Query 040297
Match_columns 773
No_of_seqs 626 out of 5293
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.4E-77 1.9E-81 700.1 45.4 661 7-689 69-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.1E-69 1.7E-73 632.4 39.1 640 15-678 50-719 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-61 9.5E-66 562.0 47.7 580 5-681 17-627 (680)
4 3j0a_A TOLL-like receptor 5; m 100.0 6.6E-57 2.2E-61 534.9 38.8 537 19-682 8-566 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-55 2.1E-59 508.6 48.5 560 17-676 6-597 (680)
6 3t6q_A CD180 antigen; protein- 100.0 3.3E-55 1.1E-59 504.0 43.8 534 18-681 15-565 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.7E-54 5.8E-59 498.0 41.7 528 5-656 25-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-54 8.9E-59 496.5 39.6 539 17-683 13-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-53 7.2E-58 504.8 35.7 559 5-689 17-592 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-52 5.2E-57 481.7 36.3 520 5-656 24-562 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 1.9E-47 6.4E-52 436.4 38.8 510 17-681 9-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 8.9E-48 3E-52 439.0 34.6 461 148-677 29-508 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-47 1.2E-51 431.7 35.8 421 167-680 70-514 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-45 4.3E-50 427.2 41.8 551 5-682 18-586 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-46 1.4E-50 423.1 34.2 386 163-656 115-514 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 1E-46 3.4E-51 438.7 29.5 380 230-680 435-870 (876)
17 4eco_A Uncharacterized protein 100.0 7E-48 2.4E-52 442.2 18.4 458 148-677 82-601 (636)
18 4eco_A Uncharacterized protein 100.0 6.4E-48 2.2E-52 442.6 17.3 429 171-675 81-578 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-46 9.5E-51 421.2 26.9 456 150-682 3-487 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 6.9E-45 2.4E-49 409.8 26.3 461 18-655 3-484 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 5E-44 1.7E-48 416.1 28.9 500 40-652 323-864 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-42 3.7E-47 395.1 28.0 458 149-682 33-516 (562)
23 3v47_A TOLL-like receptor 5B a 100.0 2.6E-41 8.9E-46 374.1 30.9 381 223-680 13-412 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-41 1.3E-45 382.3 26.3 459 17-656 33-514 (562)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-39 5.7E-44 375.8 39.3 520 5-653 44-581 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 3.2E-40 1.1E-44 365.4 28.2 386 174-657 13-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.9E-39 2E-43 351.8 25.3 402 147-677 11-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.6E-38 5.6E-43 348.3 24.0 409 122-658 10-435 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-37 1.4E-41 337.6 23.7 376 148-659 19-394 (457)
30 1o6v_A Internalin A; bacterial 100.0 9.8E-36 3.3E-40 329.6 34.4 347 194-654 44-390 (466)
31 1o6v_A Internalin A; bacterial 100.0 1.6E-35 5.4E-40 327.9 35.4 347 169-630 44-390 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 9.5E-37 3.2E-41 339.4 24.3 323 272-680 14-337 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 1.1E-36 3.8E-41 338.8 24.7 322 247-630 13-335 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-34 5.1E-39 317.2 28.7 350 192-676 38-387 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 1.1E-34 3.7E-39 313.7 27.2 333 269-679 45-377 (390)
36 3oja_B Anopheles plasmodium-re 100.0 4.1E-34 1.4E-38 326.2 26.9 335 244-680 50-384 (597)
37 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-34 8.2E-39 300.3 18.7 258 343-685 51-312 (313)
38 3o6n_A APL1; leucine-rich repe 100.0 6.1E-33 2.1E-37 300.0 27.8 312 219-631 44-355 (390)
39 4fmz_A Internalin; leucine ric 100.0 2.2E-32 7.6E-37 290.9 30.3 304 244-652 43-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 5.4E-32 1.9E-36 287.9 31.6 308 215-628 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.8E-33 1.3E-37 318.3 23.9 313 268-680 50-362 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 2.4E-34 8.1E-39 318.9 4.4 362 220-653 3-412 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 8E-34 2.7E-38 314.6 4.3 313 171-502 3-358 (461)
44 1xku_A Decorin; proteoglycan, 100.0 2.4E-30 8.1E-35 272.9 27.8 288 319-673 32-329 (330)
45 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-32 1.4E-36 283.3 14.0 181 318-499 50-235 (313)
46 1xku_A Decorin; proteoglycan, 100.0 2.4E-30 8.2E-35 272.9 26.3 290 271-650 33-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4.2E-35 275.2 23.7 287 319-673 34-330 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-30 4.7E-35 274.9 23.7 289 271-650 35-331 (332)
49 3ogk_B Coronatine-insensitive 100.0 7.9E-31 2.7E-35 300.3 4.2 202 194-398 110-326 (592)
50 3ogk_B Coronatine-insensitive 100.0 2.9E-30 9.8E-35 295.6 7.7 411 188-654 65-528 (592)
51 3zyj_A Leucine-rich repeat-con 100.0 3.1E-28 1.1E-32 267.2 22.3 232 391-682 65-298 (440)
52 2z80_A TOLL-like receptor 2, v 100.0 9.7E-29 3.3E-33 263.1 15.9 279 318-680 31-318 (353)
53 3zyi_A Leucine-rich repeat-con 100.0 6.7E-28 2.3E-32 265.6 22.8 253 344-682 56-309 (452)
54 2z80_A TOLL-like receptor 2, v 100.0 3.2E-28 1.1E-32 259.1 19.1 283 268-632 30-318 (353)
55 2z66_A Variable lymphocyte rec 100.0 5E-28 1.7E-32 252.2 20.0 254 345-681 10-266 (306)
56 2z66_A Variable lymphocyte rec 99.9 7.1E-28 2.4E-32 251.1 15.6 114 567-680 175-291 (306)
57 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-27 1.6E-31 242.2 18.1 229 393-681 14-243 (285)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-26 4.1E-31 239.1 20.1 226 272-501 14-241 (285)
59 2p1m_B Transport inhibitor res 99.9 7E-29 2.4E-33 284.3 1.1 396 193-649 102-541 (594)
60 3zyi_A Leucine-rich repeat-con 99.9 4.4E-26 1.5E-30 251.0 23.1 247 319-652 55-303 (452)
61 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-28 1.1E-32 254.7 5.5 263 324-657 16-281 (317)
62 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.1E-31 243.4 17.2 222 365-649 80-311 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-27 4.7E-32 249.8 8.3 268 271-634 12-282 (317)
64 4fcg_A Uncharacterized protein 99.9 5.4E-26 1.8E-30 238.4 19.0 235 244-498 80-314 (328)
65 3oja_A Leucine-rich immune mol 99.9 6.3E-27 2.1E-31 259.0 11.8 246 342-681 34-287 (487)
66 3zyj_A Leucine-rich repeat-con 99.9 1.8E-25 6E-30 245.3 22.5 250 221-500 44-294 (440)
67 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-25 1E-29 250.2 24.9 267 246-638 41-307 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 5.1E-25 1.8E-29 248.3 25.9 248 318-663 61-308 (622)
69 1wwl_A Monocyte differentiatio 99.9 9.4E-27 3.2E-31 242.9 10.8 248 193-450 40-309 (312)
70 2p1m_B Transport inhibitor res 99.9 1.1E-27 3.7E-32 274.4 0.5 409 187-653 57-520 (594)
71 1wwl_A Monocyte differentiatio 99.9 9.5E-27 3.2E-31 242.9 7.5 248 216-474 39-309 (312)
72 2z62_A TOLL-like receptor 4, v 99.9 4.2E-25 1.4E-29 226.3 19.3 209 413-680 28-241 (276)
73 2o6q_A Variable lymphocyte rec 99.9 2.4E-24 8.2E-29 219.7 19.9 185 438-680 38-222 (270)
74 3oja_A Leucine-rich immune mol 99.9 2.2E-25 7.7E-30 246.6 12.6 235 318-647 34-270 (487)
75 1p9a_G Platelet glycoprotein I 99.9 5.1E-24 1.7E-28 219.0 19.1 208 386-681 6-213 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 1.5E-23 5.2E-28 214.7 18.7 222 224-450 11-237 (276)
77 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 206.5 21.7 206 391-656 17-222 (270)
78 3rfs_A Internalin B, repeat mo 99.9 4.3E-23 1.5E-27 210.5 15.5 224 344-661 21-244 (272)
79 1p9a_G Platelet glycoprotein I 99.9 4.3E-22 1.5E-26 204.7 21.3 204 361-652 5-208 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.2E-27 207.1 15.7 228 318-639 19-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 1.9E-23 6.5E-28 222.7 8.3 129 322-450 2-151 (362)
82 3goz_A Leucine-rich repeat-con 99.9 2E-23 7E-28 222.5 8.1 201 299-499 3-239 (362)
83 3m19_A Variable lymphocyte rec 99.9 4.8E-22 1.6E-26 200.2 17.5 180 414-654 15-194 (251)
84 2ca6_A RAN GTPase-activating p 99.9 1.8E-23 6.1E-28 225.3 3.6 247 333-656 23-320 (386)
85 2ast_B S-phase kinase-associat 99.9 1.3E-22 4.4E-27 214.4 8.1 251 320-659 49-313 (336)
86 2ca6_A RAN GTPase-activating p 99.9 4E-23 1.4E-27 222.6 3.9 246 310-632 24-320 (386)
87 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.7E-26 196.2 13.0 201 413-674 31-237 (239)
88 4glp_A Monocyte differentiatio 99.9 1.3E-21 4.3E-26 203.9 13.3 227 172-403 65-307 (310)
89 2ast_B S-phase kinase-associat 99.9 3.2E-22 1.1E-26 211.3 8.6 256 294-637 47-315 (336)
90 3m19_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 191.3 18.4 111 568-678 84-194 (251)
91 1h6u_A Internalin H; cell adhe 99.9 3.3E-21 1.1E-25 200.1 15.6 208 347-653 24-231 (308)
92 4glp_A Monocyte differentiatio 99.9 3.1E-21 1.1E-25 200.9 14.6 226 220-450 64-307 (310)
93 2xwt_C Thyrotropin receptor; s 99.9 4.9E-21 1.7E-25 191.4 15.5 178 246-450 32-218 (239)
94 1h6u_A Internalin H; cell adhe 99.8 6.4E-20 2.2E-24 190.4 19.5 191 195-403 40-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 9.6E-20 3.3E-24 193.0 18.4 241 223-495 12-256 (350)
96 2v9t_B SLIT homolog 2 protein 99.8 3E-20 1E-24 182.6 12.5 116 567-682 56-171 (220)
97 3cvr_A Invasion plasmid antige 99.8 2E-20 6.9E-25 208.2 12.1 115 367-499 60-174 (571)
98 2xot_A Amphoterin-induced prot 99.8 2.6E-20 8.9E-25 198.2 10.8 181 440-681 21-207 (361)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-19 3.4E-24 178.8 14.0 115 567-681 57-171 (220)
100 4ay9_X Follicle-stimulating ho 99.8 2.3E-19 8E-24 190.0 16.8 201 174-380 12-216 (350)
101 2o6s_A Variable lymphocyte rec 99.8 3.7E-19 1.3E-23 173.5 14.9 160 438-662 29-188 (208)
102 3e6j_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 173.9 15.6 112 568-680 65-176 (229)
103 2o6s_A Variable lymphocyte rec 99.8 8.3E-19 2.8E-23 171.1 15.7 151 322-498 11-161 (208)
104 3cvr_A Invasion plasmid antige 99.8 9.1E-19 3.1E-23 194.9 15.6 134 343-498 60-193 (571)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-18 8.6E-23 168.8 14.6 156 440-656 14-170 (220)
106 2v9t_B SLIT homolog 2 protein 99.8 3.7E-18 1.3E-22 167.6 14.9 153 440-653 14-166 (220)
107 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 4.7E-22 171.2 16.6 151 433-653 64-214 (291)
108 3e6j_A Variable lymphocyte rec 99.7 1.8E-17 6.1E-22 163.9 15.6 155 440-656 22-176 (229)
109 1h6t_A Internalin B; cell adhe 99.7 3.2E-17 1.1E-21 168.5 15.7 169 194-378 44-212 (291)
110 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.9E-22 177.7 12.0 176 223-403 21-202 (361)
111 1m9s_A Internalin B; cell inva 99.7 4.3E-17 1.5E-21 183.6 17.3 121 369-498 24-144 (605)
112 1w8a_A SLIT protein; signaling 99.7 1.8E-17 6.2E-22 158.9 11.9 115 568-682 30-145 (192)
113 2wfh_A SLIT homolog 2 protein 99.7 1.5E-17 5.1E-22 159.4 10.9 115 567-682 31-145 (193)
114 1m9s_A Internalin B; cell inva 99.7 5.2E-17 1.8E-21 182.9 16.6 172 193-380 40-211 (605)
115 4ezg_A Putative uncharacterize 99.7 3.5E-17 1.2E-21 157.8 12.6 154 434-653 41-195 (197)
116 1xeu_A Internalin C; cellular 99.7 3E-17 1E-21 165.8 11.0 170 413-655 19-188 (263)
117 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.5E-24 203.0 -7.6 122 462-646 442-567 (567)
118 1w8a_A SLIT protein; signaling 99.7 2.6E-16 9E-21 150.8 15.8 112 567-680 54-166 (192)
119 3sb4_A Hypothetical leucine ri 99.7 2E-17 6.7E-22 173.6 7.3 101 389-491 225-327 (329)
120 4ezg_A Putative uncharacterize 99.7 2.9E-16 9.8E-21 151.4 13.8 150 245-403 44-194 (197)
121 1dce_A Protein (RAB geranylger 99.7 3.7E-18 1.3E-22 191.2 0.3 183 412-658 348-552 (567)
122 3sb4_A Hypothetical leucine ri 99.7 1.5E-16 5.3E-21 166.8 9.8 125 195-327 24-157 (329)
123 4b8c_D Glucose-repressible alc 99.7 4E-17 1.4E-21 188.7 5.7 187 366-634 173-360 (727)
124 1xeu_A Internalin C; cellular 99.7 2E-16 6.7E-21 159.8 10.0 167 296-500 21-187 (263)
125 4b8c_D Glucose-repressible alc 99.6 8.1E-17 2.8E-21 186.2 5.9 224 318-628 173-404 (727)
126 2o6r_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 143.4 12.1 114 567-680 28-141 (177)
127 4fdw_A Leucine rich hypothetic 99.6 1.1E-14 3.9E-19 155.7 19.0 266 195-498 112-383 (401)
128 2ell_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 140.6 11.5 87 567-653 71-161 (168)
129 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7E-20 141.4 10.6 138 435-633 22-164 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 138.1 9.2 81 567-647 64-148 (149)
131 3g39_A Variable lymphocyte rec 99.6 3E-15 1E-19 140.1 10.3 110 568-680 10-119 (170)
132 4fdw_A Leucine rich hypothetic 99.6 2.3E-14 8E-19 153.3 18.4 257 219-508 112-368 (401)
133 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.2E-19 139.1 14.0 87 567-653 54-140 (193)
134 2je0_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 136.7 9.2 129 436-624 16-149 (149)
135 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.2E-19 136.1 13.0 90 567-656 52-141 (177)
136 2r9u_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 136.7 10.5 108 570-680 15-122 (174)
137 4fs7_A Uncharacterized protein 99.6 1.4E-13 4.8E-18 148.0 20.5 335 27-418 59-393 (394)
138 4fs7_A Uncharacterized protein 99.5 6.2E-14 2.1E-18 150.8 17.1 244 211-493 62-305 (394)
139 1ds9_A Outer arm dynein; leuci 99.5 6.6E-16 2.3E-20 149.0 -4.7 150 433-645 14-180 (198)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.7E-18 129.8 10.9 83 568-652 65-153 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.5 9.3E-14 3.2E-18 131.0 9.0 134 433-629 15-154 (176)
142 1ds9_A Outer arm dynein; leuci 99.4 1.6E-15 5.6E-20 146.2 -5.2 153 457-674 14-183 (198)
143 3g39_A Variable lymphocyte rec 99.4 5.4E-13 1.9E-17 124.7 11.0 90 567-656 30-119 (170)
144 2ifg_A High affinity nerve gro 99.4 3.2E-13 1.1E-17 142.8 9.7 109 570-681 11-121 (347)
145 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 122.2 11.1 90 567-656 33-122 (174)
146 4gt6_A Cell surface protein; l 99.3 4.1E-11 1.4E-15 128.7 19.4 316 165-497 57-390 (394)
147 4gt6_A Cell surface protein; l 99.3 5.5E-11 1.9E-15 127.7 19.6 78 568-650 312-389 (394)
148 3un9_A NLR family member X1; l 99.3 3E-13 1E-17 143.2 -0.0 65 588-652 180-252 (372)
149 3un9_A NLR family member X1; l 99.2 6.5E-13 2.2E-17 140.7 -0.0 87 196-282 72-168 (372)
150 2ifg_A High affinity nerve gro 99.2 1.8E-11 6.2E-16 129.2 8.3 114 566-680 30-145 (347)
151 4h09_A Hypothetical leucine ri 99.1 6E-09 2.1E-13 111.2 21.1 289 167-494 42-342 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.8E-08 9.7E-13 105.9 22.8 70 567-638 286-355 (379)
153 2ra8_A Uncharacterized protein 98.8 1.5E-08 5E-13 106.2 10.2 156 148-307 108-292 (362)
154 2ra8_A Uncharacterized protein 98.7 9.7E-09 3.3E-13 107.5 6.1 83 412-496 251-341 (362)
155 3rw6_A Nuclear RNA export fact 98.4 3.8E-07 1.3E-11 90.3 6.5 64 567-632 170-237 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.6E-12 89.8 2.3 44 455-498 30-78 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 1E-07 3.5E-12 89.9 2.1 71 429-499 28-107 (185)
158 3rw6_A Nuclear RNA export fact 98.3 1.2E-07 4E-12 93.9 1.7 84 572-657 148-238 (267)
159 3rfe_A Platelet glycoprotein I 97.8 1.2E-05 4.2E-10 70.2 4.6 61 619-681 12-73 (130)
160 3e4g_A ATP synthase subunit S, 97.7 7.5E-06 2.6E-10 74.9 1.8 83 568-650 62-150 (176)
161 3e4g_A ATP synthase subunit S, 97.7 2.3E-05 7.8E-10 71.7 3.7 83 319-401 62-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00064 2.2E-08 63.4 3.9 69 431-499 35-112 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0016 5.3E-08 56.7 6.0 57 570-628 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0011 3.9E-08 61.6 3.7 65 168-233 38-111 (197)
165 2lz0_A Uncharacterized protein 47.1 23 0.0008 28.3 4.6 45 257-303 8-52 (100)
166 2lz0_A Uncharacterized protein 36.2 54 0.0018 26.1 5.2 13 337-349 15-27 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.4e-77 Score=700.07 Aligned_cols=661 Identities=30% Similarity=0.409 Sum_probs=560.5
Q ss_pred ccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccch--hhhcCCCCcEEECCCcccccccChh
Q 040297 7 VLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLS--SIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 7 l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
+|+++.++++|+.++++.+.+. .++ ..|+.+++|++|||++|.+.+. +|. .++++++|++|++++|.+.+.+|..
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 145 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred cChhHhccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence 8899999999999999999886 555 4899999999999999999886 787 8999999999999999999888874
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcc--cccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCC
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLE--PLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGT 162 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~--~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 162 (773)
.+.++++|++|+++ + +.+.+..+.. .+.++++|+.++++........ ......+|++|++++|.+.+.
T Consensus 146 ~~~~l~~L~~L~Ls-------~-n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 215 (768)
T 3rgz_A 146 GGLKLNSLEVLDLS-------A-NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215 (768)
T ss_dssp SCCCCTTCSEEECC-------S-SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCSC
T ss_pred HhccCCCCCEEECC-------C-CccCCcCChhhhhhccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCCC
Confidence 45899999999998 7 4555443322 1788999999999844332211 113344999999999999998
Q ss_pred cChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh
Q 040297 163 FPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242 (773)
Q Consensus 163 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 242 (773)
+|. +.++++|++|++++|.+++.+|..+ .++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..++.
T Consensus 216 ~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~ 291 (768)
T 3rgz_A 216 IPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291 (768)
T ss_dssp CCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCT
T ss_pred Ccc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHh
Confidence 887 9999999999999999998888775 89999999999999998877765 8899999999999999999998887
Q ss_pred CCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCC-CCc
Q 040297 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT-NLM 321 (773)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~ 321 (773)
.+++|++|++++|.+++.+|..|+++++|++|++++|.++|.+|...+..+++|++|++++|.+.+..|..+..++ +|+
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 6799999999999999999999999999999999999999899988677799999999999999988898888887 999
Q ss_pred EEEcccccCCccccccccC--CCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccC
Q 040297 322 RLQLDGNNFTGEISDSLSN--CRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399 (773)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 399 (773)
+|++++|++++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 9999999999988888776 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc
Q 040297 400 NAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478 (773)
Q Consensus 400 n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 478 (773)
|.+.+.+|..+. +++|+.|++++|.+++..|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 999998887665 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCC---------CCcccccccc-ccCCCCCCCCCC-----CC
Q 040297 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGP---------PTSIWCDRAS-VYGSPCLPTQSG-----PP 543 (773)
Q Consensus 479 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~-----~~ 543 (773)
..+..+++|+.|++++|+++|.+|..+.............. .....+.... ............ ..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 99999999999999999999999998876432111000000 0000000000 000000000000 00
Q ss_pred CCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCc
Q 040297 544 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623 (773)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 623 (773)
........+.... . .....+++|+.|||++|+++|.+|..++.+++|++|+|++|+++|.+|+.|+++++|+.||||
T Consensus 612 ~~~l~~~~~~g~~-~--~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 612 PCNITSRVYGGHT-S--PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp CSCTTSCEEEEEC-C--CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred ccccccceecccC-c--hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 0000000111100 0 011236789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCCCCCCCCC
Q 040297 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNG 689 (773)
Q Consensus 624 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~~~c~~~~ 689 (773)
+|+++|.+|+.+..+++|++||+++|+++|.||.. +++.++...+|.|||++||.|+. .|....
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999999999999985 89999999999999999999987 886543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-69 Score=632.37 Aligned_cols=640 Identities=26% Similarity=0.342 Sum_probs=539.3
Q ss_pred CCCCEEeCCCCCCccc---cCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccCh-hhhcCCC
Q 040297 15 PSLKTLYLSYTNFTGT---VVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHG-QDFRKFK 90 (773)
Q Consensus 15 ~~L~~L~Ls~n~l~~~---i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~-~~~~~l~ 90 (773)
.+++.|||+++.+.|. ++ .++.++++|+.++++.+.+.. +|..++.+++|++|||++|.++|.+|. ..+++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 4789999999999988 87 489999999999999887643 568999999999999999999988774 2689999
Q ss_pred CCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCC---CCCCccccEEEccCCCCCCCcChhh
Q 040297 91 NLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNS---VTPKFQLTSISLSGYIDGGTFPKFL 167 (773)
Q Consensus 91 ~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l 167 (773)
+|++|+++ + |.+.+..+...+.++++|++++++........... +....+|++|++++|.+.+..+.
T Consensus 127 ~L~~L~Ls-------~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-- 196 (768)
T 3rgz_A 127 GLKFLNVS-------S-NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-- 196 (768)
T ss_dssp TCCEEECC-------S-SEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--
T ss_pred CCCEEECc-------C-CccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--
Confidence 99999998 7 56666666655688999999999844332211111 22334899999999999887664
Q ss_pred cCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCC
Q 040297 168 YHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247 (773)
Q Consensus 168 ~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 247 (773)
.++++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. .+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCC
Confidence 7899999999999999988876 589999999999999999999999999999999999999999888765 47899
Q ss_pred cEEEccCCccCccCchhhhCC-CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCccc-ccCCCCCcEEEc
Q 040297 248 MDLNLSRNAFNGSIPSSFADM-KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSK-KFNLTNLMRLQL 325 (773)
Q Consensus 248 ~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L 325 (773)
++|++++|.+++.+|..+... ++|++|++++|.+++.+|..+. .+++|++|++++|.+.+.+|.. +..+++|++|++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 999999999999999988775 9999999999999988887765 5999999999999999777665 889999999999
Q ss_pred ccccCCccccccccCCC-CCCeeeCcCCcCCCCcchhhcC--CCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCC
Q 040297 326 DGNNFTGEISDSLSNCR-LLAGLYLSDNHLSGRIPRWLGN--LSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 402 (773)
++|++++.+|..+..++ +|+.|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 99999999999998887 9999999999999888888877 88999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccc
Q 040297 403 FGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481 (773)
Q Consensus 403 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 481 (773)
++.+|..+. +++|+.|++++|.+.+..|..+..+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 988887765 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEccCCcCCCcCcchhhccCcCc-cccCCCCCC-ccccccccccCCCCCCCCCCCCCCCcceEEEEecCccc
Q 040297 482 CELKEVRLIDLSHNNLSGYIPACLVYTSLGE-DYHEEGPPT-SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSY 559 (773)
Q Consensus 482 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (773)
..+++|++|++++|+++|.+|..+..++... +....+... .++...... .... ............+.......
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ---SGKI--AANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT---TTCB--CCSTTCSCEEEEEECCSCCT
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc---cchh--hhhccccccccccccccccc
Confidence 9999999999999999999999988765322 222221111 111000000 0000 00000011111121111100
Q ss_pred c---------------ccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcc
Q 040297 560 Y---------------YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624 (773)
Q Consensus 560 ~---------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 624 (773)
. .....++.+..++++.|.++|.+|..++.+++|++|+|++|+++|.+|..|+++++|+.|||++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 0 0011244566788899999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCC
Q 040297 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 678 (773)
Q Consensus 625 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~ 678 (773)
|+++|.+|+.++.+++|+.||+++|+++|.+|..++.++.++.+++++|+....
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 999999999999999999999999999999999999999999999999986543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-61 Score=562.02 Aligned_cols=580 Identities=21% Similarity=0.234 Sum_probs=480.0
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+. +++++|+|++|.++ .+++..|.++++|++|+|++|.+++. .|..++++++|++|++++|.++ .+|..
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 91 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS-QLSDK 91 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC-CCCTT
T ss_pred cccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC-ccChh
Confidence 45666664 68888888888888 56656788888888888888888876 6778888888888888888887 55654
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcC
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFP 164 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 164 (773)
.|+++++|++|+++ +| .+.. ++...+.+++ +|++|++++|.+.+..|
T Consensus 92 ~~~~l~~L~~L~L~-------~n-~l~~-~~~~~~~~l~------------------------~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 92 TFAFCTNLTELHLM-------SN-SIQK-IKNNPFVKQK------------------------NLITLDLSHNGLSSTKL 138 (680)
T ss_dssp TTTTCTTCSEEECC-------SS-CCCC-CCSCTTTTCT------------------------TCCEEECCSSCCSCCCC
T ss_pred hhccCCCCCEEECC-------CC-ccCc-cChhHccccC------------------------CCCEEECCCCcccccCc
Confidence 68888888888887 53 3322 2222333333 67777788888888888
Q ss_pred hhhcCCCCCCEEECCCCCCccccchhH-hhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh-
Q 040297 165 KFLYHQHDLKNADLSHLNLSGNFPNWL-VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT- 242 (773)
Q Consensus 165 ~~l~~~~~L~~L~L~~~~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~- 242 (773)
..+.++++|++|++++|.+++..+..+ +..+++|++|++++|.+.+..+..+..+++|+.|+++++.+.+.....+..
T Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 218 (680)
T 1ziw_A 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218 (680)
T ss_dssp CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH
T ss_pred hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH
Confidence 888999999999999999987666543 125689999999999999988888999999999999999876333222211
Q ss_pred -CCCCCcEEEccCCccCccCchhhhCCCC--CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCC
Q 040297 243 -YLPGLMDLNLSRNAFNGSIPSSFADMKM--LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN 319 (773)
Q Consensus 243 -~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 319 (773)
..++|++|++++|.+.+..|..|.+++. |++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++
T Consensus 219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 1478999999999999999999988865 999999999998 454444566999999999999999999999999999
Q ss_pred CcEEEcccccCCc-----ccc----ccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCc--cccccC
Q 040297 320 LMRLQLDGNNFTG-----EIS----DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI--PIEFCQ 388 (773)
Q Consensus 320 L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~ 388 (773)
|++|++++|...+ .+| ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.... ...+..
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 9999999876543 223 26788999999999999999988889999999999999999864322 223333
Q ss_pred --CCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccch-hhhcCCCCeeEEeCCCCccccccchhhhcCCCCc
Q 040297 389 --LDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLE-SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLS 464 (773)
Q Consensus 389 --l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 464 (773)
.++|+.|++++|.+.+..+..+. +++|+.|++++|.+.+.++ ..+.++++|++|++++|++.+..+..+..+++|+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 36899999999999988887665 8899999999999987554 7899999999999999999988888999999999
Q ss_pred EEEccCcccc--ccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCC
Q 040297 465 SLLLGNNYIE--GEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542 (773)
Q Consensus 465 ~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (773)
.|++++|.+. +..|..+..+++|+.|++++|++++..+..+..
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------------------------- 502 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----------------------------------- 502 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc-----------------------------------
Confidence 9999999987 567889999999999999999998766555543
Q ss_pred CCCCcceEEEEecCccccccccccccccEEecccCcCcccCC--------hhhhccCCCCeEeCCCCcCCCCCccccccC
Q 040297 543 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP--------TQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614 (773)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 614 (773)
+++|++|++++|++++..+ ..++.+++|++|+|++|+++...+..|+++
T Consensus 503 -----------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 503 -----------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp -----------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred -----------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 3589999999999986422 237899999999999999996555679999
Q ss_pred ccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCc-ccccCCcCcccCCCCCCCCCC
Q 040297 615 KQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVA-QFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 615 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|+.|||++|++++..+..|..+++|+.|++++|++++..|..++ .+++++.+++++|||.|+|+.
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999988888899999999999999999999887666 788999999999999999985
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-57 Score=534.94 Aligned_cols=537 Identities=19% Similarity=0.208 Sum_probs=318.5
Q ss_pred EEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCc
Q 040297 19 TLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMG 98 (773)
Q Consensus 19 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls 98 (773)
..|.++++++ .+|. ..++|++|||++|.++.. .|..|.++++|++|++++|...+.++...|.++++|++|+|+
T Consensus 8 ~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCC-CCCC----CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 4555555555 5552 345666666666666554 455566666666666666654445533355666666666655
Q ss_pred chhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcCh--hhcCCCCCCEE
Q 040297 99 WVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPK--FLYHQHDLKNA 176 (773)
Q Consensus 99 ~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L 176 (773)
+| .+.+..+ ..+.+++ +|++|++++|.+.+..|. ++.++++|++|
T Consensus 82 -------~N-~l~~~~p-~~~~~l~------------------------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 82 -------SS-KIYFLHP-DAFQGLF------------------------HLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp -------TC-CCCEECT-TSSCSCS------------------------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred -------CC-cCcccCH-hHccCCc------------------------ccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 32 1111000 1111111 222222223333332222 25555666666
Q ss_pred ECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCC--CCcCEEEccCCcCccCCchhHhhCCC------CCc
Q 040297 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSY--QKLAILDVSKNFFQGHIPVEIGTYLP------GLM 248 (773)
Q Consensus 177 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~ 248 (773)
++++|.+.+..+...++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+.. ++ .|+
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~ 207 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLE 207 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBS
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCcee
Confidence 6666666544433334556666666666666655555555444 55555555555555444433221 11 255
Q ss_pred EEEccCCccCccCchhhhCC---CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCC--CCCcEE
Q 040297 249 DLNLSRNAFNGSIPSSFADM---KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNL--TNLMRL 323 (773)
Q Consensus 249 ~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 323 (773)
+|++++|.+++..+..+... ..++.|+++.+.+... ...+.+.+.....+..+ ++|++|
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~----------------~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG----------------FGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS----------------SSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceeccccccccc----------------ccccccCCCChhhhhccccCCccEE
Confidence 55555555554444444322 3444444442211100 00122222222233332 456666
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence 66666666555555666666666666666666555556666666666666666666555556666666666666666665
Q ss_pred CCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC-cccc
Q 040297 404 GTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI-PVQL 481 (773)
Q Consensus 404 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~ 481 (773)
+..+..+. +++|+.|++++|.+++.. .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHH
T ss_pred ccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhh
Confidence 55554443 556666666666665432 2567777777777776 34432 456778888888877532 2234
Q ss_pred cCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccc
Q 040297 482 CELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYY 561 (773)
Q Consensus 482 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (773)
..+++|+.|++++|++++..+....
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------------------- 447 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTP------------------------------------------------------- 447 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSS-------------------------------------------------------
T ss_pred hcCCccceeeCCCCccccccccccc-------------------------------------------------------
Confidence 5778888888888887754322110
Q ss_pred cccccccccEEecccCcCc-----ccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 562 QGRILTSMSGIDLSCNKLT-----GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
..+++|+.|++++|.++ +..|..|..+++|++|+|++|++++..|..|.++++|+.|||++|++++.+|..+.
T Consensus 448 --~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 448 --SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp --CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred --ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 01347888888888886 34456788899999999999999999999999999999999999999988887776
Q ss_pred cCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 637 VLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 637 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|+.|++++|++++.+|..+ ..++.++++||||.|+|++.
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 899999999999999999754 57888899999999999764
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.1e-55 Score=508.55 Aligned_cols=560 Identities=21% Similarity=0.169 Sum_probs=468.1
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
-+.+|.++++++ .+|. .+. +++++|+|++|.+++. .+..|+++++|++|++++|.+++..|. .|+++++|++|+
T Consensus 6 ~~~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 79 (680)
T 1ziw_A 6 HEVADCSHLKLT-QVPD-DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLN 79 (680)
T ss_dssp SSEEECCSSCCS-SCCS-CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEE
T ss_pred CCeeECCCCCcc-cccc-ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEE
Confidence 368999999998 8884 454 7999999999999986 567899999999999999999976665 899999999999
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +| .+. .++...+.+++ +|++|++++|.+.+..|..+.++++|++|
T Consensus 80 L~-------~n-~l~-~l~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 80 LQ-------HN-ELS-QLSDKTFAFCT------------------------NLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp CC-------SS-CCC-CCCTTTTTTCT------------------------TCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CC-------CC-ccC-ccChhhhccCC------------------------CCCEEECCCCccCccChhHccccCCCCEE
Confidence 98 64 332 22222233333 67777778888877777889999999999
Q ss_pred ECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCcc--CCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccC
Q 040297 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIH--SYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254 (773)
Q Consensus 177 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 254 (773)
++++|.+++..|.. +.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+ ..+++|+.|++++
T Consensus 127 ~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 127 DLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNN 204 (680)
T ss_dssp ECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTT
T ss_pred ECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccc
Confidence 99999998776655 47899999999999999887776554 56899999999999985555444 4488999999999
Q ss_pred CccCccCchhh---hCCCCCcEEEeecccCCCccchhHhhcCC--CccEEEcccCcCCCcCcccccCCCCCcEEEccccc
Q 040297 255 NAFNGSIPSSF---ADMKMLERLDISYNQLTGEIPERMATGCF--LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN 329 (773)
Q Consensus 255 n~l~~~~p~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 329 (773)
+.+.+.....+ ...++|++|++++|.+++..|..+ ..+. +|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 98764333222 145899999999999985555544 3454 49999999999999888899999999999999999
Q ss_pred CCccccccccCCCCCCeeeCcCCcCCC-----Ccc----hhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCC
Q 040297 330 FTGEISDSLSNCRLLAGLYLSDNHLSG-----RIP----RWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400 (773)
Q Consensus 330 l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 400 (773)
+++..|..+..+++|+.|++++|...+ .+| ..|..+++|++|++++|.+.+..+..|.++++|+.|++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 999989999999999999999876553 222 26788999999999999999988888999999999999999
Q ss_pred CCCCCC--CCCCC---CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEEccCcccc
Q 040297 401 AIFGTL--PSCFS---PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLLLGNNYIE 474 (773)
Q Consensus 401 ~l~~~~--~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 474 (773)
.+.... ...+. .+.|+.|++++|++++..+..+..+++|++|++++|++.+.+| ..+..+++|++|++++|++.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 764322 22222 3689999999999999999999999999999999999987665 68899999999999999999
Q ss_pred ccCcccccCCCCCCEEEccCCcCC--CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEE
Q 040297 475 GEIPVQLCELKEVRLIDLSHNNLS--GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552 (773)
Q Consensus 475 ~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (773)
+..+..+..+++|+.|++++|.+. +.+|..+..
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~--------------------------------------------- 478 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP--------------------------------------------- 478 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT---------------------------------------------
T ss_pred eeChhhhhcCcccccchhccccccccccCCccccc---------------------------------------------
Confidence 888899999999999999999986 344544432
Q ss_pred EecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCc--------cccccCccCCeeeCcc
Q 040297 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP--------TTFSNLKQIESLDLSY 624 (773)
Q Consensus 553 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~LdLs~ 624 (773)
+++|+.|++++|++++..|..|..+++|++|+|++|.+++..+ ..|+++++|+.|+|++
T Consensus 479 -------------l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 479 -------------LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred -------------CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 4589999999999998878889999999999999999986522 3488999999999999
Q ss_pred ccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCC
Q 040297 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 676 (773)
Q Consensus 625 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~l 676 (773)
|+++...+..|..+++|+.|++++|++++..+..+..+++++.+++++|...
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 9999666667999999999999999999988888889999999999999653
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-55 Score=503.96 Aligned_cols=534 Identities=21% Similarity=0.201 Sum_probs=348.9
Q ss_pred CEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeC
Q 040297 18 KTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDM 97 (773)
Q Consensus 18 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L 97 (773)
++++.++..++ .+|. .+. +++++|+|++|.+++. .|..|+++++|++|++++|.+.+..|. .|+++++|++|++
T Consensus 15 ~~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L 88 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVL 88 (606)
T ss_dssp TEEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEEC
T ss_pred ceEECCCCCcc-cCcC-CCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChh-hccCccccCeeeC
Confidence 45666666666 5653 343 3567777777776654 456667777777777777766644443 5666666666666
Q ss_pred cchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEE
Q 040297 98 GWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNAD 177 (773)
Q Consensus 98 s~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 177 (773)
+ +| .+. +..|..+.++++|++|+
T Consensus 89 s-------~n-~l~-------------------------------------------------~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 89 T-------AN-PLI-------------------------------------------------FMAETALSGPKALKHLF 111 (606)
T ss_dssp T-------TC-CCS-------------------------------------------------EECTTTTSSCTTCCEEE
T ss_pred C-------CC-ccc-------------------------------------------------ccChhhhcccccccEee
Confidence 5 42 111 11223333444444444
Q ss_pred CCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCc--EEEccCC
Q 040297 178 LSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM--DLNLSRN 255 (773)
Q Consensus 178 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~L~~n 255 (773)
+++|.+++..|.. +.++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+ ..+++|+ +|++++|
T Consensus 112 L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTC
T ss_pred ccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCC
Confidence 4444444322222 2445555555555555544332233335555555555555553223222 2245555 5555555
Q ss_pred ccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCC-----CcCcccccCCC--CCcEEEcccc
Q 040297 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ-----GHIFSKKFNLT--NLMRLQLDGN 328 (773)
Q Consensus 256 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~--~L~~L~L~~n 328 (773)
.+++..|..+.. .+|++|++++|. .++..+ .++..+....+....+. ...+..+..+. +|++|++++|
T Consensus 190 ~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 190 DIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ccCccChhHhhh-ccccccccCCch---hHHHHh-hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 555544444332 355555555553 222221 22333332222222111 11112222222 5666677777
Q ss_pred cCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCC
Q 040297 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 329 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 666655556666677777777777666 4556666667777777777776666666666777777777777766654443
Q ss_pred C-C-CCCceeEEECCCccccccc--hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCccc-ccC
Q 040297 409 C-F-SPAFIEQVHLSKNKIEGQL--ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ-LCE 483 (773)
Q Consensus 409 ~-~-~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~ 483 (773)
. + .+++|+.|++++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..+.. +..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 2 2 3667777777777776665 667788888888888888888777888888888999999999888766544 788
Q ss_pred CCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccc
Q 040297 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG 563 (773)
Q Consensus 484 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (773)
+++|+.|++++|.+++..|..+..
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------------------- 447 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDG-------------------------------------------------------- 447 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTT--------------------------------------------------------
T ss_pred cccCCEEECCCCccCCcCHHHHhC--------------------------------------------------------
Confidence 889999999999888766655443
Q ss_pred cccccccEEecccCcCccc---CChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCC
Q 040297 564 RILTSMSGIDLSCNKLTGE---IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNT 640 (773)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 640 (773)
+++|++|++++|++++. .+..++.+++|++|+|++|.+++..|..|+++++|+.|||++|++++.+|+.+..++.
T Consensus 448 --l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 448 --LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp --CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred --CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 34888899999988862 3367899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 641 LAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 641 L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
| .|++++|++++.+|..++.+++++.+++++|||.|+|+.
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9 999999999999998888899999999999999999974
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-54 Score=498.03 Aligned_cols=528 Identities=19% Similarity=0.164 Sum_probs=400.3
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+.. ++++|+|++|.++ .+++.+|+++++|++|+|++|.+... .|..|+++++|++|++++|.+++..|.
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 99 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAET- 99 (606)
T ss_dssp SSCCTTSCT--TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTT-
T ss_pred ccCcCCCCC--cCcEEEccCCccC-cCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChh-
Confidence 567777754 7999999999999 66557999999999999999999886 788999999999999999999966665
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcC
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFP 164 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 164 (773)
.|+++++|++|+++ +| .+... +...+.+++ +|++|++++|.+.+..+
T Consensus 100 ~~~~l~~L~~L~L~-------~n-~i~~l-~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~ 146 (606)
T 3t6q_A 100 ALSGPKALKHLFFI-------QT-GISSI-DFIPLHNQK------------------------TLESLYLGSNHISSIKL 146 (606)
T ss_dssp TTSSCTTCCEEECT-------TS-CCSCG-GGSCCTTCT------------------------TCCEEECCSSCCCCCCC
T ss_pred hhcccccccEeecc-------cc-CcccC-CcchhccCC------------------------cccEEECCCCcccccCc
Confidence 89999999999998 63 33221 011122222 45555555565555322
Q ss_pred hhhcCCCCCCEEECCCCCCccccchhHhhcCCCCC--EEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh
Q 040297 165 KFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLE--TLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242 (773)
Q Consensus 165 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 242 (773)
..+..+++|++|++++|.+++..|.. +..+++|+ +|++++|.+.+..+..+. ..+|++|++++|. .++..+..
T Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~ 221 (606)
T 3t6q_A 147 PKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKG 221 (606)
T ss_dssp CTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHH
T ss_pred ccccCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhh
Confidence 23333666666666666666444433 35666666 666666666655554443 2456666666654 12222221
Q ss_pred CCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCC--CccEEEcccCcCCCcCcccccCCCCC
Q 040297 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF--LLEILALSNNNLQGHIFSKKFNLTNL 320 (773)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L 320 (773)
+.++....+.-..+. .+... .++...+.++. +|+.|++++|.+.+..+..+..+++|
T Consensus 222 -l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 222 -LKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp -TTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred -ccccchhheechhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 333333322221111 01100 22222222232 68888888888888877778888889
Q ss_pred cEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccc-cccCCCCCcEEEccC
Q 040297 321 MRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI-EFCQLDYLTILDLSN 399 (773)
Q Consensus 321 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 399 (773)
++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|+.|++++
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 99999888888 6777888888899999999988877778888888999999999888765554 478889999999999
Q ss_pred CCCCCCC--CCCC-CCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccch-hhhcCCCCcEEEccCccccc
Q 040297 400 NAIFGTL--PSCF-SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN-WINILPQLSSLLLGNNYIEG 475 (773)
Q Consensus 400 n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 475 (773)
|.+.+.. +..+ .+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+++
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 9887664 4333 478899999999999888888999999999999999999876554 48889999999999999998
Q ss_pred cCcccccCCCCCCEEEccCCcCCCcCc---chhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEE
Q 040297 476 EIPVQLCELKEVRLIDLSHNNLSGYIP---ACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552 (773)
Q Consensus 476 ~~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (773)
..|..+..+++|+.|++++|++++... ..+.
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---------------------------------------------- 473 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ---------------------------------------------- 473 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------------------------------
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------------------------------------------
Confidence 889999999999999999999976321 1221
Q ss_pred EecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCC
Q 040297 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 553 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 632 (773)
.+++|+.|++++|++++..|..|+.+++|++|+|++|++++..|+.|.++++| .||+++|++++.+|
T Consensus 474 ------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 474 ------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp ------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 24689999999999999889999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCCEEEccCCcccccCC
Q 040297 633 SQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 633 ~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
..+..+++|+.|++++|++.+..+
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999987655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-54 Score=496.46 Aligned_cols=539 Identities=17% Similarity=0.160 Sum_probs=378.5
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
-++++.+++.++ .+|. .+. ++|++|+|++|.+++. .+..|.++++|++|++++|.+++..|. .|.++++|++|+
T Consensus 13 ~~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred CCceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeE
Confidence 467888888888 7774 443 7888888888888775 556788888888888888888854444 788888888888
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +| .+....+ ..+.+++ +|++|++++|.+.+..+..++++++|++|
T Consensus 87 Ls-------~n-~l~~~~p-~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 87 LT-------GN-PIQSFSP-GSFSGLT------------------------SLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CT-------TC-CCCCCCT-TSSTTCT------------------------TCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CC-------CC-cccccCh-hhcCCcc------------------------cCCEEEccCCccccccccccCCCCCCCEE
Confidence 87 53 2221111 1122222 33344444444444444445555555555
Q ss_pred ECCCCCCcc-ccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcC----EEEccCCcCccCCchhHhhCCCCCcEEE
Q 040297 177 DLSHLNLSG-NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLA----ILDVSKNFFQGHIPVEIGTYLPGLMDLN 251 (773)
Q Consensus 177 ~L~~~~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 251 (773)
++++|.+.+ .+|..+ +++++|++|++++|.+.+..+..+..+++|+ +|++++|.++ .++...+... +|++|+
T Consensus 134 ~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~ 210 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELT 210 (606)
T ss_dssp ECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEE
T ss_pred eCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeee
Confidence 555555543 334432 4555555555555555554444444333322 4555555554 3333333322 455555
Q ss_pred ccCCccC-ccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCC--CCcEEEc-cc
Q 040297 252 LSRNAFN-GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT--NLMRLQL-DG 327 (773)
Q Consensus 252 L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L-~~ 327 (773)
+++|.+. +..|..+.+++.|+.+++..+.+.+. ..+....+..+..+. .++.+++ ..
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-------------------~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE-------------------RNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS-------------------CCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred ccCCccchhHHHHHhccccccccccccccccccC-------------------CcccccChHHhhhhhhccHhheecccc
Confidence 5555443 23344445555555544443332210 000001111111111 4556666 56
Q ss_pred ccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCC
Q 040297 328 NNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP 407 (773)
Q Consensus 328 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 407 (773)
|.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+..
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred ccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 677766666 778888888888888886 345 677788888888888888 4666 44 8888888888888654433
Q ss_pred CCCCCCceeEEECCCccccccc--hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCC
Q 040297 408 SCFSPAFIEQVHLSKNKIEGQL--ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCEL 484 (773)
Q Consensus 408 ~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 484 (773)
....+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..+ ..+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 3335788999999999888763 7888999999999999999984 66888999999999999999998877 689999
Q ss_pred CCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccc
Q 040297 485 KEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564 (773)
Q Consensus 485 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (773)
++|+.|++++|.+++..|..+..
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------------------- 446 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLG--------------------------------------------------------- 446 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTT---------------------------------------------------------
T ss_pred ccCCEEECcCCCCCccchhhhcC---------------------------------------------------------
Confidence 99999999999998877766543
Q ss_pred ccccccEEecccCcCcc-cCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 565 ILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
+++|+.|++++|++++ .+|..++.+++|++|+|++|.+++..|..|+++++|+.|+|++|++++.+|..+..+++|+.
T Consensus 447 -l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 447 -LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp -CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred -CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 3589999999999998 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcccccCCCCCcccc-cCCcCcccCCCCCCCCCCCC
Q 040297 644 FKVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGWPLSK 683 (773)
Q Consensus 644 L~ls~N~l~~~~p~~~~~~~-~l~~~~l~~Np~lC~~~l~~ 683 (773)
|++++|+++. +|..+..++ +++.+++++|||.|+|+..+
T Consensus 526 L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 526 LDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp EECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred EECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 9999999995 555577776 59999999999999998753
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-53 Score=504.83 Aligned_cols=559 Identities=21% Similarity=0.172 Sum_probs=407.9
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCcc-chhhhcCCCCcEEECCCcccccccCh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQL-LSSIASFTSLKYLSMQDSVFKGALHG 83 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~i~~ 83 (773)
..+|. -.+++++|||++|.++ .+++.+|.++++|++|||++|..... + |..|.++++|++|+|++|.+.+..|.
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56776 4579999999999999 55557999999999999999977665 5 78899999999999999999976676
Q ss_pred hhhcCCCCCcEEeCcchhhccCCCcccccccCc-ccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCC
Q 040297 84 QDFRKFKNLEHLDMGWVQLILSNNHFFQIPISL-EPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGT 162 (773)
Q Consensus 84 ~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~-~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 162 (773)
.|+++++|++|+|+ + |.+.+..+. ..+.+++ +|++|++++|.+.+.
T Consensus 92 -~~~~l~~L~~L~Ls-------~-n~l~~~~~~~~~~~~L~------------------------~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 92 -AFQGLFHLFELRLY-------F-CGLSDAVLKDGYFRNLK------------------------ALTRLDLSKNQIRSL 138 (844)
T ss_dssp -SSCSCSSCCCEECT-------T-CCCSSCCSTTCCCSSCS------------------------SCCEEEEESCCCCCC
T ss_pred -HccCCcccCEeeCc-------C-CCCCcccccCccccccC------------------------CCCEEECCCCccccc
Confidence 89999999999998 7 444432221 1233343 667777778887776
Q ss_pred cC-hhhcCCCCCCEEECCCCCCccccchhHhhcC--CCCCEEEccCCcCccCCccCccCCCC------cCEEEccCCcCc
Q 040297 163 FP-KFLYHQHDLKNADLSHLNLSGNFPNWLVENN--TNLETLLLANNSLFGSFRMPIHSYQK------LAILDVSKNFFQ 233 (773)
Q Consensus 163 ~~-~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~Ls~n~l~ 233 (773)
.+ ..+.++++|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+..+..+..+++ |++|++++|.+.
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred ccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 54 679999999999999999988777664 455 89999999999999988877776665 999999999998
Q ss_pred cCCchhHhhCC--CCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhc--CCCccEEEcccCcCCCc
Q 040297 234 GHIPVEIGTYL--PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATG--CFLLEILALSNNNLQGH 309 (773)
Q Consensus 234 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~ 309 (773)
+.++..+...+ ++++.+.++.+..... +..+.+. ......+.+ .++|+.|++++|.+.+.
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred hhHHHHHHhhcCcccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCccccc
Confidence 88887766543 5788898875443211 1122222 111112222 24566677776666666
Q ss_pred CcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCC
Q 040297 310 IFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQL 389 (773)
Q Consensus 310 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 389 (773)
.+..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 66666667777777777777766666666677777777777777766666667777777777777777766666666677
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccccc-chhhhcCCCCcEEEc
Q 040297 390 DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI-PNWINILPQLSSLLL 468 (773)
Q Consensus 390 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 468 (773)
++|+.|++++|.+++... +++|+.|++++|+++.... ...+++.|++++|++++.. +..+..+++|+.|++
T Consensus 362 ~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccc----cccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 777777777776653222 5567777777777764322 2456888888888888642 334567899999999
Q ss_pred cCccccccCcc-cccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 469 GNNYIEGEIPV-QLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 469 ~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
++|++++..+. .+..+++|+.|++++|.+++..+......
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------------- 474 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD--------------------------------------- 474 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS---------------------------------------
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchh---------------------------------------
Confidence 99999865443 45668899999999999874332211000
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
.+ ..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+. ++|+.|||++|++
T Consensus 475 ------------~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 475 ------------VF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp ------------CS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred ------------hh--cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence 00 1256899999999999998899999999999999999999988777776 8999999999999
Q ss_pred cccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCCCCCCCCC
Q 040297 628 HGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNG 689 (773)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~~~c~~~~ 689 (773)
++.+|+.+. +|+.+++++|++....+- ..+.. .....|...|+.+....|..+.
T Consensus 539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~~--~~f~~---~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 539 LAPNPDVFV---SLSVLDITHNKFICECEL--STFIN---WLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp CCCCSCCCS---SCCEEEEEEECCCCSSSC--CSHHH---HHHHTTTTTCCCGGGCCCSSCS
T ss_pred CCCChhHhC---CcCEEEecCCCccccccc--HHHHH---HHHhcCcccccccccCccCCch
Confidence 999998764 789999999999875542 12211 1123456667776667776543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-52 Score=481.72 Aligned_cols=520 Identities=18% Similarity=0.162 Sum_probs=365.2
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+. +++++|+|++|.++ .+++.+|.++++|++|+|++|.+++. .|..|+++++|++|++++|.+++..|.
T Consensus 24 ~~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~- 98 (606)
T 3vq2_A 24 SKVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPG- 98 (606)
T ss_dssp SSCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTT-
T ss_pred ccCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChh-
Confidence 56777665 79999999999999 66657899999999999999999876 678899999999999999999966565
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCC-Cc
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGG-TF 163 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~ 163 (773)
.|+++++|++|+++ +| .+... +...+.+++ +|++|++++|.+.+ .+
T Consensus 99 ~~~~l~~L~~L~L~-------~n-~l~~~-~~~~~~~l~------------------------~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 99 SFSGLTSLENLVAV-------ET-KLASL-ESFPIGQLI------------------------TLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp SSTTCTTCCEEECT-------TS-CCCCS-SSSCCTTCT------------------------TCCEEECCSSCCCCCCC
T ss_pred hcCCcccCCEEEcc-------CC-ccccc-cccccCCCC------------------------CCCEEeCCCCcccceec
Confidence 89999999999998 64 33321 111233333 67777778888876 57
Q ss_pred ChhhcCCCCCCEEECCCCCCccccchhHhhcCCC----CCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchh
Q 040297 164 PKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTN----LETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239 (773)
Q Consensus 164 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 239 (773)
|..+.++++|++|++++|.+++..|..+ +.+++ +++|++++|.+.+..+..+... +|++|++++|.+.+.....
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHH
Confidence 9999999999999999999997666543 44444 5599999999987766666554 8999999999987555555
Q ss_pred HhhCCCCCcEEEccCCccCcc------CchhhhCCC--CCcEEEe-ecccCCCccchhHhhcCCCccEEEcccCcCCCcC
Q 040297 240 IGTYLPGLMDLNLSRNAFNGS------IPSSFADMK--MLERLDI-SYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310 (773)
Q Consensus 240 ~~~~l~~L~~L~L~~n~l~~~------~p~~~~~l~--~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 310 (773)
....+++++.+++..+.+.+. .+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+....
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC
T ss_pred HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh
Confidence 556689999998876554321 111222221 2344444 44445444443 333555555555555554322
Q ss_pred cccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCC--ccccccC
Q 040297 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP--IPIEFCQ 388 (773)
Q Consensus 311 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~ 388 (773)
.+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+.+. .+..+..
T Consensus 302 --~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 302 --DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp --CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred --hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 444555555555555555 2444 23 4555555555555333221 344455555555555554433 1344444
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEE
Q 040297 389 LDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLL 467 (773)
Q Consensus 389 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 467 (773)
+++|+ .|++++|.+.+. +..+..+++|++|++++|++.+..| ..+..+++|++|+
T Consensus 375 ~~~L~-----------------------~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 375 TNSLR-----------------------HLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CSCCC-----------------------EEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCccc-----------------------EeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 44444 455555544432 2456667777777777777776665 5677778888888
Q ss_pred ccCccccccCcccccCCCCCCEEEccCCcCCCc-CcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCC
Q 040297 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY-IPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGK 546 (773)
Q Consensus 468 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (773)
+++|++++..|..+..+++|+.|++++|++++. +|..+..
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------------------------- 471 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------------------------------------- 471 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------------------
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---------------------------------------
Confidence 888888877777788888888888888887763 4444332
Q ss_pred cceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcccc
Q 040297 547 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+++|+.|++++|++++..|..++.+++|++|+|++|++++.+|..|+++++|+.|||++|+
T Consensus 472 -------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 472 -------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp -------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred -------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 3478888888888888888889999999999999999998889999999999999999999
Q ss_pred CcccCCcccccCC-CCCEEEccCCcccccCC
Q 040297 627 LHGKIPSQLTVLN-TLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 627 l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p 656 (773)
++ .+|..+..++ +|++|++++|++.+..+
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 98 5666688887 59999999999987555
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=436.41 Aligned_cols=510 Identities=20% Similarity=0.214 Sum_probs=281.3
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
.++++-++.+++ ++|. .+ -+++++|+|++|.+++. .+..|.++++|++|++++|.+++ ++...|+++++|++|+
T Consensus 9 ~~~~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~ 82 (570)
T 2z63_A 9 NITYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLI 82 (570)
T ss_dssp TTEEECCSSCCS-SCCS-SS--CSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCcc-ccCC-Cc--cccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEe
Confidence 345556655565 5553 22 24566666666666654 34456666666666666666653 3333566666666666
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +|. +. +..|.++.++++|++|
T Consensus 83 L~-------~n~-l~-------------------------------------------------~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 83 LT-------GNP-IQ-------------------------------------------------SLALGAFSGLSSLQKL 105 (570)
T ss_dssp CT-------TCC-CC-------------------------------------------------EECTTTTTTCTTCCEE
T ss_pred Cc-------CCc-CC-------------------------------------------------ccCHhhhcCccccccc
Confidence 65 421 11 1111233334444444
Q ss_pred ECCCCCCccccchhHhhcCCCCCEEEccCCcCcc-CCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCC----cEEE
Q 040297 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFG-SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL----MDLN 251 (773)
Q Consensus 177 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~ 251 (773)
++++|.+++. +...++++++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+.. +++| ++|+
T Consensus 106 ~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~ 183 (570)
T 2z63_A 106 VAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLD 183 (570)
T ss_dssp ECTTSCCCCS-TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEE
T ss_pred cccccccccC-CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcc
Confidence 4444444321 11112445555555555555444 23444555555555555555554322222222 3344 5566
Q ss_pred ccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCC------cCcccccCCC--CCcEE
Q 040297 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG------HIFSKKFNLT--NLMRL 323 (773)
Q Consensus 252 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L 323 (773)
+++|.+++..|..+..+ +|++|++++|.............+..++.+.+....+.. .....+..++ .++.+
T Consensus 184 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 66666555555555444 566666665543322222223335555544443222111 1111111111 23444
Q ss_pred Ecccc-cCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCC
Q 040297 324 QLDGN-NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402 (773)
Q Consensus 324 ~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 402 (773)
+++++ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBS
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcc
Confidence 45444 444445555555555666666655555 344445555 5566666555555 2332 2445555555555554
Q ss_pred CCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccccc--chhhhcCCCCcEEEccCccccccCccc
Q 040297 403 FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI--PNWINILPQLSSLLLGNNYIEGEIPVQ 480 (773)
Q Consensus 403 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~ 480 (773)
.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+ .
T Consensus 338 ~~~~~~-------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 391 (570)
T 2z63_A 338 GNAFSE-------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-N 391 (570)
T ss_dssp CCBCCC-------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-E
T ss_pred cccccc-------------------------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-c
Confidence 433222 34555666666666655432 5556666667777777666664333 3
Q ss_pred ccCCCCCCEEEccCCcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccc
Q 040297 481 LCELKEVRLIDLSHNNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSY 559 (773)
Q Consensus 481 ~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (773)
+..+++|+.|++++|.+.+..|. .+.
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------- 418 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFL----------------------------------------------------- 418 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTT-----------------------------------------------------
T ss_pred ccccCCCCEEEccCCccccccchhhhh-----------------------------------------------------
Confidence 66677777777777766554331 111
Q ss_pred cccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCC-CCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 560 YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 560 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
.+++|++|++++|++.+..|..+..+++|++|+|++|.++ +.+|..|+.+++|+.||+++|++++.+|..+..+
T Consensus 419 -----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 419 -----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp -----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred -----cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 1346777777777777777777777777777788777776 4677777777778888888887777777777777
Q ss_pred CCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 639 NTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 639 ~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|+.|++++|++++..|..+..+++++.+++++||+.|+|+.
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 7788888888877777777677777777778888888887764
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-48 Score=439.05 Aligned_cols=461 Identities=18% Similarity=0.125 Sum_probs=381.7
Q ss_pred cccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEc
Q 040297 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227 (773)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 227 (773)
+++.|++++|.+.+..+..+.++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 7999999999998888889999999999999999998654444 588999999999999998888889999999999999
Q ss_pred cCCcCccCCchhHhhCCCCCcEEEccCCccCc-cCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCc----cEEEcc
Q 040297 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLL----EILALS 302 (773)
Q Consensus 228 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~L~ 302 (773)
++|.++ .++...+..+++|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...+..+.+| +.|+++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccC
Confidence 999998 5554334558999999999999987 46999999999999999999998 4544444457777 899999
Q ss_pred cCcCCCcCcccccCCCCCcEEEcccccCCc-cccccccCCCCCCeeeCcCCcCC------CCcchhhcCCC--CCcEEEc
Q 040297 303 NNNLQGHIFSKKFNLTNLMRLQLDGNNFTG-EISDSLSNCRLLAGLYLSDNHLS------GRIPRWLGNLS--ALEDIRM 373 (773)
Q Consensus 303 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~~l~--~L~~L~L 373 (773)
+|.+.+..+..+... +|++|++++|.... ..+..+..++.++...+....+. ......+..+. .++.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 999998888777655 89999999985432 34556677777776665432221 11122233332 3567788
Q ss_pred ccC-cCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccc
Q 040297 374 SNN-NLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGS 452 (773)
Q Consensus 374 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 452 (773)
.++ .+.+..+..+..+++|+.|++++|.+.+........ .|+.|++++|.+..... ..+++|+.|++++|.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccc
Confidence 877 677788888999999999999999998543334446 99999999999985443 4678999999999998876
Q ss_pred cchhhhcCCCCcEEEccCccccccC--cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccc
Q 040297 453 IPNWINILPQLSSLLLGNNYIEGEI--PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASV 530 (773)
Q Consensus 453 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (773)
.+. ..+++|++|++++|++++.. +..+..+++|+.|++++|.+.+..+. +..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~----------------------- 394 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG----------------------- 394 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET-----------------------
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc-----------------------
Confidence 654 67999999999999998654 67889999999999999998754332 222
Q ss_pred cCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCC-hhhhccCCCCeEeCCCCcCCCCCcc
Q 040297 531 YGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP-TQIGYLTRIHALNLSHNNLTGTIPT 609 (773)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~ 609 (773)
+++|+.|++++|.+++..| ..+..+++|++|++++|.+++..|.
T Consensus 395 -----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 395 -----------------------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp -----------------------------------CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred -----------------------------------cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 4589999999999997766 5789999999999999999999999
Q ss_pred ccccCccCCeeeCccccCc-ccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 610 TFSNLKQIESLDLSYNLLH-GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 610 ~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
.|.++++|+.|++++|+++ +.+|..+..+++|+.|++++|++++..|..+..+++++.+++++|....
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 9999999999999999998 6899999999999999999999999999989999999999999997644
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-47 Score=431.75 Aligned_cols=421 Identities=19% Similarity=0.219 Sum_probs=271.8
Q ss_pred hcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccC-CccCccCCCCcCEEEccCCcCccCCchhHhhCCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP 245 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 245 (773)
+.++++|++|++++|.+++..|.. ++++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.+|...+..++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred ccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 334444555555555554333333 35677777777777777652 4456777788888888888754466655555578
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcC---cccccCCCCCcE
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI---FSKKFNLTNLMR 322 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~ 322 (773)
+|++|++++|.+++..|..++.+++|++|+++.|.+. .+|...+..+++|++|++++|.+++.. ......+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 8888888888888888888888999999999998887 777777767888999999998888742 122335678888
Q ss_pred EEcccccCCccccc----cccCCCCCCeeeCcCCcCCCCc------chhhcCCCCCcEEEcccCcCCCCc-----ccccc
Q 040297 323 LQLDGNNFTGEISD----SLSNCRLLAGLYLSDNHLSGRI------PRWLGNLSALEDIRMSNNNLEGPI-----PIEFC 387 (773)
Q Consensus 323 L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 387 (773)
|++++|.+++..+. .+..+++|+.+++++|.+.+.. ...+..+.+++.|++.++.+.... +..+.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 88888877654332 3355667777777777665421 112334455555555555443210 00111
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccch---hhhcCCCCc
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN---WINILPQLS 464 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~ 464 (773)
. ...++.|++++|.+.......+..+++|++|++++|++++.+|. .++.+++|+
T Consensus 308 ~-----------------------~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 308 L-----------------------LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp H-----------------------STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred h-----------------------cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 1 23455555555555544444445566677777777766655432 255566777
Q ss_pred EEEccCccccccCc--ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCC
Q 040297 465 SLLLGNNYIEGEIP--VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542 (773)
Q Consensus 465 ~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (773)
+|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------- 408 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW----------------------------------- 408 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-----------------------------------
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-----------------------------------
Confidence 77777777664322 34666777777777777665 34432221
Q ss_pred CCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeC
Q 040297 543 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 622 (773)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 622 (773)
+++|++|++++|+++ .+|..+. ++|++|+|++|++++.+ ..+++|++|||
T Consensus 409 -----------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~L 458 (549)
T 2z81_A 409 -----------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYI 458 (549)
T ss_dssp -----------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEEC
T ss_pred -----------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEEC
Confidence 236677777777776 3444332 46777777777777542 46777788888
Q ss_pred ccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 623 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++|+++ .+|+ ...+++|++|++++|++++.+|..+..+++++.+++++|||.|+|+
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888777 5555 3567778888888888887777777777788888888888888876
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-45 Score=427.20 Aligned_cols=551 Identities=19% Similarity=0.172 Sum_probs=343.2
Q ss_pred CcccccCCCCC---CCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCccccccc
Q 040297 5 SKVLQSIGSLP---SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGAL 81 (773)
Q Consensus 5 ~~l~~~~~~l~---~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i 81 (773)
+.+|.+...+. .-++.+-++.+++ +||. .+- +++++|||++|.++.. .+.+|.++++|++|||++|+++ .+
T Consensus 18 ~~~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~-~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~-~i 91 (635)
T 4g8a_A 18 SSIPESWEPCVEVVPNITYQCMELNFY-KIPD-NLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQ-TI 91 (635)
T ss_dssp -------CCSEEEETTTEEECTTSCCS-SCCS-SSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCC-EE
T ss_pred CCCCCCCCCccccCCCCEEECCCCCcC-ccCC-CCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCC-Cc
Confidence 34454444332 2234555555666 5653 221 3567777777776653 3455677777777777777766 34
Q ss_pred ChhhhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCC
Q 040297 82 HGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGG 161 (773)
Q Consensus 82 ~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (773)
+..+|.++++|++|+|+ +|. ++. ++...+.+++ +|++|++++|.+.+
T Consensus 92 ~~~~f~~L~~L~~L~Ls-------~N~-l~~-l~~~~f~~L~------------------------~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 92 EDGAYQSLSHLSTLILT-------GNP-IQS-LALGAFSGLS------------------------SLQKLVAVETNLAS 138 (635)
T ss_dssp CTTTTTTCTTCCEEECT-------TCC-CCE-ECGGGGTTCT------------------------TCCEEECTTSCCCC
T ss_pred ChhHhcCCCCCCEEEcc-------CCc-CCC-CCHHHhcCCC------------------------CCCEEECCCCcCCC
Confidence 44466667777777766 421 111 1111111111 22222222232322
Q ss_pred CcChhhcCCCCCCEEECCCCCCccc-cchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhH
Q 040297 162 TFPKFLYHQHDLKNADLSHLNLSGN-FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEI 240 (773)
Q Consensus 162 ~~~~~l~~~~~L~~L~L~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 240 (773)
..+..++++++|++|++++|.+.+. .|.. +..+++|++|++++|++.+..+..+..+.+++
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~----------------- 200 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------------- 200 (635)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------------
T ss_pred CChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhh-----------------
Confidence 2223344444455555554444332 2222 24444555555555544444333332222111
Q ss_pred hhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCc------CCCcCcccc
Q 040297 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNN------LQGHIFSKK 314 (773)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~ 314 (773)
.....++++.|.+....+..+ ....++.+++++|.....++...+.++..++...+..+. +.......+
T Consensus 201 ----~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 201 ----LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp ----TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred ----hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 123345555555553333322 223345555555544433444444445555544443222 112222333
Q ss_pred cCCCCCcEEEcccccCCc---cccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCC
Q 040297 315 FNLTNLMRLQLDGNNFTG---EISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY 391 (773)
Q Consensus 315 ~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 391 (773)
..+..+...++..+.... ..+..+..+.+++.+++.++.+.... .+.....++.|++.+|.+.+..+ ..+..
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~ 350 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKS 350 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTT
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchh
Confidence 344455555554443321 22334555677777877777765432 34556778888888887764433 34567
Q ss_pred CcEEEccCCCCCCCCCCCCCCCceeEEECCCccccc--cchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEcc
Q 040297 392 LTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG--QLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG 469 (773)
Q Consensus 392 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 469 (773)
|+.+++..|..... +....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++.
T Consensus 351 L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 351 LKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp CCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred hhhcccccccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhh
Confidence 78888888876533 333447788888888887753 345667778899999999998874 45567789999999999
Q ss_pred CccccccCc-ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 470 NNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 470 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
.+......+ ..+..+++++.++++.|.+.+..+..+..
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~----------------------------------------- 467 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------------------------------- 467 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------------------
T ss_pred hcccccccccccccccccccccccccccccccccccccc-----------------------------------------
Confidence 888775544 56788999999999999998766654432
Q ss_pred eEEEEecCccccccccccccccEEecccCcC-cccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKL-TGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
++.++.|++++|.+ .+..|..|..+++|++|+|++|+|++..|..|+++++|++|+|++|++
T Consensus 468 -----------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 468 -----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp -----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred -----------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 34889999999985 446788999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCEEEccCCcccccCCCCCccc-ccCCcCcccCCCCCCCCCCC
Q 040297 628 HGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~l~~~~l~~Np~lC~~~l~ 682 (773)
++.+|..|..+++|++|++++|++++.+|..+..+ ++++.+++++|||.|+|.+.
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99999999999999999999999999999988887 68999999999999999753
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-46 Score=423.09 Aligned_cols=386 Identities=19% Similarity=0.193 Sum_probs=267.6
Q ss_pred cChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh
Q 040297 163 FPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242 (773)
Q Consensus 163 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 242 (773)
.|..+.++++|++|++++|.+.+.+|...+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+. .+|..++.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~ 193 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD 193 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHH
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHh
Confidence 34556777788888888887656666544578889999999999998888888888999999999999886 67777766
Q ss_pred CCCCCcEEEccCCccCccC--c-hhhhCCCCCcEEEeecccCCCccchhHh---hcCCCccEEEcccCcCCCcCcccccC
Q 040297 243 YLPGLMDLNLSRNAFNGSI--P-SSFADMKMLERLDISYNQLTGEIPERMA---TGCFLLEILALSNNNLQGHIFSKKFN 316 (773)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~--p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~ 316 (773)
.+++|++|++++|++++.. | .....+++|++|++++|.+++..+..+. ..+.+|+.+++++|.+.+...-.
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~--- 270 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--- 270 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc---
Confidence 6889999999999888642 1 2234578889999998888765554432 23566777777776655421100
Q ss_pred CCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC-----cchhhcCCCCCcEEEcccCcCCCCccccc-cCCC
Q 040297 317 LTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR-----IPRWLGNLSALEDIRMSNNNLEGPIPIEF-CQLD 390 (773)
Q Consensus 317 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~ 390 (773)
. .....+..+++|+.|++.++.+... .+..+....+|+.|++++|.+. .+|..+ ..++
T Consensus 271 --~-------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 271 --P-------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp --C-------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred --c-------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 0 0011223344555555555544321 1222334567888888888876 455544 4677
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc--hhhhcCCCCcEEEc
Q 040297 391 YLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP--NWINILPQLSSLLL 468 (773)
Q Consensus 391 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L 468 (773)
+|+.|++++|.+.+..+.. +..+..+++|++|++++|++++..+ ..+..+++|++|++
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~--------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKN--------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp TCCEEECCSSCCCHHHHHH--------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred cccEEEccCCccccccccc--------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 7777777777765432210 1123455666667777666664322 34667777777777
Q ss_pred cCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 469 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
++|+++ .+|..+..+++|++|++++|++++ +|..
T Consensus 395 s~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~-------------------------------------------- 428 (549)
T 2z81_A 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC-------------------------------------------- 428 (549)
T ss_dssp TTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT--------------------------------------------
T ss_pred CCCCCc-cCChhhcccccccEEECCCCCccc-ccch--------------------------------------------
Confidence 777777 566677777888888888887752 2211
Q ss_pred eEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.+++|+.||+++|++++.+ +.+++|++|+|++|+++ .+|. ...+++|+.|||++|+++
T Consensus 429 ----------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 429 ----------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ----------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ----------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 1237888899999888643 46788999999999998 6776 467899999999999999
Q ss_pred ccCCcccccCCCCCEEEccCCcccccCC
Q 040297 629 GKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 629 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
+.+|..+..+++|+.|++++|++++..|
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8888889999999999999999988776
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-46 Score=438.71 Aligned_cols=380 Identities=21% Similarity=0.259 Sum_probs=265.1
Q ss_pred CcCccCCchhHhhCCCCCcEEEccCCccCc-----------------cCchhhh--CCCCCcEEEeecccCCCccchhHh
Q 040297 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNG-----------------SIPSSFA--DMKMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 230 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
|.+++ +|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 45554 5555443 5566666666666655 2555555 666666666666666666664443
Q ss_pred hcCCCccEEEcccCc-CCC-cCcccccC-------CCCCcEEEcccccCCccccc--cccCCCCCCeeeCcCCcCCCCcc
Q 040297 291 TGCFLLEILALSNNN-LQG-HIFSKKFN-------LTNLMRLQLDGNNFTGEISD--SLSNCRLLAGLYLSDNHLSGRIP 359 (773)
Q Consensus 291 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~ 359 (773)
.+++|+.|++++|+ +++ .+|..+.. +++|++|++++|+++ .+|. .++.+++|+.|++++|.++ .+|
T Consensus 513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 36666666666665 555 44544333 347777777777777 5666 6777777777777777776 555
Q ss_pred hhhcCCCCCcEEEcccCcCCCCccccccCCCC-CcEEEccCCCCCCCCCCCCC-C--CceeEEECCCccccccchhhh--
Q 040297 360 RWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY-LTILDLSNNAIFGTLPSCFS-P--AFIEQVHLSKNKIEGQLESII-- 433 (773)
Q Consensus 360 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~-~--~~L~~L~l~~n~l~~~~~~~~-- 433 (773)
.++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+. . ++|+.|++++|.+.+.+|...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 6677777777777777776 56666777776 777777777776 4454443 2 337777777777766554322
Q ss_pred -c--CCCCeeEEeCCCCccccccchh-hhcCCCCcEEEccCccccccCcccccC--------CCCCCEEEccCCcCCCcC
Q 040297 434 -H--DSPYLVTLDLSYNRFHGSIPNW-INILPQLSSLLLGNNYIEGEIPVQLCE--------LKEVRLIDLSHNNLSGYI 501 (773)
Q Consensus 434 -~--~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~ 501 (773)
. .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 1 3357888888888888 44544 447788888888888887 45544333 238999999999887 56
Q ss_pred cchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc
Q 040297 502 PACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 581 (773)
Q Consensus 502 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 581 (773)
|..+.. ..+++|+.|+|++|++++
T Consensus 744 p~~l~~--------------------------------------------------------~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 744 SDDFRA--------------------------------------------------------TTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CGGGST--------------------------------------------------------TTCTTCCEEECCSSCCSS
T ss_pred hHHhhh--------------------------------------------------------ccCCCcCEEEeCCCCCCc
Confidence 655431 014588899999999986
Q ss_pred cCChhhhccCCCCeEeCCC------CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccC
Q 040297 582 EIPTQIGYLTRIHALNLSH------NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKI 655 (773)
Q Consensus 582 ~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 655 (773)
+|..++.+++|+.|+|++ |++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.||+++|++....
T Consensus 768 -lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp -CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred -cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 788888999999999976 888999999999999999999999999 78888866 69999999999998877
Q ss_pred CCCCcccccCCcCcccCCCCCC--CCC
Q 040297 656 PDRVAQFSTFEEDSYEGNPFLC--GWP 680 (773)
Q Consensus 656 p~~~~~~~~l~~~~l~~Np~lC--~~~ 680 (773)
+..+..........+.+|+..| +|+
T Consensus 844 ~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 844 VTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred hHHccccccchheeecCCCccccCCCC
Confidence 7665555556667788888766 665
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7e-48 Score=442.25 Aligned_cols=458 Identities=19% Similarity=0.232 Sum_probs=221.7
Q ss_pred cccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCC------cc------ccchhHhhcCCCCCEEEccCCcCccCCccC
Q 040297 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL------SG------NFPNWLVENNTNLETLLLANNSLFGSFRMP 215 (773)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l------~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (773)
+++.|+++++.+.|.+|..++++++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 666777777777777777777777777777777654 22 233322 22333 444444444433333
Q ss_pred ccC-CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEcc--CCccCccCchhhhCCCCCcEEEeecccCCCc--------
Q 040297 216 IHS-YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS--RNAFNGSIPSSFADMKMLERLDISYNQLTGE-------- 284 (773)
Q Consensus 216 ~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-------- 284 (773)
+.. +..+..+++....+.. .....++.+.+. .|++++ +|.+++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 221 0111111111000000 000011111111 344444 444555555555555555555532
Q ss_pred ---------cchhHh-hcCCCccEEEcccCcCCCcCcccccCCCCCcEEEccccc-CCc-cccccccCC------CCCCe
Q 040297 285 ---------IPERMA-TGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN-FTG-EISDSLSNC------RLLAG 346 (773)
Q Consensus 285 ---------~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~ 346 (773)
+|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|+.
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 444432 124555555555555555555555555555555555554 444 444444443 45555
Q ss_pred eeCcCCcCCCCcch--hhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCC-CCCc-eeEEECCC
Q 040297 347 LYLSDNHLSGRIPR--WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAF-IEQVHLSK 422 (773)
Q Consensus 347 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~ 422 (773)
|++++|.++ .+|. .++.+++|++|++++|.+.|.+| .+..+++|+.|++++|.+. .+|..+ .+++ |+.|++++
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 555555555 4444 45555555555555555554444 4455555555555555554 222222 2344 55555555
Q ss_pred ccccccchhhhcCCC--CeeEEeCCCCccccccchhhh-------cCCCCcEEEccCccccccCcccccCCCCCCEEEcc
Q 040297 423 NKIEGQLESIIHDSP--YLVTLDLSYNRFHGSIPNWIN-------ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493 (773)
Q Consensus 423 n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 493 (773)
|.++ .+|..+...+ +|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 5554 3333333322 455555555555555555444 44555555555555553222233445555555555
Q ss_pred CCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEe
Q 040297 494 HNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGID 573 (773)
Q Consensus 494 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 573 (773)
+|+++ .+|........ ...+.+++|+.|+
T Consensus 466 ~N~l~-~i~~~~~~~~~--------------------------------------------------~~~~~l~~L~~L~ 494 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDEN--------------------------------------------------ENFKNTYLLTSID 494 (636)
T ss_dssp SSCCS-BCCSSSSEETT--------------------------------------------------EECTTGGGCCEEE
T ss_pred CCCCC-CcCHHHhcccc--------------------------------------------------ccccccCCccEEE
Confidence 55555 34432211000 0001123555566
Q ss_pred cccCcCcccCChhhh--ccCCCCeEeCCCCcCCCCCccccccCccCCeeeC------ccccCcccCCcccccCCCCCEEE
Q 040297 574 LSCNKLTGEIPTQIG--YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL------SYNLLHGKIPSQLTVLNTLAVFK 645 (773)
Q Consensus 574 Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~L~ 645 (773)
|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+..+++|+.|+
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 6666655 4555554 55566666666666654 5555555666666665 34555556666666666666666
Q ss_pred ccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 646 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 646 ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
+++|++ +.+|..+. ++++.+++++||+.|
T Consensus 573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 666666 44554322 455666666666555
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.4e-48 Score=442.58 Aligned_cols=429 Identities=20% Similarity=0.247 Sum_probs=348.6
Q ss_pred CCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCc------c------CCccCccCCCCcCEEEccCCcCccCCch
Q 040297 171 HDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLF------G------SFRMPIHSYQKLAILDVSKNFFQGHIPV 238 (773)
Q Consensus 171 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 238 (773)
.+++.|+|+++.+.|.+|+.+ +++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 468888999999988888775 78899999999888652 1 111111 33455 66666666655554
Q ss_pred hHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEe--ecccCCCccchhHhhcCCCccEEEcccCcCCCc-------
Q 040297 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI--SYNQLTGEIPERMATGCFLLEILALSNNNLQGH------- 309 (773)
Q Consensus 239 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 309 (773)
.+...+..+..+++....+.. .....++.+.+ .+|++++ +|..+. .+++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred hHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCcccccccccccc
Confidence 443322223333333222211 11122333333 3578886 998765 599999999999999985
Q ss_pred ----------Cccccc--CCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc-CCC-CcchhhcCC------CCCc
Q 040297 310 ----------IFSKKF--NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSG-RIPRWLGNL------SALE 369 (773)
Q Consensus 310 ----------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~ 369 (773)
+|..+. ++++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|+
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 888888 99999999999999999999999999999999999998 998 789888876 9999
Q ss_pred EEEcccCcCCCCccc--cccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCC-eeEEeCCC
Q 040297 370 DIRMSNNNLEGPIPI--EFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPY-LVTLDLSY 446 (773)
Q Consensus 370 ~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~ 446 (773)
+|++++|.++ .+|. .+..+++|+.|++++|.+.|.+|....+++|+.|++++|.++ .+|..+..+++ |++|++++
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 9999999999 7888 899999999999999999988884444789999999999999 66777899999 99999999
Q ss_pred CccccccchhhhcCC--CCcEEEccCccccccCccccc-------CCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 447 NRFHGSIPNWINILP--QLSSLLLGNNYIEGEIPVQLC-------ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 447 n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
|+++ .+|..+...+ +|+.|++++|++++..|..+. .+++|+.|++++|+++ .+|..+..
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~---------- 454 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFS---------- 454 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHH----------
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHc----------
Confidence 9999 7888777654 999999999999999998888 8889999999999998 45554331
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhc-c------
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY-L------ 590 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l------ 590 (773)
.+++|+.|+|++|+++ .+|..+.. .
T Consensus 455 -----------------------------------------------~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 455 -----------------------------------------------TGSPLSSINLMGNMLT-EIPKNSLKDENENFKN 486 (636)
T ss_dssp -----------------------------------------------TTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred -----------------------------------------------cCCCCCEEECCCCCCC-CcCHHHhccccccccc
Confidence 1358999999999999 66654433 3
Q ss_pred -CCCCeEeCCCCcCCCCCccccc--cCccCCeeeCccccCcccCCcccccCCCCCEEEc------cCCcccccCCCCCcc
Q 040297 591 -TRIHALNLSHNNLTGTIPTTFS--NLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV------AYNNLSGKIPDRVAQ 661 (773)
Q Consensus 591 -~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l------s~N~l~~~~p~~~~~ 661 (773)
++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 29999999999999 7888887 99999999999999998 8999999999999999 568899999999999
Q ss_pred cccCCcCcccCCCC
Q 040297 662 FSTFEEDSYEGNPF 675 (773)
Q Consensus 662 ~~~l~~~~l~~Np~ 675 (773)
+++++.+++++|..
T Consensus 565 l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 565 CPSLTQLQIGSNDI 578 (636)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 99999999999987
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-46 Score=421.23 Aligned_cols=456 Identities=20% Similarity=0.158 Sum_probs=375.6
Q ss_pred cEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccC
Q 040297 150 TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSK 229 (773)
Q Consensus 150 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 229 (773)
+.+++++|.+. .+|..+. ++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46888888887 4676655 78999999999998665555 58899999999999999988888999999999999999
Q ss_pred CcCccCCchhHhhCCCCCcEEEccCCccCc-cCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCc--cEEEcccCcC
Q 040297 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLL--EILALSNNNL 306 (773)
Q Consensus 230 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l 306 (773)
|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+
T Consensus 79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 9998 78876 48899999999999987 478899999999999999999874 223457778 9999999999
Q ss_pred --CCcCcccccCCC-CCcEEEcccccCCcccc-ccccCCCCCCeeeCcCCc-------CCCCcchhhcCCCCCcEEEccc
Q 040297 307 --QGHIFSKKFNLT-NLMRLQLDGNNFTGEIS-DSLSNCRLLAGLYLSDNH-------LSGRIPRWLGNLSALEDIRMSN 375 (773)
Q Consensus 307 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~ 375 (773)
.+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|. +.+.+| .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 777777766655 34467788888876554 467789999999999987 555555 688899999999999
Q ss_pred CcCCCCcccccc---CCCCCcEEEccCCCCCCCCCCCC------CCCceeEEECCCccccccchhhhcCC---CCeeEEe
Q 040297 376 NNLEGPIPIEFC---QLDYLTILDLSNNAIFGTLPSCF------SPAFIEQVHLSKNKIEGQLESIIHDS---PYLVTLD 443 (773)
Q Consensus 376 n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~ 443 (773)
|.+.+..+..+. ..++|+.|++++|.+.+.+|..+ .++.|+.+++++|.+ ......+..+ .+|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 988754332221 24689999999999998777654 378999999999998 3332444433 6799999
Q ss_pred CCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCC--cCcchhhccCcCccccCCCCCC
Q 040297 444 LSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG--YIPACLVYTSLGEDYHEEGPPT 521 (773)
Q Consensus 444 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~~~~~~~~~~~ 521 (773)
+++|.+.... .+..+++|++|++++|++++..|..+..+++|+.|++++|++++ .+|..+..
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-------------- 372 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-------------- 372 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence 9999987432 12678999999999999999899999999999999999999986 44444433
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChh-hhccCCCCeEeCCC
Q 040297 522 SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSH 600 (773)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~ 600 (773)
+++|+.||+++|++++.+|.. +..+++|++|++++
T Consensus 373 --------------------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 373 --------------------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred --------------------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 458999999999999867754 88899999999999
Q ss_pred CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 601 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 601 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
|.+++..|..+. ++|+.||+++|+++ .+|..+..+++|+.|++++|++++..+..+..++.++.+++++||+.|+|+
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999988887765 79999999999999 788888899999999999999996444447889999999999999999997
Q ss_pred CC
Q 040297 681 LS 682 (773)
Q Consensus 681 l~ 682 (773)
+.
T Consensus 486 ~~ 487 (520)
T 2z7x_B 486 RI 487 (520)
T ss_dssp HH
T ss_pred ch
Confidence 53
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.9e-45 Score=409.81 Aligned_cols=461 Identities=18% Similarity=0.146 Sum_probs=254.0
Q ss_pred CEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeC
Q 040297 18 KTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDM 97 (773)
Q Consensus 18 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L 97 (773)
++||+++|+++ .+|. .+. ++|++|+|++|.+++. .|..|.++++|++|++++|++++..|. .|+++++|++|++
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEEC
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEec
Confidence 57999999998 7884 454 8999999999999876 567899999999999999999865555 7888888888888
Q ss_pred cchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEE
Q 040297 98 GWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNAD 177 (773)
Q Consensus 98 s~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 177 (773)
+ +| .+. . +|.. .+++|++|+
T Consensus 77 s-------~N-~l~---------------------------------------~-----------lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 77 S-------HN-KLV---------------------------------------K-----------ISCH--PTVNLKHLD 96 (520)
T ss_dssp C-------SS-CCC---------------------------------------E-----------EECC--CCCCCSEEE
T ss_pred C-------CC-cee---------------------------------------e-----------cCcc--ccCCccEEe
Confidence 7 53 111 0 1111 456788888
Q ss_pred CCCCCCcc-ccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCc--CEEEccCCcC--ccCCchhHhhCCC-CCcEEE
Q 040297 178 LSHLNLSG-NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKL--AILDVSKNFF--QGHIPVEIGTYLP-GLMDLN 251 (773)
Q Consensus 178 L~~~~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L~ 251 (773)
+++|.+++ .+|..+ +++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+.. +. ....++
T Consensus 97 L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~-l~~~~l~l~ 171 (520)
T 2z7x_B 97 LSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD-FNTESLHIV 171 (520)
T ss_dssp CCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT-CCEEEEEEE
T ss_pred ccCCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc-cccceEEEE
Confidence 88888775 355553 677788888888777754 234555555 7777777766 4444443322 11 122445
Q ss_pred ccCCccCccCch-hhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccC
Q 040297 252 LSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330 (773)
Q Consensus 252 L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 330 (773)
+++|.+.+.++. .+.++++|+.|++++|........ +.+.++ .+..+++|+.|++++|.+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~------------------~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY------------------FLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH------------------HHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccce------------------eecchh-hhccccchhhcccccccc
Confidence 555555443332 445556666666666541000000 222222 334444555555555444
Q ss_pred Ccccccccc---CCCCCCeeeCcCCcCCCCcchhh-----cCCCCCcEEEcccCcCCCCcc-ccccCC---CCCcEEEcc
Q 040297 331 TGEISDSLS---NCRLLAGLYLSDNHLSGRIPRWL-----GNLSALEDIRMSNNNLEGPIP-IEFCQL---DYLTILDLS 398 (773)
Q Consensus 331 ~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~ 398 (773)
++..+..+. ..++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 432111110 12355555555555555555544 5556666666666665 233 233322 456666666
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccc--c
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEG--E 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 476 (773)
+|.+..... +..+++|++|++++|++++..|.+++.+++|++|++++|++++ .
T Consensus 311 ~n~l~~~~~-------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 311 GTRMVHMLC-------------------------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp SSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred CCccccccc-------------------------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 665532210 0223344444444444444344444444444444444444443 2
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
+|..+..+++|++|++++|++++.+|....
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-------------------------------------------------- 395 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDC-------------------------------------------------- 395 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSC--------------------------------------------------
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchh--------------------------------------------------
Confidence 233444455555555555554443332100
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
..+++|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+.|||++|+++...+..+.
T Consensus 396 -------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 396 -------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp -------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 0023455555555555555544443 45666666666666 5555555666666666666666632222366
Q ss_pred cCCCCCEEEccCCcccccC
Q 040297 637 VLNTLAVFKVAYNNLSGKI 655 (773)
Q Consensus 637 ~l~~L~~L~ls~N~l~~~~ 655 (773)
.+++|+.|++++|++++..
T Consensus 466 ~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCTTCCEEECCSSCBCCCH
T ss_pred cCCcccEEECcCCCCcccC
Confidence 6666666666666665543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5e-44 Score=416.08 Aligned_cols=500 Identities=16% Similarity=0.154 Sum_probs=277.7
Q ss_pred CCCCEEeCCCCCCCCCccchhhhcCCCCcEEEC-CCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCccc
Q 040297 40 TNLEELILDKSDLHVSQLLSSIASFTSLKYLSM-QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEP 118 (773)
Q Consensus 40 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l-~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~ 118 (773)
.+++.|+|+++.+.+. +|+.+++|++|++|+| ++|.+.|..+.........+....+.. +.......+....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~--lr~~~~~~~l~~~~~-- 397 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR--IRMHYKKMFLDYDQR-- 397 (876)
T ss_dssp SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHH--HHTHHHHHHTCCCGG--
T ss_pred CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHH--HHHhhhhhhhccCcc--
Confidence 5788888888888887 8888888888888888 788887764431111000111000000 000000000000000
Q ss_pred ccCCCCCcEEecccccccccccC-CCCCCccccEEEccC--CCCCCCcChhhcCCCCCCEEECCCCCCcc----------
Q 040297 119 LFNLSKLKTFDGEIWAETESHYN-SVTPKFQLTSISLSG--YIDGGTFPKFLYHQHDLKNADLSHLNLSG---------- 185 (773)
Q Consensus 119 l~~l~~L~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~--~~~~~~~~~~l~~~~~L~~L~L~~~~l~~---------- 185 (773)
.++..+....+. ..+.... .......++.+.+.. |.+.+ +|..++++++|++|+|++|.+++
T Consensus 398 -~~~s~l~~~~l~---~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 398 -LNLSDLLQDAIN---RNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp -GGSCHHHHHHHH---TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred -hhhhHHHHHHhh---hCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence 000000000000 0000000 000111222222222 44555 66667777777777777777666
Q ss_pred -------ccchhH-hhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCc-Ccc-CCchhHhh------CCCCCcE
Q 040297 186 -------NFPNWL-VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNF-FQG-HIPVEIGT------YLPGLMD 249 (773)
Q Consensus 186 -------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~------~l~~L~~ 249 (773)
.+|..+ |.++++|++|+|++|.+.+.+|..+..+++|++|++++|+ ++| .+|..+.. .+++|++
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 255543 2256666666666666556566556666666666666665 555 45554432 1235556
Q ss_pred EEccCCccCccCch--hhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCC-CcEEEcc
Q 040297 250 LNLSRNAFNGSIPS--SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN-LMRLQLD 326 (773)
Q Consensus 250 L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~ 326 (773)
|++++|.++ .+|. .++++++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|+++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 666655555 4554 5555555666666555555 555 2233555555555555555 34444555555 5555555
Q ss_pred cccCCccccccccCCCC--CCeeeCcCCcCCCCcchhh---c--CCCCCcEEEcccCcCCCCccccccCCCCCcEEEccC
Q 040297 327 GNNFTGEISDSLSNCRL--LAGLYLSDNHLSGRIPRWL---G--NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399 (773)
Q Consensus 327 ~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 399 (773)
+|.++ .+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 55555 44444444332 5555555555554433211 1 123455555555555522222223455555555555
Q ss_pred CCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh--cCCCCcEEEccCccccccC
Q 040297 400 NAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN--ILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 400 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~ 477 (773)
|.+....+..+... ...+.++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +
T Consensus 707 N~L~~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 707 NLMTSIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp CCCSCCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred CcCCccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 55442221111100 001123448899999999888 6777776 88999999999999986 6
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
|..+..+++|+.|+|++|+
T Consensus 769 p~~l~~L~~L~~L~Ls~N~------------------------------------------------------------- 787 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQR------------------------------------------------------------- 787 (876)
T ss_dssp CCGGGGCTTCCEEECCCCB-------------------------------------------------------------
T ss_pred chhhhcCCCCCEEECCCCC-------------------------------------------------------------
Confidence 8888888999999988874
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
++++|++.+.+|..++.+++|+.|+|++|.+ +.+|..+. ++|+.|||++|++....+..+..
T Consensus 788 ---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 788 ---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp ---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred ---------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 2456777778888888888888888888888 57777765 58888888888888777666666
Q ss_pred CCCCCEEEccCCccc
Q 040297 638 LNTLAVFKVAYNNLS 652 (773)
Q Consensus 638 l~~L~~L~ls~N~l~ 652 (773)
...+..+.+.+|++.
T Consensus 850 ~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 850 YIEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHHTTCCEEECCTTS
T ss_pred cccchheeecCCCcc
Confidence 666667777777654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-42 Score=395.12 Aligned_cols=458 Identities=19% Similarity=0.152 Sum_probs=357.2
Q ss_pred ccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEcc
Q 040297 149 LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVS 228 (773)
Q Consensus 149 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 228 (773)
.+.++++++.+.+ +|..+. ++|++|++++|.+++..|.. +.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3788888888775 666554 78999999999998655544 5889999999999999998888889999999999999
Q ss_pred CCcCccCCchhHhhCCCCCcEEEccCCccCcc-CchhhhCCCCCcEEEeecccCCCccchhHhhcCCCc--cEEEcccCc
Q 040297 229 KNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLERLDISYNQLTGEIPERMATGCFLL--EILALSNNN 305 (773)
Q Consensus 229 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~n~ 305 (773)
+|.++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++. . +..+++| +.|++++|.
T Consensus 109 ~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 109 HNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESS
T ss_pred CCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeeccc
Confidence 99998 77766 488999999999999873 468899999999999999998742 2 2335556 999999999
Q ss_pred C--CCcCcccccCCC-CCcEEEcccccCCccccc-cccCCCCCCeeeCcCCcCC----CCcchhhcCCCCCcEEEcccCc
Q 040297 306 L--QGHIFSKKFNLT-NLMRLQLDGNNFTGEISD-SLSNCRLLAGLYLSDNHLS----GRIPRWLGNLSALEDIRMSNNN 377 (773)
Q Consensus 306 l--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~ 377 (773)
+ ++..+..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.+++.++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 9 777777776654 122567888888765543 4667889999999988521 0223457788899999988887
Q ss_pred CCCCcccc---ccCCCCCcEEEccCCCCCCCCCCCC------CCCceeEEECCCccccccchhhhc---CCCCeeEEeCC
Q 040297 378 LEGPIPIE---FCQLDYLTILDLSNNAIFGTLPSCF------SPAFIEQVHLSKNKIEGQLESIIH---DSPYLVTLDLS 445 (773)
Q Consensus 378 l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~Ls 445 (773)
+.+..... ....++|+.|++++|.+.+.+|..+ .+..|+.+++..+.+ ......+. ...+|++|+++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEcc
Confidence 65432111 1234589999999999988777654 245566666666665 22222222 22679999999
Q ss_pred CCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCc--CcchhhccCcCccccCCCCCCcc
Q 040297 446 YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY--IPACLVYTSLGEDYHEEGPPTSI 523 (773)
Q Consensus 446 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~ 523 (773)
+|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++. +|..+..
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------------- 401 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN---------------- 401 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT----------------
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC----------------
Confidence 99886432 125789999999999999988899999999999999999999853 2222322
Q ss_pred ccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCCh-hhhccCCCCeEeCCCCc
Q 040297 524 WCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT-QIGYLTRIHALNLSHNN 602 (773)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~ 602 (773)
+++|+.|++++|++++.+|. .+..+++|++|+|++|.
T Consensus 402 ------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 402 ------------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp ------------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred ------------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 45899999999999985665 58889999999999999
Q ss_pred CCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 603 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 603 l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
+++.+|..+. ++|+.|||++|+++ .+|..+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|+..
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9988777654 79999999999998 67777779999999999999999654444788999999999999999998753
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-41 Score=374.13 Aligned_cols=381 Identities=21% Similarity=0.214 Sum_probs=281.9
Q ss_pred CEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcc
Q 040297 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALS 302 (773)
Q Consensus 223 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 302 (773)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45677777776 6775 2 36899999999999888888899999999999999988777777667778889999999
Q ss_pred cCcCCCcCcccccCCCCCcEEEcccccCCcccccc--ccCCCCCCeeeCcCCcCCCCcchh-hcCCCCCcEEEcccCcCC
Q 040297 303 NNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDS--LSNCRLLAGLYLSDNHLSGRIPRW-LGNLSALEDIRMSNNNLE 379 (773)
Q Consensus 303 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 379 (773)
+|.+++..|..+.++++|++|++++|++++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99888888888888899999999999888755544 788888999999988888776765 788888888888888888
Q ss_pred CCccccccCC--CCCcEEEccCCCCCCCCCCCC---------CCCceeEEECCCccccccchhhhcCC---CCeeEEeCC
Q 040297 380 GPIPIEFCQL--DYLTILDLSNNAIFGTLPSCF---------SPAFIEQVHLSKNKIEGQLESIIHDS---PYLVTLDLS 445 (773)
Q Consensus 380 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~Ls 445 (773)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..+..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777777655 678888888888776544322 23556666666666666555544332 556666666
Q ss_pred CCccccccchhhhcCCCCcEEEccCccccccCccccc--CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCcc
Q 040297 446 YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC--ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSI 523 (773)
Q Consensus 446 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 523 (773)
+|...+... ..+.+.+..+..+. ..++|+.|++++|++++..|..+..
T Consensus 248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------- 297 (455)
T 3v47_A 248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH---------------- 297 (455)
T ss_dssp TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT----------------
T ss_pred ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc----------------
Confidence 665443211 01111111111222 2356778888888777666655433
Q ss_pred ccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcC
Q 040297 524 WCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 603 (773)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 603 (773)
+++|++|++++|++++..|..|+.+++|++|+|++|.+
T Consensus 298 ------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 298 ------------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp ------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 34777888888888877777788888888888888888
Q ss_pred CCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 604 TGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 604 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++..|..|+++++|+.|||++|++++..|..+..+++|++|++++|++++..+..+..+++++.+++++||+.|+||
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 87777888888888888888888887778888888888888888888887777666777888888888888888886
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-41 Score=382.29 Aligned_cols=459 Identities=17% Similarity=0.173 Sum_probs=221.7
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
.+++|+++|+++ .+|. .+. ++|++|+|++|.+++. .|..|.++++|++|++++|.+++..|. .|.++++|++|+
T Consensus 33 ~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEE
T ss_pred CcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEE
Confidence 356666666665 4553 232 5666666666666554 345566666666666666666533333 555566666666
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +|. +. .+|.. .+++|++|
T Consensus 107 Ls-------~N~--------------------------------------------------l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 107 VS-------HNR--------------------------------------------------LQ-NISCC--PMASLRHL 126 (562)
T ss_dssp CT-------TSC--------------------------------------------------CC-EECSC--CCTTCSEE
T ss_pred CC-------CCc--------------------------------------------------CC-ccCcc--ccccCCEE
Confidence 55 321 11 11111 34556666
Q ss_pred ECCCCCCcc-ccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCc--CEEEccCCcC--ccCCchhHhhCCC-CCcEE
Q 040297 177 DLSHLNLSG-NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKL--AILDVSKNFF--QGHIPVEIGTYLP-GLMDL 250 (773)
Q Consensus 177 ~L~~~~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L 250 (773)
++++|.+.+ .+|.. ++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+.. +. ....+
T Consensus 127 ~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l 201 (562)
T 3a79_B 127 DLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHL 201 (562)
T ss_dssp ECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEE
T ss_pred ECCCCCccccCchHh-hcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc-cCcceEEE
Confidence 666666654 22333 35666666666666665442 23333333 5666665555 4333333221 11 11133
Q ss_pred EccCCccCccCch-hhhCCCCCcEEEeecccCCC-ccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccc
Q 040297 251 NLSRNAFNGSIPS-SFADMKMLERLDISYNQLTG-EIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328 (773)
Q Consensus 251 ~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 328 (773)
++++|.+.+.++. .+..+++|+.|++++|...- .+ .+ ....+..+++|+.+++.++
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l---------------------~~-~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL---------------------MT-FLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH---------------------HH-HHHHHHSCSSCEEEEEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchH---------------------HH-HHHHHhccCcceEEEecCC
Confidence 4444444433322 23344455555555543100 00 00 0112333444444444444
Q ss_pred cCCccc----cccccCCCCCCeeeCcCCcCCCCcchhh-----cCCCCCcEEEcccCcCCCCcc-cccc---CCCCCcEE
Q 040297 329 NFTGEI----SDSLSNCRLLAGLYLSDNHLSGRIPRWL-----GNLSALEDIRMSNNNLEGPIP-IEFC---QLDYLTIL 395 (773)
Q Consensus 329 ~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L 395 (773)
.+.+.. +.. ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|+.|
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 333211 111 112345555555555544444433 3344444444444444 122 1111 12445566
Q ss_pred EccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccc
Q 040297 396 DLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEG 475 (773)
Q Consensus 396 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 475 (773)
++++|.+..... ...+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 337 ~l~~n~~~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 337 SISDTPFIHMVC-------------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp EEESSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred EccCCCcccccC-------------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 666555432110 1234445555555555554445555555555555555555553
Q ss_pred c--CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEE
Q 040297 476 E--IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFT 553 (773)
Q Consensus 476 ~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (773)
. +|..+..+++|+.|++++|++++.+|....
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----------------------------------------------- 424 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC----------------------------------------------- 424 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-----------------------------------------------
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhh-----------------------------------------------
Confidence 2 233455555566666666655543332210
Q ss_pred ecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCc
Q 040297 554 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPS 633 (773)
Q Consensus 554 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 633 (773)
..+++|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+.++++|+.|||++|++++..+.
T Consensus 425 ----------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 425 ----------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp ----------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred ----------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 0123566666666666555554443 46666666666666 4555555666777777777776633333
Q ss_pred ccccCCCCCEEEccCCcccccCC
Q 040297 634 QLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 634 ~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
.+..+++|+.|++++|++.+..|
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCHH
T ss_pred HHhcCCCCCEEEecCCCcCCCcc
Confidence 36666777777777777665444
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-39 Score=375.85 Aligned_cols=520 Identities=17% Similarity=0.141 Sum_probs=351.1
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+. +++++|||++|.|+ .+++.+|.++++|++|||++|+++.. .|.+|.++++|++|+|++|+++ .+|..
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~-~l~~~ 118 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQ-SLALG 118 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCC-EECGG
T ss_pred CccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCC-CCCHH
Confidence 46776654 48999999999999 78878999999999999999999875 4667999999999999999998 56766
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCC-Cc
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGG-TF 163 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~ 163 (773)
.|.++++|++|+|+ +| .++. ++...+++++ +|++|++++|.+.+ ..
T Consensus 119 ~f~~L~~L~~L~Ls-------~N-~l~~-l~~~~~~~L~------------------------~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 119 AFSGLSSLQKLVAV-------ET-NLAS-LENFPIGHLK------------------------TLKELNVAHNLIQSFKL 165 (635)
T ss_dssp GGTTCTTCCEEECT-------TS-CCCC-STTCCCTTCT------------------------TCCEEECCSSCCCCCCC
T ss_pred HhcCCCCCCEEECC-------CC-cCCC-CChhhhhcCc------------------------ccCeeccccCccccCCC
Confidence 89999999999998 74 3332 2222344444 56667777777765 46
Q ss_pred ChhhcCCCCCCEEECCCCCCccccchhHhhcCC----CCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchh
Q 040297 164 PKFLYHQHDLKNADLSHLNLSGNFPNWLVENNT----NLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239 (773)
Q Consensus 164 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 239 (773)
|..+..+++|++|++++|.+++..+..+ ..+. ....++++.|.+....+..+ ....++.+++.+|.....++..
T Consensus 166 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~ 243 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKT 243 (635)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHH
T ss_pred chhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccch
Confidence 7889999999999999999987666543 3333 34578999998876555444 4456788899888766555556
Q ss_pred HhhCCCCCcEEEccCCc------cCccCchhhhCCCCCcEEEeecccCCCccc--hhHhhcCCCccEEEcccCcCCCcCc
Q 040297 240 IGTYLPGLMDLNLSRNA------FNGSIPSSFADMKMLERLDISYNQLTGEIP--ERMATGCFLLEILALSNNNLQGHIF 311 (773)
Q Consensus 240 ~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (773)
.+..++.++...+..+. +.......+..+..+...++..+....... ...+....+++.+.+.++.+....
T Consensus 244 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~- 322 (635)
T 4g8a_A 244 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK- 322 (635)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-
T ss_pred hhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-
Confidence 66667777777665432 222333445555556655555543321111 011222445555555555544322
Q ss_pred ccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCC--CccccccCC
Q 040297 312 SKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG--PIPIEFCQL 389 (773)
Q Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l 389 (773)
.+.....++.|++.+|.+.+..+. .++.|+.+++..|...... ....+++|+.+++++|.+.. ..+..+..+
T Consensus 323 -~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 323 -DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp -GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred -ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhh
Confidence 223344555555555554432221 2344445555544443221 12234445555555444431 122223334
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEEc
Q 040297 390 DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLLL 468 (773)
Q Consensus 390 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 468 (773)
. +++.+++..+.+... +..+..+++|+.++++.+......+ ..+..+++++.+++
T Consensus 397 ~-----------------------~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 397 I-----------------------SLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp S-----------------------CCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred h-----------------------hhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccc
Confidence 4 455555555544332 2234556677777777666554433 34666778888888
Q ss_pred cCccccccCcccccCCCCCCEEEccCCcCCC-cCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSG-YIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 469 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
+.|.+.+..+..+..+++|+.|++++|++.+ ..|..+..
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---------------------------------------- 492 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------------------------- 492 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------------------
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhh----------------------------------------
Confidence 8888887777778888888888888887543 23333322
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
+++|++|||++|++++..|..|+++++|++|+|++|+|++..|..|+++++|+.|||++|++
T Consensus 493 ------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 493 ------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp ------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred ------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 45888899999999988889999999999999999999988889999999999999999999
Q ss_pred cccCCcccccC-CCCCEEEccCCcccc
Q 040297 628 HGKIPSQLTVL-NTLAVFKVAYNNLSG 653 (773)
Q Consensus 628 ~~~~p~~l~~l-~~L~~L~ls~N~l~~ 653 (773)
++.+|+.+..+ ++|++|++++|+++.
T Consensus 555 ~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 555 MTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999888 689999999999875
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-40 Score=365.36 Aligned_cols=386 Identities=20% Similarity=0.187 Sum_probs=267.7
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEcc
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 253 (773)
+.++.+++.++ .+|. + .++|++|+|++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34566666665 5554 2 36788888888888887788888888888888888888767766666668888888888
Q ss_pred CCccCccCchhhhCCCCCcEEEeecccCCCccchh-HhhcCCCccEEEcccCcCCCcCccc-ccCCCCCcEEEcccccCC
Q 040297 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPER-MATGCFLLEILALSNNNLQGHIFSK-KFNLTNLMRLQLDGNNFT 331 (773)
Q Consensus 254 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 331 (773)
+|.+++..|..|+++++|++|++++|.+++.+|.. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88888888888888888888888888887544442 2445778888888888888776655 677888888888888887
Q ss_pred ccccccccCC--CCCCeeeCcCCcCCCCcchhh--------cCCCCCcEEEcccCcCCCCccccccCC---CCCcEEEcc
Q 040297 332 GEISDSLSNC--RLLAGLYLSDNHLSGRIPRWL--------GNLSALEDIRMSNNNLEGPIPIEFCQL---DYLTILDLS 398 (773)
Q Consensus 332 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~ 398 (773)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777666655 567778888877775443322 245667777777777766666555432 566666666
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 478 (773)
+|...+..... +.+....+..+.++ ..++|+.|++++|.+++..|
T Consensus 248 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 248 NSYNMGSSFGH-------------TNFKDPDNFTFKGL----------------------EASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp TCTTTSCCTTC-------------CSSCCCCTTTTGGG----------------------TTSCCCEEECCSSCCCEECT
T ss_pred cccccccccch-------------hhhccCcccccccc----------------------cccCceEEEecCccccccch
Confidence 66543321111 11111111111110 12456666666666665555
Q ss_pred ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcc
Q 040297 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMS 558 (773)
Q Consensus 479 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (773)
..+..+++|+.|++++|++++..|..+..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------------------- 321 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWG--------------------------------------------------- 321 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTT---------------------------------------------------
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcC---------------------------------------------------
Confidence 56666666666666666666544444332
Q ss_pred ccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 559 YYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 559 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
+++|+.|+|++|++++..|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+..+
T Consensus 322 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 322 -------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp -------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 2366777777777776667778888888888888888887778888888888888888888887777777888
Q ss_pred CCCCEEEccCCcccccCCC
Q 040297 639 NTLAVFKVAYNNLSGKIPD 657 (773)
Q Consensus 639 ~~L~~L~ls~N~l~~~~p~ 657 (773)
++|+.|++++|++++..|.
T Consensus 395 ~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCCEEECCSSCBCCCTTT
T ss_pred CcccEEEccCCCcccCCCc
Confidence 8888888888888887775
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.9e-39 Score=351.85 Aligned_cols=402 Identities=24% Similarity=0.293 Sum_probs=200.3
Q ss_pred ccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCC-------------CCEEEccCCcCccCCc
Q 040297 147 FQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTN-------------LETLLLANNSLFGSFR 213 (773)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~ 213 (773)
..+++|.+++|.+ +.+|..++++++|++|++++|.+.|.+|..+ +++++ +++|++++|.+++. |
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 3777788888777 7778778888888888888887777777654 44443 47777777776553 2
Q ss_pred cCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcC
Q 040297 214 MPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293 (773)
Q Consensus 214 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 293 (773)
. ..++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|.++ .+|. +..+
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l 152 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS 152 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred C---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence 2 13567777777777763 5532 3567777777777664 2221 156777777777776 4662 3456
Q ss_pred CCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEc
Q 040297 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373 (773)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 373 (773)
++|++|++++|++++. |.. .++|++|++++|++++ +| .++.+++|+.|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 7777777777777653 222 3467777777777764 44 46667777777777777664 3332 246777777
Q ss_pred ccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccccc
Q 040297 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI 453 (773)
Q Consensus 374 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 453 (773)
++|.+. .+| .+..+++|+.|++++|.+++. |.. +++|+.|++++|.+++... ..++|++|++++|++++ +
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~-l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PDL--PPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG-L 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CSC--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE-E
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-ccc--ccccCEEECCCCcccccCc----ccCcCCEEECcCCccCc-c
Confidence 777666 444 366677777777777766642 222 3566667777666665322 12566666666666664 1
Q ss_pred chhhhcCCCCcEEEccCccccccCcccccCC-CCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccC
Q 040297 454 PNWINILPQLSSLLLGNNYIEGEIPVQLCEL-KEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYG 532 (773)
Q Consensus 454 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (773)
|. ..++|+.|++++|++++. ..+ ++|+.|++++|++++ +|..
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---------------------------- 335 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---------------------------- 335 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc----------------------------
Confidence 21 124666666666666631 122 366666666666653 3321
Q ss_pred CCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCC--CCccc
Q 040297 533 SPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG--TIPTT 610 (773)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~ 610 (773)
+++|+.|++++|+++ .+|. .+++|++|++++|.+++ .+|..
T Consensus 336 ---------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 336 ---------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp ---------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred ---------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 135666666666666 3454 35666666666666665 45554
Q ss_pred cccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc--cCCCCCcccccCCcCcccCCCCCC
Q 040297 611 FSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG--KIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 611 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
+++ |+.|.+.+.+|.. +++|+.|++++|++++ .+|.. +..+.+.+|...|
T Consensus 379 l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 379 VED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD 430 (454)
T ss_dssp CCE--------EECCC-----------------------------------------------------
T ss_pred HHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence 432 2335555555543 3789999999999998 66653 4455566665544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-38 Score=348.34 Aligned_cols=409 Identities=23% Similarity=0.263 Sum_probs=277.2
Q ss_pred CCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCC-------------CEEECCCCCCccccc
Q 040297 122 LSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDL-------------KNADLSHLNLSGNFP 188 (773)
Q Consensus 122 l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------------~~L~L~~~~l~~~~~ 188 (773)
.++|+.++++.... ......+....+|++|++++|.+.+.+|..++++.+| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 46788888774332 2222234445589999999999999999999887764 999999999985 45
Q ss_pred hhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCC
Q 040297 189 NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 268 (773)
Q Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 268 (773)
. -.++|++|++++|.+++ +|.. +++|++|++++|.++ .+|.. .++|++|++++|.+++ +| .|+++
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 4 24789999999999987 4533 489999999999998 45431 3699999999999996 67 59999
Q ss_pred CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeee
Q 040297 269 KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 348 (773)
++|++|++++|+++ .+|.. ..+|++|++++|.+++. | .+..+++|++|++++|++++ +|... ++|++|+
T Consensus 153 ~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 153 SFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIV 221 (454)
T ss_dssp TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEE
T ss_pred CCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEE
Confidence 99999999999998 57753 46899999999999984 4 68899999999999999985 45432 6899999
Q ss_pred CcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcccccc
Q 040297 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428 (773)
Q Consensus 349 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 428 (773)
+++|.+. .+|. ++.+++|++|++++|++.+ +|. ..++|+.|++++|.+.+ +|.. +++|+.|++++|.+++.
T Consensus 222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEE
T ss_pred CcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcc
Confidence 9999998 6664 8899999999999999985 443 24899999999999987 4433 47899999999999874
Q ss_pred chhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhcc
Q 040297 429 LESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYT 508 (773)
Q Consensus 429 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 508 (773)
.. -.++|++|++++|++++ ++. ..++|++|++++|++++ +|.. +++|+.|++++|++++ +|. .
T Consensus 293 ~~----~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~--- 355 (454)
T 1jl5_A 293 SE----LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-L--- 355 (454)
T ss_dssp SC----CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-C---
T ss_pred cC----cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-h---
Confidence 32 12689999999999985 332 12589999999999996 5543 6899999999999973 443 0
Q ss_pred CcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc--cCChh
Q 040297 509 SLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG--EIPTQ 586 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~ 586 (773)
+++|+.|++++|++++ .+|..
T Consensus 356 ---------------------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 356 ---------------------------------------------------------PQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCSSCCCCCTT
T ss_pred ---------------------------------------------------------hhhccEEECCCCCCCcCCCChHH
Confidence 3489999999999998 67776
Q ss_pred hhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcc--cCCcccccCCCCCEEEccCCcccccCCCC
Q 040297 587 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--KIPSQLTVLNTLAVFKVAYNNLSGKIPDR 658 (773)
Q Consensus 587 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 658 (773)
++.+ +.|.+.+.+|.. +++|+.||+++|++++ .+|.+ ++.|.+.+|.+.+.+|..
T Consensus 379 l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 379 VEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp CCEE--------ECCC----------------------------------------------------------
T ss_pred HHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 6543 457788888864 5889999999999997 66654 566778999988877754
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.1e-37 Score=337.58 Aligned_cols=376 Identities=18% Similarity=0.143 Sum_probs=248.5
Q ss_pred cccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEc
Q 040297 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227 (773)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 227 (773)
.++......+...+..+..++++++|++|++++|.+++ +| . +..+++|++|++++|.+++. + +..+++|++|++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~L 92 (457)
T 3bz5_A 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLAC 92 (457)
T ss_dssp HHHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEEC
T ss_pred HHHHHHHHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEEC
Confidence 33333333444445555667778888888888888875 35 3 46788888888888887764 2 677778888888
Q ss_pred cCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCC
Q 040297 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307 (773)
Q Consensus 228 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 307 (773)
++|.+++ ++ +..+++|++|++++|++++. | ++.+++|++|++++|.+++ ++ +..+++|++|++++|...
T Consensus 93 s~N~l~~-~~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 93 DSNKLTN-LD---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CSSCCSC-CC---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCC
T ss_pred cCCCCce-ee---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcc
Confidence 8888774 43 33467788888888877753 3 6777778888888777773 43 334677777777777544
Q ss_pred CcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcccccc
Q 040297 308 GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387 (773)
Q Consensus 308 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 387 (773)
+.. .+..+++|++|++++|++++ +| ++.+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +.
T Consensus 162 ~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~ 230 (457)
T 3bz5_A 162 TKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT 230 (457)
T ss_dssp CCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred ccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc
Confidence 433 35566777777777777765 33 56667777777777777654 25666777777777777765 33 56
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEE
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 467 (773)
.+++|+.|++++|.+++..+. .++.|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|+
T Consensus 231 ~l~~L~~L~l~~N~l~~~~~~--~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ 292 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELD 292 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCCT--TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCC
T ss_pred ccCCCCEEEeeCCcCCCcCHH--HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEE
Confidence 666677777777766654321 2345555555443 23445555555444443 23445555555
Q ss_pred ccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 468 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
+++|...+.+|. ..++|+.|++++
T Consensus 293 Ls~n~~l~~l~~---~~~~L~~L~l~~----------------------------------------------------- 316 (457)
T 3bz5_A 293 VTHNTQLYLLDC---QAAGITELDLSQ----------------------------------------------------- 316 (457)
T ss_dssp CTTCTTCCEEEC---TTCCCSCCCCTT-----------------------------------------------------
T ss_pred CCCCcccceecc---CCCcceEechhh-----------------------------------------------------
Confidence 555544444332 222333333332
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
.++|+.|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.+
T Consensus 317 ------------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l 367 (457)
T 3bz5_A 317 ------------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNF 367 (457)
T ss_dssp ------------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSE
T ss_pred ------------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcE
Confidence 24789999999999974 3 8999999999999999996 35678889999999
Q ss_pred cccCCcccccCCCCCEEEccCCcccccCCCCC
Q 040297 628 HGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659 (773)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 659 (773)
.|. ..+..|..+++++|+++|.+|..+
T Consensus 368 ~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 368 EAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp EEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred Eec-----ceeeecCccccccCcEEEEcChhH
Confidence 987 345568889999999999999753
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.8e-36 Score=329.56 Aligned_cols=347 Identities=24% Similarity=0.323 Sum_probs=236.7
Q ss_pred cCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcE
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 273 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 273 (773)
.++++++|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 456788889988887653 3 4677888888888888887 4444 3447888888888888875544 788888888
Q ss_pred EEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc
Q 040297 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353 (773)
Q Consensus 274 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 353 (773)
|++++|.++ .++. +..+++|++|++++|.+.+.. .+..+++|++|+++ |.+.+.. .+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 888888887 4544 445778888888888777642 36677777777775 4444332 26677777777777777
Q ss_pred CCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhh
Q 040297 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433 (773)
Q Consensus 354 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 433 (773)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ . ..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-----------------------~--~~l 239 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-----------------------I--GTL 239 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-----------------------C--GGG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-----------------------c--hhh
Confidence 7643 235666777777777776665444 4556666666666665543 2 234
Q ss_pred cCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcc
Q 040297 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 513 (773)
..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------- 306 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------- 306 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-------
Confidence 556667777777776665433 5666777777777777764433 6677777777777777764322 11
Q ss_pred ccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCC
Q 040297 514 YHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 593 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 593 (773)
.+++|+.|++++|++++..| ++.+++|
T Consensus 307 ---------------------------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 307 ---------------------------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp ---------------------------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred ---------------------------------------------------CCCCCCEEECcCCcCCCchh--hccCccC
Confidence 13467777777777776554 6677778
Q ss_pred CeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccccc
Q 040297 594 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGK 654 (773)
Q Consensus 594 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 654 (773)
++|++++|.+++. ..++++++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8888888877754 357777888888888888877766 67777888888888877763
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-35 Score=327.92 Aligned_cols=347 Identities=27% Similarity=0.371 Sum_probs=267.9
Q ss_pred CCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCc
Q 040297 169 HQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 248 (773)
.+++++.|++.++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 4568999999999987 4664 4789999999999999987654 8899999999999999984 444 44589999
Q ss_pred EEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccc
Q 040297 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328 (773)
Q Consensus 249 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 328 (773)
+|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|+.|+++ |.+.+.. .+.++++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999986543 899999999999999998 5664 4569999999997 5555443 3889999999999999
Q ss_pred cCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCC
Q 040297 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 329 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
.+++. ..+..+++|++|++++|.+.+..| ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 99854 348899999999999999997665 77899999999999999854 357788899999998888765432
Q ss_pred CCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCC
Q 040297 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVR 488 (773)
Q Consensus 409 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 488 (773)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+
T Consensus 261 ------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 261 ------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp ------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred ------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3345556666666666554332 5556666666666666664332 56667777
Q ss_pred EEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccccccc
Q 040297 489 LIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTS 568 (773)
Q Consensus 489 ~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 568 (773)
.|++++|++++..| +. .+++
T Consensus 313 ~L~L~~n~l~~~~~--~~----------------------------------------------------------~l~~ 332 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VS----------------------------------------------------------SLTK 332 (466)
T ss_dssp EEECCSSCCSCCGG--GG----------------------------------------------------------GCTT
T ss_pred EEECcCCcCCCchh--hc----------------------------------------------------------cCcc
Confidence 77777777665433 11 1346
Q ss_pred ccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 569 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 569 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
|+.|++++|++++. ..++.+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 77777777777754 457788888888888888887766 78888888888888888763
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-37 Score=339.37 Aligned_cols=323 Identities=19% Similarity=0.160 Sum_probs=193.7
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (773)
+.++.+++.++ .+|..+ .+.++.|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56777888887 777654 35778888888888877777788888888888888888877777788888888888888
Q ss_pred CcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccch
Q 040297 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 352 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 430 (773)
|.+++..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 888766556677778888888888877776677777777777777777776655444333 4455555555555544444
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCc
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 510 (773)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------------------------ 225 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN------------------------ 225 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC------------------------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc------------------------
Confidence 44444444555555444444443444444444444444444444344333333334
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhcc
Q 040297 511 GEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 590 (773)
|+.|++++|++++..+..+..+
T Consensus 226 ----------------------------------------------------------L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 226 ----------------------------------------------------------LTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp ----------------------------------------------------------CSEEEEESSCCCSCCHHHHTTC
T ss_pred ----------------------------------------------------------ccEEECcCCcccccCHHHhcCc
Confidence 4455555555553222344555
Q ss_pred CCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSY 670 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l 670 (773)
++|++|+|++|.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+++++.+++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 55555555555555444444555555555555555555555555555555555555555555544444444455555555
Q ss_pred cCCCCCCCCC
Q 040297 671 EGNPFLCGWP 680 (773)
Q Consensus 671 ~~Np~lC~~~ 680 (773)
++||+.|+|.
T Consensus 328 ~~N~l~c~c~ 337 (477)
T 2id5_A 328 DSNPLACDCR 337 (477)
T ss_dssp CSSCEECSGG
T ss_pred cCCCccCccc
Confidence 5555555543
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=338.84 Aligned_cols=322 Identities=20% Similarity=0.159 Sum_probs=269.4
Q ss_pred CcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcc
Q 040297 247 LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLD 326 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 326 (773)
-+.++.+++.++ .+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 467889888887 566655 368999999999999 6655556679999999999999999989999999999999999
Q ss_pred cccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCC
Q 040297 327 GNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTL 406 (773)
Q Consensus 327 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 406 (773)
+|++++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 99999776677899999999999999999888889999999999999999999888889999999999999999998776
Q ss_pred CCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC
Q 040297 407 PSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK 485 (773)
Q Consensus 407 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 485 (773)
+..+. +++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 65444 88999999999999999999999999999999999998888887777777999999999999965556788888
Q ss_pred CCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccc
Q 040297 486 EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI 565 (773)
Q Consensus 486 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (773)
+|+.|++++|++++..+..+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------------------------- 270 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHE---------------------------------------------------------- 270 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTT----------------------------------------------------------
T ss_pred ccCeeECCCCcCCccChhhccc----------------------------------------------------------
Confidence 8888888888887544433322
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 34677777777777766677777777777777777777766666667777777777777776543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-34 Score=317.21 Aligned_cols=350 Identities=19% Similarity=0.174 Sum_probs=274.5
Q ss_pred hhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCC
Q 040297 192 VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 271 (773)
Q Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 271 (773)
++++++|++|++++|.+.+. | .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. + ++++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 36788999999999998875 4 68888999999999999884 54 34478999999999998864 3 8889999
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (773)
++|++++|.++ .+| +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.|++++
T Consensus 109 ~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999988 465 45588899999999998875 2677888999999988655454 477888899999999
Q ss_pred CcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchh
Q 040297 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLES 431 (773)
Q Consensus 352 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 431 (773)
|.+++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| ...+++|+.|++++|.+++..
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC--
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC--
Confidence 98886 34 77888899999999888864 37788888888888888887 34 445778888888888887764
Q ss_pred hhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcC
Q 040297 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLG 511 (773)
Q Consensus 432 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~ 511 (773)
...+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|..
T Consensus 250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~------- 305 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ------- 305 (457)
T ss_dssp -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT-------
T ss_pred -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC-------
Confidence 345677778877665 45667788888776666 467888889999988877665531
Q ss_pred ccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccC
Q 040297 512 EDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLT 591 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 591 (773)
...|+.|++++| +
T Consensus 306 ------------------------------------------------------~~~L~~L~l~~~-------------~ 318 (457)
T 3bz5_A 306 ------------------------------------------------------AAGITELDLSQN-------------P 318 (457)
T ss_dssp ------------------------------------------------------TCCCSCCCCTTC-------------T
T ss_pred ------------------------------------------------------CCcceEechhhc-------------c
Confidence 124555666555 6
Q ss_pred CCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCccc
Q 040297 592 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYE 671 (773)
Q Consensus 592 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~ 671 (773)
+|++|++++|++++. + ++++++|+.||+++|++++ ++.|..|++++|.++|. +++..+..++++
T Consensus 319 ~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 319 KLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp TCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred cCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence 899999999999984 4 8999999999999999986 24567778999999987 355677778888
Q ss_pred CCCCC
Q 040297 672 GNPFL 676 (773)
Q Consensus 672 ~Np~l 676 (773)
.|.+.
T Consensus 383 ~N~l~ 387 (457)
T 3bz5_A 383 NNSLT 387 (457)
T ss_dssp TTBEE
T ss_pred cCcEE
Confidence 88754
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-34 Score=313.72 Aligned_cols=333 Identities=20% Similarity=0.167 Sum_probs=151.6
Q ss_pred CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeee
Q 040297 269 KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 348 (773)
+++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34444444444444 44444444444444444444444444444444455555555555555444444444455555555
Q ss_pred CcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcccccc
Q 040297 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428 (773)
Q Consensus 349 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 428 (773)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. ...++.|+.+++++|.+++.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc
Confidence 5555554333333444555555555555554444444444555555555555444321 11123333444443333321
Q ss_pred chhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhcc
Q 040297 429 LESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYT 508 (773)
Q Consensus 429 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 508 (773)
...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~- 270 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK- 270 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred -----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-
Confidence 1123344444444444422 211 123444444444444432 23444444444444444444333333221
Q ss_pred CcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhh
Q 040297 509 SLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG 588 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 588 (773)
+++|+.|++++|++++ +|..+.
T Consensus 271 ---------------------------------------------------------l~~L~~L~L~~n~l~~-~~~~~~ 292 (390)
T 3o6n_A 271 ---------------------------------------------------------MQRLERLYISNNRLVA-LNLYGQ 292 (390)
T ss_dssp ---------------------------------------------------------CSSCCEEECCSSCCCE-EECSSS
T ss_pred ---------------------------------------------------------cccCCEEECCCCcCcc-cCcccC
Confidence 1244444444444442 333344
Q ss_pred ccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcC
Q 040297 589 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEED 668 (773)
Q Consensus 589 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~ 668 (773)
.+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. | +..+++|+.|++++|++.+.-.. ..+..+...
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~ 366 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARP 366 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTT
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhh
Confidence 4555555555555555 3444455555555555555555533 1 34455555566666555543221 223444445
Q ss_pred cccCCCCCCCC
Q 040297 669 SYEGNPFLCGW 679 (773)
Q Consensus 669 ~l~~Np~lC~~ 679 (773)
.+.+++..|.+
T Consensus 367 ~~~~~~~~c~~ 377 (390)
T 3o6n_A 367 AVDDADQHCKI 377 (390)
T ss_dssp TBCCCCSCCCT
T ss_pred cccccCceecc
Confidence 55566666654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-34 Score=326.21 Aligned_cols=335 Identities=18% Similarity=0.163 Sum_probs=202.1
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 323 (773)
+++++.+++++|.+....+..|..+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 346666666666666555555666666666666666665 3433333446666666666666666555555566666666
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66666665444444455666666666666665555555555666666666666555331 334455555555555443
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccC
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 483 (773)
+ . ...++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..
T Consensus 206 ~-----------------------l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 206 T-----------------------L-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp E-----------------------E-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGG
T ss_pred c-----------------------c-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--Chhhcc
Confidence 2 1 1223455555555555532 2111 2456666666666654 245566
Q ss_pred CCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccc
Q 040297 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG 563 (773)
Q Consensus 484 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (773)
+++|+.|++++|.+++..|..+..
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------- 276 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVK-------------------------------------------------------- 276 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCCCHHHhcC--------------------------------------------------------
Confidence 666666666666666555554433
Q ss_pred cccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.. +..+++|+.
T Consensus 277 --l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 277 --MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp --CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred --ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 2366666666666664 4555666777888888888877 56777777788888888888877543 556678888
Q ss_pred EEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 644 FKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 644 L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
|++++|++++..+. ..+..+....+.+++..|+.+
T Consensus 350 L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 350 LTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp EECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred EEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 88888888765432 345666667788899899753
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-34 Score=300.28 Aligned_cols=258 Identities=33% Similarity=0.538 Sum_probs=210.6
Q ss_pred CCCeeeCcCCcCCC--CcchhhcCCCCCcEEEccc-CcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEE
Q 040297 343 LLAGLYLSDNHLSG--RIPRWLGNLSALEDIRMSN-NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVH 419 (773)
Q Consensus 343 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 419 (773)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|+.|+++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls--------------------- 109 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT--------------------- 109 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE---------------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc---------------------
Confidence 45555555555554 4455555555555555553 55554555555555555555554
Q ss_pred CCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC-CCCEEEccCCcCC
Q 040297 420 LSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK-EVRLIDLSHNNLS 498 (773)
Q Consensus 420 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 498 (773)
+|.+++..|..+.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|+++
T Consensus 110 --~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 110 --HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp --EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred --CCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 4555556666777888999999999999988899999999999999999999988999999998 8999999999999
Q ss_pred CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCc
Q 040297 499 GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK 578 (773)
Q Consensus 499 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 578 (773)
+.+|..+.. + .|+.|++++|+
T Consensus 188 ~~~~~~~~~----------------------------------------------------------l-~L~~L~Ls~N~ 208 (313)
T 1ogq_A 188 GKIPPTFAN----------------------------------------------------------L-NLAFVDLSRNM 208 (313)
T ss_dssp EECCGGGGG----------------------------------------------------------C-CCSEEECCSSE
T ss_pred ccCChHHhC----------------------------------------------------------C-cccEEECcCCc
Confidence 888876653 2 38899999999
Q ss_pred CcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCC
Q 040297 579 LTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDR 658 (773)
Q Consensus 579 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 658 (773)
+++.+|..++.+++|++|+|++|.+++.+|. +..+++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999977776 889999999999999999999999999999999999999999999996
Q ss_pred CcccccCCcCcccCCCCCCCCCCCCCC
Q 040297 659 VAQFSTFEEDSYEGNPFLCGWPLSKSC 685 (773)
Q Consensus 659 ~~~~~~l~~~~l~~Np~lC~~~l~~~c 685 (773)
.++++++.+++.+||++||.|+. .|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred -ccccccChHHhcCCCCccCCCCC-CC
Confidence 88999999999999999998775 46
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-33 Score=300.00 Aligned_cols=312 Identities=21% Similarity=0.246 Sum_probs=203.4
Q ss_pred CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 219 YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
++++++|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 455666666666665 555555555666666666666666555556666666666666666666 343333344566666
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 66666666554444445566666666666666555555555666666666666655532 133445555555555554
Q ss_pred CCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh
Q 040297 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458 (773)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 458 (773)
.+ +...++|+.|++++|. +...... ..++|+.|++++|.+++. .++.
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~-----------------------l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNS-----------------------INVVRGP---VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp SE-----EECCSSCSEEECCSSC-----------------------CCEEECC---CCSSCCEEECCSSCCCCC--GGGG
T ss_pred cc-----cCCCCcceEEECCCCe-----------------------eeecccc---ccccccEEECCCCCCccc--HHHc
Confidence 42 1222344444544444 4333221 235677788888877753 4677
Q ss_pred cCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCC
Q 040297 459 ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPT 538 (773)
Q Consensus 459 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (773)
.+++|++|++++|.+++..|..+..+++|+.|++++|++++. |..+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~--------------------------------- 291 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG--------------------------------- 291 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSS---------------------------------
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cccc---------------------------------
Confidence 788888888888888877788888888888888888888642 2211
Q ss_pred CCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCC
Q 040297 539 QSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE 618 (773)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 618 (773)
..+++|+.|++++|+++ .+|..++.+++|++|+|++|.+++. | +..+++|+
T Consensus 292 -------------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 292 -------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp -------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred -------------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 11458899999999998 6777888999999999999999854 4 77889999
Q ss_pred eeeCccccCcccC
Q 040297 619 SLDLSYNLLHGKI 631 (773)
Q Consensus 619 ~LdLs~N~l~~~~ 631 (773)
.|++++|++.+..
T Consensus 343 ~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 343 NLTLSHNDWDCNS 355 (390)
T ss_dssp EEECCSSCEEHHH
T ss_pred EEEcCCCCccchh
Confidence 9999999998643
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-32 Score=290.89 Aligned_cols=304 Identities=23% Similarity=0.314 Sum_probs=170.7
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 323 (773)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4566667766666653 23 3666666666666666666 4443 34466666666666666543 235556666666
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|.+++. +. +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 6666665532 22 5555566666666554433322 25555555555555555543322 445555555555555443
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccC
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 483 (773)
+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 191 -----------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 191 -----------------------DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp -----------------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred -----------------------cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 3222 4455556666666666554332 5556666666666666653322 556
Q ss_pred CCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccc
Q 040297 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG 563 (773)
Q Consensus 484 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (773)
+++|+.|++++|.+++. + .+.
T Consensus 242 l~~L~~L~l~~n~l~~~-~-~~~--------------------------------------------------------- 262 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-N-AVK--------------------------------------------------------- 262 (347)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGT---------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCC-h-hHh---------------------------------------------------------
Confidence 66666666666665531 1 111
Q ss_pred cccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
.+++|+.|++++|++++. +.+..+++|++|++++|.+++..|..|+++++|+.|++++|++++..| +..+++|+.
T Consensus 263 -~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 263 -DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp -TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred -cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 133566666666666642 345666666777777776666666666666677777777776665555 566666677
Q ss_pred EEccCCccc
Q 040297 644 FKVAYNNLS 652 (773)
Q Consensus 644 L~ls~N~l~ 652 (773)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 777666654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.4e-32 Score=287.88 Aligned_cols=308 Identities=25% Similarity=0.347 Sum_probs=244.2
Q ss_pred CccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCC
Q 040297 215 PIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294 (773)
Q Consensus 215 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 294 (773)
.+..+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence 4557899999999999998 5664 3448999999999999986443 999999999999999998 5663 55699
Q ss_pred CccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcc
Q 040297 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374 (773)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 374 (773)
+|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 99999999999997654 8899999999999997664444 48999999999999999986544 8899999999999
Q ss_pred cCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc
Q 040297 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP 454 (773)
Q Consensus 375 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 454 (773)
+|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|++++..+
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP-------------------------VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch-------------------------hhcCCcCCEEEccCCccCCCcc
Confidence 999985443 7788888888888887754322 4455666777777776664333
Q ss_pred hhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCC
Q 040297 455 NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSP 534 (773)
Q Consensus 455 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (773)
+..+++|++|++++|.+++. +.+..+++|+.|++++|++++. + .+.
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~---------------------------- 284 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN---------------------------- 284 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG----------------------------
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc----------------------------
Confidence 66677777777777777643 3577788888888888877643 1 111
Q ss_pred CCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccC
Q 040297 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614 (773)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 614 (773)
.+++|+.|++++|++++..|..++.+++|++|++++|.+++..| ++.+
T Consensus 285 ------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l 332 (347)
T 4fmz_A 285 ------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332 (347)
T ss_dssp ------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred ------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence 14588889999999988888889999999999999999997666 8889
Q ss_pred ccCCeeeCccccCc
Q 040297 615 KQIESLDLSYNLLH 628 (773)
Q Consensus 615 ~~L~~LdLs~N~l~ 628 (773)
++|+.||+++|+++
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 99999999999875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-33 Score=318.27 Aligned_cols=313 Identities=21% Similarity=0.219 Sum_probs=257.8
Q ss_pred CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCee
Q 040297 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 347 (773)
+++++.+++++|.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 577888999888887 7888877778888888888888888777788888888888888888887777777888888888
Q ss_pred eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccc
Q 040297 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG 427 (773)
Q Consensus 348 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 427 (773)
++++|.+++..+..|+.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------- 186 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------------------- 186 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----------------------
Confidence 8888888866555667788888888888888777777777777777777777766532
Q ss_pred cchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhc
Q 040297 428 QLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVY 507 (773)
Q Consensus 428 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 507 (773)
. +..+++|+.|++++|.+++ +...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..
T Consensus 187 -~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 187 -D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp -C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGG
T ss_pred -C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhcc
Confidence 1 3345789999999998874 33457899999999999854332 2 36899999999999862 32322
Q ss_pred cCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhh
Q 040297 508 TSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 587 (773)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 587 (773)
+++|+.|+|++|.+++.+|..|
T Consensus 253 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 253 ----------------------------------------------------------YPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp ----------------------------------------------------------CTTCSEEECCSSCCCEEESGGG
T ss_pred ----------------------------------------------------------CCCCCEEECCCCccCCCCHHHh
Confidence 4589999999999999999999
Q ss_pred hccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCc
Q 040297 588 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEE 667 (773)
Q Consensus 588 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~ 667 (773)
+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.. +..+++++.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 999999999999999995 6777888999999999999999 67888899999999999999998764 457789999
Q ss_pred CcccCCCCCCCCC
Q 040297 668 DSYEGNPFLCGWP 680 (773)
Q Consensus 668 ~~l~~Np~lC~~~ 680 (773)
+++++|||.|+|.
T Consensus 350 L~l~~N~~~~~~~ 362 (597)
T 3oja_B 350 LTLSHNDWDCNSL 362 (597)
T ss_dssp EECCSSCEEHHHH
T ss_pred EEeeCCCCCChhH
Confidence 9999999999874
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.4e-34 Score=318.90 Aligned_cols=362 Identities=18% Similarity=0.142 Sum_probs=199.6
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCc----cCchhhhCCCCCcEEEeecccCCCccchhHhhcCC-
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISYNQLTGEIPERMATGCF- 294 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~- 294 (773)
++|++||+++|.++......++..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..++..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567777777777633333434556788888888887764 34566777788888888888776444555555455
Q ss_pred ---CccEEEcccCcCCC----cCcccccCCCCCcEEEcccccCCcccccccc-----CCCCCCeeeCcCCcCCCCc----
Q 040297 295 ---LLEILALSNNNLQG----HIFSKKFNLTNLMRLQLDGNNFTGEISDSLS-----NCRLLAGLYLSDNHLSGRI---- 358 (773)
Q Consensus 295 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~---- 358 (773)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777663 3355566677777777777776543333222 2345777777776666432
Q ss_pred chhhcCCCCCcEEEcccCcCCCCcccccc-----CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhh
Q 040297 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFC-----QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433 (773)
Q Consensus 359 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 433 (773)
+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++.... .++..+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l 223 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCGIV 223 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHHHH
Confidence 34445556666666666665543333332 234555555555554432100 123344
Q ss_pred cCCCCeeEEeCCCCcccccc-----chhhhcCCCCcEEEccCcccccc----CcccccCCCCCCEEEccCCcCCCcCcch
Q 040297 434 HDSPYLVTLDLSYNRFHGSI-----PNWINILPQLSSLLLGNNYIEGE----IPVQLCELKEVRLIDLSHNNLSGYIPAC 504 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 504 (773)
..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 44555555555555554321 11122345555555555555532 3444445555666666665554433333
Q ss_pred hhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc--
Q 040297 505 LVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE-- 582 (773)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-- 582 (773)
+...-. ...++|+.|++++|.+++.
T Consensus 304 l~~~l~-----------------------------------------------------~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 304 LCETLL-----------------------------------------------------EPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp HHHHHT-----------------------------------------------------STTCCCCEEECTTSCCBGGGH
T ss_pred HHHHhc-----------------------------------------------------cCCccceeeEcCCCCCchHHH
Confidence 221100 0012555666666665543
Q ss_pred --CChhhhccCCCCeEeCCCCcCCCCCcccccc-----CccCCeeeCccccCcc----cCCcccccCCCCCEEEccCCcc
Q 040297 583 --IPTQIGYLTRIHALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLHG----KIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 583 --~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~~----~~p~~l~~l~~L~~L~ls~N~l 651 (773)
++..+..+++|++|+|++|.+++..+..+.. .++|+.|+|++|++++ .+|..+..+++|++|++++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 3444555566666666666665444433332 4566666666666654 5555666666666666666666
Q ss_pred cc
Q 040297 652 SG 653 (773)
Q Consensus 652 ~~ 653 (773)
++
T Consensus 411 ~~ 412 (461)
T 1z7x_W 411 GD 412 (461)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=8e-34 Score=314.64 Aligned_cols=313 Identities=17% Similarity=0.153 Sum_probs=180.4
Q ss_pred CCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccC----CccCccCCCCcCEEEccCCcCccCCchhHhhCCC-
Q 040297 171 HDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGS----FRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP- 245 (773)
Q Consensus 171 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~- 245 (773)
++|++|++++++++......++..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34677778777776554444457788888888888887642 3455667788888888888887555555665565
Q ss_pred ---CCcEEEccCCccCc----cCchhhhCCCCCcEEEeecccCCCccchhHhhc----CCCccEEEcccCcCCCcC----
Q 040297 246 ---GLMDLNLSRNAFNG----SIPSSFADMKMLERLDISYNQLTGEIPERMATG----CFLLEILALSNNNLQGHI---- 310 (773)
Q Consensus 246 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~---- 310 (773)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 457888899999999999998874444433332 345777777777666532
Q ss_pred cccccCCCCCcEEEcccccCCcccccccc-----CCCCCCeeeCcCCcCCCC----cchhhcCCCCCcEEEcccCcCCCC
Q 040297 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLS-----NCRLLAGLYLSDNHLSGR----IPRWLGNLSALEDIRMSNNNLEGP 381 (773)
Q Consensus 311 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 381 (773)
+..+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23334455666666666655433222222 133555555555555432 233344444444444444444321
Q ss_pred ccccccCCCCCcEEEccCCCCCCCCCCCC-CCCceeEEECCCcccccc----chhhhcCCCCeeEEeCCCCccccccchh
Q 040297 382 IPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHLSKNKIEGQ----LESIIHDSPYLVTLDLSYNRFHGSIPNW 456 (773)
Q Consensus 382 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 456 (773)
....+. +..+ .++.|+.|++++|.++.. ++..+..+++|++|++++|.+++..+..
T Consensus 243 ~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 243 GMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 111000 0001 123444444444444432 3444555666777777777665443333
Q ss_pred hhc-----CCCCcEEEccCcccccc----CcccccCCCCCCEEEccCCcCCCcCc
Q 040297 457 INI-----LPQLSSLLLGNNYIEGE----IPVQLCELKEVRLIDLSHNNLSGYIP 502 (773)
Q Consensus 457 ~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p 502 (773)
+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 322 24666666666666543 33444555666666666666554333
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.4e-30 Score=272.90 Aligned_cols=288 Identities=17% Similarity=0.176 Sum_probs=196.8
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
+++.++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666666666666 3454443 567777777777776655567777777777777777776667777777777777777
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccc--ccchhhhcCCCCcEEEccCcccccc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG--SIPNWINILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 476 (773)
+|.++......+ ++|+.|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 777764333222 577788888888877777778888888888888887753 556677778888888888888773
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
+|..+. ++|+.|++++|++++..|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------- 214 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKG------------------------------------------------- 214 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTT-------------------------------------------------
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence 444332 67777777777777655554432
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+++|+.|++++|++++..+..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus 215 ---------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 215 ---------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp ---------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ---------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 236777777777777666667777777777777777777 6677777777777777777777766666554
Q ss_pred cC------CCCCEEEccCCcccc--cCCCCCcccccCCcCcccCC
Q 040297 637 VL------NTLAVFKVAYNNLSG--KIPDRVAQFSTFEEDSYEGN 673 (773)
Q Consensus 637 ~l------~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~l~~N 673 (773)
.. ..|+.+++++|++.. ..|..+..+.+++.+++++|
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 32 567777777777643 34444555566666666665
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.2e-32 Score=283.30 Aligned_cols=181 Identities=30% Similarity=0.438 Sum_probs=132.0
Q ss_pred CCCcEEEcccccCCc--cccccccCCCCCCeeeCcC-CcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcE
Q 040297 318 TNLMRLQLDGNNFTG--EISDSLSNCRLLAGLYLSD-NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTI 394 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 394 (773)
.++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..|+.+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8999999999999999995 9999999999999999999999999999889999999999999
Q ss_pred EEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCC-CeeEEeCCCCccccccchhhhcCCCCcEEEccCcc
Q 040297 395 LDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSP-YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNY 472 (773)
Q Consensus 395 L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 472 (773)
|++++|.+.+.+|..+. +++|+.|++++|.+++..|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999888766655433 55555555555555555555555554 555555555555555555555544 5555555555
Q ss_pred ccccCcccccCCCCCCEEEccCCcCCC
Q 040297 473 IEGEIPVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 473 l~~~~~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
+++..|..+..+++|+.|++++|++++
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee
Confidence 555555555555555555555555443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.4e-30 Score=272.89 Aligned_cols=290 Identities=21% Similarity=0.268 Sum_probs=165.3
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (773)
++.++++++.++ .+|..+ .+.++.|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|+++
T Consensus 33 l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 444444444444 344322 2344555555555554444445555555555555555554445555555555555555
Q ss_pred CCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccch
Q 040297 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 351 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 430 (773)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~ 164 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIEN 164 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCT
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcCh
Confidence 55554 2333222 4555555555555554444555555555555555544310 1223
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCc
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 510 (773)
..+.++++|++|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--- 238 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--- 238 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG---
T ss_pred hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC---
Confidence 344455555555665555552 333222 56666666666666665666666677777777777666544433332
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhcc
Q 040297 511 GEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 590 (773)
+++|+.|++++|+++ .+|..+..+
T Consensus 239 -------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 239 -------------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp -------------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTC
T ss_pred -------------------------------------------------------CCCCCEEECCCCcCc-cCChhhccC
Confidence 236777777777777 667777777
Q ss_pred CCCCeEeCCCCcCCCCCcccccc------CccCCeeeCccccCcc--cCCcccccCCCCCEEEccCCc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSN------LKQIESLDLSYNLLHG--KIPSQLTVLNTLAVFKVAYNN 650 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 650 (773)
++|++|++++|.+++..+..|.. .+.|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 78888888888887666666643 3677788888888763 556777778888888888774
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=275.23 Aligned_cols=287 Identities=16% Similarity=0.202 Sum_probs=142.8
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
+++.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444555554444 3333332 345555555555554444445555555555555555554445555555555555555
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccc--ccchhhhcCCCCcEEEccCcccccc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG--SIPNWINILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 476 (773)
+|.+....+..+ ++|++|++++|.+.+..+..+.++++|++|++++|.++. ..+..+..+ +|+.|++++|++++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 555543222221 455555555555555555555555556666666655542 334444444 55555555555553
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
+|..+. ++|+.|++++|.+++..+..+..
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------------------------------------------- 215 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------------------------------------------- 215 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------------------------------------------
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence 333222 45555555555555433332221
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+++|+.|++++|++++..+..++.+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus 216 ---------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 216 ---------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ---------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ---------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 224555555555555544445555555555555555555 4555555555555555555555554444443
Q ss_pred cC------CCCCEEEccCCccc--ccCCCCCcccccCCcCcccCC
Q 040297 637 VL------NTLAVFKVAYNNLS--GKIPDRVAQFSTFEEDSYEGN 673 (773)
Q Consensus 637 ~l------~~L~~L~ls~N~l~--~~~p~~~~~~~~l~~~~l~~N 673 (773)
.. ..|+.|++++|++. +..|..+..++.++.+++++|
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 32 34555555555554 344444444555555555544
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-30 Score=274.89 Aligned_cols=289 Identities=22% Similarity=0.287 Sum_probs=145.8
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (773)
++.++++++.++ .+|..+ .++++.|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 445555555544 444332 2345555555555554444445555555555555555554445555555555555555
Q ss_pred CCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccch
Q 040297 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 351 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 430 (773)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~ 166 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------GFEP 166 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------GSCT
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------CCCc
Confidence 55555 2333222 4555555555555544444455555555555555544310 1111
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCc
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 510 (773)
..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--- 239 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--- 239 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG---
T ss_pred ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC---
Confidence 222222 34444444444442 222221 45555555555555444455555555555555555555443333322
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhcc
Q 040297 511 GEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 590 (773)
+++|+.|++++|+++ .+|..+..+
T Consensus 240 -------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 240 -------------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred -------------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcC
Confidence 235556666666665 555556666
Q ss_pred CCCCeEeCCCCcCCCCCccccccC------ccCCeeeCccccCc--ccCCcccccCCCCCEEEccCCc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNL------KQIESLDLSYNLLH--GKIPSQLTVLNTLAVFKVAYNN 650 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 650 (773)
++|++|++++|.+++..+..|... .+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 666666666666665555555432 45666666666665 4555666666666666666653
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.9e-31 Score=300.25 Aligned_cols=202 Identities=15% Similarity=0.078 Sum_probs=81.6
Q ss_pred cCCCCCEEEccCCcCccCCccCccC-CCC-cCEEEccCCc-CccCCchhHhhCCCCCcEEEccCCccCcc----Cchhhh
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHS-YQK-LAILDVSKNF-FQGHIPVEIGTYLPGLMDLNLSRNAFNGS----IPSSFA 266 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~ 266 (773)
++++|++|+|++|.+.+..+..+.. +++ |++|++++|. +.......+...+++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4455555555555444333333322 222 5555555543 11000111112245555555555554433 222334
Q ss_pred CCCCCcEEEeecccCCC----ccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCC---cccccccc
Q 040297 267 DMKMLERLDISYNQLTG----EIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT---GEISDSLS 339 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~ 339 (773)
.+++|++|++++|.+++ .++. ++..+++|+.|++++|.+.+ .+..+..+++|++|+++..... +..+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 44555555555554431 1111 12234555555555554443 2234444455555555432111 11222334
Q ss_pred CCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcc-ccccCCCCCcEEEcc
Q 040297 340 NCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP-IEFCQLDYLTILDLS 398 (773)
Q Consensus 340 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 398 (773)
.+++|+.|+++++... .+|..+..+++|++|++++|.+.+... ..+..+++|+.|+++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 4444444444443222 334444444444444444444332221 112344444444444
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.9e-30 Score=295.63 Aligned_cols=411 Identities=13% Similarity=0.048 Sum_probs=290.9
Q ss_pred chhHhhcCCCCCEEEccCCcC---ccCCccCc------------cCCCCcCEEEccCCcCccCCchhHhhCCCC-CcEEE
Q 040297 188 PNWLVENNTNLETLLLANNSL---FGSFRMPI------------HSYQKLAILDVSKNFFQGHIPVEIGTYLPG-LMDLN 251 (773)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~ 251 (773)
|..++..+++|++|+++++.. .+.+|..+ ..+++|++|++++|.+++..+..+...++. |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 444556677777777766432 12222222 267899999999998876666655554455 99999
Q ss_pred ccCCc-cCc-cCchhhhCCCCCcEEEeecccCCCccch---hHhhcCCCccEEEcccCcCCCc----CcccccCCCCCcE
Q 040297 252 LSRNA-FNG-SIPSSFADMKMLERLDISYNQLTGEIPE---RMATGCFLLEILALSNNNLQGH----IFSKKFNLTNLMR 322 (773)
Q Consensus 252 L~~n~-l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 322 (773)
+++|. ++. .++.....+++|++|++++|.+++.-+. .+...+++|++|++++|.+++. .+..+.++++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99887 221 1223345789999999999988755221 2345689999999999998733 3344567899999
Q ss_pred EEcccccCCccccccccCCCCCCeeeCcCCcCC---CCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccC
Q 040297 323 LQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS---GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399 (773)
Q Consensus 323 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 399 (773)
|++++|.+.+ ++..+..+++|+.|+++..... ...+..+..+++|+.++++++.. +.+|..+..+++|+.|++++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence 9999998885 6778888999999999854322 23345667788999999988643 35677778889999999999
Q ss_pred CCCCCCCC-C-CCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCC-----------Cccccc-cchhhhcCCCCcE
Q 040297 400 NAIFGTLP-S-CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSY-----------NRFHGS-IPNWINILPQLSS 465 (773)
Q Consensus 400 n~l~~~~~-~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~-----------n~l~~~-~~~~~~~l~~L~~ 465 (773)
|.+++... . ...+++|+.|+++++...+..+.....+++|++|++++ |.+++. ++.....+++|+.
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 98654332 1 23478899999984433344455567788999999993 566643 2333456899999
Q ss_pred EEccCccccccCcccccC-CCCCCEEEcc----CCcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCCCCCCC
Q 040297 466 LLLGNNYIEGEIPVQLCE-LKEVRLIDLS----HNNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQ 539 (773)
Q Consensus 466 L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (773)
|++..|.+++..+..+.. +++|+.|+++ .|.+++.... .+...
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~------------------------------- 431 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL------------------------------- 431 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-------------------------------
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-------------------------------
Confidence 999888888776666665 8899999996 5666643111 01000
Q ss_pred CCCCCCCcceEEEEecCccccccccccccccEEecccC--cCcccCChhhhc-cCCCCeEeCCCCcCCC-CCccccccCc
Q 040297 540 SGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN--KLTGEIPTQIGY-LTRIHALNLSHNNLTG-TIPTTFSNLK 615 (773)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 615 (773)
...+++|+.|++++| .+++..+..++. +++|++|+|++|.+++ .++..+..++
T Consensus 432 -----------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 432 -----------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp -----------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred -----------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 012468999999854 377666666654 8899999999999986 3455668899
Q ss_pred cCCeeeCccccCccc-CCcccccCCCCCEEEccCCccccc
Q 040297 616 QIESLDLSYNLLHGK-IPSQLTVLNTLAVFKVAYNNLSGK 654 (773)
Q Consensus 616 ~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~~~ 654 (773)
+|+.|+|++|++++. ++.....+++|+.|++++|+++..
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999999998755 455557899999999999998754
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=267.24 Aligned_cols=232 Identities=24% Similarity=0.289 Sum_probs=174.2
Q ss_pred CCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEcc
Q 040297 391 YLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG 469 (773)
Q Consensus 391 ~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 469 (773)
+++.|++++|.+.+..+..+. +++|+.|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 344444444444433333222 4445555555555555556667777888888888888876666677778888888888
Q ss_pred CccccccCcccccCCCCCCEEEccCCcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 470 NNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 470 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
+|++++..+..+..+++|+.|++++|+..+.++. .+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------------------------------------------ 182 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE------------------------------------------ 182 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------------------------------------------
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh------------------------------------------
Confidence 8888866666788888888888887554444332 221
Q ss_pred eEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.+++|++|++++|+++ .+| .+..+++|++|+|++|.+++..|..|.++++|+.|+|++|+++
T Consensus 183 ----------------~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 183 ----------------GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp ----------------TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ----------------cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 1457888888888888 455 4788889999999999999888899999999999999999999
Q ss_pred ccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 629 GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 629 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
+..|..|..+++|+.|++++|++++..+..+..+..++.+++++|||.|+|.+.
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 888989999999999999999999888888888899999999999999999653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.7e-29 Score=263.12 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=163.3
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
+.....+++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|+.|++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 33444555555555 3444333 35566666666555444445555555555555555555444444555555555555
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEEccCc-cccc
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLLLGNN-YIEG 475 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~ 475 (773)
++|. +++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+
T Consensus 108 s~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 108 SYNY-----------------------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CSSC-----------------------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCc-----------------------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 5554 444444555666666666666666663322 35566666666666666 3554
Q ss_pred cCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEec
Q 040297 476 EIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTK 555 (773)
Q Consensus 476 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (773)
..+..+..+++|+.|++++|++++..|..+..
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------------------------------ 196 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKS------------------------------------------------ 196 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTT------------------------------------------------
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhc------------------------------------------------
Confidence 44556666666666666666666554544332
Q ss_pred CccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccc---cCccCCeeeCccccCcc---
Q 040297 556 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS---NLKQIESLDLSYNLLHG--- 629 (773)
Q Consensus 556 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~LdLs~N~l~~--- 629 (773)
+++|++|++++|+++...+..+..+++|++|++++|.+++..+..+. ..+.++.++++++.+++
T Consensus 197 ----------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 197 ----------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp ----------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred ----------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 23666666666666532223344566677777777776655444332 34556667777776665
Q ss_pred -cCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 630 -KIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 630 -~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
.+|+.+..+++|+.|++++|+++...+..++.+++++.+++++||+.|+|+
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 356667777777777777777774433334677777777788888888775
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.7e-28 Score=265.57 Aligned_cols=253 Identities=21% Similarity=0.238 Sum_probs=177.7
Q ss_pred CCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCc
Q 040297 344 LAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423 (773)
Q Consensus 344 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 423 (773)
...++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--------------------- 111 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--------------------- 111 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---------------------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc---------------------
Confidence 345555555555 3443332 4556666666666555555555555555555555554
Q ss_pred cccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcc
Q 040297 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA 503 (773)
Q Consensus 424 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 503 (773)
++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|+..+.++.
T Consensus 112 --~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 112 --RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp --CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred --CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 444455566666777777777777755555666777777777777777765556677777777777777544333332
Q ss_pred h-hhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc
Q 040297 504 C-LVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 582 (773)
Q Consensus 504 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 582 (773)
. +. .+++|+.|+|++|++++
T Consensus 190 ~~~~----------------------------------------------------------~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 190 GAFE----------------------------------------------------------GLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp TTTT----------------------------------------------------------TCTTCCEEECTTSCCSS-
T ss_pred hhcc----------------------------------------------------------CCCCCCEEECCCCcccc-
Confidence 1 11 13477788888888874
Q ss_pred CChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCccc
Q 040297 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662 (773)
Q Consensus 583 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 662 (773)
+| .+..+++|++|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 34 47778888888888888888888888888888899999888888888888888889999999998888888877888
Q ss_pred ccCCcCcccCCCCCCCCCCC
Q 040297 663 STFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 663 ~~l~~~~l~~Np~lC~~~l~ 682 (773)
++++.+++++|||.|+|.+.
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECCSSCEECSTTTH
T ss_pred cCCCEEEccCCCcCCCCCch
Confidence 88888999999999998753
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=259.09 Aligned_cols=283 Identities=20% Similarity=0.183 Sum_probs=175.7
Q ss_pred CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCee
Q 040297 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 347 (773)
|+.....+.+++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|++++..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 445555677777777 677644 3467777777777777666677777888888888888877667777778888888
Q ss_pred eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcc-ccccCCCCCcEEEccCCC-CCCCCCCCCCCCceeEEECCCccc
Q 040297 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP-IEFCQLDYLTILDLSNNA-IFGTLPSCFSPAFIEQVHLSKNKI 425 (773)
Q Consensus 348 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~n~l 425 (773)
++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|. +.+..+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~------------------ 167 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR------------------ 167 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH------------------
Confidence 888888876555567777888888888887774433 356777777777777773 433323
Q ss_pred cccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchh
Q 040297 426 EGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505 (773)
Q Consensus 426 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 505 (773)
..+.++++|++|++++|++++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+
T Consensus 168 -----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 168 -----KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp -----TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred -----HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 334444555555555555554445555555555555555555543222223345555566666665554332221
Q ss_pred hccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc----
Q 040297 506 VYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG---- 581 (773)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---- 581 (773)
... .....++.++++++.+++
T Consensus 243 ~~~-------------------------------------------------------~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 243 STG-------------------------------------------------------ETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp -----------------------------------------------------------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccc-------------------------------------------------------cccchhhccccccccccCcchh
Confidence 110 012245556666666554
Q ss_pred cCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCC
Q 040297 582 EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 582 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 632 (773)
.+|..+..+++|++|+|++|+++...+..|+++++|+.|+|++|++.+..|
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 456677777888888888888873333335777777777777777776544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5e-28 Score=252.22 Aligned_cols=254 Identities=21% Similarity=0.256 Sum_probs=175.7
Q ss_pred CeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcc
Q 040297 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNK 424 (773)
Q Consensus 345 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~ 424 (773)
+.++++++.++ .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+...
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence 34566666555 3343322 4566666666666543333455556666666655554311
Q ss_pred ccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCCCCCCEEEccCCcCCCcCcc
Q 040297 425 IEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPA 503 (773)
Q Consensus 425 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~ 503 (773)
+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+.
T Consensus 68 --~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 68 --GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp --EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred --cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 112344556677777777777776 355556777777777777777775544 4677777888888888877655554
Q ss_pred hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc-c
Q 040297 504 CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-E 582 (773)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 582 (773)
.+.. +++|++|++++|.+++ .
T Consensus 145 ~~~~----------------------------------------------------------l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 145 IFNG----------------------------------------------------------LSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp TTTT----------------------------------------------------------CTTCCEEECTTCEEGGGE
T ss_pred hccc----------------------------------------------------------CcCCCEEECCCCcccccc
Confidence 4332 3477788888888775 5
Q ss_pred CChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCccc
Q 040297 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662 (773)
Q Consensus 583 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 662 (773)
+|..+..+++|++|+|++|.+++..|..|+.+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 67778888888888888888887778888888888888888888887777778888888888888888888888777776
Q ss_pred -ccCCcCcccCCCCCCCCCC
Q 040297 663 -STFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 663 -~~l~~~~l~~Np~lC~~~l 681 (773)
.+++.+++++||+.|+|..
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CTTCCEEECTTCCEECSGGG
T ss_pred hccCCEEEccCCCeecccCh
Confidence 4788888888888888764
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.1e-28 Score=251.10 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=72.1
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCC-CCCEEE
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLN-TLAVFK 645 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ 645 (773)
++|+.|++++|++++..|..++.+++|++|+|++|.+++..+..|..+++|+.|||++|++++.+|..+..++ +|++|+
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 3566666666666655566677777777777777777766666677777777777777777777777777763 777777
Q ss_pred ccCCcccccCCC--CCcccccCCcCcccCCCCCCCCC
Q 040297 646 VAYNNLSGKIPD--RVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 646 ls~N~l~~~~p~--~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+++|++++..+. ....+...+......+...|..|
T Consensus 255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred ccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 777777654321 01112233344445566666543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.6e-27 Score=242.20 Aligned_cols=229 Identities=19% Similarity=0.190 Sum_probs=156.7
Q ss_pred cEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCcc
Q 040297 393 TILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNY 472 (773)
Q Consensus 393 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 472 (773)
+.++.+++.++..+... ++.++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45555555554332211 3466666666666666666666777777777777777776666667777777777777776
Q ss_pred -ccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEE
Q 040297 473 -IEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQ 551 (773)
Q Consensus 473 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (773)
+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------- 127 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-------------------------------------------- 127 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------------------------------
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC--------------------------------------------
Confidence 66555666777777777777777776554443332
Q ss_pred EEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccC
Q 040297 552 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 631 (773)
Q Consensus 552 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 631 (773)
+++|++|++++|++++..+..++.+++|++|+|++|.+++..+..|..+++|+.|++++|++++..
T Consensus 128 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 128 --------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 346777777777777655566777777777777777777666666777777777777777777777
Q ss_pred CcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 632 PSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 632 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
|..+..+++|+.|++++|++++..+..+..++.++.+++++||+.|+|+.
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 77777777777777777777776665566677777777777777777764
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.2e-26 Score=239.05 Aligned_cols=226 Identities=22% Similarity=0.171 Sum_probs=149.9
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (773)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555555 455432 34566666666666655555566666666666666666655566666666666666666
Q ss_pred Cc-CCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccc
Q 040297 352 NH-LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQL 429 (773)
Q Consensus 352 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~ 429 (773)
|. +....|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 5555456666666666666666666665566666666677777766666655554433 566666666666666666
Q ss_pred hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcC
Q 040297 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYI 501 (773)
Q Consensus 430 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 501 (773)
+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 666777778888888888887777777777888888888888887666666777888888888888776543
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=7e-29 Score=284.27 Aligned_cols=396 Identities=17% Similarity=0.129 Sum_probs=197.3
Q ss_pred hcCCCCCEEEccCCcCccCCccCcc-CCCCcCEEEccCC-cCccCCchhHhhCCCCCcEEEccCCccCccCchhhh----
Q 040297 193 ENNTNLETLLLANNSLFGSFRMPIH-SYQKLAILDVSKN-FFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA---- 266 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~---- 266 (773)
..+++|++|+|++|.+.+..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4566677777777666554444443 4667777777766 333221223333366777777777766554443333
Q ss_pred CCCCCcEEEeeccc--CCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccc-------cCCcccccc
Q 040297 267 DMKMLERLDISYNQ--LTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN-------NFTGEISDS 337 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~ 337 (773)
.+++|++|++++|. +.......+...+++|++|++++|...+..+..+..+++|++|+++.+ .+.+ ++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 45567777776665 221111222233566777777666222224445556666666664433 2222 2334
Q ss_pred ccCCCCCCee-eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccc-cccCCCCCcEEEccCCCCCCC-CCCCC-CCC
Q 040297 338 LSNCRLLAGL-YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI-EFCQLDYLTILDLSNNAIFGT-LPSCF-SPA 413 (773)
Q Consensus 338 l~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~ 413 (773)
+.++++|+.| .+..... +.++..+..+++|+.|++++|.+.+.... .+..+++|+.|++++| +... ++... .++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 5566666666 3332221 13333344456666666666664432211 1345566666666655 2211 11111 134
Q ss_pred ceeEEEC---------CCccccccchhhh-cCCCCeeEEeCCCCccccccchhhh-cCCCCcEEEcc--C----cccccc
Q 040297 414 FIEQVHL---------SKNKIEGQLESII-HDSPYLVTLDLSYNRFHGSIPNWIN-ILPQLSSLLLG--N----NYIEGE 476 (773)
Q Consensus 414 ~L~~L~l---------~~n~l~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~ 476 (773)
+|+.|++ ..+.+++.....+ .++++|++|+++.|.+++..+..+. .+++|+.|+++ + +.+++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 4555554 2233333222222 2366666666666666654444443 36666666666 3 334311
Q ss_pred -----CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEE
Q 040297 477 -----IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQ 551 (773)
Q Consensus 477 -----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (773)
++..+..+++|+.|++++ .+++..+..+..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-------------------------------------------- 453 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-------------------------------------------- 453 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--------------------------------------------
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--------------------------------------------
Confidence 112244556666666655 444332222221
Q ss_pred EEecCccccccccccccccEEecccCcCcccCChhh-hccCCCCeEeCCCCcCCCCCcc-ccccCccCCeeeCccccCcc
Q 040297 552 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHG 629 (773)
Q Consensus 552 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~ 629 (773)
.+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++.
T Consensus 454 -------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 454 -------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 12356666666666655444444 4566666666666666443332 23346666666666666643
Q ss_pred cCCccc-ccCCCCCEEEccCC
Q 040297 630 KIPSQL-TVLNTLAVFKVAYN 649 (773)
Q Consensus 630 ~~p~~l-~~l~~L~~L~ls~N 649 (773)
.....+ ..++.|+...+..+
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHHhCCCCEEEEecCC
Confidence 333333 34455554444443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.4e-26 Score=251.00 Aligned_cols=247 Identities=19% Similarity=0.204 Sum_probs=164.3
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
....++.++..++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|.++++|+.|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4578889888888 5676654 789999999999998888999999999999999999998888899999999999999
Q ss_pred CCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCC-ccccccchhhhcCCCCcEEEccCcccccc
Q 040297 399 NNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN-RFHGSIPNWINILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 476 (773)
+|.+++..+..+. +++|+.|++++|.+....+..|.++++|++|++++| .+....+..+..+++|+.|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9988866655443 556666666666665555555555555555555553 22222222344444444444444444421
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
| .+..++
T Consensus 212 -~-~~~~l~----------------------------------------------------------------------- 218 (452)
T 3zyi_A 212 -P-NLTPLV----------------------------------------------------------------------- 218 (452)
T ss_dssp -C-CCTTCT-----------------------------------------------------------------------
T ss_pred -c-cccccc-----------------------------------------------------------------------
Confidence 1 233333
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+|+.|+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|+.|||++|++++..+..+.
T Consensus 219 -----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 219 -----------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp -----------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred -----------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 555566666666555555666666666666666666655566666666666666666666655555566
Q ss_pred cCCCCCEEEccCCccc
Q 040297 637 VLNTLAVFKVAYNNLS 652 (773)
Q Consensus 637 ~l~~L~~L~ls~N~l~ 652 (773)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 6666666666666543
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.2e-28 Score=254.67 Aligned_cols=263 Identities=20% Similarity=0.180 Sum_probs=161.0
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 333333332223333344455555555555555444555555555555555555543332 455555555555555544
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCccccc-
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC- 482 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 482 (773)
+..+ .++|+.|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus 94 ~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 94 ELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp EEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred cccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 3221 245555555555555544332 45677777777777766566666677777777777777765555553
Q ss_pred CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccc
Q 040297 483 ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQ 562 (773)
Q Consensus 483 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (773)
.+++|++|++++|.+++. +..
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~~---------------------------------------------------------- 187 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KGQ---------------------------------------------------------- 187 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-ECC----------------------------------------------------------
T ss_pred ccCcCCEEECCCCcCccc-ccc----------------------------------------------------------
Confidence 567777777777777533 110
Q ss_pred ccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc-ccCCcccccCCCC
Q 040297 563 GRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPSQLTVLNTL 641 (773)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L 641 (773)
..+++|+.|++++|++++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++. +.+|..+..++.|
T Consensus 188 -~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 188 -VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp -CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred -cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 013477778888888874 4555777888888888888888 46777788888888888888887 6777777777777
Q ss_pred CEEEccCC-cccccCCC
Q 040297 642 AVFKVAYN-NLSGKIPD 657 (773)
Q Consensus 642 ~~L~ls~N-~l~~~~p~ 657 (773)
+.+++++| .+.|..|.
T Consensus 265 ~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 265 QTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHHSSSSC
T ss_pred eEEECCCchhccCCchh
Confidence 77777744 46655443
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=243.36 Aligned_cols=222 Identities=20% Similarity=0.261 Sum_probs=130.9
Q ss_pred CCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCC-CCCceeEEECCCccccccchhhhcCCCCeeEEe
Q 040297 365 LSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLD 443 (773)
Q Consensus 365 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 443 (773)
.++++.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+ .+++|+.|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888887 66777778888888888888887 444433 3566666666666666 3455566666666666
Q ss_pred CCCCccccccchhhhc---------CCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccc
Q 040297 444 LSYNRFHGSIPNWINI---------LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDY 514 (773)
Q Consensus 444 Ls~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~ 514 (773)
+++|++.+.+|..+.. +++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------- 227 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH------- 227 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG-------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc-------
Confidence 6666555555554432 555555555555555 445555555555555555555543 2222221
Q ss_pred cCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCC
Q 040297 515 HEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIH 594 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 594 (773)
+++|+.|++++|.+.+.+|..++.+++|+
T Consensus 228 ---------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 228 ---------------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp ---------------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred ---------------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 23455555555555555555555555555
Q ss_pred eEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCC
Q 040297 595 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649 (773)
Q Consensus 595 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 649 (773)
+|+|++|.+.+.+|..++++++|+.|||++|++.+.+|+.+..+++|+.+++..|
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5555555555555555555555555555555555555555555555555555544
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=249.81 Aligned_cols=268 Identities=20% Similarity=0.183 Sum_probs=188.1
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (773)
++..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444556666655 4555555555566666666666666665666666666666666666654332 5555666666666
Q ss_pred CCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccch
Q 040297 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 351 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 430 (773)
+|.+++.. ..++|++ |++++|.+++..+.. +++|+.|++++|.+++..+
T Consensus 89 ~n~l~~l~-----~~~~L~~------------------------L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 89 NNYVQELL-----VGPSIET------------------------LHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SSEEEEEE-----ECTTCCE------------------------EECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGG
T ss_pred CCcccccc-----CCCCcCE------------------------EECCCCccCCcCccc--cCCCCEEECCCCCCCCccc
Confidence 66554221 1244444 445444444333322 3456677777777777667
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhh-hcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccC
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS 509 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 509 (773)
..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|++++. |..+..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~-- 212 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQS-- 212 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGG--
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcc--
Confidence 677778889999999999887766666 4689999999999999865 3 344589999999999999854 333332
Q ss_pred cCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhc
Q 040297 510 LGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 589 (773)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 589 (773)
+++|+.|++++|+++ .+|..+..
T Consensus 213 --------------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 213 --------------------------------------------------------AAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp --------------------------------------------------------GTTCSEEECTTSCCC-EECTTCCC
T ss_pred --------------------------------------------------------cCcccEEECcCCccc-chhhHhhc
Confidence 458999999999999 57888999
Q ss_pred cCCCCeEeCCCCcCC-CCCccccccCccCCeeeCc-cccCcccCCcc
Q 040297 590 LTRIHALNLSHNNLT-GTIPTTFSNLKQIESLDLS-YNLLHGKIPSQ 634 (773)
Q Consensus 590 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs-~N~l~~~~p~~ 634 (773)
+++|+.|+|++|.++ +.+|..++.+++|+.|+++ .+.+.|..|..
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999999999999999 8888999999999999999 44566666644
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.4e-26 Score=238.41 Aligned_cols=235 Identities=20% Similarity=0.227 Sum_probs=163.9
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 323 (773)
.+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 468999999999998 67778888999999999999998 8887664 4888999999988888 557778888888888
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 888888877777665430 00112333445555555555554 34444555555555555555554
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccC
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 483 (773)
+..+....+++|+.|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.+
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 43333233455555555555555555666667777888888887777777777778888888888888888788888888
Q ss_pred CCCCCEEEccCCcCC
Q 040297 484 LKEVRLIDLSHNNLS 498 (773)
Q Consensus 484 l~~L~~L~L~~N~l~ 498 (773)
+++|+.+++..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 888888888766554
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.3e-27 Score=259.03 Aligned_cols=246 Identities=23% Similarity=0.193 Sum_probs=142.6
Q ss_pred CCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECC
Q 040297 342 RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLS 421 (773)
Q Consensus 342 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 421 (773)
++|+.|++++|.+++..|..|..+++|++|++++|.+.+..| +..+++|+.|++++|.+++..+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~------------- 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG------------- 98 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-------------
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-------------
Confidence 367777777777776666677777777777777777765444 66667777777776665533221
Q ss_pred CccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcC
Q 040297 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYI 501 (773)
Q Consensus 422 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 501 (773)
++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 99 ---------------~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 99 ---------------PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp ---------------TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred ---------------CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 3445555555554433322 2345555555555555544555555555555555555555544
Q ss_pred cchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc
Q 040297 502 PACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 581 (773)
Q Consensus 502 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 581 (773)
|..+.. .+++|+.|+|++|.+++
T Consensus 161 ~~~l~~---------------------------------------------------------~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 161 FAELAA---------------------------------------------------------SSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp GGGGGG---------------------------------------------------------GTTTCCEEECTTSCCCE
T ss_pred hHHHhh---------------------------------------------------------hCCcccEEecCCCcccc
Confidence 443321 12355556666666554
Q ss_pred cCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccc-ccCCCCCc
Q 040297 582 EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS-GKIPDRVA 660 (773)
Q Consensus 582 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~~~ 660 (773)
..+ ...+++|+.|+|++|.+++..| .|..+++|+.|||++|.+++ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 321 2245666666666666664333 36666666666666666664 4555666666666666666665 45554444
Q ss_pred ccccCCcCccc-------CCCCCCCCCC
Q 040297 661 QFSTFEEDSYE-------GNPFLCGWPL 681 (773)
Q Consensus 661 ~~~~l~~~~l~-------~Np~lC~~~l 681 (773)
.++.+..+++. +||+.|.|+.
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred hCCCCcEEeccccccccCCCcccccCCc
Confidence 55555555554 7888888753
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=245.31 Aligned_cols=250 Identities=21% Similarity=0.164 Sum_probs=175.6
Q ss_pred CcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEE
Q 040297 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILA 300 (773)
Q Consensus 221 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 300 (773)
..+.++.++..++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3567888888887 7787654 57888888888888877788888888888888888887 56655556677777777
Q ss_pred cccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc-CCCCcchhhcCCCCCcEEEcccCcCC
Q 040297 301 LSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSGRIPRWLGNLSALEDIRMSNNNLE 379 (773)
Q Consensus 301 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 379 (773)
+++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..|.++++|++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 77777776666666677777777777777765555566666666666666633 33222234555555555555555554
Q ss_pred CCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhc
Q 040297 380 GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINI 459 (773)
Q Consensus 380 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 459 (773)
. +|....+++|+.|++++|.+++..+..|.++++|+.|++++|++++..+..|..
T Consensus 199 ~-------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 199 E-------------------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp S-------------------------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred c-------------------------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 2 223333455666666666666666667777778888888888887777777778
Q ss_pred CCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCc
Q 040297 460 LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500 (773)
Q Consensus 460 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 500 (773)
+++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 88888888888888876667777888888888888887643
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.1e-25 Score=250.18 Aligned_cols=267 Identities=22% Similarity=0.314 Sum_probs=139.7
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++++.. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5777777777776 4555443 67777777777776 5654 25666666666666664332 4566666666
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 405 (773)
++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+.+. |. .+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~-------------- 162 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSE-------------- 162 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTT--------------
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCC--------------
Confidence 6666653 232 33555555555555553 2221 24444444444444421 11 1233
Q ss_pred CCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC
Q 040297 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK 485 (773)
Q Consensus 406 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 485 (773)
|+.|++++|.+++.. ..+++|+.|++++|++++ +|. ..++|+.|++++|.++. +|. .++
T Consensus 163 ---------L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~ 221 (622)
T 3g06_A 163 ---------LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS 221 (622)
T ss_dssp ---------CCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT
T ss_pred ---------CCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC
Confidence 334444444443322 223455555555555553 222 13455666666665552 232 234
Q ss_pred CCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccc
Q 040297 486 EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI 565 (773)
Q Consensus 486 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (773)
+|+.|++++|++++ +|. .
T Consensus 222 ~L~~L~Ls~N~L~~-lp~-------------------------------------------------------------~ 239 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LPV-------------------------------------------------------------L 239 (622)
T ss_dssp TCCEEECCSSCCSC-CCC-------------------------------------------------------------C
T ss_pred CCCEEEccCCccCc-CCC-------------------------------------------------------------C
Confidence 55566666665543 220 0
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
+++|+.|++++|+|+ .+|. .+++|+.|+|++|.|+ .+|..|.++++|+.|+|++|++++.+|..+..+
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 235555666666555 3443 3455666666666665 455556666666666666666665555555443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.1e-25 Score=248.33 Aligned_cols=248 Identities=22% Similarity=0.271 Sum_probs=175.5
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|++++|.+++. |. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence 44555555555544 2232 23455555555555542 232 345555555555555532 22 3455666666
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 477 (773)
++|.+++..+ . +++|+.|++++|.+++... ..++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +
T Consensus 129 ~~N~l~~lp~-~--l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 129 FGNQLTSLPV-L--PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp CSSCCSCCCC-C--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCCcCCC-C--CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence 6666554322 1 3567777777777665432 34789999999999995 55 457899999999999985 4
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
|. .+++|+.|++++|.++. +|..
T Consensus 197 ~~---~~~~L~~L~L~~N~l~~-l~~~----------------------------------------------------- 219 (622)
T 3g06_A 197 PT---LPSELYKLWAYNNRLTS-LPAL----------------------------------------------------- 219 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSS-CCCC-----------------------------------------------------
T ss_pred CC---ccchhhEEECcCCcccc-cCCC-----------------------------------------------------
Confidence 43 35789999999999873 3311
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
+++|+.|++++|++++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++|+++ .+|..+..
T Consensus 220 --------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~ 282 (622)
T 3g06_A 220 --------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH 282 (622)
T ss_dssp --------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG
T ss_pred --------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh
Confidence 2489999999999995 66 45689999999999999 5665 6789999999999999 77999999
Q ss_pred CCCCCEEEccCCcccccCCCCCcccc
Q 040297 638 LNTLAVFKVAYNNLSGKIPDRVAQFS 663 (773)
Q Consensus 638 l~~L~~L~ls~N~l~~~~p~~~~~~~ 663 (773)
+++|+.|++++|++++.+|..+..+.
T Consensus 283 l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999999999999999887655444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=9.4e-27 Score=242.89 Aligned_cols=248 Identities=20% Similarity=0.201 Sum_probs=163.8
Q ss_pred hcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcC-ccCCchhHh------hCCCCCcEEEccCCccCccCchhh
Q 040297 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF-QGHIPVEIG------TYLPGLMDLNLSRNAFNGSIPSSF 265 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~------~~l~~L~~L~L~~n~l~~~~p~~~ 265 (773)
...++|++|++++|.+ .+|..+... |++|++++|.+ .+.+|...+ ..+++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4556778888888877 455544433 77788888877 345565543 126788888888888887777765
Q ss_pred --hCCCCCcEEEeecccCCCccchhHhhcC-----CCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCcc--ccc
Q 040297 266 --ADMKMLERLDISYNQLTGEIPERMATGC-----FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE--ISD 336 (773)
Q Consensus 266 --~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 336 (773)
..+++|++|++++|.+++. |..+.. + ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 7888888888888888844 654433 4 7788888888888877777777888888888888877654 233
Q ss_pred cc--cCCCCCCeeeCcCCcCCCC---cchhhcCCCCCcEEEcccCcCCCCcc-ccccCCCCCcEEEccCCCCCCCCCCCC
Q 040297 337 SL--SNCRLLAGLYLSDNHLSGR---IPRWLGNLSALEDIRMSNNNLEGPIP-IEFCQLDYLTILDLSNNAIFGTLPSCF 410 (773)
Q Consensus 337 ~l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 410 (773)
.+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..| ..+..+++|+.|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 6777788888888777731 12334566777777777777776554 33455677777777777776 334333
Q ss_pred CCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc
Q 040297 411 SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450 (773)
Q Consensus 411 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 450 (773)
. ++|+.|++++|++++. |. +..+++|++|++++|+++
T Consensus 273 ~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred c-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 2 5555555555555554 22 445555555555555554
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.1e-27 Score=274.37 Aligned_cols=409 Identities=14% Similarity=0.084 Sum_probs=259.0
Q ss_pred cchhHhhcCCCCCEEEccCCcCccC---Cc------------cCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEE
Q 040297 187 FPNWLVENNTNLETLLLANNSLFGS---FR------------MPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251 (773)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~---~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 251 (773)
.|..++..+++|++|+++++..... .| .....+++|++|++++|.+++..+..+...+++|++|+
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 3444556677777777777642211 11 11235678888888888887666666654578888888
Q ss_pred ccCC-ccCcc-CchhhhCCCCCcEEEeecccCCCccchhH---hhcCCCccEEEcccCc--CCCc-CcccccCCCCCcEE
Q 040297 252 LSRN-AFNGS-IPSSFADMKMLERLDISYNQLTGEIPERM---ATGCFLLEILALSNNN--LQGH-IFSKKFNLTNLMRL 323 (773)
Q Consensus 252 L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L 323 (773)
+++| .++.. ++..+.++++|++|++++|.+++..+..+ ...+++|+.|++++|. +... .......+++|++|
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 8888 44432 34445578888888888888765443322 2246688888888886 2211 11112346888888
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCc-------CCCCcchhhcCCCCCcEE-EcccCcCCCCccccccCCCCCcEE
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNH-------LSGRIPRWLGNLSALEDI-RMSNNNLEGPIPIEFCQLDYLTIL 395 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L 395 (773)
++++|...+.++..+..+++|+.|+++.+. +. .++..+.++++|+.+ .+.+... +.++..+..+++|+.|
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTL 294 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEE
T ss_pred ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEE
Confidence 888873322366677778888888865543 22 234467778888887 3433222 2344444567888888
Q ss_pred EccCCCCCCCCCC--CCCCCceeEEECCCccccc-cchhhhcCCCCeeEEeCC---------CCccccccchhhh-cCCC
Q 040297 396 DLSNNAIFGTLPS--CFSPAFIEQVHLSKNKIEG-QLESIIHDSPYLVTLDLS---------YNRFHGSIPNWIN-ILPQ 462 (773)
Q Consensus 396 ~L~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~Ls---------~n~l~~~~~~~~~-~l~~ 462 (773)
++++|.+++.... ...+++|+.|++++| +.. ..+.....+++|++|+++ .+.+++.....+. .+++
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 8888876532211 123678888888877 332 233334457888888773 3455543333333 4788
Q ss_pred CcEEEccCccccccCccccc-CCCCCCEEEcc--C----CcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCC
Q 040297 463 LSSLLLGNNYIEGEIPVQLC-ELKEVRLIDLS--H----NNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSP 534 (773)
Q Consensus 463 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (773)
|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++.... .+..
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~--------------------------- 426 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--------------------------- 426 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH---------------------------
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH---------------------------
Confidence 88888877877765555554 47788888887 3 333311000 0000
Q ss_pred CCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhc-cCCCCeEeCCCCcCCCCCcccc-c
Q 040297 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY-LTRIHALNLSHNNLTGTIPTTF-S 612 (773)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~ 612 (773)
. ...+++|+.|++++ .+++..+..++. +++|++|+|++|.+++..+..+ .
T Consensus 427 -------------------------l--~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 478 (594)
T 2p1m_B 427 -------------------------I--VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478 (594)
T ss_dssp -------------------------H--HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred -------------------------H--HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence 0 01245888999977 777666666665 8889999999999876655555 6
Q ss_pred cCccCCeeeCccccCcccCCc-ccccCCCCCEEEccCCcccc
Q 040297 613 NLKQIESLDLSYNLLHGKIPS-QLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 613 ~l~~L~~LdLs~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~ 653 (773)
.+++|+.|+|++|++++..+. ....+++|+.|++++|+++.
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 789999999999998655443 34557889999999998843
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=9.5e-27 Score=242.85 Aligned_cols=248 Identities=23% Similarity=0.209 Sum_probs=172.5
Q ss_pred ccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccC-ccCchhhh-------CCCCCcEEEeecccCCCccch
Q 040297 216 IHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFN-GSIPSSFA-------DMKMLERLDISYNQLTGEIPE 287 (773)
Q Consensus 216 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~~~ 287 (773)
+...++|++|++++|.+ .+|..+.. .|++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34567889999999998 78887776 3888899999884 45666665 789999999999999888887
Q ss_pred hHh-hcCCCccEEEcccCcCCCcCcccccCC-----CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC--cc
Q 040297 288 RMA-TGCFLLEILALSNNNLQGHIFSKKFNL-----TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR--IP 359 (773)
Q Consensus 288 ~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~ 359 (773)
.++ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 653 5688999999999999887 6666665 8899999999999887778888999999999999987754 23
Q ss_pred hhh--cCCCCCcEEEcccCcCCCC--cc-ccccCCCCCcEEEccCCCCCCCCCC-C-CCCCceeEEECCCccccccchhh
Q 040297 360 RWL--GNLSALEDIRMSNNNLEGP--IP-IEFCQLDYLTILDLSNNAIFGTLPS-C-FSPAFIEQVHLSKNKIEGQLESI 432 (773)
Q Consensus 360 ~~~--~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~-~~~~~L~~L~l~~n~l~~~~~~~ 432 (773)
..+ ..+++|++|++++|.+.+. .+ ..+..+++|+.|++++|.+.+..|. . ..+++|+.|++++|.++. +|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhh
Confidence 344 7888999999999988732 12 3345778888888888888776532 1 224455555555555542 2222
Q ss_pred hcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCcccc
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIE 474 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 474 (773)
+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 22 3444444444444432 22 334444444444444443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.2e-25 Score=226.29 Aligned_cols=209 Identities=22% Similarity=0.233 Sum_probs=175.6
Q ss_pred CceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEc
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDL 492 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 492 (773)
++++.|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46778888888887777777888888999999999888776777888899999999999998877788889999999999
Q ss_pred cCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEE
Q 040297 493 SHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 572 (773)
Q Consensus 493 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 572 (773)
++|++.+..+..+.. +++|++|
T Consensus 108 ~~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L 129 (276)
T 2z62_A 108 VETNLASLENFPIGH----------------------------------------------------------LKTLKEL 129 (276)
T ss_dssp TTSCCCCSTTCCCTT----------------------------------------------------------CTTCCEE
T ss_pred CCCCccccCchhccc----------------------------------------------------------CCCCCEE
Confidence 999887544433221 4588999
Q ss_pred ecccCcCccc-CChhhhccCCCCeEeCCCCcCCCCCccccccCccCC----eeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 573 DLSCNKLTGE-IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE----SLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 573 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
++++|++++. +|..++.+++|++|+|++|++++..+..|..+++|+ .|++++|++++..+..+.. .+|+.|+++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~ 208 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALD 208 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECC
Confidence 9999999863 688999999999999999999988888888888887 8999999999777766554 489999999
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+|++++..+..+..+++++.+++++||+.|+|+
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999998888777889999999999999999996
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.4e-24 Score=219.70 Aligned_cols=185 Identities=21% Similarity=0.245 Sum_probs=129.9
Q ss_pred CeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 438 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
++++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------- 107 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ---------- 107 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc----------
Confidence 4555555555555444445555666666666666665444444566666666666666665433322221
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEe
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (773)
+++|++|++++|++++..+..|+.+++|++|+
T Consensus 108 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 108 ------------------------------------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp ------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 34677777777777766666777888888888
Q ss_pred CCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 598 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
|++|.+++..+..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+|||.|
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 88888886666667888888888888888887777778888888888888888887777667778888888888889888
Q ss_pred CCC
Q 040297 678 GWP 680 (773)
Q Consensus 678 ~~~ 680 (773)
+|.
T Consensus 220 ~c~ 222 (270)
T 2o6q_A 220 TCN 222 (270)
T ss_dssp SSS
T ss_pred CCc
Confidence 885
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-25 Score=246.57 Aligned_cols=235 Identities=22% Similarity=0.186 Sum_probs=132.0
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 355555555555555555555556666666666666554433 556666666666666665322 2267777777
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh-cCCCCcEEEccCcccccc
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN-ILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 476 (773)
++|.+.+..+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 107 ~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 777766544322 23455555555555555554555555555555555555554444443 345555555555555433
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
. ....++
T Consensus 185 ~--~~~~l~----------------------------------------------------------------------- 191 (487)
T 3oja_A 185 K--GQVVFA----------------------------------------------------------------------- 191 (487)
T ss_dssp E--CCCCCT-----------------------------------------------------------------------
T ss_pred c--ccccCC-----------------------------------------------------------------------
Confidence 1 112233
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc-ccCCccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPSQL 635 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l 635 (773)
+|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+
T Consensus 192 -----------~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 192 -----------KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp -----------TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred -----------CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 55556666666654 33336666666666666666663 5555666666666677666666 5556666
Q ss_pred ccCCCCCEEEcc
Q 040297 636 TVLNTLAVFKVA 647 (773)
Q Consensus 636 ~~l~~L~~L~ls 647 (773)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 666666666664
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.1e-24 Score=219.05 Aligned_cols=208 Identities=22% Similarity=0.218 Sum_probs=142.2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcE
Q 040297 386 FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSS 465 (773)
Q Consensus 386 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 465 (773)
+..+++++.++++++.++...+.. .+. ++.|++++|.+++..+..+..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~------------------------l~~L~L~~N~l~~~~~~~~~~l~~L~~ 59 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKD------------------------TTILHLSENLLYTFSLATLMPYTRLTQ 59 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTT------------------------CCEEECTTSCCSEEEGGGGTTCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCC------------------------CCEEEcCCCcCCccCHHHhhcCCCCCE
Confidence 455667777777777665433222 134 445555555554444445555555555
Q ss_pred EEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCC
Q 040297 466 LLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMG 545 (773)
Q Consensus 466 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (773)
|++++|.+++..+ ...+++|+.|++++|+++ .+|..+..
T Consensus 60 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~-------------------------------------- 98 (290)
T 1p9a_G 60 LNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQT-------------------------------------- 98 (290)
T ss_dssp EECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTT--------------------------------------
T ss_pred EECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhcc--------------------------------------
Confidence 5555555553322 145666666666666665 33332211
Q ss_pred CcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccc
Q 040297 546 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625 (773)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 625 (773)
+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 99 --------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 99 --------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred --------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 346777788888887666677888888888888888888777777888888888899888
Q ss_pred cCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 626 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++++..+..|..+++|+.|++++|+++ .+|..+....+++.+++.+|||.|+|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 888777777788888999999999888 4555566777888899999999998854
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.5e-23 Score=214.72 Aligned_cols=222 Identities=21% Similarity=0.260 Sum_probs=156.4
Q ss_pred EEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc
Q 040297 224 ILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303 (773)
Q Consensus 224 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 303 (773)
..+..+..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3444555555 5565432 46788888888887766667778888888888888777 55555555677888888888
Q ss_pred CcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC-cchhhcCCCCCcEEEcccCcCCCCc
Q 040297 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR-IPRWLGNLSALEDIRMSNNNLEGPI 382 (773)
Q Consensus 304 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~ 382 (773)
|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 888777777777888888888888888766666677888888888888888763 4777888888888888888887766
Q ss_pred cccccCCCCCc----EEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc
Q 040297 383 PIEFCQLDYLT----ILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450 (773)
Q Consensus 383 ~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 450 (773)
+..+..+++|+ .|++++|.+.+..+..+...+|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66666655555 777777777766665555556666666666666555555555555666666655555
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.4e-22 Score=206.53 Aligned_cols=206 Identities=21% Similarity=0.241 Sum_probs=162.9
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccC
Q 040297 391 YLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGN 470 (773)
Q Consensus 391 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 470 (773)
..+.++++++.++.. |..+ ++.++.|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCcc-CCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 456677777766643 3222 25677777777777777777788888888888888888866566677888888888888
Q ss_pred ccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceE
Q 040297 471 NYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETV 550 (773)
Q Consensus 471 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (773)
|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 8888766677788888999999988887655544332
Q ss_pred EEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 551 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 551 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
+++|++|+|++|++++..+..|+.+++|++|+|++|.+++..+..|.++++|+.|+|++|++++.
T Consensus 132 ---------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 132 ---------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 35888999999999876666788999999999999999987777899999999999999999987
Q ss_pred CCcccccCCCCCEEEccCCcccccCC
Q 040297 631 IPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 631 ~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
.+..+..+++|+.|++++|++....+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCCc
Confidence 77788999999999999999875443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.3e-23 Score=210.52 Aligned_cols=224 Identities=19% Similarity=0.229 Sum_probs=161.4
Q ss_pred CCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCc
Q 040297 344 LAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423 (773)
Q Consensus 344 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 423 (773)
+..+++..+.+.... ....+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-------------------- 76 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-------------------- 76 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC--------------------
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC--------------------
Confidence 334445555444332 234456666666666665521 23555666666666665544
Q ss_pred cccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcc
Q 040297 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA 503 (773)
Q Consensus 424 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 503 (773)
+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 77 ---~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 77 ---DI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp ---CC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ---Cc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 32 2456677778888888877766666677788888888888888876666678888888888888888755443
Q ss_pred hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccC
Q 040297 504 CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI 583 (773)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 583 (773)
.+.. +++|+.|++++|++++..
T Consensus 152 ~~~~----------------------------------------------------------l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 152 VFDK----------------------------------------------------------LTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TTTT----------------------------------------------------------CTTCCEEECCSSCCCCCC
T ss_pred Hhcc----------------------------------------------------------CccCCEEECCCCCcCccC
Confidence 3322 347888888888888777
Q ss_pred ChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcc
Q 040297 584 PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQ 661 (773)
Q Consensus 584 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 661 (773)
+..++.+++|++|+|++|.+++..|..|+.+++|+.|++++|++.+.. ++|+.++++.|.++|.+|..++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccc
Confidence 777889999999999999999888888899999999999999988654 46888899999999999986543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.3e-22 Score=204.68 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=127.4
Q ss_pred hhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCee
Q 040297 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLV 440 (773)
Q Consensus 361 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 440 (773)
.+..+++++.++++++.++ .+|..+. ++++.|++++|.+.+..+. .+.++++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~-----------------------~~~~l~~L~ 58 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLA-----------------------TLMPYTRLT 58 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGG-----------------------GGTTCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHH-----------------------HhhcCCCCC
Confidence 3677899999999999998 4555553 6899999999988754443 344445555
Q ss_pred EEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCC
Q 040297 441 TLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPP 520 (773)
Q Consensus 441 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~ 520 (773)
+|++++|.+++..+. +.+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..
T Consensus 59 ~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------- 122 (290)
T 1p9a_G 59 QLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------- 122 (290)
T ss_dssp EEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------
T ss_pred EEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-------------
Confidence 555555555432221 34555555555555555 44555555666666666666665433333322
Q ss_pred CccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCC
Q 040297 521 TSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSH 600 (773)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 600 (773)
+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 123 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 123 ---------------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp ---------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ---------------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 23566666666666655555566666777777777
Q ss_pred CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccc
Q 040297 601 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 601 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
|+|++..+..|..+++|+.|+|++|+++ .+|..+....+|+.+++++|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7776555555666777777777777766 55556666666777777777664
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.2e-22 Score=207.14 Aligned_cols=228 Identities=18% Similarity=0.174 Sum_probs=168.2
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
.++..+++..+.+.+.. ....+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34555667777666443 356789999999999998843 3588899999999999999863 36788888888888
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 477 (773)
++|.+++..+. .+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 93 ~~n~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 93 TGNQLQSLPNG-----------------------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp TTSCCCCCCTT-----------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccCccChh-----------------------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC
Confidence 88877654443 3445566666666666666555555666677777777777776655
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
+..+..+++|+.|++++|++++..+..+..
T Consensus 150 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------------- 179 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------------------------------------------------- 179 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------------------
T ss_pred HHHhccCccCCEEECCCCCcCccCHHHhcC--------------------------------------------------
Confidence 556677777777777777776544433322
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
+++|+.|++++|++++..|..++.+++|++|+|++|.+.+. +++|+.|+++.|.++|.+|..++.
T Consensus 180 --------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 180 --------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp --------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred --------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 34778888888888877777788999999999999988854 457889999999999999988776
Q ss_pred CC
Q 040297 638 LN 639 (773)
Q Consensus 638 l~ 639 (773)
+.
T Consensus 245 ~~ 246 (272)
T 3rfs_A 245 VA 246 (272)
T ss_dssp BC
T ss_pred cC
Confidence 54
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.9e-23 Score=222.71 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=75.7
Q ss_pred EEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcc----hhhcCCC-CCcEEEcccCcCCCCccccccCC-----CC
Q 040297 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP----RWLGNLS-ALEDIRMSNNNLEGPIPIEFCQL-----DY 391 (773)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 391 (773)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777666666667777777777776555 5666676 77777777777776666555543 66
Q ss_pred CcEEEccCCCCCCCCCCCCC-----C-CceeEEECCCccccccchhhhc----C-CCCeeEEeCCCCccc
Q 040297 392 LTILDLSNNAIFGTLPSCFS-----P-AFIEQVHLSKNKIEGQLESIIH----D-SPYLVTLDLSYNRFH 450 (773)
Q Consensus 392 L~~L~L~~n~l~~~~~~~~~-----~-~~L~~L~l~~n~l~~~~~~~~~----~-~~~L~~L~Ls~n~l~ 450 (773)
|+.|++++|.+++..+..+. . ++|+.|++++|.+++..+..+. . .++|++|++++|.++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 77777777766544333111 1 3455555555554444332221 1 234444444444444
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2e-23 Score=222.49 Aligned_cols=201 Identities=21% Similarity=0.197 Sum_probs=116.4
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCcccc----ccccCCC-CCCeeeCcCCcCCCCcchhhcCC-----CCC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEIS----DSLSNCR-LLAGLYLSDNHLSGRIPRWLGNL-----SAL 368 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 368 (773)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566777776666655555567777777777765554 5566666 67777777777766555555553 677
Q ss_pred cEEEcccCcCCCCcccccc----CC-CCCcEEEccCCCCCCCCCCCCC------CCceeEEECCCccccccch----hhh
Q 040297 369 EDIRMSNNNLEGPIPIEFC----QL-DYLTILDLSNNAIFGTLPSCFS------PAFIEQVHLSKNKIEGQLE----SII 433 (773)
Q Consensus 369 ~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~~~----~~~ 433 (773)
++|++++|.+.+..+..+. .+ ++|+.|++++|.+++..+..+. +++|++|++++|.+++... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777777655554333 33 6777777777776654443221 2467777777777764332 333
Q ss_pred cCCC-CeeEEeCCCCccccccchhhh----cC-CCCcEEEccCcccccc----CcccccC-CCCCCEEEccCCcCCC
Q 040297 434 HDSP-YLVTLDLSYNRFHGSIPNWIN----IL-PQLSSLLLGNNYIEGE----IPVQLCE-LKEVRLIDLSHNNLSG 499 (773)
Q Consensus 434 ~~~~-~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~ 499 (773)
...+ +|++|++++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|+.|++++|.+++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 4443 666666666666654443332 23 3566666666655532 2222322 2345555555555543
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.8e-22 Score=200.24 Aligned_cols=180 Identities=20% Similarity=0.197 Sum_probs=115.2
Q ss_pred ceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEcc
Q 040297 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493 (773)
Q Consensus 414 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 493 (773)
..+.++++++.++..+.. +. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 455667777766644332 21 456777777777776666666667777777777777766666666667777777777
Q ss_pred CCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEe
Q 040297 494 HNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGID 573 (773)
Q Consensus 494 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 573 (773)
+|++++..+..+.. +++|++|+
T Consensus 92 ~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L~ 113 (251)
T 3m19_A 92 NNQLASLPLGVFDH----------------------------------------------------------LTQLDKLY 113 (251)
T ss_dssp TSCCCCCCTTTTTT----------------------------------------------------------CTTCCEEE
T ss_pred CCcccccChhHhcc----------------------------------------------------------cCCCCEEE
Confidence 77666443333221 23666677
Q ss_pred cccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 574 LSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 574 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|+.|||++|++++..|..+..+++|+.|++++|++.+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 77777665555556666677777777777765555566666777777777777766666666666667777777766665
Q ss_pred c
Q 040297 654 K 654 (773)
Q Consensus 654 ~ 654 (773)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.8e-23 Score=225.32 Aligned_cols=247 Identities=19% Similarity=0.227 Sum_probs=165.5
Q ss_pred cccccccCCCCCCeeeCcCCcCCCCcch----hhcCCCCCcEEEcccCcC---CCCccccc-------cCCCCCcEEEcc
Q 040297 333 EISDSLSNCRLLAGLYLSDNHLSGRIPR----WLGNLSALEDIRMSNNNL---EGPIPIEF-------CQLDYLTILDLS 398 (773)
Q Consensus 333 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~ 398 (773)
.++..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+ .+.+|..+ ..+++|+.|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3455666777788888888777755333 355677777777777533 33344333 455566666666
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh----cC---------CCCcE
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN----IL---------PQLSS 465 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~ 465 (773)
+|.+.+... ..++..+..+++|++|++++|.+++..+..+. .+ ++|++
T Consensus 103 ~n~l~~~~~-------------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 103 DNAFGPTAQ-------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp SCCCCTTTH-------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred CCcCCHHHH-------------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 555442100 03455666777777777777777644333333 33 78888
Q ss_pred EEccCcccc-ccCc---ccccCCCCCCEEEccCCcCCCc-----CcchhhccCcCccccCCCCCCccccccccccCCCCC
Q 040297 466 LLLGNNYIE-GEIP---VQLCELKEVRLIDLSHNNLSGY-----IPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCL 536 (773)
Q Consensus 466 L~L~~n~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (773)
|++++|+++ +.++ ..+..+++|+.|++++|+++.. .|..+.
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~------------------------------ 213 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA------------------------------ 213 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG------------------------------
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh------------------------------
Confidence 888888876 3333 3566777888888888877621 111111
Q ss_pred CCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCc----ccCChhhhccCCCCeEeCCCCcCCCC----Cc
Q 040297 537 PTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT----GEIPTQIGYLTRIHALNLSHNNLTGT----IP 608 (773)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p 608 (773)
.+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|
T Consensus 214 ----------------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 214 ----------------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp ----------------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred ----------------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 1357888888888885 56777888888899999999988865 56
Q ss_pred cccc--cCccCCeeeCccccCcc----cCCccc-ccCCCCCEEEccCCcccccCC
Q 040297 609 TTFS--NLKQIESLDLSYNLLHG----KIPSQL-TVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 609 ~~~~--~l~~L~~LdLs~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~~p 656 (773)
..+. .+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6663 38889999999999987 477777 668899999999999887664
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.3e-22 Score=214.42 Aligned_cols=251 Identities=15% Similarity=0.192 Sum_probs=144.0
Q ss_pred CcEEEcccccCCccccccccCC--CCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCC-ccccccCCCCCcEEE
Q 040297 320 LMRLQLDGNNFTGEISDSLSNC--RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP-IPIEFCQLDYLTILD 396 (773)
Q Consensus 320 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 396 (773)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666555544 2333333 4555555555555544333 33455555555555554433 333444444444444
Q ss_pred ccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCC-ccccc-cchhhhcCCCCcEEEccCc-cc
Q 040297 397 LSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN-RFHGS-IPNWINILPQLSSLLLGNN-YI 473 (773)
Q Consensus 397 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l 473 (773)
+++| .+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+
T Consensus 125 L~~~-----------------------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGL-----------------------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTC-----------------------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCc-----------------------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 4444 444445555666677777777776 45542 4555666777777777777 66
Q ss_pred ccc-CcccccCCC-CCCEEEccCC--cCC-CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 474 EGE-IPVQLCELK-EVRLIDLSHN--NLS-GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 474 ~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
++. ++..+..++ +|++|++++| .++ +.+|..+..
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~----------------------------------------- 220 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----------------------------------------- 220 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-----------------------------------------
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-----------------------------------------
Confidence 643 455566667 7777777777 343 222332221
Q ss_pred eEEEEecCccccccccccccccEEecccCc-CcccCChhhhccCCCCeEeCCCCc-CCCCCccccccCccCCeeeCcccc
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNK-LTGEIPTQIGYLTRIHALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+++|+.|++++|. +++..+..++.+++|++|++++|. ++......++++++|+.|++++|
T Consensus 221 -----------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 221 -----------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp -----------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred -----------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 3467777777777 666666777777888888888774 22221225677788888888877
Q ss_pred CcccCCcccccC-CCCCEEEccCCcccccCCCCC
Q 040297 627 LHGKIPSQLTVL-NTLAVFKVAYNNLSGKIPDRV 659 (773)
Q Consensus 627 l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~ 659 (773)
+.. +.+..+ ..+..|++++|++++..|..+
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence 322 233333 235666678888887777654
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4e-23 Score=222.57 Aligned_cols=246 Identities=19% Similarity=0.220 Sum_probs=164.2
Q ss_pred CcccccCCCCCcEEEcccccCCcccc----ccccCCCCCCeeeCcCCcCC---CCcchhh-------cCCCCCcEEEccc
Q 040297 310 IFSKKFNLTNLMRLQLDGNNFTGEIS----DSLSNCRLLAGLYLSDNHLS---GRIPRWL-------GNLSALEDIRMSN 375 (773)
Q Consensus 310 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~---~~~~~~~-------~~l~~L~~L~L~~ 375 (773)
++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34556778999999999999987644 44778999999999997543 4455544 7899999999999
Q ss_pred CcCCC----CccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCC---------CCeeEE
Q 040297 376 NNLEG----PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS---------PYLVTL 442 (773)
Q Consensus 376 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---------~~L~~L 442 (773)
|.+.+ .++..+..+++|+.|++++|.+....+..+ +..+..+ ++|++|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l-------------------~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-------------------ARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-------------------HHHHHHHHHHHHHHTCCCCCEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH-------------------HHHHHHHhhhhhcccCCCCcEE
Confidence 99987 366778889999999999998753322111 1112122 556666
Q ss_pred eCCCCccc-cccc---hhhhcCCCCcEEEccCccccc-----cCcccccCCCCCCEEEccCCcCC----CcCcchhhccC
Q 040297 443 DLSYNRFH-GSIP---NWINILPQLSSLLLGNNYIEG-----EIPVQLCELKEVRLIDLSHNNLS----GYIPACLVYTS 509 (773)
Q Consensus 443 ~Ls~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~p~~~~~~~ 509 (773)
++++|+++ +.++ ..+..+++|++|++++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-- 242 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-- 242 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--
Confidence 66666665 2233 344556666666666666652 22335666666777777776664 233333322
Q ss_pred cCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc----CCh
Q 040297 510 LGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE----IPT 585 (773)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~ 585 (773)
+++|+.|+|++|.+++. +|.
T Consensus 243 --------------------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 243 --------------------------------------------------------WPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp --------------------------------------------------------CTTCCEEECTTCCCCHHHHHHHHH
T ss_pred --------------------------------------------------------CCCcCEEECCCCCCchhhHHHHHH
Confidence 23666777777777654 455
Q ss_pred hhh--ccCCCCeEeCCCCcCCC----CCcccc-ccCccCCeeeCccccCcccCC
Q 040297 586 QIG--YLTRIHALNLSHNNLTG----TIPTTF-SNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 586 ~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~~~~p 632 (773)
.+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 553 37778888888888876 366666 567888888888888876653
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.1e-21 Score=196.17 Aligned_cols=201 Identities=12% Similarity=0.112 Sum_probs=143.5
Q ss_pred CceeEEECCCccccccchhhhcCCCCeeEEeCCCCc-cccccchhhhcCCCCcEEEccC-ccccccCcccccCCCCCCEE
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR-FHGSIPNWINILPQLSSLLLGN-NYIEGEIPVQLCELKEVRLI 490 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 490 (773)
+.++.|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 466677777777777666677778888888888886 7755556777788888888887 78876666777888888888
Q ss_pred EccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccccccccc
Q 040297 491 DLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMS 570 (773)
Q Consensus 491 ~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 570 (773)
++++|++++ +|. +..+. .++.|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~-------------------------------------------------------~L~~L~ 133 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVY-------------------------------------------------------STDIFF 133 (239)
T ss_dssp EEEEECCCS-CCC-CTTCC-------------------------------------------------------BCCSEE
T ss_pred eCCCCCCcc-ccc-ccccc-------------------------------------------------------cccccc
Confidence 888888775 443 22111 012234
Q ss_pred EEecccC-cCcccCChhhhccCCCC-eEeCCCCcCCCCCccccccCccCCeeeCcccc-CcccCCcccccC-CCCCEEEc
Q 040297 571 GIDLSCN-KLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-LHGKIPSQLTVL-NTLAVFKV 646 (773)
Q Consensus 571 ~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l-~~L~~L~l 646 (773)
.|++++| ++++..+..|..+++|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 8888888 88866666788888888 8888888888444444555 788888888884 887777778888 88888888
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNP 674 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np 674 (773)
++|++++..+. .+..++.+.+.+++
T Consensus 213 ~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 213 SQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCccccCChh---HhccCceeeccCcc
Confidence 88888754443 56666666666554
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=203.86 Aligned_cols=227 Identities=19% Similarity=0.175 Sum_probs=156.7
Q ss_pred CCCEEECCCCCCccccchhH--hhcCCCCCEEEccCCcCccCCccCc--cCCCCcCEEEccCCcCccCCc---hhHhhCC
Q 040297 172 DLKNADLSHLNLSGNFPNWL--VENNTNLETLLLANNSLFGSFRMPI--HSYQKLAILDVSKNFFQGHIP---VEIGTYL 244 (773)
Q Consensus 172 ~L~~L~L~~~~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l 244 (773)
.++.+.+.++.++......+ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46777777777654321111 1235679999999999988888877 888999999999999886544 1222247
Q ss_pred CCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCc--cchhH-hhcCCCccEEEcccCcCCCcCcc---cccCCC
Q 040297 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE--IPERM-ATGCFLLEILALSNNNLQGHIFS---KKFNLT 318 (773)
Q Consensus 245 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~ 318 (773)
++|++|++++|.+.+..+..|+.+++|++|++++|++.+. ++... ...+++|++|++++|.++..... .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999999999888888888999999999999987632 22211 23467777888888777642211 235667
Q ss_pred CCcEEEcccccCCccccccccCC---CCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEE
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNC---RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTIL 395 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 395 (773)
+|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 77777777777776666666555 57777777777777 4555443 6777777777777643 22 4566777777
Q ss_pred EccCCCCC
Q 040297 396 DLSNNAIF 403 (773)
Q Consensus 396 ~L~~n~l~ 403 (773)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777665
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.2e-22 Score=211.35 Aligned_cols=256 Identities=15% Similarity=0.187 Sum_probs=175.9
Q ss_pred CCccEEEcccCcCCCcCcccccCC--CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC-cchhhcCCCCCcE
Q 040297 294 FLLEILALSNNNLQGHIFSKKFNL--TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR-IPRWLGNLSALED 370 (773)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 370 (773)
..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34889999999887 4455556 8999999999999977665 56789999999999999865 7888999999999
Q ss_pred EEcccCcCCCCccccccCCCCCcEEEccCC-CCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCC-c
Q 040297 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNN-AIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN-R 448 (773)
Q Consensus 371 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~ 448 (773)
|++++|.+.+..+..+..+++|+.|++++| .+++. ..+..+.++++|++|++++| .
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTT
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCC
Confidence 999999998888888888999999999988 45421 12334455566666666666 5
Q ss_pred cccc-cchhhhcCC-CCcEEEccCc--ccc-ccCcccccCCCCCCEEEccCCc-CCCcCcchhhccCcCccccCCCCCCc
Q 040297 449 FHGS-IPNWINILP-QLSSLLLGNN--YIE-GEIPVQLCELKEVRLIDLSHNN-LSGYIPACLVYTSLGEDYHEEGPPTS 522 (773)
Q Consensus 449 l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~~~~~~~~~ 522 (773)
+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--------------- 245 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--------------- 245 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG---------------
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC---------------
Confidence 5543 345555566 6666666666 333 2344455566666666666666 44444433322
Q ss_pred cccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCc-CcccCChhhhccCCCCeEeCCCC
Q 040297 523 IWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK-LTGEIPTQIGYLTRIHALNLSHN 601 (773)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N 601 (773)
+++|+.|++++|. +.......++.+++|+.|++++|
T Consensus 246 -------------------------------------------l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 -------------------------------------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -------------------------------------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred -------------------------------------------CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2366666776663 22222235677788888888877
Q ss_pred cCCCCCccccccC-ccCCeeeCccccCcccCCccccc
Q 040297 602 NLTGTIPTTFSNL-KQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 602 ~l~~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
++ .+.+..+ .+++.|++++|++++..|..+..
T Consensus 283 -i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 -VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred -cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 33 2334444 34777778888888887776554
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8e-21 Score=191.27 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=58.9
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
+|+.|+|++|++++..+..|+.+++|++|+|++|.+++..+..|+.+++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555554444455555555555555
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 678 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~ 678 (773)
+|++++..|..+..+++++.+++.+||+.|.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555555554445555555555555555554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.3e-21 Score=200.09 Aligned_cols=208 Identities=17% Similarity=0.296 Sum_probs=110.0
Q ss_pred eeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcccc
Q 040297 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE 426 (773)
Q Consensus 347 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 426 (773)
+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+
T Consensus 24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~------------------- 80 (308)
T 1h6u_A 24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP------------------- 80 (308)
T ss_dssp HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred HHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-------------------
Confidence 3444555543322 3456677777777777764 33 46667777777777776654333
Q ss_pred ccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhh
Q 040297 427 GQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLV 506 (773)
Q Consensus 427 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 506 (773)
+..+++|++|++++|++++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++..+ +.
T Consensus 81 ------~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~ 148 (308)
T 1h6u_A 81 ------LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA 148 (308)
T ss_dssp ------GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred ------HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc
Confidence 34444455555555544432 2 344455555555555555432 2 24555555555555555543211 11
Q ss_pred ccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChh
Q 040297 507 YTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 586 (773)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 586 (773)
.+++|+.|++++|++++. +.
T Consensus 149 ----------------------------------------------------------~l~~L~~L~l~~n~l~~~-~~- 168 (308)
T 1h6u_A 149 ----------------------------------------------------------GLTNLQYLSIGNAQVSDL-TP- 168 (308)
T ss_dssp ----------------------------------------------------------GCTTCCEEECCSSCCCCC-GG-
T ss_pred ----------------------------------------------------------CCCCccEEEccCCcCCCC-hh-
Confidence 123555555555555532 22
Q ss_pred hhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 587 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 587 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
+..+++|+.|++++|.+++..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 5555666666666666653332 5556666666666666654432 5556666666666666554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=200.91 Aligned_cols=226 Identities=17% Similarity=0.143 Sum_probs=156.2
Q ss_pred CCcCEEEccCCcCccCCchhHh--hCCCCCcEEEccCCccCccCchhh--hCCCCCcEEEeecccCCCccc---hhHhhc
Q 040297 220 QKLAILDVSKNFFQGHIPVEIG--TYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERLDISYNQLTGEIP---ERMATG 292 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~ 292 (773)
..++.+.+.++.+....-..+. ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466777777665421111111 114679999999999998888887 889999999999999986544 222235
Q ss_pred CCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCcc--c--cccccCCCCCCeeeCcCCcCCCCcch----hhcC
Q 040297 293 CFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE--I--SDSLSNCRLLAGLYLSDNHLSGRIPR----WLGN 364 (773)
Q Consensus 293 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~ 364 (773)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 88999999999999888888888999999999999987652 2 2234678899999999999873 333 3567
Q ss_pred CCCCcEEEcccCcCCCCccccccCC---CCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeE
Q 040297 365 LSALEDIRMSNNNLEGPIPIEFCQL---DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVT 441 (773)
Q Consensus 365 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 441 (773)
+++|++|++++|.+.+..|..+..+ ++|+.|++++|.++. +|..+. ++|+.|++++|++++... +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~-~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP-AKLRVLDLSSNRLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC-SCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc-CCCCEEECCCCcCCCCch--hhhCCCccE
Confidence 7899999999999887777776665 588888888888773 343321 455555555555554311 334444444
Q ss_pred EeCCCCccc
Q 040297 442 LDLSYNRFH 450 (773)
Q Consensus 442 L~Ls~n~l~ 450 (773)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 444444443
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.9e-21 Score=191.36 Aligned_cols=178 Identities=17% Similarity=0.138 Sum_probs=83.6
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeeccc-CCCccchhHhhcCCCccEEEccc-CcCCCcCcccccCCCCCcEE
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQ-LTGEIPERMATGCFLLEILALSN-NNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 323 (773)
++++|++++|++++..+..|.++++|++|++++|. ++ .++...+..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666655555455555666666666554 44 44443333344444444444 44444333344444444444
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCc---EEEcccC-cCCCCccccccCCCCCc-EEEcc
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALE---DIRMSNN-NLEGPIPIEFCQLDYLT-ILDLS 398 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~ 398 (773)
++++|+++ + +|. +..+++|+ +|++++| .+.+..+..|.++++|+ .|+++
T Consensus 111 ~l~~n~l~------------------------~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 111 GIFNTGLK------------------------M-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEECCC------------------------S-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred eCCCCCCc------------------------c-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 44444443 2 222 33334443 5555555 44443344455555555 55555
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCcc-ccccchhhhcCC-CCeeEEeCCCCccc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNK-IEGQLESIIHDS-PYLVTLDLSYNRFH 450 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~Ls~n~l~ 450 (773)
+|.++...+..+..++|+.|++++|+ +++..+..|.++ ++|++|++++|+++
T Consensus 165 ~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp SCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 55554322223323344444444442 444444444444 44444444444444
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6.4e-20 Score=190.41 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=99.2
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEE
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 274 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 274 (773)
+++|++|++++|.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. + .+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 44555555555554332 1 3444555555555555554 2333 22345555555555555432 2 35555555555
Q ss_pred EeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcC
Q 040297 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 275 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
++++|.++ .++. +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+
T Consensus 113 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 55555555 3332 2335555555555555554332 4455556666666665553222 55556666666666666
Q ss_pred CCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 54332 5555666666666666654332 555666666666666554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=9.6e-20 Score=192.96 Aligned_cols=241 Identities=20% Similarity=0.164 Sum_probs=157.5
Q ss_pred CEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE-EEc
Q 040297 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI-LAL 301 (773)
Q Consensus 223 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L 301 (773)
++++.++++++ .+|..+. +++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|...+.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 7776542 477888888888876555677778888888888887765666665555555443 344
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEccc-CcCCC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN-NNLEG 380 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~ 380 (773)
+.|+++.+.+..|..+++|++|++++|+++...+ ..+....++..+++.+ +.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------------------------VHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------------------------CTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCc------------------------hhhcccchhhhhhhcccccccc
Confidence 4555555555555555555555555555553333 3333334444555543 33433
Q ss_pred CccccccCC-CCCcEEEccCCCCCCCCCCCCCCCceeEEECCC-ccccccchhhhcCCCCeeEEeCCCCccccccchhhh
Q 040297 381 PIPIEFCQL-DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK-NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458 (773)
Q Consensus 381 ~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 458 (773)
..+..|..+ ..++.|++++|.++...+..+....++++++.+ |.++.+.+.+|.++++|++||+++|+++...+..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-- 221 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-- 221 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence 333344444 356777888888776666667777788888864 6677777778889999999999999998543333
Q ss_pred cCCCCcEEEccCccccccCcccccCCCCCCEEEccCC
Q 040297 459 ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495 (773)
Q Consensus 459 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 495 (773)
+.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5567777766655444666 4788999999998754
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3e-20 Score=182.61 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=91.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..|..|..+++|++|+|++|.|++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 36666667777776666777777888888888888888666666778888888888888888777888888888888888
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|++++..+..+..+++++.+++.+|||.|+|.+.
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 888888877777777888888888888888988654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2e-20 Score=208.18 Aligned_cols=115 Identities=21% Similarity=0.379 Sum_probs=61.4
Q ss_pred CCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCC
Q 040297 367 ALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSY 446 (773)
Q Consensus 367 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~ 446 (773)
+++.|++++|.+.+ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.++++ |. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCC
Confidence 67777777777765 44433 256677777777665 333 2245555666665555552 22 322 555555555
Q ss_pred CccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCC
Q 040297 447 NRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 447 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 55554 333 34555555555555553 332 34455555555555543
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.6e-20 Score=198.16 Aligned_cols=181 Identities=20% Similarity=0.198 Sum_probs=124.8
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCccccc-CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC-ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEG 518 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~ 518 (773)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. .+++|+.|+|++|++++..+..+..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 86 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence 35666666665 3444332 3466777777777766555565 6777777777777776544443332
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeC
Q 040297 519 PPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598 (773)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 598 (773)
+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 87 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 87 -----------------------------------------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 346777777777777666667778888888888
Q ss_pred CCCcCCCCCccccccCccCCeeeCccccCcccCCccc---ccCCCCCEEEccCCcccccCCCCCccccc--CCcCcccCC
Q 040297 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL---TVLNTLAVFKVAYNNLSGKIPDRVAQFST--FEEDSYEGN 673 (773)
Q Consensus 599 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l---~~l~~L~~L~ls~N~l~~~~p~~~~~~~~--l~~~~l~~N 673 (773)
++|.|++..|..|.++++|+.|+|++|++++..+..+ ..+++|+.|++++|++++..+..+..++. ++.+++.+|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 8888887777788888888888888888886555555 56788888888888888655554555554 367889999
Q ss_pred CCCCCCCC
Q 040297 674 PFLCGWPL 681 (773)
Q Consensus 674 p~lC~~~l 681 (773)
||.|+|.+
T Consensus 200 ~~~C~C~l 207 (361)
T 2xot_A 200 PLECDCKL 207 (361)
T ss_dssp CEECCHHH
T ss_pred CccCCcCc
Confidence 99999854
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=178.82 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=77.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..+..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|..+++|+.|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 35566666666666555556666666667777777666666666666667777777777766666666666667777777
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|++++..|..+..+++++.+++++|||.|+|++
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 77777666666666666667777777777777654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.3e-19 Score=190.00 Aligned_cols=201 Identities=18% Similarity=0.154 Sum_probs=131.0
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcE-EEc
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMD-LNL 252 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L 252 (773)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|...+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46677777776 677654 3578888998888877666678888888888888888876777777766777665 556
Q ss_pred cCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc-CcCCCcCcccccCCC-CCcEEEcccccC
Q 040297 253 SRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN-NNLQGHIFSKKFNLT-NLMRLQLDGNNF 330 (773)
Q Consensus 253 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l 330 (773)
+.|+++...|.+|..+++|++|++++|+++ .+|...+....++..|++.+ +.+....+..|..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678888777888888888888888888887 55554443345566666644 455554444444443 456666666666
Q ss_pred CccccccccCCCCCCeeeCcC-CcCCCCcchhhcCCCCCcEEEcccCcCCC
Q 040297 331 TGEISDSLSNCRLLAGLYLSD-NHLSGRIPRWLGNLSALEDIRMSNNNLEG 380 (773)
Q Consensus 331 ~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 380 (773)
+.+ +.......+|+.+++++ |.++...+.+|..+++|++|++++|+++.
T Consensus 167 ~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 167 QEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp CEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred cCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 633 32222334566666653 44443333445555666666666666553
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.7e-19 Score=173.54 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=98.9
Q ss_pred CeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 438 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------- 98 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK---------- 98 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC----------
Confidence 4555555555555444444555566666666666665444444556666666666666665333322221
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEe
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (773)
+++|++|++++|++++..+..+..+++|++|+
T Consensus 99 ------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 99 ------------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 23666667777766655555567777777777
Q ss_pred CCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCccc
Q 040297 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662 (773)
Q Consensus 598 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 662 (773)
|++|.+++..+..|..+++|+.|++++|++.+. +++|+.|+++.|+++|.+|..++.+
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccc
Confidence 777777766666677777777777777776643 3467777777777777777655433
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=7.3e-19 Score=173.89 Aligned_cols=112 Identities=22% Similarity=0.316 Sum_probs=57.6
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
+|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 3444444444444333333445555555555555555444444555555555555555555 445555555555555555
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+|++++..+..+..+++++.+++.+||+.|+|+
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 555555444444555555555555566666553
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=8.3e-19 Score=171.05 Aligned_cols=151 Identities=21% Similarity=0.185 Sum_probs=74.5
Q ss_pred EEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCC
Q 040297 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNA 401 (773)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 401 (773)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4455555544 233322 2345555555555554444444555555555555555544333334444444444444444
Q ss_pred CCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccc
Q 040297 402 IFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481 (773)
Q Consensus 402 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 481 (773)
++ +..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 88 l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 88 LQ-----------------------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CC-----------------------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 43 3333334445555555555555554444445555555555555555554444445
Q ss_pred cCCCCCCEEEccCCcCC
Q 040297 482 CELKEVRLIDLSHNNLS 498 (773)
Q Consensus 482 ~~l~~L~~L~L~~N~l~ 498 (773)
..+++|+.|++++|.+.
T Consensus 145 ~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCTTCCEEECCSCCBC
T ss_pred ccCCCccEEEecCCCee
Confidence 55555555555555544
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=9.1e-19 Score=194.89 Aligned_cols=134 Identities=23% Similarity=0.328 Sum_probs=88.0
Q ss_pred CCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCC
Q 040297 343 LLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK 422 (773)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 422 (773)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 67777777777765 45434 256777777777776 444 345677777777777766 444 22 2777777777
Q ss_pred ccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 423 NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 423 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
|.++++.+ .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. +. ++|+.|++++|+|+
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 77776433 46677777777777774 444 45677777777777775 454 44 66777777777665
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=168.80 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=120.3
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEG 518 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~ 518 (773)
+.+++++|.++ .+|..+ .+.+++|++++|++++..+ ..+..+++|+.|++++|++++..+..+..
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 36677777766 345433 2356777777777776544 34677788888888888877655544432
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeC
Q 040297 519 PPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598 (773)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 598 (773)
+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 80 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 80 -----------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 347888888888888777777888999999999
Q ss_pred CCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 599 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
++|.|++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999998888889999999999999999998888899999999999999999886554
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=3.7e-18 Score=167.62 Aligned_cols=153 Identities=23% Similarity=0.263 Sum_probs=111.9
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGP 519 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~ 519 (773)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|+.|+|++|++++..|..+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 35666666666 3444332 56777777777777666666777777777777777777655555443
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCC
Q 040297 520 PTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 599 (773)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 599 (773)
+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 79 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 79 ----------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp ----------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 3477777788887775555557788888888888
Q ss_pred CCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 600 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 600 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
+|.|++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 888888778888888888888888888888777778888888888888888764
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.4e-17 Score=171.18 Aligned_cols=151 Identities=27% Similarity=0.403 Sum_probs=91.1
Q ss_pred hcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCc
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGE 512 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 512 (773)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++ + +.+..+++|+.|++++|++++. + .+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~-~-~l~------ 131 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI-N-GLV------ 131 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC-G-GGG------
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC-h-hhc------
Confidence 3445555555555555554332 5555666666666666553 2 2356666666666666666532 1 111
Q ss_pred cccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCC
Q 040297 513 DYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 592 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 592 (773)
.+++|+.|++++|++++. ..++.+++
T Consensus 132 ----------------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~ 157 (291)
T 1h6t_A 132 ----------------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTK 157 (291)
T ss_dssp ----------------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred ----------------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCC
Confidence 134666677777766643 45667777
Q ss_pred CCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 593 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 593 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
|++|+|++|.+++..| +..+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 158 L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7777777777775444 67777777777777777653 3 36777777777777777665
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.8e-17 Score=163.87 Aligned_cols=155 Identities=23% Similarity=0.238 Sum_probs=114.0
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGP 519 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~ 519 (773)
+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~------------ 86 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS------------ 86 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc------------
Confidence 45666666665 4444332 67777777777777766777777777777777777775433332222
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCC
Q 040297 520 PTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 599 (773)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 599 (773)
+++|+.|+|++|++++..+..|..+++|++|+|+
T Consensus 87 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 87 ----------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp ----------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 3477788888888886666667888888888888
Q ss_pred CCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 600 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 600 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
+|+|+ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 121 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 88888 678888888888888888888887777778888888888888888876544
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3.2e-17 Score=168.48 Aligned_cols=169 Identities=25% Similarity=0.293 Sum_probs=81.9
Q ss_pred cCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcE
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 273 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 273 (773)
.+++|++|++++|.+.+. ..+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 456677777777766543 235556666666666666652 333 2335566666666666553 2 23555566666
Q ss_pred EEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc
Q 040297 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353 (773)
Q Consensus 274 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 353 (773)
|++++|.++ .++. +..+++|+.|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.
T Consensus 117 L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666555 3321 22344555555555544443 233444444444444444443222 3444444444444444
Q ss_pred CCCCcchhhcCCCCCcEEEcccCcC
Q 040297 354 LSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 354 l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
+++. + .+..+++|+.|++++|.+
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred CCCC-h-hhccCCCCCEEECcCCcc
Confidence 4321 1 133344444444444433
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=177.69 Aligned_cols=176 Identities=24% Similarity=0.183 Sum_probs=106.2
Q ss_pred CEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhh-CCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA-DMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 223 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..|. ++++|++|+|++|+++ .++...+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 45566666655 4554432 3466666666666655555555 6666666666666666 454444445666666666
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhh---cCCCCCcEEEcccCcC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL---GNLSALEDIRMSNNNL 378 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l 378 (773)
++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..| ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6666666555556666667777777776666666666666777777777777665444444 4466677777777776
Q ss_pred CCCccccccCCCCC--cEEEccCCCCC
Q 040297 379 EGPIPIEFCQLDYL--TILDLSNNAIF 403 (773)
Q Consensus 379 ~~~~~~~~~~l~~L--~~L~L~~n~l~ 403 (773)
.+..+..+..++.+ +.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 65554555555542 55666666543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=4.3e-17 Score=183.60 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=59.7
Q ss_pred cEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCc
Q 040297 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR 448 (773)
Q Consensus 369 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 448 (773)
..+.+..+.+.+..+ +..++.|+.|++++|.+... +....+++|+.|++++|.+.+..+ +..+++|+.|+|++|.
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 334444454443222 34566777777777776532 333334555555555555554443 4455555555555555
Q ss_pred cccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 449 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
+.+ ++ .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.++
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 543 12 344445555555555554431 23444444444444444444
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.8e-17 Score=158.94 Aligned_cols=115 Identities=23% Similarity=0.352 Sum_probs=107.9
Q ss_pred cccEEecccCcCcccCCh-hhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 568 SMSGIDLSCNKLTGEIPT-QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
+++.|++++|++++..+. .|+.+++|++|+|++|.|++..|..|+++++|+.|+|++|++++..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788999999999976664 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|++++.+|..+..+++++.+++++|||.|+|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 999999999999999999999999999999999753
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=159.43 Aligned_cols=115 Identities=23% Similarity=0.375 Sum_probs=108.8
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
+++++|++++|+++ .+|..|..+++|++|+|++|.|++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47899999999999 78899999999999999999999888899999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|++++..+..+..++.++.+++++|||.|+|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999888888889999999999999999999754
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=5.2e-17 Score=182.92 Aligned_cols=172 Identities=25% Similarity=0.302 Sum_probs=106.4
Q ss_pred hcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCc
Q 040297 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 272 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 272 (773)
..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|.+.+ +| .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 3456666666666666443 2 35566666666666666663 333 2336667777777766663 22 566667777
Q ss_pred EEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCC
Q 040297 273 RLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352 (773)
Q Consensus 273 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 352 (773)
+|+|++|.+. .++. +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 7777777766 3432 23466677777777766654 455666777777777777765544 666677777777777
Q ss_pred cCCCCcchhhcCCCCCcEEEcccCcCCC
Q 040297 353 HLSGRIPRWLGNLSALEDIRMSNNNLEG 380 (773)
Q Consensus 353 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 380 (773)
.+++. ..+..+++|+.|+|++|.+.+
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 76643 246666777777777776654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.5e-17 Score=157.83 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=114.0
Q ss_pred cCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcc
Q 040297 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 513 (773)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 34567788888888887 445 5777888888888888665 2346778888888888888887655544332
Q ss_pred ccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCC
Q 040297 514 YHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 593 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 593 (773)
+++|+.|++++|++++..|..++.+++|
T Consensus 111 ----------------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 111 ----------------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred ----------------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 3478888888888887778888888888
Q ss_pred CeEeCCCCc-CCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 594 HALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 594 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
++|++++|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus 139 ~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 888888887 55 555 578888888888888888753 3 67888888888888888753
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3e-17 Score=165.85 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=133.9
Q ss_pred CceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEc
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDL 492 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 492 (773)
..+..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555666667666554 45677888899999998884 45 67888999999999999886544 888999999999
Q ss_pred cCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEE
Q 040297 493 SHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 572 (773)
Q Consensus 493 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 572 (773)
++|++++. |... .++|+.|
T Consensus 93 ~~N~l~~l-~~~~------------------------------------------------------------~~~L~~L 111 (263)
T 1xeu_A 93 NRNRLKNL-NGIP------------------------------------------------------------SACLSRL 111 (263)
T ss_dssp CSSCCSCC-TTCC------------------------------------------------------------CSSCCEE
T ss_pred CCCccCCc-Cccc------------------------------------------------------------cCcccEE
Confidence 99988752 2100 0378899
Q ss_pred ecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccc
Q 040297 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 573 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
++++|++++ ++ .++.+++|++|+|++|++++. | .++.+++|+.|++++|++++. ..+..+++|+.|++++|+++
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 999999985 33 588899999999999999864 4 688999999999999999876 67888999999999999988
Q ss_pred ccC
Q 040297 653 GKI 655 (773)
Q Consensus 653 ~~~ 655 (773)
+..
T Consensus 186 ~~~ 188 (263)
T 1xeu_A 186 NEP 188 (263)
T ss_dssp CCC
T ss_pred CCc
Confidence 763
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.3e-19 Score=202.95 Aligned_cols=122 Identities=23% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCC
Q 040297 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSG 541 (773)
Q Consensus 462 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (773)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------- 484 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------------------------- 484 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------------------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------------------------
Confidence 46777777777764 454 667777777777777766 45554433
Q ss_pred CCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCC-ccccccCccCCee
Q 040297 542 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI-PTTFSNLKQIESL 620 (773)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 620 (773)
+++|+.|+|++|+|++ +| .++.+++|++|+|++|.|++.+ |..|+.+++|+.|
T Consensus 485 ------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 485 ------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp ------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 2366666777776664 55 6777777777777777777665 7777777777777
Q ss_pred eCccccCcccCCc---ccccCCCCCEEEc
Q 040297 621 DLSYNLLHGKIPS---QLTVLNTLAVFKV 646 (773)
Q Consensus 621 dLs~N~l~~~~p~---~l~~l~~L~~L~l 646 (773)
+|++|++++.+|. .+..+++|+.||+
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777777766542 2334667777653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.6e-16 Score=150.81 Aligned_cols=112 Identities=26% Similarity=0.393 Sum_probs=76.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|++|+|++|++++..|..|+.+++|++|+|++|+|++..|..|+++++|+.|||++|++++.+|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 46667777777777666777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCcccccCCCCCcccc-cCCcCcccCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~-~l~~~~l~~Np~lC~~~ 680 (773)
++|++.+..+- ..+. .++...+.++...|+.|
T Consensus 134 ~~N~l~c~c~l--~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHL--AWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGG--HHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcc--hHHHHHHHHcCCCCCCCCCCCC
Confidence 77777765542 1121 12223445555566544
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2e-17 Score=173.62 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=62.5
Q ss_pred CCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCee-EEeCCCCccccccchhhhcCCCCcEE
Q 040297 389 LDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLV-TLDLSYNRFHGSIPNWINILPQLSSL 466 (773)
Q Consensus 389 l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L 466 (773)
+++|+.+++++|.++...+..|. +.+|+.+++.+| +..+.+.+|.+|++|+ .+++.+ .++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 45555555555555544444443 455555555555 5555566666777776 777766 5554555667777777777
Q ss_pred EccCccccccCcccccCCCCCCEEE
Q 040297 467 LLGNNYIEGEIPVQLCELKEVRLID 491 (773)
Q Consensus 467 ~L~~n~l~~~~~~~~~~l~~L~~L~ 491 (773)
++.+|.++...+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777666666677777777664
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.9e-16 Score=151.40 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEE
Q 040297 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ 324 (773)
Q Consensus 245 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 324 (773)
++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34555555555544 223 3445555555555555443 222 1 22345555555555555544444555556666666
Q ss_pred cccccCCccccccccCCCCCCeeeCcCCc-CCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 325 LDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 325 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
+++|++++..+..++.+++|+.|++++|. +. .+| .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 66666655555555666666666666665 43 333 455566666666666666532 2 4555666666666666543
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.7e-18 Score=191.16 Aligned_cols=183 Identities=21% Similarity=0.241 Sum_probs=140.8
Q ss_pred CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCc-------------cccccchhhhcCCCCcEEE-ccCccccccC
Q 040297 412 PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR-------------FHGSIPNWINILPQLSSLL-LGNNYIEGEI 477 (773)
Q Consensus 412 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~ 477 (773)
.+.|+.|++++|.++ .+|..+..+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+....
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 566777777777775 456777777788888876664 4556677777777888777 5555432110
Q ss_pred c-----cccc--CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceE
Q 040297 478 P-----VQLC--ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETV 550 (773)
Q Consensus 478 ~-----~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (773)
. ..+. ....|+.|++++|.+++ +|. +..
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~------------------------------------------- 461 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ------------------------------------------- 461 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG-------------------------------------------
T ss_pred hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc-------------------------------------------
Confidence 0 0000 01258899999999986 454 433
Q ss_pred EEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 551 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 551 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|.|++ +| .|+++++|+.|+|++|++++.
T Consensus 462 ---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 462 ---------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp ---------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred ---------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 458999999999999 889999999999999999999996 67 899999999999999999988
Q ss_pred C-CcccccCCCCCEEEccCCcccccCCCC
Q 040297 631 I-PSQLTVLNTLAVFKVAYNNLSGKIPDR 658 (773)
Q Consensus 631 ~-p~~l~~l~~L~~L~ls~N~l~~~~p~~ 658 (773)
+ |..+..+++|+.|++++|++++.+|..
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 7 999999999999999999999887753
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.5e-16 Score=166.76 Aligned_cols=125 Identities=15% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCCCCEEEccCCcCccCCccCccC-CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhC------
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHS-YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD------ 267 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------ 267 (773)
+.++++|.++++ +.......+.. +++|++|||++|++.. .... ...++.+..+.+..+. ..+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~-~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGK-AGTYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEES-SSSSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCc-cccccccccccccccc---cCHHHhcccccccc
Confidence 456777777654 21111112222 5667777777776651 1100 0012223344444442 22344555
Q ss_pred --CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEccc
Q 040297 268 --MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG 327 (773)
Q Consensus 268 --l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 327 (773)
|++|++|++.+ .++ .++...|.+|++|+.+++++|.+..+.+..|.++.++..+....
T Consensus 98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77777777766 565 66666666667777777777666666666666665555555444
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=4e-17 Score=188.73 Aligned_cols=187 Identities=22% Similarity=0.222 Sum_probs=90.2
Q ss_pred CCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCC
Q 040297 366 SALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS 445 (773)
Q Consensus 366 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 445 (773)
+.++.|++.+|.+.. .+. ..++.++|+.|.+. .+++..|.+. ..+..+..++.|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~-------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSID-------------EDDDIENRMV-MPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCccccc-------------Ccccccccee-cChhhhccCCCCcEEECC
Confidence 456777777777664 222 23344555555443 2233333333 345556666777777777
Q ss_pred CCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCcccc
Q 040297 446 YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWC 525 (773)
Q Consensus 446 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 525 (773)
+|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..+..
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------ 291 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS------------------ 291 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG------------------
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC------------------
Confidence 77766 45555556677777777777776 56666777777777777777776 55555443
Q ss_pred ccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCC
Q 040297 526 DRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 605 (773)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 605 (773)
+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|++
T Consensus 292 ----------------------------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 ----------------------------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ----------------------------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ----------------------------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 236677777777776 566667777777777777777777
Q ss_pred CCccccccCcc-CCeeeCccccCcccCCcc
Q 040297 606 TIPTTFSNLKQ-IESLDLSYNLLHGKIPSQ 634 (773)
Q Consensus 606 ~~p~~~~~l~~-L~~LdLs~N~l~~~~p~~ 634 (773)
.+|..+..+.. +..++|++|.+++.+|..
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 66666654422 223667777777666654
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2e-16 Score=159.84 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=96.8
Q ss_pred ccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEccc
Q 040297 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375 (773)
Q Consensus 296 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 375 (773)
+..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L-- 92 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV-- 92 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC--
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC--
Confidence 444455555554332 23445555555555555542 22 34445555555555555543322 444444555554
Q ss_pred CcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccch
Q 040297 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN 455 (773)
Q Consensus 376 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 455 (773)
++|.+++..+ ... ++|+.|++++|.+++. ..+..+++|++|++++|++++. +
T Consensus 93 ----------------------~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~- 144 (263)
T 1xeu_A 93 ----------------------NRNRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V- 144 (263)
T ss_dssp ----------------------CSSCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-
T ss_pred ----------------------CCCccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-
Confidence 4444443221 111 5566666666666554 2366777788888888887754 3
Q ss_pred hhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCc
Q 040297 456 WINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500 (773)
Q Consensus 456 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 500 (773)
.+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 577778888888888888765 5677788888888888887654
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=8.1e-17 Score=186.19 Aligned_cols=224 Identities=21% Similarity=0.211 Sum_probs=109.4
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
+.++.|++.+|.+.. .+. ..++.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 456667776666653 222 223444444444332 223334443 44556667777777777
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 477 (773)
++|.+....+..+.++.|+.|+|++|.++ .+|..+.++++|++|+|++|+++ .+|..++.+++|++|+|++|.++ .+
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 77777644445555677777777777777 55667788899999999999998 67888899999999999999987 67
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
|..|..+++|+.|+|++|++++.+|..+....
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~------------------------------------------------ 340 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS------------------------------------------------ 340 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH------------------------------------------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcc------------------------------------------------
Confidence 87899999999999999999988887765432
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCC--------cCCCCCccccccCccCCeeeCccccCc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN--------NLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.....++|++|.+++.+|.. |+.|++++| .+.+..+..+.++..++...+++|-+.
T Consensus 341 ---------~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 341 ---------VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------HHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred ---------hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 02224678888888877764 445566666 344444444555666666666666654
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=1.6e-15 Score=143.38 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=105.7
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++++.|++++|++++..+..++.+++|++|++++|.+++..+..|+.+++|+.|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 48899999999999777777899999999999999999877788999999999999999999888888999999999999
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++|++++..+..+..++.++.+++++||+.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998888777889999999999999999886
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=1.1e-14 Score=155.69 Aligned_cols=266 Identities=9% Similarity=0.074 Sum_probs=150.1
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEE
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 274 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 274 (773)
+..++.+.+.++ ++.+....|.++ +|+.+++..+ ++ .++...|..+ +|+.+.+.+ .++...+.+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 355566665443 444444455543 5666666554 44 4555555443 566666654 4554555666667777777
Q ss_pred EeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcC
Q 040297 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 275 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
++++|.++ .++...|. +.+|+.+.+..+ +..+....|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 77666666 66666655 456666666533 44444555555666666666543 33333444444 445555552 233
Q ss_pred CCCcchhhcCCCCCcEEEcccCcCC-----CCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccc
Q 040297 355 SGRIPRWLGNLSALEDIRMSNNNLE-----GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQL 429 (773)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 429 (773)
+.....+|.++++|+.+++.+|.+. ...+.+|.+| ++|+.+.+. +.+..+.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c-----------------------~~L~~l~l~-~~i~~I~ 315 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC-----------------------PKLARFEIP-ESIRILG 315 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC-----------------------TTCCEECCC-TTCCEEC
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC-----------------------ccCCeEEeC-CceEEEh
Confidence 3333445555555555555544432 1223334444 445555554 2344555
Q ss_pred hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC-CCCEEEccCCcCC
Q 040297 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK-EVRLIDLSHNNLS 498 (773)
Q Consensus 430 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 498 (773)
..+|.+|++|+.+++..+ ++......|.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 566777777777777554 554555677777 788888888777665666677764 6777777766543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.6e-15 Score=140.65 Aligned_cols=87 Identities=22% Similarity=0.219 Sum_probs=54.9
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCC-ccccccCccCCeeeCccccCcccCC---cccccCCCCC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIP---SQLTVLNTLA 642 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 642 (773)
++|+.|++++|++++.+|..+..+++|++|+|++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 35566666666666555666666666777777777666432 1566666777777777777665544 4666667777
Q ss_pred EEEccCCcccc
Q 040297 643 VFKVAYNNLSG 653 (773)
Q Consensus 643 ~L~ls~N~l~~ 653 (773)
+|++++|.+..
T Consensus 151 ~L~l~~n~~~~ 161 (168)
T 2ell_A 151 YLDGYDREDQE 161 (168)
T ss_dssp EETTEETTSCB
T ss_pred EecCCCCChhh
Confidence 77777766653
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.1e-15 Score=141.35 Aligned_cols=138 Identities=22% Similarity=0.195 Sum_probs=114.0
Q ss_pred CCCCeeEEeCCCCccc-cccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcc
Q 040297 435 DSPYLVTLDLSYNRFH-GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513 (773)
Q Consensus 435 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 513 (773)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3478999999999998 67788888899999999999999865 67889999999999999998766665543
Q ss_pred ccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccC-ChhhhccCC
Q 040297 514 YHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI-PTQIGYLTR 592 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~ 592 (773)
+++|+.|++++|++++.. +..+..+++
T Consensus 94 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 94 ----------------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp ----------------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred ----------------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 348899999999998542 277889999
Q ss_pred CCeEeCCCCcCCCCCc---cccccCccCCeeeCccccCcccCCc
Q 040297 593 IHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPS 633 (773)
Q Consensus 593 L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~ 633 (773)
|++|++++|.+++..+ ..|..+++|+.||+++|.+. .+|+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999999996655 57889999999999999887 3443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.1e-15 Score=138.15 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=57.5
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCC-CccccccCccCCeeeCccccCcccCC---cccccCCCCC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGKIP---SQLTVLNTLA 642 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 642 (773)
++|+.|++++|++++.+|..++.+++|++|++++|.+++. .|..++.+++|+.|++++|++++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 4667777777777765666666777777777777777753 33667777777777777777776655 5677777777
Q ss_pred EEEcc
Q 040297 643 VFKVA 647 (773)
Q Consensus 643 ~L~ls 647 (773)
.||++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 77765
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=3e-15 Score=140.13 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=102.0
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
..+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|+.|||++|++++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999999 5787664 899999999999999889999999999999999999998888889999999999999
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+|++++..|..+..+.+++.+++++||+.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999888888999999999999999999985
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=2.3e-14 Score=153.25 Aligned_cols=257 Identities=9% Similarity=0.068 Sum_probs=184.3
Q ss_pred CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 219 YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
+..++.+.+.++ ++ .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 466777777653 44 5666666654 7888888665 665666677774 688888875 565 677777777888888
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
+++++|.++.+....|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88888888776666665 578888888744 66566677888888888888764 44444556666 677777774 445
Q ss_pred CCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh
Q 040297 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458 (773)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 458 (773)
......+|.+|++|+.+++.+|.+. .+....+.+.+|.+|++|+.+++.+ .++......|.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFN------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCC------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred cEEChhHhhCCCCCCEEEeCCcccc------------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 5455667777777777777766543 1122245667899999999999994 47766678899
Q ss_pred cCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhcc
Q 040297 459 ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYT 508 (773)
Q Consensus 459 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 508 (773)
++++|+.+.+..+ ++.....+|.++ +|+.+++++|.+....+..|..+
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 9999999999665 776777889999 99999999998875544444443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=139.07 Aligned_cols=87 Identities=26% Similarity=0.280 Sum_probs=70.3
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..+..|..+++|++|+|++|.|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 36777777777777666677888888888888888888777778888888888888888888777777888888888888
Q ss_pred cCCcccc
Q 040297 647 AYNNLSG 653 (773)
Q Consensus 647 s~N~l~~ 653 (773)
++|++..
T Consensus 134 ~~N~~~C 140 (193)
T 2wfh_A 134 GANPLYC 140 (193)
T ss_dssp CSSCEEC
T ss_pred CCCCeec
Confidence 8888764
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.5e-15 Score=136.68 Aligned_cols=129 Identities=21% Similarity=0.220 Sum_probs=107.8
Q ss_pred CCCeeEEeCCCCccc-cccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccc
Q 040297 436 SPYLVTLDLSYNRFH-GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDY 514 (773)
Q Consensus 436 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~ 514 (773)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 367888888888887 67777788889999999999998865 67888999999999999998766665543
Q ss_pred cCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc-CChhhhccCCC
Q 040297 515 HEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE-IPTQIGYLTRI 593 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 593 (773)
+++|+.|++++|++++. .|..++.+++|
T Consensus 87 ---------------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 87 ---------------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp ---------------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 34889999999999863 34789999999
Q ss_pred CeEeCCCCcCCCCCc---cccccCccCCeeeCcc
Q 040297 594 HALNLSHNNLTGTIP---TTFSNLKQIESLDLSY 624 (773)
Q Consensus 594 ~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~ 624 (773)
++|++++|.+++..+ ..++.+++|+.||+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999997766 5789999999999874
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.8e-14 Score=136.13 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=67.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|++|++++|++++..+..++.+++|++|+|++|.+++..+..|+++++|+.|++++|++++..+..+..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 36666777777776555556677788888888888888766667778888888888888887666666777888888888
Q ss_pred cCCcccccCC
Q 040297 647 AYNNLSGKIP 656 (773)
Q Consensus 647 s~N~l~~~~p 656 (773)
++|++.+..|
T Consensus 132 ~~N~~~~~~~ 141 (177)
T 2o6r_A 132 HTNPWDCSCP 141 (177)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCeeccCc
Confidence 8888776655
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=1.1e-14 Score=136.66 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=99.8
Q ss_pred cEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCC
Q 040297 570 SGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649 (773)
Q Consensus 570 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 649 (773)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999997 7887765 89999999999999988999999999999999999999887778899999999999999
Q ss_pred cccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 650 NLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 650 ~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++++..+..+..+++++.+++.+||+.|.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9998888778899999999999999999985
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=1.4e-13 Score=148.00 Aligned_cols=335 Identities=13% Similarity=0.084 Sum_probs=204.8
Q ss_pred CccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCC
Q 040297 27 FTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSN 106 (773)
Q Consensus 27 l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~ 106 (773)
++ +|...+|.+|++|+.+++..+ ++.. -..+|.++++|+.+++.++ ++ .|+..+|..+.+|+.+.+. .
T Consensus 59 Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p-------~ 126 (394)
T 4fs7_A 59 VV-SIGYAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP-------L 126 (394)
T ss_dssp EE-EECTTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC-------T
T ss_pred Ee-EhHHHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc-------C
Confidence 44 677778888999999988744 5543 2456888899999988765 33 5666688888888887765 2
Q ss_pred CcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccc
Q 040297 107 NHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186 (773)
Q Consensus 107 n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~ 186 (773)
+.. .+....+.++..+...... .+.. ....+|.+|++|+.+.+..+- . .
T Consensus 127 -~l~--~i~~~aF~~~~~~~~~~~~----------------~~~~----------i~~~aF~~c~~L~~i~l~~~~-~-~ 175 (394)
T 4fs7_A 127 -MLK--SIGVEAFKGCDFKEITIPE----------------GVTV----------IGDEAFATCESLEYVSLPDSM-E-T 175 (394)
T ss_dssp -TCC--EECTTTTTTCCCSEEECCT----------------TCCE----------ECTTTTTTCTTCCEEECCTTC-C-E
T ss_pred -cee--eecceeeecccccccccCc----------------cccc----------cchhhhcccCCCcEEecCCcc-c-e
Confidence 111 1111233333322211111 1111 112356677777777776542 2 3
Q ss_pred cchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhh
Q 040297 187 FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 266 (773)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 266 (773)
++...|.++++|+.+.+..+ +.......|..+..|+.+.+..+... +....+. ..+|+.+.+... ++.....+|.
T Consensus 176 I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~ 250 (394)
T 4fs7_A 176 LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFY 250 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTT
T ss_pred eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceeccccccc
Confidence 55555677777877777665 44444556777777777776655432 2222332 457777777543 3334455677
Q ss_pred CCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCe
Q 040297 267 DMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAG 346 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 346 (773)
++..|+.+.+..+.. .++...+..+..++.+....+.+. ...|..+.+|+.+.+.++ ++.+...+|.++++|+.
T Consensus 251 ~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 777888887766643 455566666777777776665433 345667777888777654 55455667778888888
Q ss_pred eeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEE
Q 040297 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQV 418 (773)
Q Consensus 347 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 418 (773)
+++..+ ++.....+|.++.+|+.+++..+ +......+|.+|.+|+.+++..+- ......+..+++|+.+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-GGGGGGBCTTCEEEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-EEhhheecCCCCCcEE
Confidence 887643 55455567778888888888765 554556678888888888886542 2111122235666543
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=6.2e-14 Score=150.81 Aligned_cols=244 Identities=13% Similarity=0.120 Sum_probs=106.5
Q ss_pred CCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHh
Q 040297 211 SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 211 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
+...+|.++.+|+.+.+..+ ++ .++...|..+++|+.+++.++ ++.....+|.++++|+.+.+..+ +. .+....|
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF 136 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAF 136 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceee
Confidence 34445666666666666533 44 455555555666666666543 44344455666666665554433 22 3444444
Q ss_pred hcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcE
Q 040297 291 TGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370 (773)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 370 (773)
.++..++...... .......+|.++++|+.+.+..+. ......+|.++.+|+.
T Consensus 137 ~~~~~~~~~~~~~--------------------------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 137 KGCDFKEITIPEG--------------------------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKS 189 (394)
T ss_dssp TTCCCSEEECCTT--------------------------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--------------------------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceE
Confidence 3332222111111 111222334444444444443322 1122334444444444
Q ss_pred EEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc
Q 040297 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450 (773)
Q Consensus 371 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 450 (773)
+.+..+ +......+|.++..|+.+.+..+... .....+....|+.+.+... +..+....|.++..++.+.+..+...
T Consensus 190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~ 266 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR 266 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE
T ss_pred EEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce
Confidence 444433 22222334444555554444433211 1112222334444444321 22233344555566666665554332
Q ss_pred cccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEcc
Q 040297 451 GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493 (773)
Q Consensus 451 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 493 (773)
.....|..+..++.+....+.+. ...|..+.+|+.+.+.
T Consensus 267 -i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 267 -IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp -ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred -eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 33344555555555555444322 2234455555555544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=6.6e-16 Score=148.97 Aligned_cols=150 Identities=22% Similarity=0.308 Sum_probs=91.4
Q ss_pred hcCCCCeeEEeCCCCccccccch------hhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhh
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPN------WINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLV 506 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 506 (773)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445666666666666665554 66677777777777777764 44 6666677777777777665 3343222
Q ss_pred ccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChh
Q 040297 507 YTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 586 (773)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 586 (773)
. +++|+.|++++|++++ +| .
T Consensus 91 ~----------------------------------------------------------~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 91 V----------------------------------------------------------ADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp H----------------------------------------------------------HHHCSEEEEEEEECCC-HH-H
T ss_pred c----------------------------------------------------------CCcCCEEECcCCcCCc-CC-c
Confidence 1 2366666666666664 33 4
Q ss_pred hhccCCCCeEeCCCCcCCCCCc-cccccCccCCeeeCccccCcccCCcc----------cccCCCCCEEE
Q 040297 587 IGYLTRIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPSQ----------LTVLNTLAVFK 645 (773)
Q Consensus 587 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~L~ 645 (773)
++.+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.. +..+++|+.||
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666666666666666663322 35666666666666666666555542 55666666654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.4e-13 Score=129.83 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=50.0
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCcc--ccccCccCCeeeCccccCcccCCc----ccccCCCC
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT--TFSNLKQIESLDLSYNLLHGKIPS----QLTVLNTL 641 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~----~l~~l~~L 641 (773)
+|+.|++++|++++..+..++.+++|++|+|++|.++ .+|. .++.+++|+.|++++|+++ .+|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 5555555555555433344466666666666666665 3444 5666666667777776666 3344 36666777
Q ss_pred CEEEccCCccc
Q 040297 642 AVFKVAYNNLS 652 (773)
Q Consensus 642 ~~L~ls~N~l~ 652 (773)
+.||+++|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 77777766654
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.3e-14 Score=131.03 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=96.0
Q ss_pred hcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCc
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGE 512 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 512 (773)
+..+++|++|++++|+++. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 4567788888888888874 454333344888888888888764 56778888888888888887543333332
Q ss_pred cccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCCh--hhhcc
Q 040297 513 DYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT--QIGYL 590 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l 590 (773)
+++|+.|++++|+++ .+|. .++.+
T Consensus 87 -----------------------------------------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l 112 (176)
T 1a9n_A 87 -----------------------------------------------------LPDLTELILTNNSLV-ELGDLDPLASL 112 (176)
T ss_dssp -----------------------------------------------------CTTCCEEECCSCCCC-CGGGGGGGGGC
T ss_pred -----------------------------------------------------CCCCCEEECCCCcCC-cchhhHhhhcC
Confidence 347888888888886 4555 67788
Q ss_pred CCCCeEeCCCCcCCCCCcc----ccccCccCCeeeCccccCcc
Q 040297 591 TRIHALNLSHNNLTGTIPT----TFSNLKQIESLDLSYNLLHG 629 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~LdLs~N~l~~ 629 (773)
++|+.|++++|.++ .+|. .+..+++|+.||+++|....
T Consensus 113 ~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 113 KSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888888888887 4555 37788888888888887653
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.6e-15 Score=146.17 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=127.2
Q ss_pred hhcCCCCcEEEccCccccccCcc------cccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccc
Q 040297 457 INILPQLSSLLLGNNYIEGEIPV------QLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASV 530 (773)
Q Consensus 457 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (773)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45677888889999999888776 89999999999999999986 45 4433
Q ss_pred cCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccc
Q 040297 531 YGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTT 610 (773)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 610 (773)
+++|+.|++++|+++ .+|..+..+++|++|+|++|.+++ +| .
T Consensus 69 -----------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 69 -----------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp -----------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-H
T ss_pred -----------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-c
Confidence 458999999999999 788888888999999999999996 55 6
Q ss_pred cccCccCCeeeCccccCcccCC-cccccCCCCCEEEccCCcccccCCCC----------CcccccCCcCcccCCC
Q 040297 611 FSNLKQIESLDLSYNLLHGKIP-SQLTVLNTLAVFKVAYNNLSGKIPDR----------VAQFSTFEEDSYEGNP 674 (773)
Q Consensus 611 ~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~----------~~~~~~l~~~~l~~Np 674 (773)
+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..++.++.++ +||
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 8999999999999999986543 57899999999999999999887763 44556666543 554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=5.4e-13 Score=124.71 Aligned_cols=90 Identities=24% Similarity=0.238 Sum_probs=84.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
+.++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 47899999999999888999999999999999999999888888999999999999999999888888999999999999
Q ss_pred cCCcccccCC
Q 040297 647 AYNNLSGKIP 656 (773)
Q Consensus 647 s~N~l~~~~p 656 (773)
++|++....+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987654
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=3.2e-13 Score=142.78 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=98.9
Q ss_pred cEEecccC-cCcccCChhhhccCCCCeEeCCC-CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 570 SGIDLSCN-KLTGEIPTQIGYLTRIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 570 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
..++++++ +++ .+|. +..+++|++|+|++ |.|++..|..|+++++|+.|||++|+|++.+|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35789988 898 5888 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
+|+|++..|..+..+. |+.+++.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999988887766655 99999999999999964
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.4e-12 Score=122.20 Aligned_cols=90 Identities=23% Similarity=0.247 Sum_probs=82.8
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|+++++|+.|||++|++++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 48899999999999888999999999999999999999877777899999999999999999887777999999999999
Q ss_pred cCCcccccCC
Q 040297 647 AYNNLSGKIP 656 (773)
Q Consensus 647 s~N~l~~~~p 656 (773)
++|++....+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999986443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=4.1e-11 Score=128.70 Aligned_cols=316 Identities=10% Similarity=0.075 Sum_probs=184.8
Q ss_pred hhhcCCC-CCCEEECCCCCCccccchhHhhcCCCCCEEEccCCc---CccCCccCccCCCCcCEEEccCCcCccCCchhH
Q 040297 165 KFLYHQH-DLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNS---LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEI 240 (773)
Q Consensus 165 ~~l~~~~-~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 240 (773)
.+|.++. .|+.+.+... ++ .+....|.+|++|+.+.+..|. ++......|..+.+|+.+.+..+ ++ .++...
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred hhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence 3566664 5888888643 43 4555556788888888887653 44444566777788887777654 33 456666
Q ss_pred hhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCC
Q 040297 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNL 320 (773)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 320 (773)
+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++ .+....|. ...|+.+.+..+. .......|.++.++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcc-cccccchhhhcccc
Confidence 666778888888643 33355567788888888888655 44 66666665 4567777776543 22334556677777
Q ss_pred cEEEcccccCCcccccc-------------ccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcccccc
Q 040297 321 MRLQLDGNNFTGEISDS-------------LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387 (773)
Q Consensus 321 ~~L~L~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 387 (773)
+......+......... +.....+..+.+.. .+......+|.++..|+.+.+.++... ....+|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccc
Confidence 77766554433111101 11122233333322 222233446677777777777654432 4455677
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEE
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSL 466 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 466 (773)
++.+|+.+.+.. .+.......|. +.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++......|.++++|+.+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 777777777753 34444444454 567777777653 55555667777777777777544 444445667777777777
Q ss_pred EccCccccccCcccccCCCCCCEEEccCCcC
Q 040297 467 LLGNNYIEGEIPVQLCELKEVRLIDLSHNNL 497 (773)
Q Consensus 467 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 497 (773)
++.++.... ..+..+.+|+.+.+..+.+
T Consensus 363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHHH---HTCBCCCCC----------
T ss_pred EECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 777765431 3456666777776665543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=5.5e-11 Score=127.69 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=36.5
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+....+|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 4444444332 33233445666666666666543 543445566666777777666664321 234455556655555
Q ss_pred CCc
Q 040297 648 YNN 650 (773)
Q Consensus 648 ~N~ 650 (773)
.|.
T Consensus 387 ~~~ 389 (394)
T 4gt6_A 387 PGS 389 (394)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=3e-13 Score=143.25 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=28.4
Q ss_pred hccCCCCeEeCCCCcCCCC----CccccccCccCCeeeCccccCccc----CCcccccCCCCCEEEccCCccc
Q 040297 588 GYLTRIHALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHGK----IPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 588 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
...++|++|+|++|.|++. ++..+...++|+.|||++|.++.. ++..+...++|+.||+++|+++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3344444444444444321 123334444455555555544431 2223333445555555555544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=6.5e-13 Score=140.66 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=42.0
Q ss_pred CCCCEEEccCCcCccCCccCcc-----CCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhh-----
Q 040297 196 TNLETLLLANNSLFGSFRMPIH-----SYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF----- 265 (773)
Q Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~----- 265 (773)
+.|++|+|++|.++......+. ..++|++|+|++|.++......+...+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4556666666655432222211 124566666666655432222333334456666666666554333322
Q ss_pred hCCCCCcEEEeecccCC
Q 040297 266 ADMKMLERLDISYNQLT 282 (773)
Q Consensus 266 ~~l~~L~~L~Ls~n~l~ 282 (773)
...++|++|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLT 168 (372)
T ss_dssp STTCCCCEEECCSSCCH
T ss_pred hcCCccceeeCCCCCCC
Confidence 23455666666666554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=1.8e-11 Score=129.17 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred cccccEEeccc-CcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEE
Q 040297 566 LTSMSGIDLSC-NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVF 644 (773)
Q Consensus 566 l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 644 (773)
+++|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34899999996 999988888999999999999999999999999999999999999999999988887887776 9999
Q ss_pred EccCCcccccCC-CCCcccccCCcCcccCCCCCCCCC
Q 040297 645 KVAYNNLSGKIP-DRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 645 ~ls~N~l~~~~p-~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++++|++...-+ ..+..+.......+..+...|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 999999875322 111111222233445566777654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=6e-09 Score=111.20 Aligned_cols=289 Identities=11% Similarity=0.058 Sum_probs=123.4
Q ss_pred hcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG 246 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 246 (773)
+....+|+.+.+.. .++ .+++..|.+|.+|+.+++..+ ++.+....|..+ +|+.+.+..+ ++ .++...|... +
T Consensus 42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence 33444455555542 122 344444455556666655433 333334444444 4555544432 22 3444444422 5
Q ss_pred CcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCc------------Ccccc
Q 040297 247 LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH------------IFSKK 314 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~ 314 (773)
|+.+.+..+ +......+|.++ +|+.+.+..+ ++ .+....+..+..++...+..+..... ....+
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 555555443 222223334333 3444444332 22 33334444455555555443322111 11122
Q ss_pred cCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcE
Q 040297 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTI 394 (773)
Q Consensus 315 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 394 (773)
.....+..+.+.... .......+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 223333333333221 1122334444455555555432 22223334445555555555443 22233344445555555
Q ss_pred EEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCcccc
Q 040297 395 LDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIE 474 (773)
Q Consensus 395 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 474 (773)
+.+..+ +..+...+|.+|++|+.+++.++.++......|.++.+|+.+.+..+ ++
T Consensus 268 i~l~~~------------------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 268 LNFYAK------------------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp EEECCC------------------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred cccccc------------------------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 554332 22333344555555555555555444333444555555555555432 33
Q ss_pred ccCcccccCCCCCCEEEccC
Q 040297 475 GEIPVQLCELKEVRLIDLSH 494 (773)
Q Consensus 475 ~~~~~~~~~l~~L~~L~L~~ 494 (773)
.+...+|.++++|+.+.+..
T Consensus 323 ~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 323 TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECTTTTTTCTTCCCCCCCT
T ss_pred EEHHHHhhCCCCCCEEEECC
Confidence 33344555555555555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2.8e-08 Score=105.92 Aligned_cols=70 Identities=9% Similarity=0.110 Sum_probs=43.2
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
++|+.+++.++.++......|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-...|.+.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 35666666666665444566777777777777654 55455567777777777777554 443434445443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=1.5e-08 Score=106.20 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=80.4
Q ss_pred cccEEEccCCCCCC-C-------cChhhcCCCCCCEEECCCCCCc---------cccchhHhhcCCCCCEEEccCCcCcc
Q 040297 148 QLTSISLSGYIDGG-T-------FPKFLYHQHDLKNADLSHLNLS---------GNFPNWLVENNTNLETLLLANNSLFG 210 (773)
Q Consensus 148 ~L~~L~l~~~~~~~-~-------~~~~l~~~~~L~~L~L~~~~l~---------~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (773)
+++.|.+..+...+ . +..+...+++|+.|.+...... +.+. .++..+|+|+.|.|++|.-.
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-
Confidence 56677766554332 1 1233456678888887654321 1122 33467788888888776311
Q ss_pred CCccCccCCCCcCEEEccCCcCccCCchhHh-hCCCCCcEEEccC--CccCcc-----Cchhh--hCCCCCcEEEeeccc
Q 040297 211 SFRMPIHSYQKLAILDVSKNFFQGHIPVEIG-TYLPGLMDLNLSR--NAFNGS-----IPSSF--ADMKMLERLDISYNQ 280 (773)
Q Consensus 211 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~n~ 280 (773)
..+. + .+++|+.|++..+.+.......+. ..+|+|++|+|+. +...+. +...+ ..+++|++|++++|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1121 3 267788888887776533323333 1367888887753 221111 01112 235677777777766
Q ss_pred CCCccchhHhh--cCCCccEEEcccCcCC
Q 040297 281 LTGEIPERMAT--GCFLLEILALSNNNLQ 307 (773)
Q Consensus 281 l~~~~~~~~~~--~l~~L~~L~L~~n~l~ 307 (773)
+.+..+..++. .+++|++|+|+.|.+.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 65433333322 1334444444444443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=9.7e-09 Score=107.53 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=42.8
Q ss_pred CCceeEEECCCccccccchhhhc---CCCCeeEEeCCCCcccccc----chhhhcCCCCcEEEccCccccccCcccccC-
Q 040297 412 PAFIEQVHLSKNKIEGQLESIIH---DSPYLVTLDLSYNRFHGSI----PNWINILPQLSSLLLGNNYIEGEIPVQLCE- 483 (773)
Q Consensus 412 ~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 483 (773)
+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45566666655555433222222 3556777777776666532 223344566777777766665433332322
Q ss_pred CCCCCEEEccCCc
Q 040297 484 LKEVRLIDLSHNN 496 (773)
Q Consensus 484 l~~L~~L~L~~N~ 496 (773)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2445666554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=3.8e-07 Score=90.32 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccccEEecccCcCcc--cCChhhhccCCCCeEeCCCCcCCCCCccccccCc--cCCeeeCccccCcccCC
Q 040297 567 TSMSGIDLSCNKLTG--EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKIP 632 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~~p 632 (773)
+.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|++.+.+|
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 445555555555554 2334444555555555555555432 1222222 45555555555544333
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.1e-07 Score=89.78 Aligned_cols=44 Identities=18% Similarity=0.056 Sum_probs=26.1
Q ss_pred hhhhcCCCCcEEEccCc-ccccc----CcccccCCCCCCEEEccCCcCC
Q 040297 455 NWINILPQLSSLLLGNN-YIEGE----IPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 455 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34555667777777777 66532 2334455566666666666664
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1e-07 Score=89.88 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=45.4
Q ss_pred chhhhcCCCCeeEEeCCCC-ccccc----cchhhhcCCCCcEEEccCccccccC----cccccCCCCCCEEEccCCcCCC
Q 040297 429 LESIIHDSPYLVTLDLSYN-RFHGS----IPNWINILPQLSSLLLGNNYIEGEI----PVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 429 ~~~~~~~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
+...+...+.|++|+|++| .+.+. +...+...++|++|+|++|.+.... ...+...++|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455666777888888887 77643 2334455677888888888776432 2334445667777777776653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=1.2e-07 Score=93.94 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=65.0
Q ss_pred EecccCcCc---ccCChhhhccCCCCeEeCCCCcCCC--CCccccccCccCCeeeCccccCcccCCcccccCC--CCCEE
Q 040297 572 IDLSCNKLT---GEIPTQIGYLTRIHALNLSHNNLTG--TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLN--TLAVF 644 (773)
Q Consensus 572 L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~L 644 (773)
++++.|+.. +.++....++++|+.|+|++|+|++ .+|..++.+++|+.|||++|++++. +.+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677777543 2222223568899999999999997 4557788999999999999999976 3344455 89999
Q ss_pred EccCCcccccCCC
Q 040297 645 KVAYNNLSGKIPD 657 (773)
Q Consensus 645 ~ls~N~l~~~~p~ 657 (773)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.83 E-value=1.2e-05 Score=70.21 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=40.3
Q ss_pred eeeCccccCc-ccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 619 SLDLSYNLLH-GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 619 ~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
.+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+..++.+++.+|||.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 4566666654 23443322 2466677777777666666666677777788899999999975
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=7.5e-06 Score=74.93 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=68.2
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCc-CCCCCccccccC----ccCCeeeCcccc-CcccCCcccccCCCC
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNN-LTGTIPTTFSNL----KQIESLDLSYNL-LHGKIPSQLTVLNTL 641 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~LdLs~N~-l~~~~p~~l~~l~~L 641 (773)
.|++||++++.+++.--..+..+++|+.|+|++|. +++.--..++.+ ++|++|||++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 78999999999987767778899999999999995 775444455554 479999999985 776555667889999
Q ss_pred CEEEccCCc
Q 040297 642 AVFKVAYNN 650 (773)
Q Consensus 642 ~~L~ls~N~ 650 (773)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=2.3e-05 Score=71.68 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCc-CCCCcchhhcCC----CCCcEEEcccCc-CCCCccccccCCCCC
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSGRIPRWLGNL----SALEDIRMSNNN-LEGPIPIEFCQLDYL 392 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 392 (773)
.|++||++++.++...-..+..+++|+.|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333344555555555555553 443333333332 245666666553 443333344555666
Q ss_pred cEEEccCCC
Q 040297 393 TILDLSNNA 401 (773)
Q Consensus 393 ~~L~L~~n~ 401 (773)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666665553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00064 Score=63.36 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=38.2
Q ss_pred hhhcCCCCeeEEeCCCC-ccccc----cchhhhcCCCCcEEEccCccccccC----cccccCCCCCCEEEccCCcCCC
Q 040297 431 SIIHDSPYLVTLDLSYN-RFHGS----IPNWINILPQLSSLLLGNNYIEGEI----PVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
....+-+.|++|+|++| .|.+. +...+..-..|+.|+|++|++.... ...+..-+.|+.|+|++|.|..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 34445566777777764 55532 2334444566666666666665332 2233345566666666666653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0016 Score=56.72 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=42.4
Q ss_pred cEEecccCcCc-ccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 570 SGIDLSCNKLT-GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 570 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
..+|.+++.++ ..+|..+. ++|+.|+|++|+|+...++.|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888886 35665443 46888888888888766777888888888888888775
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.61 E-value=0.0011 Score=61.64 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=31.6
Q ss_pred cCCCCCCEEECCCC-CCccc----cchhHhhcCCCCCEEEccCCcCccCCcc----CccCCCCcCEEEccCCcCc
Q 040297 168 YHQHDLKNADLSHL-NLSGN----FPNWLVENNTNLETLLLANNSLFGSFRM----PIHSYQKLAILDVSKNFFQ 233 (773)
Q Consensus 168 ~~~~~L~~L~L~~~-~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~ 233 (773)
.+-+.|+.|+|+++ .+... +.+.+ ..-+.|++|+|++|.+.+.... .+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666654 54422 11222 3345666666666666432221 2223345555555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.08 E-value=23 Score=28.31 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=22.5
Q ss_pred cCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc
Q 040297 257 FNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303 (773)
Q Consensus 257 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 303 (773)
++.+...+|.+|.+|+.+.+..+ ++ .|....|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 33344445555555555555443 23 44444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.25 E-value=54 Score=26.11 Aligned_cols=13 Identities=0% Similarity=0.138 Sum_probs=5.0
Q ss_pred cccCCCCCCeeeC
Q 040297 337 SLSNCRLLAGLYL 349 (773)
Q Consensus 337 ~l~~l~~L~~L~L 349 (773)
+|.+|++|+.+.+
T Consensus 15 aF~~c~~L~~i~i 27 (100)
T 2lz0_A 15 LFAGNTVIREITV 27 (100)
T ss_dssp TTTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEc
Confidence 3333333433333
Done!