (773)
..+++.|++++|.+.+.++. .|..+++|++|+|+ + |.+.+.++...+.+++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls-------~-n~~~~~ip~~~~~~l~-------------------- 118 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLS-------N-NQLSGPIPDDIFTTSS-------------------- 118 (968)
T ss_pred CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECC-------C-CccCCcCChHHhccCC--------------------
Confidence 35799999999999988876 89999999999998 6 4555555533333333
Q ss_pred CCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcC
Q 040297 144 TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLA 223 (773)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 223 (773)
+|++|++++|.+.+.+|. +.+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+..+++|+
T Consensus 119 ----~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 119 ----SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred ----CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 667777778888777775 457899999999999998888875 7899999999999999999999999999999
Q ss_pred EEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc
Q 040297 224 ILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303 (773)
Q Consensus 224 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 303 (773)
+|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+. .+++|+.|++++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 269 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQ 269 (968)
T ss_pred eeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcC
Confidence 9999999999888988765 88999999999999999999999999999999999999988887765 599999999999
Q ss_pred CcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcc
Q 040297 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP 383 (773)
Q Consensus 304 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 383 (773)
|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCC
Q 040297 384 IEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQ 462 (773)
Q Consensus 384 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 462 (773)
..+..+++|+.|++++|.+.+.+|..+. .+.++.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 9999999999999999999988887654 788999999999999999999999999999999999999999999999999
Q ss_pred CcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCC
Q 040297 463 LSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542 (773)
Q Consensus 463 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (773)
|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+.
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------------------------------ 473 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------------------------------ 473 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------------------------------------
Confidence 99999999999999999999999999999999999987775432
Q ss_pred CCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeC
Q 040297 543 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 622 (773)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 622 (773)
.++|+.||+++|++++.+|..+..+++|+.|+|++|.+++.+|+.++++++|++|+|
T Consensus 474 -----------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 474 -----------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred -----------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 247899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 623 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|++++.+|..+..+++|+.|++++|+++|.+|..+..+++++.+++++|++.+..|.
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999886653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-41 Score=346.74 Aligned_cols=377 Identities=22% Similarity=0.244 Sum_probs=278.5
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
.-+.|++++|.+....+..|.++++|+++++..|.++ .||.... ....++.|+|.+|.|+.+..+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3445666666666555566666666666666666665 5654332 2344666666666666655555666666666666
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 405 (773)
+.|.|+.+....|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 66666544334455445566666666666655555666666666666666666655555566666666666666666433
Q ss_pred CCCCC-CCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCC
Q 040297 406 LPSCF-SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCEL 484 (773)
Q Consensus 406 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 484 (773)
--..| .+++|+.|.+..|.+......+|.++.++++|+|+.|++...-..|+.+++.|+.|++++|.|..+-+.+....
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 22222 25666667777777777777788888889999999999887777888889999999999999988888888888
Q ss_pred CCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccc
Q 040297 485 KEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564 (773)
Q Consensus 485 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (773)
++|++|+|+.|+++..-+..|..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~--------------------------------------------------------- 339 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRV--------------------------------------------------------- 339 (873)
T ss_pred ccceeEeccccccccCChhHHHH---------------------------------------------------------
Confidence 99999999999988555554443
Q ss_pred ccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCcc---ccccCccCCeeeCccccCcccCCcccccCCCC
Q 040297 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT---TFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 641 (773)
+..|++|.|++|+++......|..+++|++|||++|.|++.+.+ .|.+|++|+.|++.+|++..+....|..+..|
T Consensus 340 -L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 340 -LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred -HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 45888999999999977777899999999999999999887764 48889999999999999998778899999999
Q ss_pred CEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCCC
Q 040297 642 AVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSK 683 (773)
Q Consensus 642 ~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~~ 683 (773)
+.|||.+|.+...-|.+|.++ .|+++.+..-.++|+|.+.|
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred ceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 999999999999999999888 89999988888999998754
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-38 Score=322.95 Aligned_cols=370 Identities=23% Similarity=0.243 Sum_probs=284.8
Q ss_pred CCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEe
Q 040297 197 NLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 276 (773)
Q Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 276 (773)
.-+.|++++|++....+..|.++++|+.+.+.+|.++ .||..... ..+|+.|+|.+|.|+....+++..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4577888888888887777888888888888888888 77765443 557888888888888777788888888888888
Q ss_pred ecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCC
Q 040297 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG 356 (773)
Q Consensus 277 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 356 (773)
|.|.|+ ++|...|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|+|.-
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 888888 7877666555678888888888888777788888888888888888886656677778888888888888874
Q ss_pred CcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCC-CCCCceeEEECCCccccccchhhhcC
Q 040297 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSC-FSPAFIEQVHLSKNKIEGQLESIIHD 435 (773)
Q Consensus 357 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~ 435 (773)
.--..|.++++|+.|.|..|.+.......|..+.+++.|+|+.|++...-.++ +.++.|+.|++++|.|..+-++.+.-
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 44557788888888888888887766777888888888888888887655543 45788888888888888877777777
Q ss_pred CCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcccc
Q 040297 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYH 515 (773)
Q Consensus 436 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~ 515 (773)
+++|++|+|++|+|+...+..|..+..|++|+|++|+++..-..+|..+++|+.|||++|.+++.+.+.-.
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~--------- 386 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV--------- 386 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh---------
Confidence 88888888888888877777788888888888888888766666777888888888888887755443111
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCe
Q 040297 516 EEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHA 595 (773)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 595 (773)
.| ..+++|+.|+|.+|++....-.+|.++.+|+.
T Consensus 387 --------------------------------------------~f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 387 --------------------------------------------AF--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred --------------------------------------------hh--ccchhhhheeecCceeeecchhhhccCcccce
Confidence 11 12567777888888887444466777888888
Q ss_pred EeCCCCcCCCCCccccccCccCCeeeCccc
Q 040297 596 LNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625 (773)
Q Consensus 596 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 625 (773)
|||.+|.|..+.|+.|..+ .|++|.+..-
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhccc
Confidence 8888888877777777777 7777766543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-41 Score=329.66 Aligned_cols=488 Identities=24% Similarity=0.342 Sum_probs=279.1
Q ss_pred CCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEE
Q 040297 16 SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHL 95 (773)
Q Consensus 16 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L 95 (773)
.++.|++++|.+. .+. .++.++..|.+|++++|++.. +|++++.+.+++.++.++|.+. ++|. .+..+.+|.+|
T Consensus 46 ~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKL 119 (565)
T ss_pred chhhhhhccCchh-hcc-HhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhh
Confidence 3455555555554 443 255555555555555555543 4555555555555555555555 4554 45555555555
Q ss_pred eCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCE
Q 040297 96 DMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKN 175 (773)
Q Consensus 96 ~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 175 (773)
+.+ +|. + .++|+.++.+..++.
T Consensus 120 ~~s-------~n~--------------------------------------------------~-~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 120 DCS-------SNE--------------------------------------------------L-KELPDSIGRLLDLED 141 (565)
T ss_pred hcc-------ccc--------------------------------------------------e-eecCchHHHHhhhhh
Confidence 544 311 1 123344555555666
Q ss_pred EECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCC
Q 040297 176 ADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255 (773)
Q Consensus 176 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 255 (773)
++..+|+++ ..|+.+ .++.++..+++.+|++....|..+. ++.|++||...|-++ .+|+.++. +.+|+.|++..|
T Consensus 142 l~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~N 216 (565)
T KOG0472|consen 142 LDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRN 216 (565)
T ss_pred hhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhc
Confidence 666666665 444443 3555666666666666544433333 556666666666555 56665554 556666666666
Q ss_pred ccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCcccc
Q 040297 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEIS 335 (773)
Q Consensus 256 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 335 (773)
++. ..| .|.+|..|++++++.|++. .+|+.....++++..||+..|+++. .|+.+.-+.+|.+||+++|.++ ..|
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp 291 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLP 291 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCC
Confidence 665 344 4666666666666666665 5666555555555555555555553 2344444555555555555555 345
Q ss_pred ccccCCCCCCeeeCcCCcCCCCcchhhcCCCC---CcEEE--cccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCC
Q 040297 336 DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSA---LEDIR--MSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF 410 (773)
Q Consensus 336 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 410 (773)
..++++ .|+.|-+.+|.+... -..+-+... |++|. +..-.++.. ..=+.=+ .....+..|+..
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~s--------e~~~e~~--~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQS--------EGGTETA--MTLPSESFPDIY 359 (565)
T ss_pred cccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCC--------ccccccc--CCCCCCcccchh
Confidence 555555 555555555555421 111111110 11110 000000000 0000000 000112233333
Q ss_pred CCCceeEEECCCccccccchhhhcCCC--CeeEEeCCCCccccccchhhhcCCCCcEE-EccCccccccCcccccCCCCC
Q 040297 411 SPAFIEQVHLSKNKIEGQLESIIHDSP--YLVTLDLSYNRFHGSIPNWINILPQLSSL-LLGNNYIEGEIPVQLCELKEV 487 (773)
Q Consensus 411 ~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L 487 (773)
...+.+.|++++-+++.++..+|..-. -.+..+++.|++. .+|..+..+..+.+. .+++|.+ +.+|..++.+++|
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kL 437 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcc
Confidence 355677777777777777666665432 3678888888887 677766666555443 4444444 4677778888888
Q ss_pred CEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccc
Q 040297 488 RLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILT 567 (773)
Q Consensus 488 ~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 567 (773)
..|++++|.+. .+|..++.+ .
T Consensus 438 t~L~L~NN~Ln-~LP~e~~~l----------------------------------------------------------v 458 (565)
T KOG0472|consen 438 TFLDLSNNLLN-DLPEEMGSL----------------------------------------------------------V 458 (565)
T ss_pred eeeecccchhh-hcchhhhhh----------------------------------------------------------h
Confidence 88888877664 566555432 2
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
.|+.||+|.|++. .+|..+..+..++.+-.++|++....|+.++++.+|..|||.+|.+. .+|..++++++|+.|+++
T Consensus 459 ~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 459 RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELD 536 (565)
T ss_pred hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEec
Confidence 5777888888877 77777777777777777778887666666888888888888888877 677778888888888888
Q ss_pred CCccc
Q 040297 648 YNNLS 652 (773)
Q Consensus 648 ~N~l~ 652 (773)
+|++.
T Consensus 537 gNpfr 541 (565)
T KOG0472|consen 537 GNPFR 541 (565)
T ss_pred CCccC
Confidence 88877
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-40 Score=324.73 Aligned_cols=480 Identities=25% Similarity=0.323 Sum_probs=360.1
Q ss_pred CCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCC
Q 040297 142 SVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQK 221 (773)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 221 (773)
.|.....+..+.+++|.+.. +.+.+.++..+.++++++|+++ ..|+++ +.+..++.++.++|++. .+|....++.+
T Consensus 40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~ 115 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLIS 115 (565)
T ss_pred hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhh
Confidence 34444467788888887654 3445778888999999999998 667665 67889999999999985 56778888999
Q ss_pred cCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 222 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
++.+++++|.+. ++|++++. +..++.++..+|+++ ..|..+.++.+|..+++.+|+++ ..|+.... +..|++||.
T Consensus 116 l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDC 190 (565)
T ss_pred hhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhccc
Confidence 999999999998 88888887 568999999999998 67888999999999999999998 77777665 889999999
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhc-CCCCCcEEEcccCcCCC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG-NLSALEDIRMSNNNLEG 380 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 380 (773)
.+|.++. +|+.++.+.+|..|++..|++. .+| .|.+|..|+.++++.|.+. .+|.... +++++..||+.+|++.
T Consensus 191 ~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 191 NSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred chhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence 9998874 5677899999999999999998 677 6899999999999999998 5565554 8999999999999998
Q ss_pred CccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCC-----CCeeE----EeCCCCcc--
Q 040297 381 PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS-----PYLVT----LDLSYNRF-- 449 (773)
Q Consensus 381 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~----L~Ls~n~l-- 449 (773)
+.|+.++-+.+|..||+++|.+++..+....+ .|+.|.+.+|.+..+-.+.+.+- +.|+. =.++...-
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 78999999999999999999999877766666 88999999998754322222110 00110 00111100
Q ss_pred -c-cccch----hhhcCCCCcEEEccCccccccCcccccCCCC---CCEEEccCCcCCCcCcchhhccCcCccc-cCCCC
Q 040297 450 -H-GSIPN----WINILPQLSSLLLGNNYIEGEIPVQLCELKE---VRLIDLSHNNLSGYIPACLVYTSLGEDY-HEEGP 519 (773)
Q Consensus 450 -~-~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~p~~~~~~~~~~~~-~~~~~ 519 (773)
+ ...+. ......+.+.|++++-+++ .+|.....-.. ...++++.|++. ++|..+....-.... .....
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC
Confidence 0 00010 1122445666666666666 34443332222 556666777664 555544332200000 00000
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCC
Q 040297 520 PTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 599 (773)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 599 (773)
. ..+. -..-+.++.|+.|+|++|-+. .+|.+++.+..|+.||+|
T Consensus 423 ~-----------------------------isfv------~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 423 K-----------------------------ISFV------PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred c-----------------------------cccc------hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence 0 0000 000022568999999999998 799999999999999999
Q ss_pred CCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCC
Q 040297 600 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 676 (773)
Q Consensus 600 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~l 676 (773)
+|++. .+|.+...+..||.+-.++|++....|+.+.++.+|..||+.+|.+.. ||..++.+++++.+.+.|||+-
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 99999 899999999999999999999998888889999999999999999985 4555899999999999999986
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=317.85 Aligned_cols=311 Identities=22% Similarity=0.279 Sum_probs=165.6
Q ss_pred ccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhh
Q 040297 7 VLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDF 86 (773)
Q Consensus 7 l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~ 86 (773)
||..+..-.+++.|++..|.+- ..|-+.+.+.-+|+.||+|+|.+.. .|..+..+.+|+.|+++.|.+. .+|. ..
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~-s~ 87 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPS-SC 87 (1081)
T ss_pred cchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCch-hh
Confidence 4444444444555555555443 3332334444445555555555543 3455555555555555555554 4443 44
Q ss_pred cCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChh
Q 040297 87 RKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKF 166 (773)
Q Consensus 87 ~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 166 (773)
.++.+|++|.|. + | .....|..
T Consensus 88 ~~~~~l~~lnL~-------~--------------------------------------------------n-~l~~lP~~ 109 (1081)
T KOG0618|consen 88 SNMRNLQYLNLK-------N--------------------------------------------------N-RLQSLPAS 109 (1081)
T ss_pred hhhhcchhheec-------c--------------------------------------------------c-hhhcCchh
Confidence 555555555544 2 1 11234555
Q ss_pred hcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG 246 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 246 (773)
+..+.+|+.|+++.|++. .+|.-+ ..+..++.+..++|..... ++... ++.+++..|.+.+.++.++.. +.+
T Consensus 110 ~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~ 181 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH 181 (1081)
T ss_pred HHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhh-hhe
Confidence 566666666666666664 455443 4566666666666621111 11111 555666666665555555443 222
Q ss_pred CcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcc
Q 040297 247 LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLD 326 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 326 (773)
.|+|.+|.+. ...+.++++|+.|....|++. .+.. .-++|+.|+.++|.++...+. ....+|++++++
T Consensus 182 --~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis 249 (1081)
T KOG0618|consen 182 --QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDIS 249 (1081)
T ss_pred --eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecc
Confidence 4666666654 123555666666666666665 3321 235566666666666533222 123456666666
Q ss_pred cccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 327 GNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 327 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
.|+++ .+|+++..+.+|+.++...|++. .+|..+....+|+.|++..|.+. .+|....+...|++|+|..|.+.
T Consensus 250 ~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 250 HNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence 66666 44566666666666666666664 55555666666666666666665 34445555666666666666654
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-35 Score=315.78 Aligned_cols=504 Identities=22% Similarity=0.281 Sum_probs=381.8
Q ss_pred EEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCc
Q 040297 19 TLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMG 98 (773)
Q Consensus 19 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls 98 (773)
.+|.+...+. .|| ..+..-..++.|+++.|-+.... -+.+...-+|+.||+++|++. ..|. .+..++.|+.|+++
T Consensus 2 ~vd~s~~~l~-~ip-~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s 76 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIP-EQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLS 76 (1081)
T ss_pred CcccccccCc-ccc-hhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccc
Confidence 3566777666 666 35555555777777777654421 122333445777777777665 4454 55556666666655
Q ss_pred chhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEEC
Q 040297 99 WVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADL 178 (773)
Q Consensus 99 ~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 178 (773)
. |.+ ...|....++.+|+++.|
T Consensus 77 -------~--------------------------------------------------n~i-~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 77 -------R--------------------------------------------------NYI-RSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred -------h--------------------------------------------------hhH-hhCchhhhhhhcchhhee
Confidence 3 211 124456778888999999
Q ss_pred CCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccC
Q 040297 179 SHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFN 258 (773)
Q Consensus 179 ~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (773)
..|.+. ..|..+ ..+.+|++|+++.|.+ +.+|..+..+..+..++.++|.....++ . ..++.+++..|.+.
T Consensus 99 ~~n~l~-~lP~~~-~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~--~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASI-SELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLG----Q--TSIKKLDLRLNVLG 169 (1081)
T ss_pred ccchhh-cCchhH-Hhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhc----c--ccchhhhhhhhhcc
Confidence 988876 788875 7899999999999998 5678888889999999999992221222 2 24888999999999
Q ss_pred ccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccc
Q 040297 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSL 338 (773)
Q Consensus 259 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 338 (773)
+.++..+..+.. .|||++|.+. ... ...+.+|+.|....|+++...- .-++|+.|+.++|.++...+..
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p- 238 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHP- 238 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecccc-
Confidence 888888888777 7999999886 332 2348899999999999875432 3578999999999998444432
Q ss_pred cCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEE
Q 040297 339 SNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQV 418 (773)
Q Consensus 339 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 418 (773)
.-.+|++++++.|+++ .+|.+++.+.+|+.++..+|++. .+|..+....+|+.|.+..|.+....|..-....|+.|
T Consensus 239 -~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 -VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred -ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence 2368999999999999 56799999999999999999995 78888889999999999999998666655558899999
Q ss_pred ECCCccccccchhhhcCCCC-eeEEeCCCCccccccch-hhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCc
Q 040297 419 HLSKNKIEGQLESIIHDSPY-LVTLDLSYNRFHGSIPN-WINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNN 496 (773)
Q Consensus 419 ~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 496 (773)
++..|++...++..+..... |..|+.+.|++.. .|. .=...+.|+.|++.+|.++...-+.+.++++|+.|+|++|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 99999998877766666554 8888889898874 342 11236789999999999998888889999999999999999
Q ss_pred CCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEeccc
Q 040297 497 LSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC 576 (773)
Q Consensus 497 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 576 (773)
+. .+|+... ..+..|++|+||+
T Consensus 395 L~-~fpas~~---------------------------------------------------------~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 395 LN-SFPASKL---------------------------------------------------------RKLEELEELNLSG 416 (1081)
T ss_pred cc-cCCHHHH---------------------------------------------------------hchHHhHHHhccc
Confidence 96 4554322 1245899999999
Q ss_pred CcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 577 NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 577 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
|+++ .+|+.+..+..|++|...+|+|. ..| .+.++++|+.+|+|.|+++...-..-..-++|++||+++|.-.....
T Consensus 417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~ 493 (1081)
T KOG0618|consen 417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH 493 (1081)
T ss_pred chhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch
Confidence 9999 89999999999999999999999 778 78999999999999999986443332233899999999997433444
Q ss_pred CCCcccccCCcCcc
Q 040297 657 DRVAQFSTFEEDSY 670 (773)
Q Consensus 657 ~~~~~~~~l~~~~l 670 (773)
+.+..+..+...++
T Consensus 494 ~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 494 KTLKVLKSLSQMDI 507 (1081)
T ss_pred hhhHHhhhhhheec
Confidence 44444444444333
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-33 Score=288.00 Aligned_cols=383 Identities=25% Similarity=0.337 Sum_probs=233.0
Q ss_pred ccEEEccCCCCC-CCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEc
Q 040297 149 LTSISLSGYIDG-GTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227 (773)
Q Consensus 149 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 227 (773)
.+-.++++|.++ +.+|.....++.++.|.|....+. .+|+.+ +.+.+|++|.+++|++... -..+..++.|+.+++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 455677777777 347777777777777777777765 667765 6777777777777776432 345666777777777
Q ss_pred cCCcCc-cCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcC
Q 040297 228 SKNFFQ-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL 306 (773)
Q Consensus 228 s~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 306 (773)
..|++. .-+|..+|. +..|..|||++|++. ..|..+..-+++-+|+||+|+|. .||..++.++..|-.||||+|++
T Consensus 86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 777663 346666765 667777777777776 56666777777777777777776 77777666666666666666666
Q ss_pred CCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCC-CCcchhhcCCCCCcEEEcccCcCCCCcccc
Q 040297 307 QGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS-GRIPRWLGNLSALEDIRMSNNNLEGPIPIE 385 (773)
Q Consensus 307 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 385 (773)
... |+.+..+.+|++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|++
T Consensus 163 e~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 EML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 533 334455556666666665544222222333444444444443211 123444444444444444444443 33444
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcE
Q 040297 386 FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSS 465 (773)
Q Consensus 386 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 465 (773)
+-.+++|+.|+||+| +|+ ......+...+|++
T Consensus 241 ly~l~~LrrLNLS~N-----------------------------------------------~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN-----------------------------------------------KIT-ELNMTEGEWENLET 272 (1255)
T ss_pred HhhhhhhheeccCcC-----------------------------------------------cee-eeeccHHHHhhhhh
Confidence 444444444444444 333 12222223344555
Q ss_pred EEccCccccccCcccccCCCCCCEEEccCCcCC-CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCC
Q 040297 466 LLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS-GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPM 544 (773)
Q Consensus 466 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (773)
|+|+.|+++ .+|.+++.+++|+.|.+.+|+++ .-+|+.++.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK------------------------------------- 314 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK------------------------------------- 314 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh-------------------------------------
Confidence 555555555 45555555566665555555553 123333332
Q ss_pred CCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcc
Q 040297 545 GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624 (773)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 624 (773)
+..|+.+..++|.+. .+|+.+..+..|+.|.|++|++. ..|+.+.-++.|+.||+..
T Consensus 315 ---------------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 315 ---------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred ---------------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccC
Confidence 336677777777777 78888999999999999999988 7889999999999999999
Q ss_pred ccCcccCCcccccCCCCCEEEccC
Q 040297 625 NLLHGKIPSQLTVLNTLAVFKVAY 648 (773)
Q Consensus 625 N~l~~~~p~~l~~l~~L~~L~ls~ 648 (773)
|+-.-.+|.--..-++|+.-++..
T Consensus 372 NpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 372 NPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred CcCccCCCCcchhhhcceeeecce
Confidence 976645553333335666655543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.7e-33 Score=285.75 Aligned_cols=369 Identities=26% Similarity=0.358 Sum_probs=284.5
Q ss_pred CCCcCEEEccCCcCc-cCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCcc
Q 040297 219 YQKLAILDVSKNFFQ-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 297 (773)
++-.+-.|+++|.++ +..|..+-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+. .++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence 556677899999988 567777665 788999999988887 78899999999999999999887 6655554 488889
Q ss_pred EEEcccCcCCC-cCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccC
Q 040297 298 ILALSNNNLQG-HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNN 376 (773)
Q Consensus 298 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 376 (773)
.+.+..|++.. -+|..+..+..|+.|||++|+++ ..|..+..-+++-.|+|++|+|..+....|.++..|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 99999988864 45667778999999999999998 77888888888999999999998655567778888889999999
Q ss_pred cCCCCccccccCCCCCcEEEccCCCCCCC-CCCCCCCCceeEEECCCcccc-ccchhhhcCCCCeeEEeCCCCccccccc
Q 040297 377 NLEGPIPIEFCQLDYLTILDLSNNAIFGT-LPSCFSPAFIEQVHLSKNKIE-GQLESIIHDSPYLVTLDLSYNRFHGSIP 454 (773)
Q Consensus 377 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 454 (773)
++. .+|..+..+..|++|+|++|.+... +...-++++|+.|.+++.+-+ ..+|..+.++.+|..+|+|.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 987 5667788888999999999887431 112223566777777776533 345666777788888888888887 678
Q ss_pred hhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCC
Q 040297 455 NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSP 534 (773)
Q Consensus 455 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (773)
+.+-.+++|+.|+|++|+|+ .+........+|+.|++|+|+++ .+|.++..
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 88888888888888888887 44555666777888888888886 56666554
Q ss_pred CCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc-cCChhhhccCCCCeEeCCCCcCCCCCcccccc
Q 040297 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 613 (773)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 613 (773)
++.|+.|++.+|+++- -||..++.+.+|+++..++|.+. ..|+.+..
T Consensus 290 -------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR 337 (1255)
T KOG0444|consen 290 -------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR 337 (1255)
T ss_pred -------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh
Confidence 3467777777777663 46777888888888888888887 77888888
Q ss_pred CccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 614 LKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 614 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
+..|+.|.|++|++. .+|+.+.-++.|++||+..|+--...|
T Consensus 338 C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 888888888888876 677788888888888888886444444
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=9.4e-29 Score=242.16 Aligned_cols=276 Identities=20% Similarity=0.199 Sum_probs=184.1
Q ss_pred CcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeec-ccCCCccchhHhhcCCCccEE
Q 040297 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISY-NQLTGEIPERMATGCFLLEIL 299 (773)
Q Consensus 221 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L 299 (773)
.-..++|..|.|+ .+|...|+.+++|+.|||++|+|+.+.|++|.++++|.+|-+.+ |+|+ .+|...|.++.+++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4456666666666 67777777777777777777777777777777777776665555 6776 7777777777777777
Q ss_pred EcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCC------------CCcchhhcCCCC
Q 040297 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS------------GRIPRWLGNLSA 367 (773)
Q Consensus 300 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~ 367 (773)
.+.-|++.-+..+.|..++++..|.+-+|.+..+-...|..+..++.+.+..|.+. ...|..+++..-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 77777777777777777777777777777776443346777777777777766621 122223333333
Q ss_pred CcEEEcccCcCCCCccccccCC-CCCcEEEccCCCCCCCCC-CCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeC
Q 040297 368 LEDIRMSNNNLEGPIPIEFCQL-DYLTILDLSNNAIFGTLP-SCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDL 444 (773)
Q Consensus 368 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 444 (773)
..-..+.+.++..+.+..|... ..+..=-.+.+...+..| .+|. +++|+.|++++|+++++.+.+|.+...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 3333444444443333333221 222111112222222333 2333 778888888888888888888888888888888
Q ss_pred CCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 445 SYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 445 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|..|.+-.|.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888666677888888888888888888888888888888888888888775
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.7e-23 Score=250.31 Aligned_cols=339 Identities=22% Similarity=0.230 Sum_probs=196.1
Q ss_pred CccCCCCcCEEEccCCc------CccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchh
Q 040297 215 PIHSYQKLAILDVSKNF------FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPER 288 (773)
Q Consensus 215 ~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 288 (773)
.|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|++|++++|.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 35555666666654432 122344444332235666666666554 445444 3456666666666655 45544
Q ss_pred HhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCC
Q 040297 289 MATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368 (773)
Q Consensus 289 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 368 (773)
+. .+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus 630 ~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 VH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 32 35666666666554333333 24556666666666655444566666666666666666654333445433 45666
Q ss_pred cEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccc-------cccchhhhcCCCCeeE
Q 040297 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKI-------EGQLESIIHDSPYLVT 441 (773)
Q Consensus 369 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l-------~~~~~~~~~~~~~L~~ 441 (773)
+.|++++|......|.. ..+|+.|++++|.+. .+|....+++|+.|++.++.. ....+..+..+++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 66666666544333322 345666666666654 344444455666666655321 1112222333466777
Q ss_pred EeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCC
Q 040297 442 LDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPT 521 (773)
Q Consensus 442 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 521 (773)
|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------------ 843 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------------ 843 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------------
Confidence 7777776666677777777777777777765444566544 577777777777654322221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCC
Q 040297 522 SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN 601 (773)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 601 (773)
..++++.|+|++|.++ .+|..+..+++|++|+|++|
T Consensus 844 -------------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 844 -------------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred -------------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 1236777788888777 67777777888888888774
Q ss_pred cCCCCCccccccCccCCeeeCcccc
Q 040297 602 NLTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 602 ~l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+-...+|..+..+++|+.+++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 4333566667777777777777774
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-26 Score=225.01 Aligned_cols=280 Identities=20% Similarity=0.203 Sum_probs=218.9
Q ss_pred EEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc-
Q 040297 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN- 303 (773)
Q Consensus 225 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~- 303 (773)
.+-++-.++ ++|..+. +.-.+++|..|+|+.+.|.+|+.+++|+.|||++|+|+ .|....|.++.++..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344444555 7776653 47889999999999888899999999999999999999 88888888999988877665
Q ss_pred CcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCC---
Q 040297 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG--- 380 (773)
Q Consensus 304 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 380 (773)
|+|+......|.++..++.|.+.-|++.-+..+.|..++++..|.+.+|.+..+.-..|..+..++.+.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 99999888999999999999999999998888899999999999999999985544588899999999988887421
Q ss_pred ---------CccccccCCCCCcEEEccCCCCCCCCCCCCCCC--ceeEEECCCcccc-ccchhhhcCCCCeeEEeCCCCc
Q 040297 381 ---------PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPA--FIEQVHLSKNKIE-GQLESIIHDSPYLVTLDLSYNR 448 (773)
Q Consensus 381 ---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~ 448 (773)
..|..+++..-..-..+.+.++....+..|.+. .+..-..+.+... ..+...|..+++|++|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 122333333333334444444444444333322 2211112223233 3344678999999999999999
Q ss_pred cccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccC
Q 040297 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS 509 (773)
Q Consensus 449 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 509 (773)
++++-+.+|.....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|....
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 9999999999999999999999999977778899999999999999999988888876654
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2e-22 Score=243.97 Aligned_cols=342 Identities=22% Similarity=0.238 Sum_probs=246.2
Q ss_pred CchhHhhCCCCCcEEEccCCc------cCccCchhhhCCC-CCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCC
Q 040297 236 IPVEIGTYLPGLMDLNLSRNA------FNGSIPSSFADMK-MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG 308 (773)
Q Consensus 236 ~~~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 308 (773)
+....|..+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 344455567888888886553 2234566666664 5888888888877 777665 26788888888888764
Q ss_pred cCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccC
Q 040297 309 HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ 388 (773)
Q Consensus 309 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 388 (773)
.+..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ +
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 345567788888888887765445664 6778888888888877666778888888888888888876555666544 6
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc-------cccchhhhcCC
Q 040297 389 LDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH-------GSIPNWINILP 461 (773)
Q Consensus 389 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-------~~~~~~~~~l~ 461 (773)
+++|+.|++++|...+.+|.. ..+|+.|++++|.+... |..+ .+++|++|++.++... ...+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 788888888888665555543 45788888888887643 3322 4677777877764321 11122233356
Q ss_pred CCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCC
Q 040297 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSG 541 (773)
Q Consensus 462 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (773)
+|+.|++++|...+.+|..+.++++|+.|++++|...+.+|...
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 88888888888777788888888888888888876544555322
Q ss_pred CCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeee
Q 040297 542 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLD 621 (773)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld 621 (773)
.+++|+.|++++|..-..+|.. .++|++|+|++|.++ .+|..+..+++|+.|+
T Consensus 823 -----------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 823 -----------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred -----------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 1458899999998655456653 367999999999998 7898999999999999
Q ss_pred CccccCcccCCcccccCCCCCEEEccCCc
Q 040297 622 LSYNLLHGKIPSQLTVLNTLAVFKVAYNN 650 (773)
Q Consensus 622 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 650 (773)
|++|+-...+|..+..+++|+.+++++|.
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99965445678888899999999999985
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.2e-21 Score=219.50 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=39.5
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
.|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 4556666666666 345432 34566666666666 56666666666666666666666666655533
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4e-21 Score=215.28 Aligned_cols=266 Identities=23% Similarity=0.328 Sum_probs=151.9
Q ss_pred cCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 222 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeec
Confidence 344555555555 4554432 245555555555542 332 1344555555555554 44421 234444444
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP 381 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 381 (773)
++|.+.. +|..+ ++|+.|++++|+++. +|. ..++|+.|++++|.+.+
T Consensus 270 s~N~L~~-------------------------Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 270 FSNPLTH-------------------------LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred cCCchhh-------------------------hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence 4444443 22211 334445555555442 222 12345555555555543
Q ss_pred ccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCC
Q 040297 382 IPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILP 461 (773)
Q Consensus 382 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 461 (773)
+|.. ..+|+.|++++|.+++ +|.. +.+|+.|++++|+++..++ . .++|+.|++++|+++. +|.. .+
T Consensus 317 Lp~l---p~~L~~L~Ls~N~L~~-LP~l--p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 317 LPAL---PSELCKLWAYNNQLTS-LPTL--PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCCC---cccccccccccCcccc-cccc--ccccceEecCCCccCCCCC-C---Ccccceehhhcccccc-Cccc---cc
Confidence 2221 1234455555555543 2221 2356666666666654322 1 2457777788887773 5543 35
Q ss_pred CCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCC
Q 040297 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSG 541 (773)
Q Consensus 462 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (773)
+|+.|++++|++++ +|.. .++|+.|++++|++++ +|..
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l------------------------------------- 420 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML------------------------------------- 420 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc-------------------------------------
Confidence 68888888888874 4532 3578889999998874 4431
Q ss_pred CCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccC
Q 040297 542 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614 (773)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 614 (773)
+..|+.|++++|+++ .+|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 421 ------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 ------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 125677999999998 789999999999999999999998888776443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.2e-19 Score=201.65 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=44.8
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..++ .+|+.|++++|.+++. |..+ ..+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence 4555666665555 2443332 34556666666655 5554432 3455555555555432 2222 124444555
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 355 (773)
++|++. .+|..+. ++|+.|++++|+++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 554444 3333322 23444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.9e-19 Score=198.96 Aligned_cols=161 Identities=24% Similarity=0.303 Sum_probs=105.2
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEE
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 299 (773)
.+.+.|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 35677888888887 6776543 47888888888887 4555443 57888888888887 7776543 468888
Q ss_pred EcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCC
Q 040297 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379 (773)
Q Consensus 300 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 379 (773)
++++|.+..+ |..+ ..+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+.
T Consensus 247 ~Ls~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ELSINRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ECcCCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 8888888743 4443 247888888888887 4565443 467777887777763 343332 35666666666665
Q ss_pred CCccccccCCCCCcEEEccCCCCC
Q 040297 380 GPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 380 ~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
. +|..+ .++|+.|++++|.++
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALT 338 (754)
T ss_pred c-CCccc--cccceeccccCCccc
Confidence 3 33322 145555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=4.4e-19 Score=187.15 Aligned_cols=105 Identities=26% Similarity=0.219 Sum_probs=50.3
Q ss_pred EEEcccCcCCC-cCcccccCCCCCcEEEcccccCCcc----ccccccCCCCCCeeeCcCCcCCC------CcchhhcCCC
Q 040297 298 ILALSNNNLQG-HIFSKKFNLTNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSG------RIPRWLGNLS 366 (773)
Q Consensus 298 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~ 366 (773)
.|+|..+.+++ .....+..+.+|++++++++.++.. ++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35555666552 2223334455566666666666422 33334455556666666655541 1223344455
Q ss_pred CCcEEEcccCcCCCCccccccCCCC---CcEEEccCCCC
Q 040297 367 ALEDIRMSNNNLEGPIPIEFCQLDY---LTILDLSNNAI 402 (773)
Q Consensus 367 ~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l 402 (773)
+|+.|++++|.+.+..+..+..+.. |+.|++++|.+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 5555555555554333333332222 44444444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.4e-18 Score=181.51 Aligned_cols=272 Identities=23% Similarity=0.238 Sum_probs=136.3
Q ss_pred EEEccCCcCcc-CCccCccCCCCcCEEEccCCcCccC----CchhHhhCCCCCcEEEccCCccCc------cCchhhhCC
Q 040297 200 TLLLANNSLFG-SFRMPIHSYQKLAILDVSKNFFQGH----IPVEIGTYLPGLMDLNLSRNAFNG------SIPSSFADM 268 (773)
Q Consensus 200 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l 268 (773)
.|+|..+.+++ .....+..+..|++|+++++.++.. ++..+. ..+.+++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 45666666653 2233345566678888887776422 222222 24567777777776652 233456667
Q ss_pred CCCcEEEeecccCCCccchhHhhcCCC---ccEEEcccCcCCC----cCcccccCC-CCCcEEEcccccCCcc----ccc
Q 040297 269 KMLERLDISYNQLTGEIPERMATGCFL---LEILALSNNNLQG----HIFSKKFNL-TNLMRLQLDGNNFTGE----ISD 336 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~ 336 (773)
++|++|++++|.+.+..+..+. .+.+ |++|++++|.+.+ .+...+..+ ++|++|++++|.+++. ++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 7777777777776643333322 2333 6666666666652 111223344 5666666666665521 223
Q ss_pred cccCCCCCCeeeCcCCcCCCC----cchhhcCCCCCcEEEcccCcCCCCc----cccccCCCCCcEEEccCCCCCCCCCC
Q 040297 337 SLSNCRLLAGLYLSDNHLSGR----IPRWLGNLSALEDIRMSNNNLEGPI----PIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 337 ~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
.+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.. ...+..+++|+.|++++|.+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~----- 234 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT----- 234 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc-----
Confidence 344445566666665555531 1222333445555555555554221 122333444555555544443
Q ss_pred CCCCCceeEEECCCccccccchhhh-----cCCCCeeEEeCCCCcccc----ccchhhhcCCCCcEEEccCcccccc---
Q 040297 409 CFSPAFIEQVHLSKNKIEGQLESII-----HDSPYLVTLDLSYNRFHG----SIPNWINILPQLSSLLLGNNYIEGE--- 476 (773)
Q Consensus 409 ~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~--- 476 (773)
+.....+ ...+.|++|++++|.+++ .+...+..+++|+.+++++|.+...
T Consensus 235 ------------------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 235 ------------------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred ------------------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 2111111 112456666666665542 1223334445666666666666533
Q ss_pred -CcccccCC-CCCCEEEccCCc
Q 040297 477 -IPVQLCEL-KEVRLIDLSHNN 496 (773)
Q Consensus 477 -~~~~~~~l-~~L~~L~L~~N~ 496 (773)
....+... +.|+.+++.+|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCC
Confidence 22233333 456666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=5.1e-18 Score=148.02 Aligned_cols=168 Identities=29% Similarity=0.487 Sum_probs=127.1
Q ss_pred CCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC
Q 040297 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK 485 (773)
Q Consensus 406 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 485 (773)
++..|.+..++.|.+++|+++...| .++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 4455556677777777777775544 4567788888888888888 67778888888888888888887 7888888888
Q ss_pred CCCEEEccCCcCCC-cCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccc
Q 040297 486 EVRLIDLSHNNLSG-YIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564 (773)
Q Consensus 486 ~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (773)
.|+.||+++|++.. .+|..|..
T Consensus 103 ~levldltynnl~e~~lpgnff~--------------------------------------------------------- 125 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------- 125 (264)
T ss_pred hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence 88888888888763 23433332
Q ss_pred ccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
++.|+.|+|++|.+. .+|..++.+++|+.|.+..|.+- ..|..++.+++|++|++.+|+++ .+|.+++.
T Consensus 126 -m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 126 -MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred -HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 346777888888887 77888888888888888888887 67888888888888888888887 45555444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.7e-18 Score=149.77 Aligned_cols=178 Identities=27% Similarity=0.457 Sum_probs=149.5
Q ss_pred CCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccc
Q 040297 435 DSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDY 514 (773)
Q Consensus 435 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~ 514 (773)
.+..++.|.+|+|+++ .+|..+..+.+|++|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs------- 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS------- 100 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-------
Confidence 4567889999999999 67778899999999999999998 78999999999999999999886 56666554
Q ss_pred cCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc-cCChhhhccCCC
Q 040297 515 HEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRI 593 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L 593 (773)
++.|+.|||+.|++.. ..|..|..++.|
T Consensus 101 ---------------------------------------------------~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 101 ---------------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred ---------------------------------------------------CchhhhhhccccccccccCCcchhHHHHH
Confidence 3478899999999875 578899999999
Q ss_pred CeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccC---CcCcc
Q 040297 594 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTF---EEDSY 670 (773)
Q Consensus 594 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l---~~~~l 670 (773)
+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|.+++.++.|+.|.+.+|+++...|. ++++.-. .....
T Consensus 130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~ 206 (264)
T KOG0617|consen 130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRM 206 (264)
T ss_pred HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhh
Confidence 99999999998 88889999999999999999988 7899999999999999999999977765 4544321 22335
Q ss_pred cCCCCC
Q 040297 671 EGNPFL 676 (773)
Q Consensus 671 ~~Np~l 676 (773)
+.|||.
T Consensus 207 E~NPwv 212 (264)
T KOG0617|consen 207 EENPWV 212 (264)
T ss_pred hhCCCC
Confidence 566664
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=1e-15 Score=173.05 Aligned_cols=119 Identities=33% Similarity=0.601 Sum_probs=108.9
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCccc-ccCCcCcccCCCCCCCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGWPLSKSCD 686 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~-~~l~~~~l~~Np~lC~~~l~~~c~ 686 (773)
+|+++|.+|..++.. ..+..+++.+|+++|++|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 355678899999999987655663
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=2.1e-11 Score=138.15 Aligned_cols=113 Identities=31% Similarity=0.508 Sum_probs=100.8
Q ss_pred CCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccc
Q 040297 486 EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI 565 (773)
Q Consensus 486 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (773)
.++.|+|++|.+.|.+|..+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~---------------------------------------------------------- 440 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK---------------------------------------------------------- 440 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC----------------------------------------------------------
Confidence 4778999999999999987764
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC-CCCCEE
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL-NTLAVF 644 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L 644 (773)
+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 3489999999999999999999999999999999999999999999999999999999999999999998764 467889
Q ss_pred EccCCcccccCC
Q 040297 645 KVAYNNLSGKIP 656 (773)
Q Consensus 645 ~ls~N~l~~~~p 656 (773)
++++|....-.|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999997543344
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=5.8e-13 Score=137.94 Aligned_cols=177 Identities=28% Similarity=0.438 Sum_probs=143.6
Q ss_pred CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEE
Q 040297 412 PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491 (773)
Q Consensus 412 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 491 (773)
+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|..++|+.|+++ ..|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888876 44556666777888888888887 67888888888888888888887 6777777776 78888
Q ss_pred ccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccE
Q 040297 492 LSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSG 571 (773)
Q Consensus 492 L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 571 (773)
+++|+++ .+|..++. +..|..
T Consensus 150 ~sNNkl~-~lp~~ig~----------------------------------------------------------~~tl~~ 170 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL----------------------------------------------------------LPTLAH 170 (722)
T ss_pred EecCccc-cCCccccc----------------------------------------------------------chhHHH
Confidence 8888886 45554431 347888
Q ss_pred EecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcc
Q 040297 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 572 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 651 (773)
||.+.|++. .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|.|+++ .||..|..|..|++|-|.+|+|
T Consensus 171 ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 171 LDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence 999999998 78999999999999999999999 677777755 5778999999998 8999999999999999999999
Q ss_pred cccC
Q 040297 652 SGKI 655 (773)
Q Consensus 652 ~~~~ 655 (773)
+.+.
T Consensus 247 qSPP 250 (722)
T KOG0532|consen 247 QSPP 250 (722)
T ss_pred CCCh
Confidence 8543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=9.7e-13 Score=136.32 Aligned_cols=196 Identities=25% Similarity=0.402 Sum_probs=162.7
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEE
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 467 (773)
.+..-...|++.|++.....+...+..|+.+.+..|.+. .+|..+.++..|+++||+.|+++ ..|..+..+| |++|.
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 455567889999999855544444778999999999886 45667888999999999999999 7888888877 99999
Q ss_pred ccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 468 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
+++|+++ .+|..++.++.|..||.+.|.+. .+|..++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~---------------------------------------- 187 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY---------------------------------------- 187 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh----------------------------------------
Confidence 9999998 78889999999999999999996 55655543
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
+.+|+.|.+..|++. ..|+++..|+ |..||+|+|+++ .+|-+|.+|+.|++|-|.+|+|
T Consensus 188 ------------------l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 188 ------------------LTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ------------------HHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence 458888999999998 6888888664 999999999999 8999999999999999999999
Q ss_pred cccCCccc---ccCCCCCEEEccCCc
Q 040297 628 HGKIPSQL---TVLNTLAVFKVAYNN 650 (773)
Q Consensus 628 ~~~~p~~l---~~l~~L~~L~ls~N~ 650 (773)
. ..|..+ +...-.++|+..-++
T Consensus 247 q-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 247 Q-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-CChHHHHhccceeeeeeecchhcc
Confidence 8 556554 334455788888775
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=5.9e-11 Score=128.85 Aligned_cols=180 Identities=31% Similarity=0.446 Sum_probs=109.5
Q ss_pred CceeEEECCCccccccchhhhcCC-CCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEE
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDS-PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 491 (773)
+.++.+++.+|.++.+.+. .... ++|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 3444555555544433321 2222 25666666666666 34445666677777777777766 3444444666677777
Q ss_pred ccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccE
Q 040297 492 LSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSG 571 (773)
Q Consensus 492 L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 571 (773)
+++|++. .+|.... .+..|++
T Consensus 193 ls~N~i~-~l~~~~~----------------------------------------------------------~~~~L~~ 213 (394)
T COG4886 193 LSGNKIS-DLPPEIE----------------------------------------------------------LLSALEE 213 (394)
T ss_pred ccCCccc-cCchhhh----------------------------------------------------------hhhhhhh
Confidence 7777765 2332211 0224667
Q ss_pred EecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcc
Q 040297 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 572 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 651 (773)
+++++|.+. .++..+..+.++..|.+++|++. ..+..++.+++++.|++++|.++...+ +..+.+++.|++++|.+
T Consensus 214 l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccc
Confidence 777777544 45666777777777777777776 346667777777777777777774433 67777777777777777
Q ss_pred cccCCCC
Q 040297 652 SGKIPDR 658 (773)
Q Consensus 652 ~~~~p~~ 658 (773)
+...|..
T Consensus 290 ~~~~~~~ 296 (394)
T COG4886 290 SNALPLI 296 (394)
T ss_pred cccchhh
Confidence 7666653
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.6e-11 Score=117.33 Aligned_cols=62 Identities=35% Similarity=0.451 Sum_probs=40.5
Q ss_pred cCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
..++.|+++|||+|.|+ .+.+...-.|.++.|++++|.+... +.+..+++|+.|||++|.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 33456777777777777 5566666677777777777777632 23556666666666666554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.2e-10 Score=126.48 Aligned_cols=179 Identities=36% Similarity=0.519 Sum_probs=81.8
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCC-CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
+.++.|++.+|.++ .++..... .+ +|++|++++|.+. .+|..++.+++|+.|++++|+++ .+|.... ..+.|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 34444444444444 33333221 21 4444444444444 23333444555555555555544 4443321 1444444
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
|++++|++....+ .......|+++.+++|.+. ..+..+..++++..+.+.+|++. ..+..++.+++++.|++++|.+
T Consensus 191 L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccccCch-hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence 5555554443221 1122333555555555322 23334455555555555555554 2244455555566666666655
Q ss_pred CCCccccccCCCCCcEEEccCCCCCCCCCC
Q 040297 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
+.... +....+++.|++++|.+....+.
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccc--ccccCccCEEeccCccccccchh
Confidence 53222 55555566666666555544443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=5.6e-11 Score=116.66 Aligned_cols=141 Identities=24% Similarity=0.190 Sum_probs=72.9
Q ss_pred hcCCCCCCEEECCCCCCccccch---hHhhcCCCCCEEEccCCcCccCC-------------ccCccCCCCcCEEEccCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPN---WLVENNTNLETLLLANNSLFGSF-------------RMPIHSYQKLAILDVSKN 230 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~Ls~n 230 (773)
+..+++|++++||.|-+....+. .++..+..|++|.|.+|.+.-.- .....+-++|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 44445555566665555433222 22345566666666666542110 111234466778888877
Q ss_pred cCccCCc---hhHhhCCCCCcEEEccCCccCcc----CchhhhCCCCCcEEEeecccCCCccchhH---hhcCCCccEEE
Q 040297 231 FFQGHIP---VEIGTYLPGLMDLNLSRNAFNGS----IPSSFADMKMLERLDISYNQLTGEIPERM---ATGCFLLEILA 300 (773)
Q Consensus 231 ~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~l~~L~~L~ 300 (773)
++...-. ...++..+.|+.+.++.|.|... +..+|..+++|++|||..|-++..-...+ ...+++|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 7752211 12334456777777777776522 22346677777777777776652221111 12233445555
Q ss_pred cccCcCC
Q 040297 301 LSNNNLQ 307 (773)
Q Consensus 301 L~~n~l~ 307 (773)
+++|.+.
T Consensus 248 l~dcll~ 254 (382)
T KOG1909|consen 248 LGDCLLE 254 (382)
T ss_pred ccccccc
Confidence 5555444
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=3.9e-11 Score=117.72 Aligned_cols=176 Identities=21% Similarity=0.225 Sum_probs=87.5
Q ss_pred cCCCCCcEEEcccccCCcc----ccccccCCCCCCeeeCcCCcC---CCCcch-------hhcCCCCCcEEEcccCcCCC
Q 040297 315 FNLTNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHL---SGRIPR-------WLGNLSALEDIRMSNNNLEG 380 (773)
Q Consensus 315 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l---~~~~~~-------~~~~l~~L~~L~L~~n~l~~ 380 (773)
..+..++.+++++|.+... +...+.+.+.|+..++++-.. ...+|. ++..+++|+.++||+|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3456677777777766422 223344555666666554211 111222 22334455555555555542
Q ss_pred Ccccc----ccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccc----
Q 040297 381 PIPIE----FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGS---- 452 (773)
Q Consensus 381 ~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~---- 452 (773)
..+.. +..+..|+.|.|.+|.+.-.-.... -..|..|. .......-+.|++++..+|++...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELA---------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHH---------HHhccCCCcceEEEEeeccccccccHHH
Confidence 22222 2234455555555543321000000 00011100 011122346678888888877642
Q ss_pred cchhhhcCCCCcEEEccCcccccc----CcccccCCCCCCEEEccCCcCCCc
Q 040297 453 IPNWINILPQLSSLLLGNNYIEGE----IPVQLCELKEVRLIDLSHNNLSGY 500 (773)
Q Consensus 453 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~ 500 (773)
+...|...+.|+.+.+..|.|... +...+..+++|++|||.+|-++..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 233456677888888888877522 234567778888888888877643
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7.9e-11 Score=118.76 Aligned_cols=211 Identities=21% Similarity=0.165 Sum_probs=114.8
Q ss_pred CCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCc--cCccCCCCcCEEEccCCcCccCCchhHhhCCCC
Q 040297 169 HQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFR--MPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG 246 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 246 (773)
++.+|+.+.|.++.............|++++.|||++|-+....+ .....+|+|+.|+++.|++........-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 445566666666555422111334556666677776665543222 223456666677777666643222222223566
Q ss_pred CcEEEccCCccCccCc-hhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcC-cccccCCCCCcEEE
Q 040297 247 LMDLNLSRNAFNGSIP-SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI-FSKKFNLTNLMRLQ 324 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 324 (773)
|+.|.|+.|.++.... .....+|+|+.|+|..|... .+...-..-+..|+.|+|++|++.... ....+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7777777776653221 22345667777777766321 111111122455677777777665422 12345667777777
Q ss_pred cccccCCcc-cccc-----ccCCCCCCeeeCcCCcCCCCcc--hhhcCCCCCcEEEcccCcCCCC
Q 040297 325 LDGNNFTGE-ISDS-----LSNCRLLAGLYLSDNHLSGRIP--RWLGNLSALEDIRMSNNNLEGP 381 (773)
Q Consensus 325 L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~ 381 (773)
++.+.+... .|+. ...+++|++|++..|++.. .+ ..+..+++|+.|.+..|.+..+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 777776543 2222 2446778888888887752 22 2344556777777777777643
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.2e-11 Score=120.03 Aligned_cols=163 Identities=24% Similarity=0.214 Sum_probs=96.4
Q ss_pred hcCCCCCEEEccCCcCccCCc-cCccCCCCcCEEEccCCcCccCCc-hhHhhCCCCCcEEEccCCccCccCch-hhhCCC
Q 040297 193 ENNTNLETLLLANNSLFGSFR-MPIHSYQKLAILDVSKNFFQGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMK 269 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~ 269 (773)
.++.+|++..|.++....... .....|++++.|||+.|-+....+ ..+...+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356678888888776643221 245567888888888886652222 23445578888888888876532211 112456
Q ss_pred CCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccc-cccccCCCCCCeee
Q 040297 270 MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEI-SDSLSNCRLLAGLY 348 (773)
Q Consensus 270 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 348 (773)
+|+.|.++.|.++..--.++...+++|+.|+++.|............+..|++|||++|++.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77777887777764333444455777777777777533222233344566777777776664221 12344556666666
Q ss_pred CcCCcCC
Q 040297 349 LSDNHLS 355 (773)
Q Consensus 349 L~~n~l~ 355 (773)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 6665554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=5.8e-11 Score=113.58 Aligned_cols=130 Identities=27% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCee
Q 040297 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 347 (773)
...|+++||++|.|+ .+.+.+- -.+.++.|++++|.+..+ +.++.+++|+.||+++|.++ .+..+-..+.+.++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 355777777777776 6665553 367777777777777643 23566777777777777766 333333456667777
Q ss_pred eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCc-cccccCCCCCcEEEccCCCCCC
Q 040297 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI-PIEFCQLDYLTILDLSNNAIFG 404 (773)
Q Consensus 348 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 404 (773)
.+++|.+... ..++.+-+|..||+++|++.... ...++++|.|+.+.+.+|.+.+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777776532 34556667777777777765321 2345666666666666666653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=6e-10 Score=103.04 Aligned_cols=108 Identities=29% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 219 YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
..++++|+|++|.|+ .+. .+...+.+|+.|++++|.++.. +.+..+++|++|++++|.++ .++..+...+++|+.
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 334555555555554 332 2322345666666666666632 23556667777777777766 554444334666666
Q ss_pred EEcccCcCCCcC-cccccCCCCCcEEEcccccCC
Q 040297 299 LALSNNNLQGHI-FSKKFNLTNLMRLQLDGNNFT 331 (773)
Q Consensus 299 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 331 (773)
|++++|++.... -..+..+++|+.|++.+|.++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666665421 123344555555555555554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=2.1e-09 Score=99.49 Aligned_cols=124 Identities=26% Similarity=0.311 Sum_probs=38.3
Q ss_pred CCcEEEcccCcCCCCcccccc-CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCC
Q 040297 367 ALEDIRMSNNNLEGPIPIEFC-QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS 445 (773)
Q Consensus 367 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 445 (773)
++++|+|.+|.++.+ +.+. .+.+|+.|++++|.++. ++....++.|+.|++++|+|+...+.....+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 344444444444421 1222 23444455555554442 2222234455555555555554433222346677777777
Q ss_pred CCcccccc-chhhhcCCCCcEEEccCccccccC---cccccCCCCCCEEEcc
Q 040297 446 YNRFHGSI-PNWINILPQLSSLLLGNNYIEGEI---PVQLCELKEVRLIDLS 493 (773)
Q Consensus 446 ~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~ 493 (773)
+|+|.+.. -..+..+++|++|+|.+|+++... ...+..+|+|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77776421 234566777777777777776331 1235567777777643
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=1.5e-09 Score=82.36 Aligned_cols=59 Identities=44% Similarity=0.596 Sum_probs=28.6
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcccc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+|+.|++++|+++...+..|..+++|++|++++|.++...|+.|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555553333444445555555555555544444445555555555555444
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.9e-09 Score=81.76 Aligned_cols=61 Identities=39% Similarity=0.568 Sum_probs=57.7
Q ss_pred CCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 651 (773)
++|++|++++|+++...++.|.++++|++||+++|+++...|..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999987778999999999999999999999999999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.9e-10 Score=121.04 Aligned_cols=226 Identities=26% Similarity=0.257 Sum_probs=126.1
Q ss_pred hcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeE
Q 040297 362 LGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVT 441 (773)
Q Consensus 362 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 441 (773)
+..+.+|+.|++.+|.+.... ..+..+++|+.|++++|.|+.. ...-.++.|+.|++++|.++... .+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDIS--GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhcc--CCccchhhhc
Confidence 344445555555555544221 1134455555555555555422 11222333555555555554332 2333566777
Q ss_pred EeCCCCccccccc-hhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCC
Q 040297 442 LDLSYNRFHGSIP-NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPP 520 (773)
Q Consensus 442 L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~ 520 (773)
+++++|++...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..-+..
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~---------------- 227 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN---------------- 227 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc----------------
Confidence 7777777664333 1 45667777777777777522 23344444555566666664211100
Q ss_pred CccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccc--cccEEecccCcCcccCChhhhccCCCCeEeC
Q 040297 521 TSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILT--SMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598 (773)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 598 (773)
.+. .|+.+++++|++. .++..+..+..+..|++
T Consensus 228 --------------------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 228 --------------------------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL 262 (414)
T ss_pred --------------------------------------------cchhHHHHHHhcccCccc-cccccccccccccccch
Confidence 011 2677888888887 45466677788888888
Q ss_pred CCCcCCCCCccccccCccCCeeeCccccCcc---cCCcc-cccCCCCCEEEccCCcccccCCC
Q 040297 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHG---KIPSQ-LTVLNTLAVFKVAYNNLSGKIPD 657 (773)
Q Consensus 599 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~---~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 657 (773)
++|++...- .+...+.+..+..+.|.+.. ..... ......+....+.+|......+.
T Consensus 263 ~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 263 SSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred hhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 888887332 35566777778888887662 22221 45667778888888887766653
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=6.2e-09 Score=120.64 Aligned_cols=107 Identities=30% Similarity=0.354 Sum_probs=53.9
Q ss_pred CCCCCEEEccCCc--CccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCc
Q 040297 195 NTNLETLLLANNS--LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 272 (773)
Q Consensus 195 l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 272 (773)
++.|++|-+..|. +.......|..++.|++|||++|.--+.+|..++. +-+|++|+++++.+. .+|..+++++.|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 4455555555553 32222233445555555555555433455555554 445555555555555 4555555555555
Q ss_pred EEEeecccCCCccchhHhhcCCCccEEEcccC
Q 040297 273 RLDISYNQLTGEIPERMATGCFLLEILALSNN 304 (773)
Q Consensus 273 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 304 (773)
+|++..+.-...+ ..+...+.+|++|.+...
T Consensus 622 ~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccc-cchhhhcccccEEEeecc
Confidence 5555555433222 222233555555555443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-09 Score=118.33 Aligned_cols=241 Identities=25% Similarity=0.230 Sum_probs=147.5
Q ss_pred CCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEe
Q 040297 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLD 443 (773)
Q Consensus 364 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 443 (773)
.+..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.......-.+++|++|++++|.|+...+ +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 44556666677776653 3344677788888888888887544433446777777777777766543 34455577777
Q ss_pred CCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCc
Q 040297 444 LSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTS 522 (773)
Q Consensus 444 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 522 (773)
+++|.|... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.......
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~------------------ 205 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD------------------ 205 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH------------------
Confidence 777777632 234456777777777777764433 2 456667777777777664211100
Q ss_pred cccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccC--CCCeEeCCC
Q 040297 523 IWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLT--RIHALNLSH 600 (773)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~ 600 (773)
.+..+..+++..|.++-..+ +..+. .|+.+++++
T Consensus 206 ------------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 206 ------------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred ------------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence 01234445777777763222 22223 378888888
Q ss_pred CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccccc---CCCC-CcccccCCcCcccCCCC
Q 040297 601 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGK---IPDR-VAQFSTFEEDSYEGNPF 675 (773)
Q Consensus 601 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~---~p~~-~~~~~~l~~~~l~~Np~ 675 (773)
|.+. ..+..+..+..++.||+++|++...- .+.....+..+....|.+... .+.. .....++....+.+||.
T Consensus 242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 242 NRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred Cccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 8888 45566778888888888888876432 344555666677777766522 1110 23344555566666653
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.9e-10 Score=107.40 Aligned_cols=179 Identities=21% Similarity=0.165 Sum_probs=105.0
Q ss_pred CCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCccccc
Q 040297 41 NLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLF 120 (773)
Q Consensus 41 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~ 120 (773)
+|++||||...++...+...+..|.+|+.|.+.++++.+.|.. .+++-.+|+.|+++ .++-++.......+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnls-------m~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLS-------MCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccc-------cccccchhHHHHHHH
Confidence 5899999988887665667788889999999999999887776 78888999999988 666555433333467
Q ss_pred CCCCCcEEecccccccccccCCCCCC--ccccEEEccCCCCC---CCcChhhcCCCCCCEEECCCCCCccc-cchhHhhc
Q 040297 121 NLSKLKTFDGEIWAETESHYNSVTPK--FQLTSISLSGYIDG---GTFPKFLYHQHDLKNADLSHLNLSGN-FPNWLVEN 194 (773)
Q Consensus 121 ~l~~L~~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~L~~~~l~~~-~~~~~~~~ 194 (773)
+|+.|..|++++.............+ .++..|+++|+... ..+......|++|..|||+.+..-.. .... +-.
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHh
Confidence 77777777777443222212211111 16677777765321 11122233455666666665432211 1112 234
Q ss_pred CCCCCEEEccCCcCccCCccC---ccCCCCcCEEEccCC
Q 040297 195 NTNLETLLLANNSLFGSFRMP---IHSYQKLAILDVSKN 230 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~n 230 (773)
++.|++|.++.|. +++|.. +...|.|.+||+.++
T Consensus 337 f~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 5556666665553 233332 234455555555543
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=6e-08 Score=112.56 Aligned_cols=203 Identities=21% Similarity=0.198 Sum_probs=132.0
Q ss_pred cCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCc--CccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCC
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNF--FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 271 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 271 (773)
+....+...+-+|.+... +.. ..+++|++|-+.+|. +. .++..+|..+|.|++|||++|.--+.+|..++++-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 345677777777766332 222 234579999998886 44 7788888889999999999887777899999999999
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCC--ccccccccCCCCCCeeeC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT--GEISDSLSNCRLLAGLYL 349 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L 349 (773)
++|++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+...... ...-..+..+.+|+.+..
T Consensus 598 ryL~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999999998 89988865 889999999988766555666666899999988765422 112223344445554444
Q ss_pred cCCcCCCCcchhhcCCCCCc----EEEcccCcCCCCccccccCCCCCcEEEccCCCCCC
Q 040297 350 SDNHLSGRIPRWLGNLSALE----DIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFG 404 (773)
Q Consensus 350 ~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 404 (773)
..... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 32222 0111122222222 2222222222 234456677777788777777653
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.3e-08 Score=97.90 Aligned_cols=178 Identities=21% Similarity=0.160 Sum_probs=91.1
Q ss_pred CCCEEEccCCcCccCC-ccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCc-cCcc-CchhhhCCCCCcE
Q 040297 197 NLETLLLANNSLFGSF-RMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNA-FNGS-IPSSFADMKMLER 273 (773)
Q Consensus 197 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~ 273 (773)
.|++|||++..|+... ..-+..|.+|+.|.+.++++.+.+...+.. -.+|+.|+|+.+. ++.. ..--+.+|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4666666655543211 112345566666666666665555555444 3466666666543 2211 1112456666666
Q ss_pred EEeecccCCCccchhHh-hcCCCccEEEcccCcCC---CcCcccccCCCCCcEEEcccccC-CccccccccCCCCCCeee
Q 040297 274 LDISYNQLTGEIPERMA-TGCFLLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNNF-TGEISDSLSNCRLLAGLY 348 (773)
Q Consensus 274 L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~ 348 (773)
|+++.+.+.......+. .--++|+.|+++++.-. ..+..-...+++|..|||++|.. +......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 66666655433222211 11245666666654311 11111123567777777776543 322334456667777777
Q ss_pred CcCCcCCCCcch---hhcCCCCCcEEEcccCc
Q 040297 349 LSDNHLSGRIPR---WLGNLSALEDIRMSNNN 377 (773)
Q Consensus 349 L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~ 377 (773)
++.|.. .+|. .+...++|.+|++.++-
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 776653 3343 34556777777776653
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=1.2e-08 Score=109.15 Aligned_cols=109 Identities=28% Similarity=0.371 Sum_probs=84.9
Q ss_pred ccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCcc-ccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
.++.++.|||++|+++... .+..+..|+.|||++|.++ .+|. ....+. |+.|.+++|.++.. ..+.+|.+|+-
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence 3678899999999998433 7889999999999999999 5554 233444 99999999998743 35688999999
Q ss_pred EEccCCcccccCCC-CCcccccCCcCcccCCCCCCCC
Q 040297 644 FKVAYNNLSGKIPD-RVAQFSTFEEDSYEGNPFLCGW 679 (773)
Q Consensus 644 L~ls~N~l~~~~p~-~~~~~~~l~~~~l~~Np~lC~~ 679 (773)
||+++|-|++.-.- .+..+..|..+.++|||.-|..
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999988763221 1234567788899999998853
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=3.1e-08 Score=106.15 Aligned_cols=126 Identities=29% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
.|.+.+.++|.+. .+..++.-++.|+.|||++|+++ .+. ....++.|++|||++|.+..+.--....+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4555556666655 34445555566666666666665 333 223466666666666666543322222333 666666
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCCCCcc-hhhcCCCCCcEEEcccCcC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP-RWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 378 (773)
++|.++.. ..+.++++|+.||+++|-+.+.-. ..++.+..|+.|.|.+|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66665522 234556666666666665553211 1234455566666666654
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=8.3e-08 Score=81.67 Aligned_cols=59 Identities=22% Similarity=0.445 Sum_probs=31.8
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.++.|+|++|+|+ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||.-+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 4445555555555 45555555555555555555555 44455555555555555555544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=3.6e-07 Score=88.11 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=112.0
Q ss_pred CCcccccCCCCCCCCEEeCCCCCCccccCc-hhh-cCCCCCCEEeCCCCCCCCC-ccchhhhcCCCCcEEECCCcccccc
Q 040297 4 GSKVLQSIGSLPSLKTLYLSYTNFTGTVVN-QEL-HNFTNLEELILDKSDLHVS-QLLSSIASFTSLKYLSMQDSVFKGA 80 (773)
Q Consensus 4 ~~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~-~~~-~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~ 80 (773)
+|..+-.++....+..|.+.++.|. .+-. ..| ..+++++.|||.+|.++.= ++...+.+++.|++|+++.|++...
T Consensus 34 ~g~s~~~v~s~ra~ellvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 34 AGLSYLGVSSLRALELLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred cccceeeeccccchhhheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 3444555555566666777666665 2211 123 3567888888888887742 2445567788888888888887755
Q ss_pred cChhhh-cCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCC
Q 040297 81 LHGQDF-RKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYID 159 (773)
Q Consensus 81 i~~~~~-~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 159 (773)
|.. . ..+.+|+.|-|. + ..+.-......+.++++++.++.+.. +++.+.+..+-.
T Consensus 113 I~~--lp~p~~nl~~lVLN-------g-T~L~w~~~~s~l~~lP~vtelHmS~N--------------~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 113 IKS--LPLPLKNLRVLVLN-------G-TGLSWTQSTSSLDDLPKVTELHMSDN--------------SLRQLNLDDNCI 168 (418)
T ss_pred ccc--CcccccceEEEEEc-------C-CCCChhhhhhhhhcchhhhhhhhccc--------------hhhhhccccccc
Confidence 442 2 345677777664 3 33332223334555665555544411 122222222111
Q ss_pred CCCcChhhcCCCCCCEEECCCCCCcccc-chhHhhcCCCCCEEEccCCcCccCCc-cCccCCCCcCEEEccCCcCccCCc
Q 040297 160 GGTFPKFLYHQHDLKNADLSHLNLSGNF-PNWLVENNTNLETLLLANNSLFGSFR-MPIHSYQKLAILDVSKNFFQGHIP 237 (773)
Q Consensus 160 ~~~~~~~l~~~~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~ 237 (773)
.... +.+.+++...|...--. -..+..-.|++..+.+..|.+..... ..+..++.+..|+|+.|++...-.
T Consensus 169 e~~s-------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas 241 (418)
T KOG2982|consen 169 EDWS-------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS 241 (418)
T ss_pred cccc-------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH
Confidence 1100 11222222222111000 00011234666777777766643322 234445555666777776653333
Q ss_pred hhHhhCCCCCcEEEccCCccC
Q 040297 238 VEIGTYLPGLMDLNLSRNAFN 258 (773)
Q Consensus 238 ~~~~~~l~~L~~L~L~~n~l~ 258 (773)
......+++|..|.++++.+.
T Consensus 242 vD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 242 VDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHHHcCCchhheeeccCCccc
Confidence 333344667777777766654
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=1.2e-06 Score=83.47 Aligned_cols=143 Identities=24% Similarity=0.202 Sum_probs=78.4
Q ss_pred hhhcCCCCCCEEECCCCCCccccchh---HhhcCCCCCEEEccCCcCccCCc-------------cCccCCCCcCEEEcc
Q 040297 165 KFLYHQHDLKNADLSHLNLSGNFPNW---LVENNTNLETLLLANNSLFGSFR-------------MPIHSYQKLAILDVS 228 (773)
Q Consensus 165 ~~l~~~~~L~~L~L~~~~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~Ls 228 (773)
..+.+|++|+.++|+.|.+....|+. +++.-+.|++|.+++|.+.-... .....-|.|++.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 45667788888888888877666543 23556778888888886521111 011234667777777
Q ss_pred CCcCccCCchhH----hhCCCCCcEEEccCCccCccCc-----hhhhCCCCCcEEEeecccCCCccch---hHhhcCCCc
Q 040297 229 KNFFQGHIPVEI----GTYLPGLMDLNLSRNAFNGSIP-----SSFADMKMLERLDISYNQLTGEIPE---RMATGCFLL 296 (773)
Q Consensus 229 ~n~l~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~p-----~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L 296 (773)
.|++. ..+... +..-..|+++.+..|.|...-. ..+..+.+|+.||+..|.++-.-.. ......+.|
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 77765 333221 1111367777777776653211 1234456677777777766521111 111223345
Q ss_pred cEEEcccCcCCC
Q 040297 297 EILALSNNNLQG 308 (773)
Q Consensus 297 ~~L~L~~n~l~~ 308 (773)
+.|.+..|-++.
T Consensus 245 rEL~lnDClls~ 256 (388)
T COG5238 245 RELRLNDCLLSN 256 (388)
T ss_pred hhccccchhhcc
Confidence 556665555543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=6.3e-07 Score=76.41 Aligned_cols=84 Identities=26% Similarity=0.446 Sum_probs=43.5
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEE
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 299 (773)
..|+..+|++|.+. .+|..+...+|.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..++. +.++..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence 34444555555555 445554444455555555555555 34445555555555555555555 44544443 4444444
Q ss_pred EcccCcCC
Q 040297 300 ALSNNNLQ 307 (773)
Q Consensus 300 ~L~~n~l~ 307 (773)
+..+|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 44444443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=4.7e-06 Score=79.50 Aligned_cols=88 Identities=27% Similarity=0.294 Sum_probs=41.1
Q ss_pred CCCCcEEEeecccCCCccchhH----hhcCCCccEEEcccCcCCCc-----CcccccCCCCCcEEEcccccCCcc----c
Q 040297 268 MKMLERLDISYNQLTGEIPERM----ATGCFLLEILALSNNNLQGH-----IFSKKFNLTNLMRLQLDGNNFTGE----I 334 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~----~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~ 334 (773)
-|.|++.....|++. ..+... +..-..|+.+.+..|.|.-. ..-.++.+.+|+.||+.+|-++.. +
T Consensus 156 kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 345555555555554 222211 11123455555555554321 011223455666666666655421 2
Q ss_pred cccccCCCCCCeeeCcCCcCCC
Q 040297 335 SDSLSNCRLLAGLYLSDNHLSG 356 (773)
Q Consensus 335 ~~~l~~l~~L~~L~L~~n~l~~ 356 (773)
..++..++.|+.|.+..|-++.
T Consensus 235 a~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHhcccchhhhccccchhhcc
Confidence 2334444556666666665554
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=1.2e-06 Score=88.79 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCCEEeCCCCCCccccCchh-hcCCCCCCEEeCCCCCCCCCccchh-hhcCCCCcEEECCCcc-cccccChhhhcCCCC
Q 040297 15 PSLKTLYLSYTNFTGTVVNQE-LHNFTNLEELILDKSDLHVSQLLSS-IASFTSLKYLSMQDSV-FKGALHGQDFRKFKN 91 (773)
Q Consensus 15 ~~L~~L~Ls~n~l~~~i~~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~~L~l~~n~-~~~~i~~~~~~~l~~ 91 (773)
..|+.|.+.++.=.+.-+-.+ -.+++++++|++.++.......-.. -..+++|++|++..|. ++...-......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 368888998886443322223 4678999999998886322111122 3458999999999863 443222223456899
Q ss_pred CcEEeCcc
Q 040297 92 LEHLDMGW 99 (773)
Q Consensus 92 L~~L~Ls~ 99 (773)
|++|+++|
T Consensus 218 L~~lNlSw 225 (483)
T KOG4341|consen 218 LKYLNLSW 225 (483)
T ss_pred HHHhhhcc
Confidence 99999984
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=6.2e-06 Score=57.01 Aligned_cols=36 Identities=39% Similarity=0.671 Sum_probs=15.3
Q ss_pred CCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 592 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 592 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1.1e-05 Score=78.13 Aligned_cols=205 Identities=18% Similarity=0.115 Sum_probs=129.2
Q ss_pred CCCCCCEEECCCCCCcccc-chhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCC
Q 040297 169 HQHDLKNADLSHLNLSGNF-PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 247 (773)
.++.++.+||.+|.++.-- -..+.+++|.|+.|+++.|.+...+..--....+|++|-|.+..+...-...+...+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4677888999999887531 123457899999999999988655432213567889999988877644444555557888
Q ss_pred cEEEccCCccCcc--CchhhhC-CCCCcEEEeecccCCC-ccchhHhhcCCCccEEEcccCcCCCcCc-ccccCCCCCcE
Q 040297 248 MDLNLSRNAFNGS--IPSSFAD-MKMLERLDISYNQLTG-EIPERMATGCFLLEILALSNNNLQGHIF-SKKFNLTNLMR 322 (773)
Q Consensus 248 ~~L~L~~n~l~~~--~p~~~~~-l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 322 (773)
++|.++.|++... ..+.... -+.+++|.+..|...- .-...+..-++++..+.+..|.+..... ..+..++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 8888888854321 1111111 1245555554543210 0001122346778888888887765432 23345677778
Q ss_pred EEcccccCCcc-ccccccCCCCCCeeeCcCCcCCCCcch------hhcCCCCCcEEEc
Q 040297 323 LQLDGNNFTGE-ISDSLSNCRLLAGLYLSDNHLSGRIPR------WLGNLSALEDIRM 373 (773)
Q Consensus 323 L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L 373 (773)
|.|+.++|..- .-+++.+++.|..|.++++++...... .++.+++++.|+=
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 88988888632 225678889999999999987643321 3466778887753
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=1.7e-05 Score=54.87 Aligned_cols=38 Identities=32% Similarity=0.642 Sum_probs=32.7
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 605 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 605 (773)
++|++|++++|+|+ .+|..++++++|++|++++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 37899999999999 677789999999999999999983
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=5.8e-06 Score=93.79 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=94.0
Q ss_pred CCCCEEeCCCCCC-ccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCc
Q 040297 15 PSLKTLYLSYTNF-TGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLE 93 (773)
Q Consensus 15 ~~L~~L~Ls~n~l-~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~ 93 (773)
.+|++||+++... ....+..--..||+|++|.+++-.+..........++++|+.||+|++.++ .+ ..++++++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 4688888887632 222332223468888888888777765544555677888888888888887 33 3688888888
Q ss_pred EEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCC
Q 040297 94 HLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDL 173 (773)
Q Consensus 94 ~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 173 (773)
.|.+. + -.+........+.+|++|+.||.|........ ++ ....-++-..+++|
T Consensus 199 ~L~mr-------n-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--------~i----------i~qYlec~~~LpeL 252 (699)
T KOG3665|consen 199 VLSMR-------N-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--------KI----------IEQYLECGMVLPEL 252 (699)
T ss_pred HHhcc-------C-CCCCchhhHHHHhcccCCCeeeccccccccch--------HH----------HHHHHHhcccCccc
Confidence 88875 2 22222233345667777777777732211100 00 00011222345677
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEE
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLL 202 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~ 202 (773)
+.||.++.++...+-+.+...-++|+.+.
T Consensus 253 rfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 253 RFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred cEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 77777777776655555544445555443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=6.1e-05 Score=78.65 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=17.5
Q ss_pred CCCCeEeCCCCcCCCCCccccccCccCCeeeCccc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 625 (773)
++|++|++++|... ..|+.+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666654 3333332 46666666655
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.71 E-value=2e-06 Score=87.19 Aligned_cols=285 Identities=19% Similarity=0.111 Sum_probs=159.8
Q ss_pred cCCCCCCCCEEeCCCCC-CccccCchhh-cCCCCCCEEeCCCC-CCCCCccchhhhcCCCCcEEECCCcc-cccccChhh
Q 040297 10 SIGSLPSLKTLYLSYTN-FTGTVVNQEL-HNFTNLEELILDKS-DLHVSQLLSSIASFTSLKYLSMQDSV-FKGALHGQD 85 (773)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~-l~~~i~~~~~-~~l~~L~~L~Ls~n-~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~i~~~~ 85 (773)
.-.+++++++|++.++. ++ ...-.++ ..|++|++|+|..| .++...+..-...+++|++++++.+. +++.--..-
T Consensus 159 ~~~~CpnIehL~l~gc~~iT-d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKIT-DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HhhhCCchhhhhhhcceecc-HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 34567899999999885 33 2111122 46899999999884 34433222344568999999999984 444211123
Q ss_pred hcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccc-cccc-cccCCCCCCccccEEEccCCCCCCCc
Q 040297 86 FRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIW-AETE-SHYNSVTPKFQLTSISLSGYIDGGTF 163 (773)
Q Consensus 86 ~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 163 (773)
+..+..++.+.+. +|-......-...=..+..+..+++... ..++ ..+..-..-..++.+..+++...+..
T Consensus 238 ~rG~~~l~~~~~k-------GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 238 QRGCKELEKLSLK-------GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred hccchhhhhhhhc-------ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 4566777777655 3322221110000011112222221100 0000 00011111226788888887654432
Q ss_pred C--hhhcCCCCCCEEECCCCC-CccccchhHhhcCCCCCEEEccCCcCccC--CccCccCCCCcCEEEccCCcCccCCc-
Q 040297 164 P--KFLYHQHDLKNADLSHLN-LSGNFPNWLVENNTNLETLLLANNSLFGS--FRMPIHSYQKLAILDVSKNFFQGHIP- 237 (773)
Q Consensus 164 ~--~~l~~~~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~- 237 (773)
+ .--.++++|+.+.++.++ |++.-...+..+++.|+.+++..+..... +...-.+++.|+++.++++.......
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 2 223467899999999886 44333334446788999999988754221 22223468899999999886431110
Q ss_pred ---hhHhhCCCCCcEEEccCCccC-ccCchhhhCCCCCcEEEeecccCCCcc-chhHhhcCCCccEEEcc
Q 040297 238 ---VEIGTYLPGLMDLNLSRNAFN-GSIPSSFADMKMLERLDISYNQLTGEI-PERMATGCFLLEILALS 302 (773)
Q Consensus 238 ---~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~ 302 (773)
.........++.+.|+++... ...-..+..+++|+.+++-.++-...- ...+...+++++...+.
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 111123568899999998754 233345778899999999887632122 22333457777765543
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.68 E-value=8e-05 Score=66.44 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=37.4
Q ss_pred HhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCC
Q 040297 191 LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 270 (773)
Q Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 270 (773)
.|.++++|+.+.+.. .+.......|..+++|+.+++..+ +. .++...+..+++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 344455555555543 233333344445545555555443 33 34444444444455555543 222233334444555
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
|+.+++..+ +. .++...+..+ .++.+.+
T Consensus 83 l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 83 LKNIDIPSN-IT-EIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp ECEEEETTT--B-EEHTTTTTT--T--EEE-
T ss_pred ccccccCcc-cc-EEchhhhcCC-CceEEEE
Confidence 555555433 33 3444444333 4444443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=7.6e-05 Score=68.56 Aligned_cols=85 Identities=24% Similarity=0.242 Sum_probs=45.2
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcC-cccccCCCCCcE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI-FSKKFNLTNLMR 322 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 322 (773)
..+...+||++|.+.. -+.|..+++|..|.+.+|+|+ .|...+...+++|+.|.+.+|.+.... -..+..+|.|++
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 4456666777766642 223556666666666666666 555555544555566666555554211 112234445555
Q ss_pred EEcccccCC
Q 040297 323 LQLDGNNFT 331 (773)
Q Consensus 323 L~L~~n~l~ 331 (773)
|.+-+|.++
T Consensus 118 Ltll~Npv~ 126 (233)
T KOG1644|consen 118 LTLLGNPVE 126 (233)
T ss_pred eeecCCchh
Confidence 555554443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.59 E-value=0.00013 Score=65.05 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=18.1
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
+++|+.+.+.. .+......+|.++++|+.+++..+ +. .++...+..+.+++.+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF 65 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence 34444444432 233333334444444444444432 33 344444443434444444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=4.6e-05 Score=86.60 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=83.4
Q ss_pred cccEEEccCCCCC-CCcChhhc-CCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEE
Q 040297 148 QLTSISLSGYIDG-GTFPKFLY-HQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAIL 225 (773)
Q Consensus 148 ~L~~L~l~~~~~~-~~~~~~l~-~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 225 (773)
+|++|+++|.... ..+|..++ .+|.|++|.+.+-.+...--..++.++|+|+.||+|+..++.. ..++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 7777777765432 22444444 3577777777776664332233456677777777777776543 456677777777
Q ss_pred EccCCcCcc-CCchhHhhCCCCCcEEEccCCccCccC--c----hhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 226 DVSKNFFQG-HIPVEIGTYLPGLMDLNLSRNAFNGSI--P----SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 226 ~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
.+.+-.+.. ..-..+|. +++|+.||+|........ . +.-..+|+|+.||.|++.+.+.+-+.+...-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 776655542 12234554 677777777765543211 1 112235667777776666654444444433344443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00031 Score=73.51 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=25.1
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCC
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 255 (773)
+.++++|++++|.+... | . -.++|++|.+++|.--..+|..+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 55666666666655332 2 1 11245666665532211334322 134555555555
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00024 Score=65.36 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=59.4
Q ss_pred ceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC-cccccCCCCCCEEEc
Q 040297 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI-PVQLCELKEVRLIDL 492 (773)
Q Consensus 414 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 492 (773)
....+|+++|.+... ..|..++.|.+|.+++|+|+.+.|..-..+++|+.|.|.+|.|.... -..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445566666665433 34667788888888888888776766666788889999888876321 134667888888888
Q ss_pred cCCcCC
Q 040297 493 SHNNLS 498 (773)
Q Consensus 493 ~~N~l~ 498 (773)
-+|++.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 888775
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00033 Score=67.42 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCCcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCC--CCCCCccchhhhcCCCCcEEECCCccccc-
Q 040297 3 DGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKS--DLHVSQLLSSIASFTSLKYLSMQDSVFKG- 79 (773)
Q Consensus 3 ~~~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~L~~L~l~~n~~~~- 79 (773)
.+|.+..-.-.+..|+.|++.+..++ ++. .|=.|++|++|++|.| .+.+. ++.-...+++|++|++++|+++.
T Consensus 31 ~~g~~~gl~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 31 GAGKLGGLTDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred cCCCcccccccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCccccc
Confidence 34566666777788888888888777 443 5667889999999999 45444 55556667999999999998873
Q ss_pred -ccChhhhcCCCCCcEEeCc
Q 040297 80 -ALHGQDFRKFKNLEHLDMG 98 (773)
Q Consensus 80 -~i~~~~~~~l~~L~~L~Ls 98 (773)
+++ ....+.+|..|++.
T Consensus 107 stl~--pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 107 STLR--PLKELENLKSLDLF 124 (260)
T ss_pred cccc--hhhhhcchhhhhcc
Confidence 222 35667777788876
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.89 E-value=0.00027 Score=79.21 Aligned_cols=112 Identities=25% Similarity=0.180 Sum_probs=48.4
Q ss_pred cCCCCCEEEccCCcCccC--CccCccCCCCcCEEEccCC-cCccCCc---hhHhhCCCCCcEEEccCCc-cCccCchhhh
Q 040297 194 NNTNLETLLLANNSLFGS--FRMPIHSYQKLAILDVSKN-FFQGHIP---VEIGTYLPGLMDLNLSRNA-FNGSIPSSFA 266 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~ 266 (773)
.++.|+.|.+..+.-... .......++.|+.|+++++ ......+ ......+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 345555555555422111 1122334555555555542 1110111 1222334556666666555 3333222332
Q ss_pred C-CCCCcEEEeeccc-CCCccchhHhhcCCCccEEEcccCc
Q 040297 267 D-MKMLERLDISYNQ-LTGEIPERMATGCFLLEILALSNNN 305 (773)
Q Consensus 267 ~-l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 305 (773)
. +++|++|.+.++. +++.--..+...++.|++|+++++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2 5556665555444 3433333344445555555555444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00089 Score=64.54 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=66.5
Q ss_pred ccCCCCCCCCEEeCCCC--CCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccC--hh
Q 040297 9 QSIGSLPSLKTLYLSYT--NFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALH--GQ 84 (773)
Q Consensus 9 ~~~~~l~~L~~L~Ls~n--~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~--~~ 84 (773)
..|..|++|+.|++|.| .+++.++. ....+++|++|+||+|+++..+--..+..+.+|..||+.+|.-+.--. ..
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 45677889999999999 66655553 456779999999999999854334557778899999999997664111 13
Q ss_pred hhcCCCCCcEEeC
Q 040297 85 DFRKFKNLEHLDM 97 (773)
Q Consensus 85 ~~~~l~~L~~L~L 97 (773)
.|.-+++|++||-
T Consensus 138 vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 138 VFLLLPSLKYLDG 150 (260)
T ss_pred HHHHhhhhccccc
Confidence 5677888888883
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00085 Score=75.13 Aligned_cols=175 Identities=23% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCCCCCEEECCCCCCcccc-chhHhhcCCCCCEEEccCC-cCccCCc----cCccCCCCcCEEEccCCc-CccCCchhHh
Q 040297 169 HQHDLKNADLSHLNLSGNF-PNWLVENNTNLETLLLANN-SLFGSFR----MPIHSYQKLAILDVSKNF-FQGHIPVEIG 241 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 241 (773)
.++.|+.+.+..+.-.... -..+...++.|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4677888877776433221 1233457888888888863 2111111 223456788888888887 5544444555
Q ss_pred hCCCCCcEEEccCCc-cCccCc-hhhhCCCCCcEEEeecccCC-Cc-cchhHhhcCCCccEEEcccCcCCCcCcccccCC
Q 040297 242 TYLPGLMDLNLSRNA-FNGSIP-SSFADMKMLERLDISYNQLT-GE-IPERMATGCFLLEILALSNNNLQGHIFSKKFNL 317 (773)
Q Consensus 242 ~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~Ls~n~l~-~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 317 (773)
..+++|++|.+.+|. ++...- .....++.|++|+++.+... +. +... ...+++++.|.+....- +
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCC----------C
Confidence 557889999877776 443222 23456788999999887643 11 2222 34477766655433221 3
Q ss_pred CCCcEEEcccccCC---ccccccccCCCCCCeeeCcCCcC
Q 040297 318 TNLMRLQLDGNNFT---GEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 318 ~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
+.++.+.+...... .........++.++.+.+..+..
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 33444444332221 12222345566666666666653
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.0013 Score=63.62 Aligned_cols=79 Identities=29% Similarity=0.291 Sum_probs=34.2
Q ss_pred CCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCc-ccccCCCCCcEEEcccccCCccccc-----cccC
Q 040297 267 DMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIF-SKKFNLTNLMRLQLDGNNFTGEISD-----SLSN 340 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~ 340 (773)
.|+.|++|.|+-|+|+ .+.. +..|.+|++|+|..|.|..... ..+.++++|+.|.|..|.-.+..+. .+.-
T Consensus 39 kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 3444444444444444 2221 1224444444444444433211 1234555666666665554443322 2334
Q ss_pred CCCCCeee
Q 040297 341 CRLLAGLY 348 (773)
Q Consensus 341 l~~L~~L~ 348 (773)
+++|++||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55666554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.26 E-value=0.0059 Score=34.97 Aligned_cols=11 Identities=64% Similarity=0.706 Sum_probs=4.2
Q ss_pred CeEeCCCCcCC
Q 040297 594 HALNLSHNNLT 604 (773)
Q Consensus 594 ~~L~Ls~N~l~ 604 (773)
++|||++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0018 Score=62.63 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccCh-hhhcCCCCC
Q 040297 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHG-QDFRKFKNL 92 (773)
Q Consensus 14 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~-~~~~~l~~L 92 (773)
+.+.+.|+.-++.++ .|. -...++.|++|.||-|.++.. ..+..|++|+.|.|..|.|.+ +.. .-+.++++|
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchh
Confidence 556778888888887 554 456788889999988888764 567788888888888888773 221 235678888
Q ss_pred cEEeCcchhhccCCCcccccccC----cccccCCCCCcEEecc
Q 040297 93 EHLDMGWVQLILSNNHFFQIPIS----LEPLFNLSKLKTFDGE 131 (773)
Q Consensus 93 ~~L~Ls~~~l~l~~n~~~~~~~~----~~~l~~l~~L~~l~~~ 131 (773)
+.|+|. . |--.+..+ ..-+.-|++|+.||.-
T Consensus 91 r~LWL~-------E-NPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 91 RTLWLD-------E-NPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhHhhc-------c-CCcccccchhHHHHHHHHcccchhccCc
Confidence 888876 4 22222221 1225556666666654
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0062 Score=34.86 Aligned_cols=20 Identities=50% Similarity=0.637 Sum_probs=11.3
Q ss_pred cCCeeeCccccCcccCCcccc
Q 040297 616 QIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 616 ~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+|++|||++|+++ .+|+.|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 4554444
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.15 E-value=0.0046 Score=58.27 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=72.1
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
...+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..++++..+..+++.+|..+ ..|.++..++.+++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 46778999999987 55667888889999999999998 88999999999999999999887 77889999999999999
Q ss_pred cCCccc
Q 040297 647 AYNNLS 652 (773)
Q Consensus 647 s~N~l~ 652 (773)
-+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 988864
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.17 E-value=0.09 Score=27.82 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=5.6
Q ss_pred CCCEEeCCCCCCc
Q 040297 16 SLKTLYLSYTNFT 28 (773)
Q Consensus 16 ~L~~L~Ls~n~l~ 28 (773)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.38 E-value=0.18 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=14.5
Q ss_pred CCCCCEEeCCCCCCccccCchhh
Q 040297 14 LPSLKTLYLSYTNFTGTVVNQEL 36 (773)
Q Consensus 14 l~~L~~L~Ls~n~l~~~i~~~~~ 36 (773)
+++|++|+|++|.|+ .+|++.|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777776 6665444
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.38 E-value=0.18 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=14.5
Q ss_pred CCCCCEEeCCCCCCccccCchhh
Q 040297 14 LPSLKTLYLSYTNFTGTVVNQEL 36 (773)
Q Consensus 14 l~~L~~L~Ls~n~l~~~i~~~~~ 36 (773)
+++|++|+|++|.|+ .+|++.|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777776 6665444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.23 E-value=0.14 Score=27.06 Aligned_cols=13 Identities=54% Similarity=0.670 Sum_probs=4.6
Q ss_pred CCcEEEeecccCC
Q 040297 270 MLERLDISYNQLT 282 (773)
Q Consensus 270 ~L~~L~Ls~n~l~ 282 (773)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.38 E-value=0.012 Score=55.51 Aligned_cols=92 Identities=26% Similarity=0.342 Sum_probs=77.3
Q ss_pred cCC-hhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCc
Q 040297 582 EIP-TQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVA 660 (773)
Q Consensus 582 ~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 660 (773)
++| .++......+.||++.|++. -.-..|+-++.|+.||++.|++. ..|..+..+..+..+++.+|.++. .|..++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCcccc
Confidence 444 56777889999999999997 45667889999999999999997 778888888889999999998885 455578
Q ss_pred ccccCCcCcccCCCCC
Q 040297 661 QFSTFEEDSYEGNPFL 676 (773)
Q Consensus 661 ~~~~l~~~~l~~Np~l 676 (773)
+.+..+..+.-+||+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8999999999998865
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.25 E-value=0.0065 Score=66.34 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=16.6
Q ss_pred CCCcEEEcccCcCCCCcc----ccccCCCCCcEEEccCCCC
Q 040297 366 SALEDIRMSNNNLEGPIP----IEFCQLDYLTILDLSNNAI 402 (773)
Q Consensus 366 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l 402 (773)
..++.++++.|.+..... ..+..++.++.+.++.|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 344555555555543322 2223344455555555544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.80 E-value=0.28 Score=29.30 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=13.1
Q ss_pred CCCcEEEeecccCCCccchhHh
Q 040297 269 KMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
++|++|+|++|+++ .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6665554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.80 E-value=0.28 Score=29.30 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=13.1
Q ss_pred CCCcEEEeecccCCCccchhHh
Q 040297 269 KMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
++|++|+|++|+++ .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6665554
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=89.25 E-value=0.12 Score=65.88 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=27.7
Q ss_pred EccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 645 KVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 645 ~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
||++|+|+...+..|..+.+|+.+++.+|||.|+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 45666666666666666677777778889999999774
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.98 E-value=0.009 Score=65.25 Aligned_cols=113 Identities=27% Similarity=0.285 Sum_probs=63.5
Q ss_pred CCCCcEEEccCCccCc----cCchh----hhCCCCCcEEEeecccCCCccch---hHhhcCCC-ccEEEcccCcCCCcC-
Q 040297 244 LPGLMDLNLSRNAFNG----SIPSS----FADMKMLERLDISYNQLTGEIPE---RMATGCFL-LEILALSNNNLQGHI- 310 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~----~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~-L~~L~L~~n~l~~~~- 310 (773)
.+.++.++++.|.+.. .++.. +....++++|+++++.++...-. ......+. +..+++..|.+....
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 4455555555555421 11222 23456677777777766521111 11112223 555777777776431
Q ss_pred ---cccccCC-CCCcEEEcccccCCcc----ccccccCCCCCCeeeCcCCcCCC
Q 040297 311 ---FSKKFNL-TNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSG 356 (773)
Q Consensus 311 ---~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 356 (773)
...+..+ ..+++++++.|.++.. +...+..++.++.+.++.|.+..
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1223334 5678888888888744 33445667788999999888864
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.83 E-value=0.26 Score=46.04 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred cccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhh-cCCCCcEEECCCcc-cccccCh
Q 040297 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIA-SFTSLKYLSMQDSV-FKGALHG 83 (773)
Q Consensus 6 ~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~n~-~~~~i~~ 83 (773)
++|.....=.-++.+|-++..|.+ +--+.+.+++.++.|.+.++.--...--..++ -.++|+.|++++|. |++.--
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL- 169 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL- 169 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-
Confidence 444443333446677777776652 21134556666666666555432210011122 24677777777763 442211
Q ss_pred hhhcCCCCCcEEeCc
Q 040297 84 QDFRKFKNLEHLDMG 98 (773)
Q Consensus 84 ~~~~~l~~L~~L~Ls 98 (773)
..+.++++|+.|.+.
T Consensus 170 ~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHHHhhhhHHHHhc
Confidence 255666777766665
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.95 E-value=0.47 Score=27.65 Aligned_cols=15 Identities=53% Similarity=0.676 Sum_probs=6.3
Q ss_pred CCeeEEeCCCCcccc
Q 040297 437 PYLVTLDLSYNRFHG 451 (773)
Q Consensus 437 ~~L~~L~Ls~n~l~~ 451 (773)
++|++|++++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.32 E-value=0.21 Score=46.64 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCC-chhHhhCCCCCcEEEccCCc-cCccCchhhhCCCCCcEEE
Q 040297 198 LETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHI-PVEIGTYLPGLMDLNLSRNA-FNGSIPSSFADMKMLERLD 275 (773)
Q Consensus 198 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 275 (773)
++.++-++..|....-..+..++.++.|.+.+|.--+.. -..+....++|+.|++++|. |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555554443344455555555555555321111 11122234677777777663 5544445566667777776
Q ss_pred eecc
Q 040297 276 ISYN 279 (773)
Q Consensus 276 Ls~n 279 (773)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.31 E-value=3.8 Score=24.47 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=8.5
Q ss_pred CCCCEEeCCCCCCc
Q 040297 15 PSLKTLYLSYTNFT 28 (773)
Q Consensus 15 ~~L~~L~Ls~n~l~ 28 (773)
++|++|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666655
No 88
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=69.75 E-value=2.9 Score=27.78 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=11.1
Q ss_pred eeeeehhhHHHHHHHHHHhhchhhhhh
Q 040297 715 ITFTVSYGIVILGIIGVLYVNPYWRRR 741 (773)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (773)
++++++.-+++++++..+++..|||++
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEecc
Confidence 344444433333333333333455543
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.32 E-value=3.8 Score=24.40 Aligned_cols=13 Identities=46% Similarity=0.698 Sum_probs=6.8
Q ss_pred CCCeEeCCCCcCC
Q 040297 592 RIHALNLSHNNLT 604 (773)
Q Consensus 592 ~L~~L~Ls~N~l~ 604 (773)
+|++|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555555
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.26 E-value=38 Score=36.39 Aligned_cols=60 Identities=22% Similarity=0.157 Sum_probs=31.3
Q ss_pred eeEEeCCCCccccccch---hhhcCCCCcEEEccCcccccc----CcccccCCCCCCEEEccCCcCC
Q 040297 439 LVTLDLSYNRFHGSIPN---WINILPQLSSLLLGNNYIEGE----IPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 439 L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
+..+.++.|+....... ....-+.+..|++++|..... +|.....-..++.+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 55666666666532211 223346677777777766422 2333434445555555555443
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.89 E-value=5.9 Score=24.08 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=8.3
Q ss_pred ccCCeeeCccccCc
Q 040297 615 KQIESLDLSYNLLH 628 (773)
Q Consensus 615 ~~L~~LdLs~N~l~ 628 (773)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.26 E-value=12 Score=40.91 Aligned_cols=39 Identities=31% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCCCeeEEeCCCC--ccccccchhhhc--CCCCcEEEccCccccc
Q 040297 435 DSPYLVTLDLSYN--RFHGSIPNWINI--LPQLSSLLLGNNYIEG 475 (773)
Q Consensus 435 ~~~~L~~L~Ls~n--~l~~~~~~~~~~--l~~L~~L~L~~n~l~~ 475 (773)
..|+|+.|+|++| .+.. ..++.. ...|++|.+.+|++..
T Consensus 242 ~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3466677777776 3331 112222 3446777777777654
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=40.76 E-value=12 Score=33.14 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHhhchhhhhh
Q 040297 721 YGIVILGIIGVLYVNPYWRRR 741 (773)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~ 741 (773)
+++++++++++++++|+||.+
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHheeEEeecccC
Confidence 334444455555555666553
No 94
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=38.43 E-value=17 Score=32.51 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=9.1
Q ss_pred hhhhhhhhhccc-ccee
Q 040297 756 GALLLHIITGKR-SLFY 771 (773)
Q Consensus 756 ~~~~~~~~~~~~-~~~~ 771 (773)
...+|+.+-+|. ...|
T Consensus 98 ~~~~w~~l~Gk~~~~~y 114 (154)
T PF04478_consen 98 LTKWWYSLLGKKISDKY 114 (154)
T ss_pred HHHHHHHHhCCcccccc
Confidence 456666665555 3554
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.71 E-value=98 Score=33.46 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=42.9
Q ss_pred CCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhh---cCCCCCcEEEcccCcCCCCccccccC---CC
Q 040297 317 LTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL---GNLSALEDIRMSNNNLEGPIPIEFCQ---LD 390 (773)
Q Consensus 317 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~---l~ 390 (773)
-+.+++++++.|.+....|..+..-. --+.++.|..+...-..+ ..-..+.+++++.|.....+|....- -.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 35677888888888766665543211 114455555442211100 11135677777777776666654322 12
Q ss_pred CCcEEEccCCC
Q 040297 391 YLTILDLSNNA 401 (773)
Q Consensus 391 ~L~~L~L~~n~ 401 (773)
.++.++.+.-.
T Consensus 242 vl~~ld~s~tg 252 (553)
T KOG4242|consen 242 VLFKLDRSTTG 252 (553)
T ss_pred hhhcccccccc
Confidence 34445554433
No 96
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=35.89 E-value=14 Score=25.98 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q 040297 673 NPFLCGWPLSK 683 (773)
Q Consensus 673 Np~lC~~~l~~ 683 (773)
|||.|+|.+.+
T Consensus 1 NP~~CdC~l~~ 11 (51)
T smart00082 1 NPFICDCELRW 11 (51)
T ss_pred CCccCcCCchH
Confidence 89999998753
No 97
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=35.58 E-value=18 Score=30.95 Aligned_cols=30 Identities=27% Similarity=0.168 Sum_probs=19.0
Q ss_pred ehhhHHHHHHHHHHhhchhhhhhHHhHhHh
Q 040297 719 VSYGIVILGIIGVLYVNPYWRRRWFYLVEM 748 (773)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (773)
+++.+++++..+..++.||.|++++..-|+
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~~~~ 136 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPLQDM 136 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCchhhc
Confidence 344444455556667778888887765554
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.87 E-value=31 Score=20.35 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.1
Q ss_pred CCCcEEECCCc
Q 040297 65 TSLKYLSMQDS 75 (773)
Q Consensus 65 ~~L~~L~l~~n 75 (773)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.66 E-value=30 Score=45.75 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=24.2
Q ss_pred ecccCcCcccCChhhhccCCCCeEeCCCCcCC
Q 040297 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT 604 (773)
Q Consensus 573 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 604 (773)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888555666777888888888888665
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.97 E-value=37 Score=37.32 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=7.1
Q ss_pred CCeeeCcCCcCC
Q 040297 344 LAGLYLSDNHLS 355 (773)
Q Consensus 344 L~~L~L~~n~l~ 355 (773)
|++|-+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 555666666554
No 101
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=28.67 E-value=38 Score=27.96 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=6.6
Q ss_pred eeehhhHHHHHHHHHHh
Q 040297 717 FTVSYGIVILGIIGVLY 733 (773)
Q Consensus 717 ~~~~~~~~~~~~~~~~~ 733 (773)
++++.++++.+++++++
T Consensus 71 i~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 71 ISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEeehhhHHHHHHHHHh
Confidence 33443333333344443
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.50 E-value=33 Score=29.71 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=2.9
Q ss_pred hhhHHHHH
Q 040297 720 SYGIVILG 727 (773)
Q Consensus 720 ~~~~~~~~ 727 (773)
|+++++++
T Consensus 72 gv~aGvIg 79 (122)
T PF01102_consen 72 GVMAGVIG 79 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 103
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.12 E-value=1.6e+02 Score=19.74 Aligned_cols=9 Identities=22% Similarity=0.874 Sum_probs=4.2
Q ss_pred hhchhhhhh
Q 040297 733 YVNPYWRRR 741 (773)
Q Consensus 733 ~~~~~~~~~ 741 (773)
+.+|+|..+
T Consensus 28 ~iYRKw~aR 36 (43)
T PF08114_consen 28 FIYRKWQAR 36 (43)
T ss_pred HHHHHHHHH
Confidence 344555443
Done!