BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040300
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/611 (68%), Positives = 506/611 (82%), Gaps = 12/611 (1%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MSD+ +RIAIVS+D+CKPKKCRQECK+SCPVVKTGKLCIEVTP +KIAFISE LCIGCGI
Sbjct: 1 MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPF+AIQIINLP +L+ THRY N+FKLHRLP PRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLGRF++PP+WQEI+ YFRGSELQNYFT++LED++KAIIKPQYVD+IP+A+
Sbjct: 121 KILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAI 180
Query: 181 QG---NVGQVLD---QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234
+G VG++L +K D+K + L L V+ R++ LSGGELQRFAI + VQ
Sbjct: 181 KGPVQKVGELLKLRMEKSPEDVKRYIKI-LQLENVLKRDIEKLSGGELQRFAIGMSCVQE 239
Query: 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG 294
A++YMFDEPSSYLDVKQRL AAQ++RSLL P YVI VEHDLSVLDYLSDF+C +YG P
Sbjct: 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299
Query: 295 AYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT 354
YGVVTLP SVREGINIFL G +P ENLRFR E+L FR+A+ ++ + + A + YP+
Sbjct: 300 VYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRA-FSYPS 358
Query: 355 MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN 414
+ KTQG+F L V EGEF+DS+I+VM+GENGTGKTT I++LAG LKPD +D IP+ N
Sbjct: 359 LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD----IPKLN 414
Query: 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
VS KPQKI+PKF TVR L +KIR + +PQF +DV+KPL I+ ++DQEV +LSGGELQ
Sbjct: 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQ 474
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL 534
RVA+ L LG PADIYLIDEPSAYLDSEQRI+ +KVI+RFILH KKTAF+VEHDFIMATYL
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534
Query: 535 ADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQ 594
AD+VIV+EG PS + A AP+SLLTG N FL +L++TFRRDP +FRPRINKLDS D++Q
Sbjct: 535 ADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQ 594
Query: 595 KAAGSYYYLDD 605
K++G+Y++LD+
Sbjct: 595 KSSGNYFFLDN 605
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 289/601 (48%), Positives = 390/601 (64%), Gaps = 13/601 (2%)
Query: 4 RLTRIAIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICV 62
R RIA++ D+C P KC C++ CPV + G I + I E C GCGICV
Sbjct: 17 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICV 76
Query: 63 KKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKI 122
KCPF AI I+NLP+ LD+D HRYG N F L+RLP+ + G V+G+VG NG GK+TA+KI
Sbjct: 77 HKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKI 136
Query: 123 LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG 182
LAG+L PNL N+ W ++ FRG+ELQNYF R+ ++ ++KPQYVD +PKAV+G
Sbjct: 137 LAGQLIPNLCEDND--SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 194
Query: 183 NVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDE 242
V ++L + DE ++ +L+L V+DR + LSGGELQR AIA ++ A Y FDE
Sbjct: 195 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 254
Query: 243 PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP 302
PSSYLD++QRLK A+V+R L V+VVEHDL+VLDYLSD I +YG+PG YG+ + P
Sbjct: 255 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 314
Query: 303 FSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNF 362
R GIN FL G++ EN+RFR + F T ++E +YP +VK G+F
Sbjct: 315 KGTRNGINEFLQGYLKDENVRFRPYEIRF----TKLSERVDVERETLVEYPRLVKDYGSF 370
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI 422
KL+V GE ++I ++G NG GKTTF++MLAG+ +P + VE + V+YKPQ I
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW-DLTVAYKPQYI 426
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFV-SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
+++ TV LL KI S + F ++++KPL I L D+ V +LSGGELQRVA+
Sbjct: 427 KAEYEGTVYELL-SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 485
Query: 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541
L + ADIYL+DEPSAYLD EQR+ ++ I+ + +KTA VVEHD +M Y++DR+IV+
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
Query: 542 EGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYY 601
EG+P A P + GMN FL+ + ITFRRDP + RPR NK S KDR+QKA G YY
Sbjct: 546 EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYY 605
Query: 602 Y 602
Y
Sbjct: 606 Y 606
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 547 bits (1409), Expect = e-156, Method: Compositional matrix adjust.
Identities = 289/601 (48%), Positives = 390/601 (64%), Gaps = 13/601 (2%)
Query: 4 RLTRIAIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICV 62
R RIA++ D+C P KC C++ CPV + G I + I E C GCGICV
Sbjct: 3 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICV 62
Query: 63 KKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKI 122
KCPF AI I+NLP+ LD+D HRYG N F L+RLP+ + G V+G+VG NG GK+TA+KI
Sbjct: 63 HKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKI 122
Query: 123 LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG 182
LAG+L PNL N+ W ++ FRG+ELQNYF R+ ++ ++KPQYVD +PKAV+G
Sbjct: 123 LAGQLIPNLCEDND--SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 180
Query: 183 NVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDE 242
V ++L + DE ++ +L+L V+DR + LSGGELQR AIA ++ A Y FDE
Sbjct: 181 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 240
Query: 243 PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP 302
PSSYLD++QRLK A+V+R L V+VVEHDL+VLDYLSD I +YG+PG YG+ + P
Sbjct: 241 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 300
Query: 303 FSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNF 362
R GIN FL G++ EN+RFR + F T ++E +YP +VK G+F
Sbjct: 301 KGTRNGINEFLQGYLKDENVRFRPYEIRF----TKLSERVDVERETLVEYPRLVKDYGSF 356
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI 422
KL+V GE ++I ++G NG GKTTF++MLAG+ +P + VE + V+YKPQ I
Sbjct: 357 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW-DLTVAYKPQYI 412
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFV-SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
+++ TV LL KI S + F ++++KPL I L D+ V +LSGGELQRVA+
Sbjct: 413 KAEYEGTVYELL-SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
Query: 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541
L + ADIYL+DEPSAYLD EQR+ ++ I+ + +KTA VVEHD +M Y++DR+IV+
Sbjct: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
Query: 542 EGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYY 601
EG+P A P + GMN FL+ + ITFRRDP + RPR NK S KDR+QKA G YY
Sbjct: 532 EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYY 591
Query: 602 Y 602
Y
Sbjct: 592 Y 592
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/528 (47%), Positives = 338/528 (64%), Gaps = 12/528 (2%)
Query: 77 KDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN 136
+ L++D HRYG N F L+RLPV + G V+G+VG NG GKSTA+KILAG+L PNL N+
Sbjct: 21 EQLEEDCVHRYGVNAFVLYRLPVVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND 80
Query: 137 PPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDM 196
W ++ FRG+ELQNYF ++ ++ ++KPQYVD IPKAV+G V ++L + DE
Sbjct: 81 --SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK 138
Query: 197 KADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256
++ L+L V++R + LSGGELQR AIA ++NA Y FDEPSSYLD++QRL AA
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316
+ +R L V+VVEHDL+VLDYLSD I +YG+PG YG+ + P R GIN FL G+
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGY 258
Query: 317 VPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQI 376
+ EN+RFR + F T EIE YP +VK G+F+L+V GE ++
Sbjct: 259 LKDENVRFRPYEIKF----TKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEV 314
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436
I ++G NG GKTTF++ LAG+ +P + +E + V+YKPQ I ++ TV LL
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPT---EGKIEW-DLTVAYKPQYIKADYEGTVYELL-S 369
Query: 437 KIRDSYTHPQFV-SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495
KI S + F ++++KPL I L D+EV LSGGELQRVA+ L + ADIYL+DEPS
Sbjct: 370 KIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429
Query: 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQ 555
AYLD EQR+ ++ I+ +KTA VVEHD + Y++DR+ V+EG+P A P
Sbjct: 430 AYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKYGRALPPX 489
Query: 556 SLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603
G N FL+ + ITFRRDP RPR NK S KDR+QK G YYY+
Sbjct: 490 GXREGXNRFLASIGITFRRDPDTGRPRANKEGSVKDREQKEKGEYYYI 537
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/527 (41%), Positives = 335/527 (63%), Gaps = 8/527 (1%)
Query: 79 LDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
++ + HRY N FKL LP P+ +LG++G NG+GK+T LKILAG++ PN G N+
Sbjct: 1 MEGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA 198
E+L FRG E+ NYF + + LK + K QYV++ K ++G V ++L + DER K
Sbjct: 61 GKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKD 120
Query: 199 DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258
++ L++ + +++ LSGG LQR +A ++ A++Y+FD+PSSYLDV++R+ A+
Sbjct: 121 EVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 259 VRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVP 318
+R LL+ N YVIVV+HDL VLDYL+D I +YG+ YG V+ ++ R GIN FL G++P
Sbjct: 181 IRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLP 239
Query: 319 TENLRFRDESLTFRVAETPQ-ESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQII 377
EN++ R + + F + E + +++++T + K+ ++K G+F+L V GE + +II
Sbjct: 240 AENMKIRPDEIKFMLKEVSDLDLSKDLKT--KMKWTKIIKKLGDFQLVVDNGEAKEGEII 297
Query: 378 VMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437
+LG NG GKTTF R+L G + D + V + +SYKPQ+I P + TV+ L
Sbjct: 298 GILGPNGIGKTTFARILVGEITAD---EGSVTPEKQILSYKPQRIFPNYDGTVQQYLENA 354
Query: 438 IRDSY-THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496
+D+ T F +V K L + +L++ V +LSGGELQ++ + L K AD+Y++D+PS+
Sbjct: 355 SKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSS 414
Query: 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556
YLD E+R + AK IKR K F+++HD + Y+ADR+IV++G+P +A +P +
Sbjct: 415 YLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVT 474
Query: 557 LLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603
L TGMN FL L++TFRRD RPR+NK+ S DR QK G YY +
Sbjct: 475 LKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSM 521
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 27/235 (11%)
Query: 363 KLKVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
K+K V+G E D + + +LG +G GKTT + MLAG+ KP S E ++ ++ K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 420 QKISPKFQSTVRHLLHQKIRDSYTHP------------QFVSDVMKPLLIEQLMDQEVVN 467
+++ FQ+ + H + ++ P + V ++ + LLI+ L+D++
Sbjct: 75 REVGMVFQNYALYP-HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ 133
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LSGG+ QRVAL L K + L DEP + LD+ R++ IK T+ V HD
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 528 FIMATYLADRVIVYE-------GQPSVDCVANAPQSLLTGMNLFLSHLDITFRRD 575
A +A R+ V+ G P D V ++P+++ F+ + F RD
Sbjct: 194 QAEAMTMASRIAVFNQGKLVQYGTP--DEVYDSPKNMFVAS--FIGNPPTNFLRD 244
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN------PPDWQEILTYFRGSELQN 154
G+ + L+G +G GK+T L +LAG KP G F++ PP ++E+ F+ L
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP 88
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA-DLCTDLDLNQVIDRN 213
+ T + +N+ ++ + + KDE + + ++ L ++ ++DR
Sbjct: 89 HMT--VFENIAFPLRARRI----------------SKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-V 272
LSGG+ QR A+A V+ ++ +FDEP S LD R+ ++ L + V V
Sbjct: 131 PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYV 190
Query: 273 EHDLSVLDYLSDFICCL-YGKPGAYGVVTLPFSVREG-INIFLAGFV---PTENLR 323
HD + ++ I GK YG P V + N+F+A F+ PT LR
Sbjct: 191 THDQAEAMTMASRIAVFNQGKLVQYGT---PDEVYDSPKNMFVASFIGNPPTNFLR 243
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 29/217 (13%)
Query: 343 EIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS 402
EIE+ +R K+ + N LKV GE+ V+LG G GKT F+ ++AG PDS
Sbjct: 3 EIESLSR-KWKNF--SLDNLSLKVESGEY-----FVILGPTGAGKTLFLELIAGFHVPDS 54
Query: 403 -------VEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLH-----QKIRDSYTHPQFVSD 450
+ +D+ + ++++ Q S V+ L +KI+D P+ V D
Sbjct: 55 GRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD----PKRVLD 110
Query: 451 VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510
+ L IE L+D+ + LSGGE QRVAL L I L+DEP + LD + A +++
Sbjct: 111 TARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 511 KRFILHAKK--TAFVVEHDFIMATYLADRV-IVYEGQ 544
+LH K T + HD A +ADR+ +V +G+
Sbjct: 171 S--VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 36/207 (17%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQN 154
G+ ++G G GK+ L+++AG P+ GR + P+ +I ++ L
Sbjct: 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ ++ NL+ ++ + + PK V D DL + ++DRN
Sbjct: 86 HMN--VKKNLEFGMRMKKIKD-PKRV-----------------LDTARDLKIEHLLDRNP 125
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-VE 273
LSGGE QR A+A V N +I + DEP S LD + + A +++ L + N ++ +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 274 HDLSVLDYLSDFICCLY-------GKP 293
HD + ++D I + GKP
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKP 212
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 343 EIETYARYKYPTMVKTQGNF------KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAG 396
E+ K + K GNF L + +GEF +V+LG +G GKTT +RM+AG
Sbjct: 6 EVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEF-----LVLLGPSGCGKTTTLRMIAG 60
Query: 397 LLKPDSVEDSDVEIPEFNVSYKPQK---ISPKFQSTVRHLLHQKIRDSYTHP----QFVS 449
L +P + + + +V+Y P K IS FQS H + ++ P +F
Sbjct: 61 LEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAV-WPHMTVYENIAFPLKIKKFPK 116
Query: 450 D--------VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501
D + L IE+L+++ LSGG+ QRVA+ + D+ L+DEP + LD++
Sbjct: 117 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
Query: 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
R+ IK+ K T V HD + A + DR+ V
Sbjct: 177 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 215
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 30/231 (12%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLK 128
I++I + + ++ T R+G N +++L + + G+ L L+G +G GK+T L+++AG +
Sbjct: 5 IEVIKMVEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 63
Query: 129 PNLGR--FNN------PPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
P GR F + PP + I F+ + + T + E+ I P + PK
Sbjct: 64 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT-VYEN----IAFPLKIKKFPK-- 116
Query: 181 QGNVGQVLDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239
DE D + +L + ++++R LSGG+ QR A+A V ++ +
Sbjct: 117 -----------DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 165
Query: 240 FDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289
DEP S LD K R+ ++ L + I V HD + D I +
Sbjct: 166 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 216
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 343 EIETYARYKYPTMVKTQGNF------KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAG 396
E+ K + K GNF L + +GEF +V+LG +G GKTT +RM+AG
Sbjct: 5 EVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEF-----LVLLGPSGCGKTTTLRMIAG 59
Query: 397 LLKPDSVEDSDVEIPEFNVSYKPQK---ISPKFQSTVRHLLHQKIRDSYTHP----QFVS 449
L +P + + + +V+Y P K IS FQS H + ++ P +F
Sbjct: 60 LEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAV-WPHMTVYENIAFPLKIKKFPK 115
Query: 450 D--------VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501
D + L IE+L+++ LSGG+ QRVA+ + D+ L+DEP + LD++
Sbjct: 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
R+ IK+ K T V HD + A + DR+ V
Sbjct: 176 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 214
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 30/231 (12%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLK 128
I++I + + ++ T R+G N +++L + + G+ L L+G +G GK+T L+++AG +
Sbjct: 4 IEVIKMVEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62
Query: 129 PNLGR--FNN------PPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
P GR F + PP + I F+ + + T + E+ I P + PK
Sbjct: 63 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT-VYEN----IAFPLKIKKFPK-- 115
Query: 181 QGNVGQVLDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239
DE D + +L + ++++R LSGG+ QR A+A V ++ +
Sbjct: 116 -----------DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 164
Query: 240 FDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289
DEP S LD K R+ ++ L + I V HD + D I +
Sbjct: 165 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 215
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 19/189 (10%)
Query: 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQK--IS 423
E D + +++LG +G GKTT +RM+AGL +P + D V PE + P+ I+
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 424 PKFQSTVRHLLHQKIRDSYTHP------------QFVSDVMKPLLIEQLMDQEVVNLSGG 471
FQS + H + D+ P Q V +V + L + +L++++ LSGG
Sbjct: 85 MVFQSYALYP-HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGG 143
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531
+ QRVAL + + ++L+DEP + LD++ R+ +K+ T V HD + A
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203
Query: 532 TYLADRVIV 540
+ DR+ V
Sbjct: 204 MTMGDRIAV 212
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 35/244 (14%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN--------------NPPDWQEILTYFR 148
G+ + L+G +G GK+T L+++AG +P+ G+ PP ++I F+
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 149 GSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
L + T + DN I P + +P+ Q +DQ+ ++ L L +
Sbjct: 89 SYALYPHMT--VYDN---IAFPLKLRKVPR-------QEIDQRVR-----EVAELLGLTE 131
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NS 267
+++R +LSGG+ QR A+ V+ ++++ DEP S LD K R++ ++ L R
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191
Query: 268 YVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREG-INIFLAGFVPTENLRFRD 326
I V HD + D I + G V P V + N F+AGF+ + + F D
Sbjct: 192 TTIYVTHDQVEAMTMGDRIAVM--NRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFLD 249
Query: 327 ESLT 330
+T
Sbjct: 250 AIVT 253
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 27/215 (12%)
Query: 344 IETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS- 402
I + R+ T VK + L++ +GEF +V+LG +G GKTT +R +AGL +P
Sbjct: 10 INIWKRFGDVTAVK---DLSLEIKDGEF-----LVLLGPSGCGKTTTLRXIAGLEEPTRG 61
Query: 403 ---VEDSDVEIPEFNVSYKPQK--ISPKFQSTVRHLLHQKIRDSYTHP------------ 445
+ED+ V PE V P++ ++ FQS + H + D+ P
Sbjct: 62 QIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYP-HXTVYDNIAFPLKLRKVPKQEID 120
Query: 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505
+ V +V + L + +L++++ LSGG+ QRVAL + + ++L DEP + LD++ R+
Sbjct: 121 KRVREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVK 180
Query: 506 AAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
+K+ T V HD + A DR+ V
Sbjct: 181 XRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAV 215
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 144/333 (43%), Gaps = 70/333 (21%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---NN-----------PPDWQEILTY 146
+ G+ L L+G +G GK+T L+ +AG +P G+ +N PP +++
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDL 206
F+ L + T + DN I P + +PK Q +D++ ++ L L
Sbjct: 90 FQSYALYPHXT--VYDN---IAFPLKLRKVPK-------QEIDKR-----VREVAEXLGL 132
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP- 265
++++R +LSGG+ QR A+ ++ ++++ DEP S LD K R+K ++ L R
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL 192
Query: 266 NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSV-REGINIFLAGFVPTENLRF 324
I V HD D I G V P V + +N F+AGF+ + F
Sbjct: 193 GVTTIYVTHDQVEAXTXGDRIAVX--NKGELQQVGTPDEVYYKPVNTFVAGFIGSPPXNF 250
Query: 325 RDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENG 384
D ++T + + + G FKLK+++ +F V+ EN
Sbjct: 251 LDATIT-------------DDGFLDF---------GEFKLKLLQDQFE-----VLEEENX 283
Query: 385 TGKTTFIRMLAGLLKPDSVEDSD---VEIPEFN 414
GK ++P+ V D+ +++PE N
Sbjct: 284 VGKEVIFG-----IRPEDVHDASFTHIDVPEEN 311
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 35/218 (16%)
Query: 351 KYPTMVKTQGNF------KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS-- 402
K +VK GNF LK+ +GEF + +LG +G+GK+T + +AG+ KP S
Sbjct: 5 KLENIVKKFGNFTALNNINLKIKDGEF-----MALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 403 --VEDSDV-EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHP------------QF 447
++ DV E+P K + + FQ+ + H + + P +
Sbjct: 60 IYFDEKDVTELPP-----KDRNVGLVFQNWALYP-HMTVYKNIAFPLELRKAPREEIDKK 113
Query: 448 VSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507
V +V K L I++L+++ LSGG+ QRVA+ L K ++ L+DEP + LD+ R+
Sbjct: 114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173
Query: 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRV-IVYEGQ 544
+KR T V HD A +ADR+ ++ EG+
Sbjct: 174 AELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGE 211
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 28/199 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN------PPDWQEILTYFRGSEL 152
+ G+ + L+G +G GKST L +AG KP G+ F+ PP + + F+ L
Sbjct: 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWAL 86
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA-DLCTDLDLNQVID 211
+ T K I P + P+ +E D K ++ L ++++++
Sbjct: 87 YPHMTV-----YKNIAFPLELRKAPR-------------EEIDKKVREVAKMLHIDKLLN 128
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
R LSGG+ QR AIA V+ E+ + DEP S LD RL+ ++ L + V
Sbjct: 129 RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 272 -VEHDLSVLDYLSDFICCL 289
V HD + ++D I +
Sbjct: 189 YVTHDQAEALAMADRIAVI 207
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP- 419
+ L + EGEF +V +G +G GK+T +RM+AGL +++ D+ I E ++ P
Sbjct: 21 DINLDIHEGEF-----VVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 420 --QKISPKFQSTVRHLLHQKIRDSYTHP------------QFVSDVMKPLLIEQLMDQEV 465
+ + FQS + H + ++ + Q V+ V + L + L+D++
Sbjct: 73 AERGVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
LSGG+ QRVA+ L ++L+DEP + LD+ R+ I R +T V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 526 HDFIMATYLADRVIVYEG 543
HD + A LAD+++V +
Sbjct: 192 HDQVEAMTLADKIVVLDA 209
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 29/232 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNN-PPDWQEILTYFRGSELQN 154
G+ + VG +G GKST L+++AG G R N+ PP + + F+ L
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ + + +N+ +K + G +V++Q+ + + L L ++DR
Sbjct: 89 HLS--VAENMSFGLK----------LAGAKKEVINQRVNQ-----VAEVLQLAHLLDRKP 131
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQVVRSLLRPNSYVIVVE 273
LSGG+ QR AI V +++ DEP S LD R++ ++ R R +I V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 274 HDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVRE-GINIFLAGFVPTENLRF 324
HD L+D I L G V P + + F+AGF+ + + F
Sbjct: 192 HDQVEAMTLADKIVVL--DAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 241
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP- 419
+ L + EGEF +V +G +G GK+T +RM+AGL +++ D+ I E ++ P
Sbjct: 21 DINLDIHEGEF-----VVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 420 --QKISPKFQSTVRHLLHQKIRDSYTHP------------QFVSDVMKPLLIEQLMDQEV 465
+ + FQS + H + ++ + Q V+ V + L + L+D++
Sbjct: 73 AERGVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
LSGG+ QRVA+ L ++L+DEP + LD+ R+ I R +T V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 526 HDFIMATYLADRVIVYEG 543
HD + A LAD+++V +
Sbjct: 192 HDQVEAMTLADKIVVLDA 209
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 29/232 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNN-PPDWQEILTYFRGSELQN 154
G+ + VG +G GKST L+++AG G R N+ PP + + F+ L
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ + + +N+ +K + G +V++Q+ + + L L ++DR
Sbjct: 89 HLS--VAENMSFGLK----------LAGAKKEVINQRVNQ-----VAEVLQLAHLLDRKP 131
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQVVRSLLRPNSYVIVVE 273
LSGG+ QR AI V +++ DEP S LD R++ ++ R R +I V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 274 HDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVRE-GINIFLAGFVPTENLRF 324
HD L+D I L G V P + + F+AGF+ + + F
Sbjct: 192 HDQVEAMTLADKIVVL--DAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 241
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP- 419
+ L + EGEF +V +G +G GK+T +RM+AGL +++ D+ I E ++ P
Sbjct: 21 DINLDIHEGEF-----VVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 420 --QKISPKFQSTVRHLLHQKIRDSYTHP------------QFVSDVMKPLLIEQLMDQEV 465
+ + FQS + H + ++ + Q V+ V + L + L+D++
Sbjct: 73 AERGVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
LSGG+ QRVA+ L ++L+D+P + LD+ R+ I R +T V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 526 HDFIMATYLADRVIVYEG 543
HD + A LAD+++V +
Sbjct: 192 HDQVEAMTLADKIVVLDA 209
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 29/232 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNN-PPDWQEILTYFRGSELQN 154
G+ + VG +G GKST L+++AG G R N+ PP + + F+ L
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ + + +N+ +K + G +V++Q+ + + L L ++DR
Sbjct: 89 HLS--VAENMSFGLK----------LAGAKKEVINQRVNQ-----VAEVLQLAHLLDRKP 131
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQVVRSLLRPNSYVIVVE 273
LSGG+ QR AI V +++ D+P S LD R++ ++ R R +I V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 274 HDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVRE-GINIFLAGFVPTENLRF 324
HD L+D I L G V P + + F+AGF+ + + F
Sbjct: 192 HDQVEAMTLADKIVVL--DAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 241
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 23/207 (11%)
Query: 352 YPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP 411
YP ++ ++ EGE ++ +LG +G+GKTT +R++AGL +P DV I
Sbjct: 24 YPGGARSVRGVSFQIREGE-----MVGLLGPSGSGKTTILRLIAGLERPTK---GDVWIG 75
Query: 412 EFNVS-YKPQK--ISPKFQ--STVRHL---------LHQKIRDSYTHPQFVSDVMKPLLI 457
V+ PQK + FQ + +H+ L +K V ++++ + +
Sbjct: 76 GKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL 135
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
E ++ LSGG+ QRVAL L + L DEP A +D++ R +++
Sbjct: 136 ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195
Query: 518 KKTAFVVEHDFIMATYLADRVIV-YEG 543
T+ V HD A +ADRV+V +EG
Sbjct: 196 GVTSVFVTHDQEEALEVADRVLVLHEG 222
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNN-PPDWQEILTYFRGSEL 152
R G+++GL+G +G GK+T L+++AG +P G R + PP + + F+ L
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYAL 98
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA-DLCTDLDLNQVID 211
+ T + DN+ ++ + V KDE D + +L + L +
Sbjct: 99 FQHMT--VYDNVSFGLREKRVP----------------KDEMDARVRELLRFMRLESYAN 140
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV-I 270
R +LSGG+ QR A+A ++ +FDEP + +D + R + VR + +
Sbjct: 141 RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200
Query: 271 VVEHDLSVLDYLSDFICCLY-GKPGAYGVVTLPFSVREGIN-IFLAGFVPTENLRFR 325
V HD ++D + L+ G +G P V E +F+A F+ N+ R
Sbjct: 201 FVTHDQEEALEVADRVLVLHEGNVEQFGT---PEEVYEKPGTLFVASFIGESNVWTR 254
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 18/177 (10%)
Query: 379 MLGENGTGKTTFIRMLAGLLKPDSVE----------DSDVEIP----EFNVSYKPQKISP 424
+LG +G GKTTF+R++AGL P + E + + +P + + ++ + P
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95
Query: 425 K---FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
F++ L + K+ + V +V K L I +++ LSGG+ QRVAL
Sbjct: 96 NLTAFENIAFPLTNMKMSKEEIRKR-VEEVAKILDIHHVLNHFPRELSGGQQQRVALARA 154
Query: 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538
L K + L+DEP + LD+ R A ++K T VV HD +ADRV
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 103 GQVLGLVGTNGIGKSTALKILAG-------------KLKPNLGRFNNPPDWQEILTYFRG 149
G+ G++G +G GK+T ++I+AG +L + G+ PP+ ++I F+
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ- 89
Query: 150 SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
T L NL A ++I + + +++ R ++ LD++ V
Sbjct: 90 -------TWALYPNLTAF------ENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSY 268
++ +LSGG+ QR A+A V++ + + DEP S LD + R A +V+ + R
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 269 VIVVEHDLSVLDYLSDFICCL 289
++VV HD + + ++D + L
Sbjct: 194 LLVVSHDPADIFAIADRVGVL 214
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 15/195 (7%)
Query: 357 KTQGNFKLKVVEGEFTDSQ-IIVMLGENGTGKTTFIRMLAGLLKPDSVE----DSDVE-I 410
K GNF+L V +F + V+LG G GK+ F+ ++AG++KPD E +D+ +
Sbjct: 9 KRLGNFRLNV---DFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 411 P--EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD--VMKPLLIEQLMDQEVV 466
P + + PQ + +V + +R+ + + + L I L+D++
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV-VE 525
LSGGE QRVAL L + L+DEP + +D + + V + + RF+ + V
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVT 184
Query: 526 HDFIMATYLADRVIV 540
HD I A LAD V V
Sbjct: 185 HDLIEAAMLADEVAV 199
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 38/228 (16%)
Query: 108 LVGTNGIGKSTALKILAGKLKPNLG--RFNN------PPDWQEILTYFRGSELQNYFTRI 159
L+G G GKS L+++AG +KP+ G R N PP+ + I G Q+Y
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI-----GFVPQDY---- 79
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD---LCTDLDLNQVIDRNVGD 216
H+ +V N+ L + + + L + ++DR
Sbjct: 80 -----------ALFPHL--SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-VEHD 275
LSGGE QR A+A V + + DEP S +D+K + + +R + R I+ V HD
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 276 LSVLDYLSDFICC-LYGKPGAYGVVTLPFSVREGINIFLAGFVPTENL 322
L L+D + L G+ G + FS + G +A F+ NL
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG---EVAEFLSARNL 231
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV-----EDSDVEIP 411
+ G++ LK V EF +I V++G+NG+GKTT +++LAGLL +D +
Sbjct: 20 RYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLL 79
Query: 412 EFNVSY-----KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV 466
NV Y Q I + V L D + + V++ + + L + +
Sbjct: 80 RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPL 139
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI-------KRFILHAKK 519
NLSGG+ QR+A+ L + +DEP + LD + +V+ K IL +
Sbjct: 140 NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
Query: 520 TAFVVEHDFIM 530
++ + DFI+
Sbjct: 200 LEYLDDMDFIL 210
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G++ +VG NG GK+T LKILAG L EI + GS + R
Sbjct: 37 GKIYVVVGKNGSGKTTLLKILAGLLAAA----------GEI--FLDGSPADPFLLR---K 81
Query: 163 NLKAIIKPQYVDHIPKAVQGNVGQVLD--QKDERDMKADLCTDLDLNQVIDRNVGD---L 217
N+ + + I V+ +V L+ DE +M+ + L+L + D L
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNL 141
Query: 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS 277
SGG+ QR AIA + ++ DEP S LD + + QV+ SL +I+V H+L
Sbjct: 142 SGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELE 201
Query: 278 VLDYLSDFI 286
LD + DFI
Sbjct: 202 YLDDM-DFI 209
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 379 MLGENGTGKTTFIRMLAGLLKPDSVE----------DSDVEIP----EFNVSYKPQKISP 424
+LG +G GKTTF+R++AGL P + E + + +P + + ++ + P
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95
Query: 425 K---FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
F++ L + K+ + V +V K L I +++ LSG + QRVAL
Sbjct: 96 NLTAFENIAFPLTNMKMSKEEIRKR-VEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154
Query: 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538
L K + L+DEP + LD+ R A ++K T VV HD +ADRV
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 31/201 (15%)
Query: 103 GQVLGLVGTNGIGKSTALKILAG-------------KLKPNLGRFNNPPDWQEILTYFRG 149
G+ G++G +G GK+T ++I+AG +L + G+ PP+ ++I F+
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ- 89
Query: 150 SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
T L NL A ++I + + +++ R ++ LD++ V
Sbjct: 90 -------TWALYPNLTAF------ENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSY 268
++ +LSG + QR A+A V++ + + DEP S LD + R A +V+ + R
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 269 VIVVEHDLSVLDYLSDFICCL 289
++VV HD + + ++D + L
Sbjct: 194 LLVVSHDPADIFAIADRVGVL 214
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--------VEDSDVEIPEFN 414
+L + GE +I+ ++G NG GK+T + +AG+ +E +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
+Y Q+ +P F + V H L D T + ++DV L ++ + + LSGGE Q
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 133
Query: 475 RVALCLCL------GKPA-DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV-EH 526
RV L + PA + L+D+P LD Q+ K++ L + A V+ H
Sbjct: 134 RVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILS--ALSQQGLAIVMSSH 191
Query: 527 DFIMATYLADRVIVYEG 543
D A R + +G
Sbjct: 192 DLNHTLRHAHRAWLLKG 208
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
R G++L LVG NG GKST L +AG + G F G L+ + L
Sbjct: 24 RAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ-----------FAGQPLEAWSATKL 71
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
+ +A + Q V + K ++ D+ L L+ + R+ LSGG
Sbjct: 72 ALH-RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG 130
Query: 221 ELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
E QR +A V +Q ++ + D+P LDV Q+ +++ +L + +++
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSS 190
Query: 274 HDLS 277
HDL+
Sbjct: 191 HDLN 194
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--------VEDSDVEIPEFN 414
+L + GE +I+ ++G NG GK+T + +AG+ +E +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
+Y Q+ +P F + V H L D T + ++DV L ++ + + LSGGE Q
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 133
Query: 475 RVALCLCL------GKPA-DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV-EH 526
RV L + PA + L+D+P LD Q+ K++ L + A V+ H
Sbjct: 134 RVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILS--ALSQQGLAIVMSSH 191
Query: 527 DFIMATYLADRVIVYEG 543
D A R + +G
Sbjct: 192 DLNHTLRHAHRAWLLKG 208
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
R G++L LVG NG GKST L +AG + G F G L+ + L
Sbjct: 24 RAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ-----------FAGQPLEAWSATKL 71
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
+ +A + Q V + K ++ D+ L L+ + R+ LSGG
Sbjct: 72 ALH-RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG 130
Query: 221 ELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
E QR +A V +Q ++ + D+P + LDV Q+ +++ +L + +++
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190
Query: 274 HDLS 277
HDL+
Sbjct: 191 HDLN 194
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 23/199 (11%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--------VEDSDVEIPEFN 414
+L + GE +I+ ++G NG GK+T + AG +E +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 415 VSYKPQKISPKFQSTVRH--LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGE 472
+Y Q+ +P F + V H LHQ + T + ++DV L ++ + + LSGGE
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGALALDDKLGRSTNQLSGGE 131
Query: 473 LQRVALCLCL------GKPA-DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV- 524
QRV L + PA + L+DEP LD Q+ K++ L + A V
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS--ALSQQGLAIVXS 189
Query: 525 EHDFIMATYLADRVIVYEG 543
HD A R + +G
Sbjct: 190 SHDLNHTLRHAHRAWLLKG 208
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
R G++L LVG NG GKST L AG G+ + F G L+ + L
Sbjct: 24 RAGEILHLVGPNGAGKSTLLARXAGXTS---GKGS---------IQFAGQPLEAWSATKL 71
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
+ +A + Q V + K ++ D+ L L+ + R+ LSGG
Sbjct: 72 ALH-RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG 130
Query: 221 ELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
E QR +A V +Q ++ + DEP + LDV Q+ +++ +L + ++
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSS 190
Query: 274 HDLS 277
HDL+
Sbjct: 191 HDLN 194
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ----NYF 156
+ G+V+G+VG +G GKST K++ RF P + Q ++ G +L N+
Sbjct: 29 KQGEVIGIVGRSGSGKSTLTKLIQ--------RFYIPENGQVLID---GHDLALADPNWL 77
Query: 157 TR----ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DLNQVI 210
R +L+DN+ ++ +D+I A G + + + D ++L N ++
Sbjct: 78 RRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 135
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
LSGG+ QR AIA V N +I +FDE +S LD + + + + + + VI
Sbjct: 136 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT-VI 194
Query: 271 VVEHDLSVLDYLSDFICCLYGK 292
++ H LS + I GK
Sbjct: 195 IIAHRLSTVKNADRIIVMEKGK 216
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE +I ++G +G+GK+T +++ P++ ++ D+ + + N
Sbjct: 23 NINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN-- 75
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ +++ Q V LL++ I D S +P F+S++ +
Sbjct: 76 WLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY-- 131
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++ ++ LSGG+ QR+A+ L I + DE ++ LD E V + + +
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K 189
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
+T ++ H ADR+IV E
Sbjct: 190 GRTVIIIAHRLSTVKN-ADRIIVME 213
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ----NYF 156
+ G+V+G+VG +G GKST K++ RF P + Q ++ G +L N+
Sbjct: 27 KQGEVIGIVGRSGSGKSTLTKLIQ--------RFYIPENGQVLID---GHDLALADPNWL 75
Query: 157 TR----ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DLNQVI 210
R +L+DN+ ++ +D+I A G + + + D ++L N ++
Sbjct: 76 RRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
LSGG+ QR AIA V N +I +FDE +S LD + + + + + + VI
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT-VI 192
Query: 271 VVEHDLSVLDYLSDFICCLYGK 292
++ H LS + I GK
Sbjct: 193 IIAHRLSTVKNADRIIVMEKGK 214
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE +I ++G +G+GK+T +++ P++ ++ D+ + + N
Sbjct: 21 NINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN-- 73
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ +++ Q V LL++ I D S +P F+S++ +
Sbjct: 74 WLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY-- 129
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++ ++ LSGG+ QR+A+ L I + DE ++ LD E V + + +
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K 187
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
+T ++ H ADR+IV E
Sbjct: 188 GRTVIIIAHRLSTVKN-ADRIIVME 211
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ----NYF 156
+ G+V+G+VG +G GKST K++ RF P + Q ++ G +L N+
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLIQ--------RFYIPENGQVLID---GHDLALADPNWL 81
Query: 157 TR----ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DLNQVI 210
R +L+DN+ ++ +D+I A G + + + D ++L N ++
Sbjct: 82 RRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
LSGG+ QR AIA V N +I +FDE +S LD + + + + + + VI
Sbjct: 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT-VI 198
Query: 271 VVEHDLSVLDYLSDFICCLYGK 292
++ H LS + I GK
Sbjct: 199 IIAHRLSTVKNADRIIVMEKGK 220
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE +I ++G +G+GK+T +++ P++ ++ D+ + + N
Sbjct: 27 NINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN-- 79
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ +++ Q V LL++ I D S +P F+S++ +
Sbjct: 80 WLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY-- 135
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++ ++ LSGG+ QR+A+ L I + DE ++ LD E V + + +
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K 193
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
+T ++ H ADR+IV E
Sbjct: 194 GRTVIIIAHRLSTVKN-ADRIIVME 217
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDW 140
K T HR T K +P G LVG G GKST K+L RF +
Sbjct: 29 KQTNHR----TLKSINFFIP-SGTTCALVGHTGSGKSTIAKLLY--------RFYDAEGD 75
Query: 141 QEILTYFRGSELQNYFTRILEDNLKAIIK--PQYVDHIPKAVQGNV--GQVLDQKDERDM 196
+I G + N + R +++++II PQ + ++ N+ G+ LD DE +
Sbjct: 76 IKI-----GGKNVNKYNR---NSIRSIIGIVPQDTILFNETIKYNILYGK-LDATDEEVI 126
Query: 197 KADLCTDL-----DLNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYL 247
KA L L + D VG+ LSGGE QR AIA +++ +I +FDE +S L
Sbjct: 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL 186
Query: 248 DVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292
D K + V LR N +I++ H LS + I GK
Sbjct: 187 DSKTEYLFQKAVED-LRKNRTLIIIAHRLSTISSAESIILLNKGK 230
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 378 VMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVS-YKPQKIS------PK----F 426
++G G+GK+T ++L + D++I NV+ Y I P+ F
Sbjct: 50 ALVGHTGSGKSTIAKLLYRFYDAEG----DIKIGGKNVNKYNRNSIRSIIGIVPQDTILF 105
Query: 427 QSTVRH-LLHQKIRDS------YTHPQFVSDVMK--PLLIEQLMDQEVVNLSGGELQRVA 477
T+++ +L+ K+ + T + D ++ P + ++ + + LSGGE QR+A
Sbjct: 106 NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIA 165
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
+ CL K I + DE ++ LDS+ + K ++ L +T ++ H
Sbjct: 166 IARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED--LRKNRTLIIIAH 212
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNNPPDWQEILTYFRGSELQNY 155
G+ L + G G GKST L+I+AG ++P G R + I F+ E Q +
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF 92
Query: 156 FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVG 215
R+ D + +K Y D P + KA LD + DR
Sbjct: 93 AERVF-DEVAFAVKNFYPDRDPVPLV--------------KKAMEFVGLDFDSFKDRVPF 137
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275
LSGGE +R AIA V V +I + DEP LD + + ++V VI++ HD
Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
Query: 276 L-SVLDYLSDFICCLYGK 292
+ +V++++ + GK
Sbjct: 198 IETVINHVDRVVVLEKGK 215
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 353 PTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP- 411
P K N L + EGE +++ G G+GK+T ++++AGL++P S DV
Sbjct: 17 PLEKKALENVSLVINEGE-----CLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDG 68
Query: 412 EFNVSYKPQK-ISPKFQSTVRHLLHQKIRD--SYTHPQFVSDVMKPLLIEQLM------- 461
E Y+ ++ I FQ +++ D ++ F D L+++ M
Sbjct: 69 ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF 128
Query: 462 ----DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
D+ LSGGE +RVA+ + DI ++DEP LD E + ++++++
Sbjct: 129 DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
KT ++ HD DRV+V E
Sbjct: 189 -KTVILISHDIETVINHVDRVVVLE 212
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNNPPDWQEILTYFRGSELQNY 155
G+ L + G G GKST L+I+AG ++P G R + I F+ E Q +
Sbjct: 35 GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF 94
Query: 156 FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVG 215
R+ D + +K Y D P + KA LD + DR
Sbjct: 95 AERVF-DEVAFAVKNFYPDRDPVPLV--------------KKAMEFVGLDFDSFKDRVPF 139
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275
LSGGE +R AIA V V +I + DEP LD + + ++V VI++ HD
Sbjct: 140 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
Query: 276 L-SVLDYLSDFICCLYGK 292
+ +V++++ + GK
Sbjct: 200 IETVINHVDRVVVLEKGK 217
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 353 PTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP- 411
P K N L + EGE +++ G G+GK+T ++++AGL++P S DV
Sbjct: 19 PLEKKALENVSLVINEGE-----CLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDG 70
Query: 412 EFNVSYKPQK-ISPKFQSTVRHLLHQKIRD--SYTHPQFVSDVMKPLLIEQLM------- 461
E Y+ ++ I FQ +++ D ++ F D L+++ M
Sbjct: 71 ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF 130
Query: 462 ----DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
D+ LSGGE +RVA+ + DI ++DEP LD E + ++++++
Sbjct: 131 DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 190
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
KT ++ HD DRV+V E
Sbjct: 191 -KTVILISHDIETVINHVDRVVVLE 214
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 19/197 (9%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--------VEDSDVEIPEFN 414
+L + GE +I+ ++G NG GK+T + AG +E +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
+Y Q+ +P F + V H L D T + ++DV L ++ + + LSGGE Q
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 133
Query: 475 RVALCLCL------GKPA-DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV-EH 526
RV L + PA + L+DEP LD Q+ K++ L + A V H
Sbjct: 134 RVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS--ALCQQGLAIVXSSH 191
Query: 527 DFIMATYLADRVIVYEG 543
D A R + +G
Sbjct: 192 DLNHTLRHAHRAWLLKG 208
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
R G++L LVG NG GKST L AG G+ + F G L+ + L
Sbjct: 24 RAGEILHLVGPNGAGKSTLLARXAGXTS---GKGS---------IQFAGQPLEAWSATKL 71
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
+ +A + Q V + K ++ D+ L L+ + R+ LSGG
Sbjct: 72 ALH-RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG 130
Query: 221 ELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
E QR +A V +Q ++ + DEP + LDV Q+ +++ +L + ++
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSS 190
Query: 274 HDLS 277
HDL+
Sbjct: 191 HDLN 194
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ----NYF 156
+ G+V+G+VG G GKST K++ RF P + Q ++ G +L N+
Sbjct: 29 KQGEVIGIVGRAGSGKSTLTKLIQ--------RFYIPENGQVLID---GHDLALADPNWL 77
Query: 157 TR----ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DLNQVI 210
R +L+DN+ ++ +D+I A G + + + D ++L N ++
Sbjct: 78 RRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 135
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
LSGG+ QR AIA V N +I +FDE +S LD + + + + + + VI
Sbjct: 136 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT-VI 194
Query: 271 VVEHDLSVLDYLSDFICCLYGK 292
++ H LS + I GK
Sbjct: 195 IIAHRLSTVKNADRIIVMEKGK 216
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 37/205 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE +I ++G G+GK+T +++ P++ ++ D+ + + N
Sbjct: 23 NINLSIKQGE-----VIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN-- 75
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ +++ Q V LL++ I D S +P F+S++ +
Sbjct: 76 WLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY-- 131
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++ ++ LSGG+ QR+A+ L I + DE ++ LD E V + + +
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K 189
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
+T ++ H ADR+IV E
Sbjct: 190 GRTVIIIAHRLSTVKN-ADRIIVME 213
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 29/201 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-------DSVEDSDVEIPEF 413
N L + EGEF + ++G +G+GK+T + ++ L KP D+++ +D++ E
Sbjct: 23 NVNLNIKEGEF-----VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 414 NVSYKPQKISPKFQ-----------STVRHLLHQKIRDSYTHPQFVSDVMKPL----LIE 458
+ KI FQ V L K R + + + ++ L L E
Sbjct: 78 -TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
+ + + LSGG+ QRVA+ L I L D+P+ LDS+ +++K+
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 519 KTAFVVEHDFIMATYLADRVI 539
KT VV HD +A + +R+I
Sbjct: 197 KTVVVVTHDINVARF-GERII 216
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 12/188 (6%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF------NNPPDWQEILTYFRGSELQN 154
+ G+ + ++G +G GKST L I+ KP G N D E LT R ++
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDE-LTKIRRDKIGF 87
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
F + NL ++ +P + +++ +R ++ +L+ + +
Sbjct: 88 VFQQF---NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE-ERFANHKP 143
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS-YVIVVE 273
LSGG+ QR AIA N I + D+P+ LD K K Q+++ L + V+VV
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203
Query: 274 HDLSVLDY 281
HD++V +
Sbjct: 204 HDINVARF 211
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 29/201 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-------DSVEDSDVEIPEF 413
N L + EGEF + + G +G+GK+T + ++ L KP D+++ +D++ E
Sbjct: 23 NVNLNIKEGEF-----VSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 414 NVSYKPQKISPKFQ-----------STVRHLLHQKIRDSYTHPQFVSDVMKPL----LIE 458
+ KI FQ V L K R + + + ++ L L E
Sbjct: 78 -TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE 136
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
+ + + LSGG+ QRVA+ L I L DEP+ LDS+ +++K+
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 519 KTAFVVEHDFIMATYLADRVI 539
KT VV HD +A + +R+I
Sbjct: 197 KTVVVVTHDINVARF-GERII 216
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 12/188 (6%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF------NNPPDWQEILTYFRGSELQN 154
+ G+ + + G +G GKST L I+ KP G N D E LT R ++
Sbjct: 29 KEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDE-LTKIRRDKIGF 87
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
F + NL ++ +P + +++ +R ++ +L+ + +
Sbjct: 88 VFQQF---NLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE-ERFANHKP 143
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS-YVIVVE 273
LSGG+ QR AIA N I + DEP+ LD K K Q+++ L + V+VV
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVT 203
Query: 274 HDLSVLDY 281
HD++V +
Sbjct: 204 HDINVARF 211
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ----NYF 156
+ G+V+G+VG +G GKST K++ RF P + Q ++ G +L N+
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLIQ--------RFYIPENGQVLID---GHDLALADPNWL 81
Query: 157 TR----ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DLNQVI 210
R +L+DN+ ++ +D+I A G + + + D ++L N ++
Sbjct: 82 RRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
LSGG+ QR AIA V N +I +FD+ +S LD + + + + + + VI
Sbjct: 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRT-VI 198
Query: 271 VVEHDLSVLDYLSDFICCLYGK 292
++ H LS + I GK
Sbjct: 199 IIAHRLSTVKNADRIIVMEKGK 220
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE +I ++G +G+GK+T +++ P++ ++ D+ + + N
Sbjct: 27 NINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN-- 79
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ +++ Q V LL++ I D S +P F+S++ +
Sbjct: 80 WLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY-- 135
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++ ++ LSGG+ QR+A+ L I + D+ ++ LD E V + + +
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC--K 193
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
+T ++ H ADR+IV E
Sbjct: 194 GRTVIIIAHRLSTVKN-ADRIIVME 217
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 29/201 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-------DSVEDSDVEIPEF 413
N L + EGEF + ++G +G+GK+T + ++ L KP D+++ +D++ E
Sbjct: 23 NVNLNIKEGEF-----VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 414 NVSYKPQKISPKFQ-----------STVRHLLHQKIRDSYTHPQFVSDVMKPL----LIE 458
+ KI FQ V L K R + + + ++ L L E
Sbjct: 78 -TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
+ + + LSGG+ QRVA+ L I L D+P+ LDS+ +++K+
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 519 KTAFVVEHDFIMATYLADRVI 539
KT VV HD +A + +R+I
Sbjct: 197 KTVVVVTHDINVARF-GERII 216
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 12/188 (6%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF------NNPPDWQEILTYFRGSELQN 154
+ G+ + ++G +G GKST L I+ KP G N D E LT R ++
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDE-LTKIRRDKIGF 87
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
F + NL ++ +P + +++ +R ++ +L+ + +
Sbjct: 88 VFQQF---NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE-ERFANHKP 143
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS-YVIVVE 273
LSGG+ QR AIA N I + D+P+ LD K K Q+++ L + V+VV
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203
Query: 274 HDLSVLDY 281
HD++V +
Sbjct: 204 HDINVARF 211
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G+++ ++G NG GKST L++L G L P+ G + G L ++ + L
Sbjct: 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE-----------CHLLGQNLNSWQPKALAR 85
Query: 163 NLKAIIKPQYVD-----HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDL 217
+A+++ QY + + + +Q +D + ++ + D + R+ L
Sbjct: 86 T-RAVMR-QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQ-QVMAQTDCLALAQRDYRVL 142
Query: 218 SGGELQRFAIAVVAVQ------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI- 270
SGGE QR +A V Q DEP+S LD+ + +++R L R +
Sbjct: 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202
Query: 271 VVEHDLSVLDYLSDFICCL 289
V HDL++ +D I L
Sbjct: 203 CVLHDLNLAALYADRIMLL 221
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 43/250 (17%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+ L + GE ++ ++G NG GK+T +R+L G L P + + N++
Sbjct: 29 DVSLHIASGE-----MVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLN---- 76
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK----PL-------LIEQLMDQ------ 463
PK + R ++ Q ++ P VS+V++ P ++Q+M Q
Sbjct: 77 SWQPKALARTRAVMRQYSELAF--PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL 134
Query: 464 ---EVVNLSGGELQRVALCLCLGK-----PADIYL-IDEPSAYLDSEQRIVAAKVIKRFI 514
+ LSGGE QRV L L + P +L +DEP++ LD + +++++
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 515 LHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF-LSHLDITFR 573
V HD +A ADR+++ V C P+ +L L D+
Sbjct: 195 RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC--GTPEEVLNAETLTQWYQADLGVS 252
Query: 574 RDPTNFRPRI 583
R P + P+I
Sbjct: 253 RHPESALPQI 262
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 127/300 (42%), Gaps = 37/300 (12%)
Query: 107 GLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKA 166
G+ G NG GKST ++ +A G+ + P +E T + ++ +
Sbjct: 465 GICGPNGCGKSTLMRAIAN------GQVDGFPTQEECRTVYVEHDIDGTHS--------- 509
Query: 167 IIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFA 226
+D + ++ G + D+ E +++I + LSGG + A
Sbjct: 510 --DTSVLDFVFESGVGTKEAIKDKLIEFGFT---------DEMIAMPISALSGGWKMKLA 558
Query: 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
+A ++NA+I + DEP+++LD + A +V L I + HD LD + ++I
Sbjct: 559 LARAVLRNADILLLDEPTNHLDT---VNVAWLVNYLNTCGITSITISHDSVFLDNVCEYI 615
Query: 287 CCLYG-KPGAYGVVTLPFSVREGINIFLAGFVPTENLRFR-DESLTFRVAETPQESAEEI 344
G K Y F V++ + +L F+ E +T Q++ ++
Sbjct: 616 INYEGLKLRKYKGNFTEF-VKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKV 674
Query: 345 ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404
T ++YP K Q + + + + S I ++G NG GK+T I +L G L P S E
Sbjct: 675 -TNMEFQYPGTSKPQ----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++++ + LSGG ++AL + + ADI L+DEP+ +LD+ V + ++
Sbjct: 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT----VNVAWLVNYLNTC 594
Query: 518 KKTAFVVEHDFIMATYLADRVIVYEG 543
T+ + HD + + + +I YEG
Sbjct: 595 GITSITISHDSVFLDNVCEYIINYEG 620
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
LD V + LSGG+ + +A Q + + DEP++YLD R + ++L
Sbjct: 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALK 945
Query: 264 RPNSYVIVVEHDLSVLDYLSDFICCL 289
VI++ H L++ + +
Sbjct: 946 EFEGGVIIITHSAEFTKNLTEEVWAV 971
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 461 MDQEVVN------LSGGELQRVALCLCLGKPADIYLI--DEPSAYLDSEQRIVAAKVIKR 512
+D E+V+ LSGG Q+V L L G +LI DEP+ YLD + +K +K
Sbjct: 889 LDPEIVSHSRIRGLSGG--QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Query: 513 F 513
F
Sbjct: 947 F 947
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 106 LGLVGTNGIGKSTALKILAGKLKPNLG 132
+ ++G NG GKST + +L G+L P G
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSG 728
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 91/196 (46%), Gaps = 24/196 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG--------RFNNPPDWQEILTYFRGSELQN 154
G++ GL+G NG GK+T L+I++ +KP+ G P + +++++Y E
Sbjct: 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP-EEAGA 99
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
Y N++ I ++V + + +++++ E L + I V
Sbjct: 100 Y------RNMQGIEYLRFVAGFYASSSSEIEEMVERATE---------IAGLGEKIKDRV 144
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
S G +++ IA + N + + DEP+S LDV + ++++ + ++V H
Sbjct: 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
Query: 275 DLSVLDYLSDFICCLY 290
++ +++L D I ++
Sbjct: 205 NMLEVEFLCDRIALIH 220
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 21/191 (10%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---------VEDSDVEIPEFN 414
LK + E + +I ++G NG GKTT +R+++ L+KP S V + E+ +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL- 89
Query: 415 VSYKPQKISP--KFQST--VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSG 470
+SY P++ Q +R + S + V + + + + V S
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149
Query: 471 GELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK---TAFVVEHD 527
G ++++ + L + ++DEP++ LD ++ A+ +++ + A + T V H+
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLD----VLNAREVRKILKQASQEGLTILVSSHN 205
Query: 528 FIMATYLADRV 538
+ +L DR+
Sbjct: 206 MLEVEFLCDRI 216
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ----NYF 156
+ G+V+G+VG +G GKST K++ RF P + Q ++ G +L N+
Sbjct: 27 KQGEVIGIVGRSGSGKSTLTKLIQ--------RFYIPENGQVLID---GHDLALADPNWL 75
Query: 157 TR----ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DLNQVI 210
R +L+DN+ ++ +D+I A G + + + D ++L N ++
Sbjct: 76 RRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
LSGG+ QR AIA V N +I +FDE +S LD
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 37/205 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE +I ++G +G+GK+T +++ P++ ++ D+ + + N
Sbjct: 21 NINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN-- 73
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ +++ Q V LL++ I D S +P F+S++ +
Sbjct: 74 WLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY-- 129
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++ ++ LSGG+ QR+A+ L I + DE ++ LD E V + + +
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI---C 186
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
K ++ + ADR+IV E
Sbjct: 187 KGRTVIIIAARLSTVKNADRIIVME 211
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ----NYF 156
+ G+V+G+VG +G GKST K++ RF P + Q ++ G +L N+
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLIQ--------RFYIPENGQVLID---GHDLALADPNWL 81
Query: 157 TR----ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DLNQVI 210
R +L+DN+ ++ +D+I A G + + + D ++L N ++
Sbjct: 82 RRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
LSGG+ QR AIA V N +I +FDE +S LD
Sbjct: 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 37/205 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE +I ++G +G+GK+T +++ P++ ++ D+ + + N
Sbjct: 27 NINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN-- 79
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ +++ Q V LL++ I D S +P F+S++ +
Sbjct: 80 WLRRQVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY-- 135
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
++ ++ LSGG+ QR+A+ L I + DE ++ LD E V + + +
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI---C 192
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
K ++ + ADR+IV E
Sbjct: 193 KGRTVIIIAARLSTVKNADRIIVME 217
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQ-EILTYFRGSELQNYFTRI 159
G V+ G NGIGK+T LK ++ LKP G +N P + + +F E+
Sbjct: 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKIS 94
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219
+ED LKA+ V+ N +++D + ++ LDL + +G+LS
Sbjct: 95 VEDYLKAVASLY-------GVKVNKNEIMDALESVEV-------LDLK----KKLGELSQ 136
Query: 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
G ++R +A + NAEIY+ D+P +D + K + + +L+ VI+
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 381 GENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYK----PQKISPKFQSTVRHLLHQ 436
G NG GKTT ++ ++ LKP E +P V K P++I + +V L +
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYL-K 100
Query: 437 KIRDSYTHPQFVSDVMKPLLIEQLMD--QEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494
+ Y +++M L +++D +++ LS G ++RV L L A+IY++D+P
Sbjct: 101 AVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160
Query: 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
+D + + KV+K + K+ V+
Sbjct: 161 VVAIDEDSK---HKVLKSILEILKEKGIVI 187
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---NNPPD------WQEILTYFRGSE 151
+P ++ G +G GKST +L +P G P D W+ + + S+
Sbjct: 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV--SQ 83
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
+ +NL ++ Y D ++ QVLD R ++ L+ +V +
Sbjct: 84 DSAIMAGTIRENLTYGLEGDYTDE-------DLWQVLDLAFARSFVENMPDQLN-TEVGE 135
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
R V +SGG+ QR AIA ++N +I M DE ++ LD + + + SL++ + +V
Sbjct: 136 RGV-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT-TLV 193
Query: 272 VEHDLSVL 279
+ H LS +
Sbjct: 194 IAHRLSTI 201
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 20/181 (11%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L+ + E + II G +G GK+T +L +P + E + P N+S + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77
Query: 424 PKFQSTVRHLLHQKIRDSYTHP-----------QFVSDVMKPLLIEQLMDQ---EV---- 465
F S ++ IR++ T+ Q + +E + DQ EV
Sbjct: 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG 137
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
V +SGG+ QR+A+ + I ++DE +A LDSE + K + L +T V+
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS--LMKGRTTLVIA 195
Query: 526 H 526
H
Sbjct: 196 H 196
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
LK + + +++V++G +G+GK+TF+R L L D ++ +++ + N++
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 420 QKISPKFQS-------TVRH---LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV--- 466
+++ FQ TV + L K+R + + + M+ L L D+
Sbjct: 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVR-KWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
+LSGG+ QRVA+ L I L DEP++ LD E V+K+ + + T VV H
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ-LANEGMTMVVVTH 217
Query: 527 DFIMATYLADRVIVYEG 543
+ A + DRV+ +G
Sbjct: 218 EMGFAREVGDRVLFMDG 234
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGG+ QR AIA +I +FDEP+S LD + + V++ L ++VV H++
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219
Query: 277 SVLDYLSDFICCLYG 291
+ D + + G
Sbjct: 220 GFAREVGDRVLFMDG 234
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
LK + + +++V++G +G+GK+TF+R L L D ++ +++ + N++
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 78
Query: 420 QKISPKFQS-------TVRH---LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV--- 466
+++ FQ TV + L K+R + + + M+ L L D+
Sbjct: 79 EEVGMVFQRFNLFPHMTVLNNITLAPMKVR-KWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
+LSGG+ QRVA+ L I L DEP++ LD E V+K+ + + T VV H
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ-LANEGMTMVVVTH 196
Query: 527 DFIMATYLADRVIVYEG 543
+ A + DRV+ +G
Sbjct: 197 EMGFAREVGDRVLFMDG 213
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGG+ QR AIA +I +FDEP+S LD + + V++ L ++VV H++
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 198
Query: 277 SVLDYLSDFICCLYG 291
+ D + + G
Sbjct: 199 GFAREVGDRVLFMDG 213
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
I++ N+ K + T N LH VP GQ+ G++G +G GKST ++ + +P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLH---VP-AGQIYGVIGASGAGKSTLIRCVNLLERP 57
Query: 130 NLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD 189
G D QE LT SEL +I +I + + V GNV L+
Sbjct: 58 TEGSV--LVDGQE-LTTLSESELTKARRQI------GMIFQHFNLLSSRTVFGNVALPLE 108
Query: 190 ----QKDERDMK-ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244
KDE + +L + + L D +LSGG+ QR AIA N ++ + DE +
Sbjct: 109 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168
Query: 245 SYLDVKQRLKAAQVVRSL-LRPNSYVIVVEHDLSVLDYLSDFICCL 289
S LD ++++ + R ++++ H++ V+ + D + +
Sbjct: 169 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVI 214
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 56/262 (21%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVE-I 410
++ N L V G QI ++G +G GK+T IR + L +P V+ ++ +
Sbjct: 18 IQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 72
Query: 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV----- 465
E ++ ++I FQ H + S T +V PL ++ EV
Sbjct: 73 SESELTKARRQIGMIFQ-------HFNLLSSRT---VFGNVALPLELDNTPKDEVKRRVT 122
Query: 466 ----------------VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
NLSGG+ QRVA+ L + L DE ++ LD ++
Sbjct: 123 ELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-----QPSVDCVANAPQSLLTGMNLF 564
+K T ++ H+ + + D V V Q +V V + P++ L F
Sbjct: 183 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA--QKF 240
Query: 565 LS---HLDITFRRDPTNFRPRI 583
+ HLDI P +++ R+
Sbjct: 241 IQSTLHLDI-----PEDYQERL 257
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Query: 81 KDTTHRY-GPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
KD T Y G L + P G+ + LVG +G GKST + + G
Sbjct: 345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI--CL 402
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN-VGQVLDQKDERDMK 197
D ++ Y + + L+ +F ++ N+ + ++I A +G + ++Q +
Sbjct: 403 DGHDVRDY-KLTNLRRHFA-LVSQNVH-LFNDTIANNIAYAAEGEYTREQIEQAARQAHA 459
Query: 198 ADLCTDL--DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
+ ++ L+ VI N LSGG+ QR AIA +++A + + DE +S LD + +A
Sbjct: 460 MEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE-RA 518
Query: 256 AQVVRSLLRPNSYVIVVEHDLSVLD 280
Q L+ N V+V+ H LS ++
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIE 543
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 38/195 (19%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQKISPKFQ--STV 430
+ ++G +G+GK+T + DS ++ DV YK + F S
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR------DYKLTNLRRHFALVSQN 425
Query: 431 RHLLHQKIRDS--------YTHPQ------------FVSDVMKPLLIEQLMDQEVVNLSG 470
HL + I ++ YT Q F+ ++ P ++ ++ + +LSG
Sbjct: 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM--PQGLDTVIGENGTSLSG 483
Query: 471 GELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAAKVIKRFILHAKKTAFVVEHDFI 529
G+ QRVA+ L + A + ++DE ++ LD+E +R + A + + L KT V+ H
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE---LQKNKTVLVIAHRLS 540
Query: 530 MATYLADRVIVYEGQ 544
+ ++V EG+
Sbjct: 541 TIEQADEILVVDEGE 555
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NF + + + I+ +LG+NG GK+T + +L G+ +P +E+ + ++ + PQ
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVYQ-SIGFVPQ 73
Query: 421 KISPKFQSTVRHLL---HQKIRDSYTHP-----QFVSDVMKPLLIEQLMDQEVVNLSGGE 472
S F +V ++ +++ P Q + L + L +E +LSGG+
Sbjct: 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQ 133
Query: 473 LQRVALCLCLGKPADIYLIDEPSAYLD-SEQRIVAAKVI 510
Q + + + + L+DEP++ LD + Q IV + +I
Sbjct: 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 32/167 (19%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G +L ++G NG GKST L +L G +P G+ I Y + +F+
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGK---------IEVYQSIGFVPQFFSSPFAY 81
Query: 163 NLKAIIKPQYVDHI-----PKAVQGNVG-QVLDQKDERDMKADLCTDLDLNQVIDRNVGD 216
++ I+ HI PK+ V Q LD L+L + R
Sbjct: 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY-------------LNLTHLAKREFTS 128
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
LSGG+ Q IA ++ + DEP+S LD+ + +V SLL
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQ----DIVLSLL 171
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
++ I + LSGG + A+A ++NA+I + DEP+++LD + A +V L
Sbjct: 539 DEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDT---VNVAWLVNYLNTCG 595
Query: 267 SYVIVVEHDLSVLDYLSDFICCLYG-KPGAYGVVTLPFSVREGINIFLAGFVPTENLRFR 325
I + HD LD + ++I G K Y F V++ + +L F+
Sbjct: 596 ITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF-VKKCPAAKAYEELSNTDLEFK 654
Query: 326 -DESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENG 384
E +T Q++ ++ T ++YP K Q + + + + S I ++G NG
Sbjct: 655 FPEPGYLEGVKTKQKAIVKV-TNXEFQYPGTSKPQ----ITDINFQCSLSSRIAVIGPNG 709
Query: 385 TGKTTFIRMLAGLLKPDSVE 404
GK+T I +L G L P S E
Sbjct: 710 AGKSTLINVLTGELLPTSGE 729
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LSGG ++AL + + ADI L+DEP+ +LD+ V + ++ T+ + HD
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDT----VNVAWLVNYLNTCGITSITISHD 604
Query: 528 FIMATYLADRVIVYEG 543
+ + + +I YEG
Sbjct: 605 SVFLDNVCEYIINYEG 620
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
LD V + LSGG+ + +A Q + + DEP++YLD R + ++L
Sbjct: 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALK 945
Query: 264 RPNSYVIVVEHDLSVLDYLSDFICCL 289
VI++ H L++ + +
Sbjct: 946 EFEGGVIIITHSAEFTKNLTEEVWAV 971
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 461 MDQEVVN------LSGGELQRVALCLCLGKPADIYLI--DEPSAYLDSEQRIVAAKVIKR 512
+D E+V+ LSGG Q+V L L G +LI DEP+ YLD + +K +K
Sbjct: 889 LDPEIVSHSRIRGLSGG--QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Query: 513 F 513
F
Sbjct: 947 F 947
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 106 LGLVGTNGIGKSTALKILAGKLKPNLG 132
+ ++G NG GKST + +L G+L P G
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSG 728
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 37/300 (12%)
Query: 107 GLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKA 166
G+ G NG GKST + +A G+ + P +E T + ++ +
Sbjct: 459 GICGPNGCGKSTLXRAIAN------GQVDGFPTQEECRTVYVEHDIDGTHS--------- 503
Query: 167 IIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFA 226
+D + ++ G + D+ E ++ I + LSGG + A
Sbjct: 504 --DTSVLDFVFESGVGTKEAIKDKLIEFGFT---------DEXIAXPISALSGGWKXKLA 552
Query: 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
+A ++NA+I + DEP+++LD + A +V L I + HD LD + ++I
Sbjct: 553 LARAVLRNADILLLDEPTNHLDT---VNVAWLVNYLNTCGITSITISHDSVFLDNVCEYI 609
Query: 287 CCLYG-KPGAYGVVTLPFSVREGINIFLAGFVPTENLRFR-DESLTFRVAETPQESAEEI 344
G K Y F V++ + +L F+ E +T Q++ ++
Sbjct: 610 INYEGLKLRKYKGNFTEF-VKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKV 668
Query: 345 ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404
T ++YP K Q + + + + S I ++G NG GK+T I +L G L P S E
Sbjct: 669 -TNXEFQYPGTSKPQ----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 723
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LSGG ++AL + + ADI L+DEP+ +LD+ V + ++ T+ + HD
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDT----VNVAWLVNYLNTCGITSITISHD 598
Query: 528 FIMATYLADRVIVYEG 543
+ + + +I YEG
Sbjct: 599 SVFLDNVCEYIINYEG 614
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
LD V + LSGG+ + +A Q + + DEP++YLD R + ++L
Sbjct: 883 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALK 939
Query: 264 RPNSYVIVVEHDLSVLDYLSDFICCL 289
VI++ H L++ + +
Sbjct: 940 EFEGGVIIITHSAEFTKNLTEEVWAV 965
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 461 MDQEVVN------LSGGELQRVALCLCLGKPADIYLI--DEPSAYLDSEQRIVAAKVIKR 512
+D E+V+ LSGG Q+V L L G +LI DEP+ YLD + +K +K
Sbjct: 883 LDPEIVSHSRIRGLSGG--QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 940
Query: 513 F 513
F
Sbjct: 941 F 941
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 106 LGLVGTNGIGKSTALKILAGKLKPNLG 132
+ ++G NG GKST + +L G+L P G
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELLPTSG 722
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF 156
L +P G+ + LVG +G GKST ++ RF + D EIL G +L+ Y
Sbjct: 364 LKIP-AGKTVALVGRSGSGKSTIASLIT--------RFYDI-DEGEIL--MDGHDLREYT 411
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDM---------KADLCTDLD-- 205
L + + + Q V V N+ ++ R+ D +D
Sbjct: 412 LASLRNQVALV--SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNG 469
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
L+ VI N LSGG+ QR AIA ++++ I + DE +S LD + +A Q L+
Sbjct: 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE-RAIQAALDELQK 528
Query: 266 NSYVIVVEHDLSVLDYLSDFICC 288
N +V+ H LS ++ + +
Sbjct: 529 NRTSLVIAHRLSTIEKADEIVVV 551
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DSDVEIPEFNVSY 417
N LK+ G + + ++G +G+GK+T ++ D E D ++ E+ ++
Sbjct: 361 NINLKIPAG-----KTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGH-DLREYTLAS 414
Query: 418 KPQKIS------PKFQSTVRHLLHQKIRDSYTHPQ--------FVSDVMKPL--LIEQLM 461
+++ F TV + + + Y+ Q + D + + ++ ++
Sbjct: 415 LRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVI 474
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAAKVIKRFILHAKKT 520
+ V LSGG+ QR+A+ L + + I ++DE ++ LD+E +R + A + + L +T
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRT 531
Query: 521 AFVVEHDFIMATYLADRVIVYE 542
+ V+ H + AD ++V E
Sbjct: 532 SLVIAHR-LSTIEKADEIVVVE 552
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT----YFRG-----SE 151
+ GQ + LVG +G GKST ++++ P G + D Q+I T Y R S+
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS--IDGQDIRTINVRYLREIIGVVSQ 471
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
F + +N++ + +D I KAV+ + + D L D ++
Sbjct: 472 EPVLFATTIAENIRYGREDVTMDEIEKAVK--------EANAYDFIMKLPHQFD--TLVG 521
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
LSGG+ QR AIA V+N +I + DE +S LD + Q R IV
Sbjct: 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIV 580
Query: 272 VEHDLSVL 279
+ H LS +
Sbjct: 581 IAHRLSTV 588
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+ GQ L LVG++G GKST +++L RF +P + G E++ + L
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLLE--------RFYDPMAGS---VFLDGKEIKQLNVQWL 1105
Query: 161 EDNLKAIIK-PQYVD-HIPKAVQ-GNVGQVLDQKDERDMKADLCTDLDLNQVIDR----- 212
L + + P D I + + G+ +V+ E ++A + +++Q ID
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY--EEIVRA--AKEANIHQFIDSLPDKY 1161
Query: 213 --NVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
VGD LSGG+ QR AIA V+ I + DE +S LD + K Q R
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEALDKAREG 1220
Query: 267 SYVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
IV+ H LS + + GK +G
Sbjct: 1221 RTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 349 RYKYPTMVKTQ--GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DS 402
+ YP+ + Q LKV G Q + ++G +G GK+T ++++ L P S
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSG-----QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 403 VEDSDVEIPEFN--------VSYKPQKISPKFQSTVRH----LLHQKIRDSYTHPQFVSD 450
++ D+ VS +P + +R+ + +I +
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 451 VMK-PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
+MK P + L+ + LSGG+ QR+A+ L + I L+DE ++ LD+E V
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 510 IKRFILHAKKTAFVVEH 526
+ + +T V+ H
Sbjct: 569 LDK--AREGRTTIVIAH 583
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDSDVEIPEFNVSYKPQKISPKFQ 427
E Q + ++G +G GK+T +++L P SV EI + NV + ++ Q
Sbjct: 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 428 -------STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-----------EVVNLS 469
S ++ + ++ + V K I Q +D + LS
Sbjct: 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVR-AAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--KTAFVVEH 526
GG+ QR+A+ L + I L+DE ++ LD+E KV++ + A+ +T V+ H
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEALDKAREGRTCIVIAH 1228
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT----YFRG-----SE 151
+ GQ + LVG +G GKST ++++ P G + D Q+I T Y R S+
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS--IDGQDIRTINVRYLREIIGVVSQ 471
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
F + +N++ + +D I KAV+ + + D L D ++
Sbjct: 472 EPVLFATTIAENIRYGREDVTMDEIEKAVK--------EANAYDFIMKLPHQFD--TLVG 521
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
LSGG+ QR AIA V+N +I + DE +S LD + Q R IV
Sbjct: 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIV 580
Query: 272 VEHDLSVL 279
+ H LS +
Sbjct: 581 IAHRLSTV 588
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+ GQ L LVG++G GKST +++L RF +P + G E++ + L
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLLE--------RFYDPMAGS---VFLDGKEIKQLNVQWL 1105
Query: 161 EDNLKAIIK-PQYVD-HIPKAVQ-GNVGQVLDQKDERDMKADLCTDLDLNQVIDR----- 212
L + + P D I + + G+ +V+ E ++A + +++Q ID
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY--EEIVRA--AKEANIHQFIDSLPDKY 1161
Query: 213 --NVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
VGD LSGG+ QR AIA V+ I + DE +S LD + K Q R
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEALDKAREG 1220
Query: 267 SYVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
IV+ H LS + + GK +G
Sbjct: 1221 RTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 349 RYKYPTMVKTQ--GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DS 402
+ YP+ + Q LKV G Q + ++G +G GK+T ++++ L P S
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSG-----QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 403 VEDSDVEIPEFN--------VSYKPQKISPKFQSTVRH----LLHQKIRDSYTHPQFVSD 450
++ D+ VS +P + +R+ + +I +
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 451 VMK-PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
+MK P + L+ + LSGG+ QR+A+ L + I L+DE ++ LD+E V
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 510 IKRFILHAKKTAFVVEH 526
+ + +T V+ H
Sbjct: 569 LDK--AREGRTTIVIAH 583
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDSDVEIPEFNVSYKPQKISPKFQ 427
E Q + ++G +G GK+T +++L P SV EI + NV + ++ Q
Sbjct: 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 428 -------STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-----------EVVNLS 469
S ++ + ++ + V K I Q +D + LS
Sbjct: 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVR-AAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--KTAFVVEH 526
GG+ QR+A+ L + I L+DE ++ LD+E KV++ + A+ +T V+ H
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEALDKAREGRTCIVIAH 1228
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
RPG+V LVG NG GKST +L +P G+ G L Y R L
Sbjct: 41 RPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL-----------LLDGKPLPQYEHRYL 89
Query: 161 EDNLKAIIK-PQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI--------- 210
+ A+ + PQ +++Q N+ L QK + + I
Sbjct: 90 HRQVAAVGQEPQVFG---RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDT 146
Query: 211 --DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV-RSLLRPNS 267
D LSGG+ Q A+A ++ + + D+ +S LD +L+ Q++ S R +
Sbjct: 147 EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 206
Query: 268 YVIVVEHDLSVLDYLSDFICCLYG 291
V+++ LS+++ +D I L G
Sbjct: 207 SVLLITQHLSLVEQ-ADHILFLEG 229
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 81/192 (42%), Gaps = 27/192 (14%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DSDVEIPEFNVSY----------KPQ 420
++ ++G NG+GK+T +L L +P + D +P++ Y +PQ
Sbjct: 43 GEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGK-PLPQYEHRYLHRQVAAVGQEPQ 101
Query: 421 KISPKFQSTVRHLLHQK---------IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG 471
Q + + L QK S H F+S + P + +D+ LSGG
Sbjct: 102 VFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH-SFISGL--PQGYDTEVDEAGSQLSGG 158
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531
+ Q VAL L + + ++D+ ++ LD+ ++ +++ ++ ++ +
Sbjct: 159 QRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV 218
Query: 532 TYLADRVIVYEG 543
AD ++ EG
Sbjct: 219 EQ-ADHILFLEG 229
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 78/199 (39%), Gaps = 46/199 (23%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
PGQ L LVG +G GKST L++L FR ++ + RI
Sbjct: 79 PGQTLALVGPSGAGKSTILRLL-----------------------FRFYDISSGCIRIDG 115
Query: 162 DNLKAIIKPQYVDHIPKAVQGNV------------GQVLDQKDERDMKADLCTDLDL--- 206
++ + + HI Q V G+V DE + A D
Sbjct: 116 QDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMA 175
Query: 207 ------NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
QV +R + LSGGE QR AIA ++ I + DE +S LD +A Q
Sbjct: 176 FPEGYRTQVGERGL-KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE-RAIQASL 233
Query: 261 SLLRPNSYVIVVEHDLSVL 279
+ + N IVV H LS +
Sbjct: 234 AKVCANRTTIVVAHRLSTV 252
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 374 SQIIVMLGENGTGKTTFIRML-------AGLLKPDSVEDSDVEIPEF--NVSYKPQKISP 424
Q + ++G +G GK+T +R+L +G ++ D + S V ++ PQ
Sbjct: 80 GQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139
Query: 425 KFQSTVRHLLHQKIR------DSYTHPQFVSDVMK--PLLIEQLMDQEVVNLSGGELQRV 476
+ ++ + ++ ++ + D + P + + + LSGGE QRV
Sbjct: 140 FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199
Query: 477 ALCLCLGKPADIYLIDEPSAYLD-SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535
A+ + K I L+DE ++ LD S +R + A + K + A +T VV H A
Sbjct: 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAK---VCANRTTIVVAHRLSTVVN-A 255
Query: 536 DRVIV 540
D+++V
Sbjct: 256 DQILV 260
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
I++ N+ K + T N LH VP GQ+ G++G +G GKST ++ + +P
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLH---VP-AGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 130 NLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD 189
G D QE LT SEL +I +I + + V GNV L+
Sbjct: 81 TEGSV--LVDGQE-LTTLSESELTKARRQI------GMIFQHFNLLSSRTVFGNVALPLE 131
Query: 190 ----QKDERDMK-ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244
KDE + +L + + L D +LSGG+ QR AIA N ++ + D+ +
Sbjct: 132 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT 191
Query: 245 SYLDVKQRLKAAQVVRSL-LRPNSYVIVVEHDLSVLDYLSDFICCL 289
S LD ++++ + R ++++ H++ V+ + D + +
Sbjct: 192 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVI 237
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 52/260 (20%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVE-I 410
++ N L V G QI ++G +G GK+T IR + L +P V+ ++ +
Sbjct: 41 IQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 95
Query: 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV----- 465
E ++ ++I FQ H + S T +V PL ++ EV
Sbjct: 96 SESELTKARRQIGMIFQ-------HFNLLSSRT---VFGNVALPLELDNTPKDEVKRRVT 145
Query: 466 ----------------VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
NLSGG+ QRVA+ L + L D+ ++ LD ++
Sbjct: 146 ELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-----QPSVDCVANAPQSLLTGMNLF 564
+K T ++ H+ + + D V V Q +V V + P++ L +
Sbjct: 206 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
Query: 565 LS-HLDITFRRDPTNFRPRI 583
+ HLDI P +++ R+
Sbjct: 266 STLHLDI-----PEDYQERL 280
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYKPQKI 422
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +S+ Q
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSGRISFCSQN- 107
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGG 471
S T++ + I SY ++ S V+K +E+ ++ + + LSGG
Sbjct: 108 SWIMPGTIKENI---IGVSYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529
+ R++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILVTSKME 220
Query: 530 MATYLADRVIVYEGQP 545
+I++EG
Sbjct: 221 HLKKADKILILHEGSS 236
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 47/235 (20%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ + +++
Sbjct: 59 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCS--- 105
Query: 152 LQNYFTR--ILEDNLKAIIKPQY-VDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
QN + +++N+ + +Y + KA Q + + + + E+D N
Sbjct: 106 -QNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ--LEEDISKFAEKD-----------NI 151
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
V+ LSGG+ R ++A ++A++Y+ D P YLDV + + L N
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 269 VIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLR 323
I+V + L +D I L+ EG + F F +NLR
Sbjct: 212 RILVTSKMEHLKK-ADKILILH----------------EGSSYFYGTFSELQNLR 249
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF 156
L +P G+ + LVG +G GKST ++ RF D E G +L+ Y
Sbjct: 364 LKIP-AGKTVALVGRSGSGKSTIASLIT--------RFY---DIDEGHILMDGHDLREYT 411
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDM---------KADLCTDLD-- 205
L + + + Q V V N+ ++ R+ D +D
Sbjct: 412 LASLRNQVALV--SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG 469
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
L+ +I N LSGG+ QR AIA ++++ I + DE +S LD + +A Q L+
Sbjct: 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE-RAIQAALDELQK 528
Query: 266 NSYVIVVEHDLSVLDYLSDFICC 288
N +V+ H LS ++ + +
Sbjct: 529 NRTSLVIAHRLSTIEQADEIVVV 551
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 457 IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAAKVIKRFIL 515
++ ++ + V LSGG+ QR+A+ L + + I ++DE ++ LD+E +R + A + + L
Sbjct: 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE---L 526
Query: 516 HAKKTAFVVEHDFIMATYLADRVIVYE 542
+T+ V+ H + AD ++V E
Sbjct: 527 QKNRTSLVIAHR-LSTIEQADEIVVVE 552
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 26/175 (14%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYKPQKI 422
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +S+ Q
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSGRISFCSQ-F 107
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGG 471
S T++ + + SY ++ S V+K +E+ ++ + + LSGG
Sbjct: 108 SWIMPGTIKENIIAGV--SYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGITLSGG 164
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
+ R++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 165 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILV 216
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 41/167 (24%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ +
Sbjct: 59 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNV--GQVLDQKDERDMKADLCTDLDLNQV 209
+ Q+ +P ++ N+ G D+ R + + D+++
Sbjct: 100 -------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKF 146
Query: 210 IDRN---VGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
+++ +G+ LSGG+ R ++A ++A++Y+ D P YLDV
Sbjct: 147 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 27/175 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYKPQKI 422
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +S+ Q
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSGRISFCSQN- 107
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGG 471
S T++ + I SY ++ S V+K +E+ ++ + + LSGG
Sbjct: 108 SWIMPGTIKENI---IGVSYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
+ R++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILV 215
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 47/235 (20%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ + +++
Sbjct: 59 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCS--- 105
Query: 152 LQNYFTR--ILEDNLKAIIKPQY-VDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
QN + +++N+ + +Y + KA Q + + + + E+D N
Sbjct: 106 -QNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ--LEEDISKFAEKD-----------NI 151
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
V+ LSGG+ R ++A ++A++Y+ D P YLDV + + L N
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 269 VIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLR 323
I+V + L +D I L+ EG + F F +NLR
Sbjct: 212 RILVTSKMEHLKK-ADKILILH----------------EGSSYFYGTFSELQNLR 249
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 27/175 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYKPQKI 422
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +S+ Q
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSGRISFCSQ-F 77
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGG 471
S T++ + I SY ++ S V+K +E+ ++ + + LSGG
Sbjct: 78 SWIMPGTIKENI---IGVSYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGITLSGG 133
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
+ R++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 134 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILV 185
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 34/163 (20%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ +
Sbjct: 29 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS---------- 72
Query: 152 LQNYFTRILEDNLKA-IIKPQYVDH----IPKAVQGNVGQVLDQKDERDMKADLCTDLDL 206
+ F+ I+ +K II Y ++ + KA Q + + + + E+D
Sbjct: 73 FCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQ--LEEDISKFAEKD----------- 119
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
N V+ LSGG+ R ++A ++A++Y+ D P YLDV
Sbjct: 120 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 162
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 19/226 (8%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
I++ N+ K + T N LH VP GQ+ G++G +G GKST ++ + +P
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLH---VP-AGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 130 NLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD 189
G D QE LT SEL +I I + + V GNV L+
Sbjct: 81 TEGSV--LVDGQE-LTTLSESELTKARRQI------GXIFQHFNLLSSRTVFGNVALPLE 131
Query: 190 ----QKDERDMK-ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244
KDE + +L + + L D +LSGG+ QR AIA N ++ + D+ +
Sbjct: 132 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT 191
Query: 245 SYLDVKQRLKAAQVVRSL-LRPNSYVIVVEHDLSVLDYLSDFICCL 289
S LD ++++ + R ++++ H+ V+ + D + +
Sbjct: 192 SALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVI 237
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 52/260 (20%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVE-I 410
++ N L V G QI ++G +G GK+T IR + L +P V+ ++ +
Sbjct: 41 IQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 95
Query: 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV----- 465
E ++ ++I FQ H + S T +V PL ++ EV
Sbjct: 96 SESELTKARRQIGXIFQ-------HFNLLSSRT---VFGNVALPLELDNTPKDEVKRRVT 145
Query: 466 ----------------VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
NLSGG+ QRVA+ L + L D+ ++ LD ++
Sbjct: 146 ELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-----QPSVDCVANAPQSLLTGMNLF 564
+K T ++ H+ + + D V V Q +V V + P++ L +
Sbjct: 206 LKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
Query: 565 LS-HLDITFRRDPTNFRPRI 583
+ HLDI P +++ R+
Sbjct: 266 STLHLDI-----PEDYQERL 280
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 36/217 (16%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV------------ 403
+K L ++E T ++GE+ +GK+T I + L P+
Sbjct: 21 IKAADGISLDILENSVT-----AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKD 75
Query: 404 -----EDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK-------IRDSYTHPQFVSDV 451
E+ +I ++ PQ T++ + H K +R ++H + +
Sbjct: 76 LLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVR--WSHSELIEKA 133
Query: 452 MKPLLIEQLMDQEVVN-----LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506
+ L + +L + V+N LSGG QRV + L L + ++DEP++ LD +
Sbjct: 134 SEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHI 193
Query: 507 AKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
+++K K T V HD +A LAD+V V G
Sbjct: 194 IQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYG 230
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 38/210 (18%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNL 164
V +VG + GKST ++ + L PN GR + ++G +L + E+ L
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPN-GRILSG------RVLYKGKDLLT----MREEEL 84
Query: 165 KAIIKPQYVDHIPKAVQGNVG---QVLDQ-KD---------------ERDMKADLCTDLD 205
+ I + + + +P+A Q ++ +V++ KD E+ + L+
Sbjct: 85 RKI-RWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLN 143
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
V++ LSGG QR IA+ + + + + DEP+S LDV L A +++ L
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDV---LTQAHIIQLLKEL 200
Query: 266 NSY----VIVVEHDLSVLDYLSDFICCLYG 291
+I V HD++V L+D + +YG
Sbjct: 201 KKMLKITLIFVTHDIAVAAELADKVAVIYG 230
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 36/180 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +IS
Sbjct: 36 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKH------SGRIS 84
Query: 424 PKFQSTVRHLLHQKIRD------SYTHPQFVSDVMKPLLIEQ-----------LMDQEVV 466
F S ++ I++ SY ++ S V+K +E+ ++ + +
Sbjct: 85 --FCSQFSWIMPGTIKENIIFGVSYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGI 141
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG+ R++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILV 198
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 35/164 (21%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ +
Sbjct: 41 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS---------- 84
Query: 152 LQNYFTRILEDNLKA--IIKPQYVDH----IPKAVQGNVGQVLDQKDERDMKADLCTDLD 205
+ F+ I+ +K I Y ++ + KA Q + + + + E+D
Sbjct: 85 FCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ--LEEDISKFAEKD---------- 132
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
N V+ LSGG+ R ++A ++A++Y+ D P YLDV
Sbjct: 133 -NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 175
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 36/180 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +IS
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKH------SGRIS 72
Query: 424 PKFQSTVRHLLHQKIRD------SYTHPQFVSDVMKPLLIEQ-----------LMDQEVV 466
F S ++ I++ SY ++ S V+K +E+ ++ + +
Sbjct: 73 --FCSQFSWIMPGTIKENIIFGVSYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGI 129
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG+ R++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILV 186
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 35/164 (21%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ +
Sbjct: 29 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS---------- 72
Query: 152 LQNYFTRILEDNLKA--IIKPQYVDH----IPKAVQGNVGQVLDQKDERDMKADLCTDLD 205
+ F+ I+ +K I Y ++ + KA Q + + + + E+D
Sbjct: 73 FCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ--LEEDISKFAEKD---------- 120
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
N V+ LSGG+ R ++A ++A++Y+ D P YLDV
Sbjct: 121 -NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYK 418
GN LK + +++ + G G+GKT+ + ++ G L E S+ I VS+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-----EASEGIIKHSGRVSFC 104
Query: 419 PQKISPKFQSTVRHLLHQKIRDSYTHP------QFVSDVMKPLLIEQ---LMDQEVVNLS 469
Q S T++ + D Y + Q D+ K EQ ++ + V LS
Sbjct: 105 SQ-FSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQDITK--FAEQDNTVLGEGGVTLS 161
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
GG+ R++L + K AD+YL+D P YLD +E+++ + V K L A KT +V
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK---LMANKTRILV 215
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 24/217 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G++L + G+ G GK++ L ++ G+L+ + G I+ + + F+ I+
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEG----------IIKHSGRVSFCSQFSWIMPG 113
Query: 163 NLKA-IIKPQYVDHIPKAV--QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219
+K II Y ++ K+V + Q + + E+D N V+ LSG
Sbjct: 114 TIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQD-----------NTVLGEGGVTLSG 162
Query: 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279
G+ R ++A ++A++Y+ D P YLDV + + L N I+V + L
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 222
Query: 280 DYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316
+ G YG + S+R + L G+
Sbjct: 223 RKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 259
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 88/216 (40%), Gaps = 47/216 (21%)
Query: 196 MKADLCTDLDLNQVI-------DRNVGDLSGGELQRFAIAVVAVQN--AEIYMFDEPSSY 246
M ADL LD+ + DR+ LS GELQR +A N +Y+ DEPS+
Sbjct: 352 MAADLVKRLDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAG 411
Query: 247 LDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL---DYLSDFICCLYGKPGAYGVVTLPF 303
L + +L R + + VVEHDL V+ D+L D P
Sbjct: 412 LHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVG---------------PE 456
Query: 304 SVREGINIFLAGFVPTENLRFRDESLTFRV--------AETPQESAEEIETYARYKYPTM 355
+ +G I +G P E L+ ES T + TP+E A +E
Sbjct: 457 AGEKGGEILYSG--PPEGLKHVPESQTGQYLFADRHTEPHTPREPAGWLELNG------- 507
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFI 391
T+ N L ++ F + + G +G+GK+T +
Sbjct: 508 -VTRNN--LDNLDVRFPLGVMTSVTGVSGSGKSTLV 540
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 25/136 (18%)
Query: 462 DQEVVNLSGGELQRVALCLCLGKP--ADIYLIDEPSAYL---DSEQRIVAAKVIKRFILH 516
D+ LS GELQR+ L L +Y++DEPSA L D+E + A + +KR
Sbjct: 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR---- 429
Query: 517 AKKTAFVVEHDFIM---ATYLAD---------RVIVYEGQPSVDCVANAPQSLLTGMNLF 564
+ FVVEHD + A +L D I+Y G P + + + P+S TG LF
Sbjct: 430 GGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPP--EGLKHVPES-QTGQYLF 486
Query: 565 LS-HLDITFRRDPTNF 579
H + R+P +
Sbjct: 487 ADRHTEPHTPREPAGW 502
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 216 DLSGGELQRFAIAVV---AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
+LSGGE QR +A + + +Y+ DEP++ L + + + L+ + VI V
Sbjct: 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV 789
Query: 273 EHDLSVLDYLSDFICCLYGKPGA 295
EH + V+ SD++ + PGA
Sbjct: 790 EHKMQVV-AASDWVLDI--GPGA 809
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 461 MDQEVVNLSGGELQRVALCLCL---GKPADIYLIDEPSAYLD-SEQRIVAAKVIKRFILH 516
+ Q LSGGE QR+ L L G+ +Y++DEP+ L ++ + +++K ++
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK--LVD 781
Query: 517 AKKTAFVVEH 526
A T VEH
Sbjct: 782 AGNTVIAVEH 791
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Query: 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEF 413
+ G LK + ++ +LG NG GK+T + G+LKP S ++ ++
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 414 NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQF------------VSDVMKPLLIEQLM 461
+ + I FQ L + + V + +K IE L
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK 137
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK-- 519
D+ LS G+ +RVA+ L + ++DEP+A LD + ++++K + K+
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP---MGVSEIMKLLVEMQKELG 194
Query: 520 -TAFVVEHDFIMATYLADRVIV 540
T + HD + D V V
Sbjct: 195 ITIIIATHDIDIVPLYCDNVFV 216
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 20/210 (9%)
Query: 88 GPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILT 145
G + K + + R G+V ++G NG+GKST + G LKP+ GR F+N P +
Sbjct: 20 GTHALKGINMNIKR-GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP-----ID 73
Query: 146 YFRGS--ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTD 203
Y R +L+ + +D + + G V L + + R +
Sbjct: 74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVS---FGAVNMKLPEDEIRKRVDNALKR 130
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
+ + D+ LS G+ +R AIA V V ++ + DEP++ LD + +++++ L+
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD---PMGVSEIMKLLV 187
Query: 264 RPNS----YVIVVEHDLSVLDYLSDFICCL 289
+I+ HD+ ++ D + +
Sbjct: 188 EMQKELGITIIIATHDIDIVPLYCDNVFVM 217
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 28/209 (13%)
Query: 346 TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405
T+AR PT+ + EG ++ ++G+ G GK++ + L L + D VE
Sbjct: 12 TWARSDPPTL----NGITFSIPEGA-----LVAVVGQVGCGKSSLLSAL--LAEMDKVE- 59
Query: 406 SDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ-KIRDSYTHPQFVSDVMKPLLIEQL---- 460
V I + +V+Y PQ+ + S ++L ++ + Y + + P L E L
Sbjct: 60 GHVAI-KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL-EILPSGD 117
Query: 461 ---MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAAKVIKRFILH 516
+ ++ VNLSGG+ QRV+L + ADIYL D+P + +D+ + + VI +
Sbjct: 118 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177
Query: 517 AKKTAFVVEHDFIMATYL--ADRVIVYEG 543
KT +V H +YL D +IV G
Sbjct: 178 KNKTRILVTHSM---SYLPQVDVIIVMSG 203
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
D ++ ++ V +LSGG+ QR ++A NA+IY+FD+P S +D + +++
Sbjct: 117 DRTEIGEKGV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH---VGKHIFENVIG 172
Query: 265 P-----NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
P N I+V H +S L + I GK G
Sbjct: 173 PKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMG 210
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 36/211 (17%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI--LTYFRGSELQNYF-- 156
PG+V ++G NG GKST LAG+ D++ F+G +L
Sbjct: 25 HPGEVHAIMGPNGSGKSTLSATLAGR-----------EDYEVTGGTVEFKGKDLLALSPE 73
Query: 157 TRILEDNLKAIIKPQYVDHIP------------KAVQGNVGQ-VLDQKDERDMKADLCTD 203
R E A QY IP AV+ GQ LD+ D +D+ +
Sbjct: 74 DRAGEGIFMAF---QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 130
Query: 204 LDL-NQVIDR--NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
L + ++ R NVG SGGE +R I +AV E+ + DE S LD+ A V
Sbjct: 131 LKMPEDLLTRSVNVG-FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
Query: 261 SLLRPNSYVIVVEHDLSVLDYLS-DFICCLY 290
SL I+V H +LDY+ D++ LY
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLY 220
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 36/211 (17%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI--LTYFRGSELQNYF-- 156
PG+V ++G NG GKST LAG+ D++ F+G +L
Sbjct: 44 HPGEVHAIMGPNGSGKSTLSATLAGR-----------EDYEVTGGTVEFKGKDLLALSPE 92
Query: 157 TRILEDNLKAIIKPQYVDHIP------------KAVQGNVGQ-VLDQKDERDMKADLCTD 203
R E A QY IP AV+ GQ LD+ D +D+ +
Sbjct: 93 DRAGEGIFMAF---QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 149
Query: 204 LDL-NQVIDR--NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
L + ++ R NVG SGGE +R I +AV E+ + DE S LD+ A V
Sbjct: 150 LKMPEDLLTRSVNVG-FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
Query: 261 SLLRPNSYVIVVEHDLSVLDYLS-DFICCLY 290
SL I+V H +LDY+ D++ LY
Sbjct: 209 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLY 239
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 21/209 (10%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G+ + VG +G GKST + ++ G+ D I + GS L+N + +D
Sbjct: 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQI--LIDGHNIKDFLTGS-LRNQIGLVQQD 423
Query: 163 NL--KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
N+ +K + P A V + + D +L D +V +R V LSGG
Sbjct: 424 NILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD-TEVGERGV-KLSGG 481
Query: 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280
+ QR +IA + + N I + DE +S LD++ Q +L + ++V H LS +
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESE-SIIQEALDVLSKDRTTLIVAHRLSTIT 540
Query: 281 YLSDFICC-------------LYGKPGAY 296
+ + L K GAY
Sbjct: 541 HADKIVVIENGHIVETGTHRELIAKQGAY 569
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
V LSGG+ QR+++ I ++DE ++ LD E + + + +L +T +V
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD--VLSKDRTTLIVA 533
Query: 526 HDFIMATYLADRVIVYEGQPSVDC 549
H T+ AD+++V E V+
Sbjct: 534 HRLSTITH-ADKIVVIENGHIVET 556
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 24/178 (13%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYK 418
GN LK + +++ + G G+GKT+ + ++ G L E S+ I VS+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-----EASEGIIKHSGRVSFC 104
Query: 419 PQKISPKFQSTVRHLLHQKIR-DSYTHP------QFVSDVMKPLLIEQ---LMDQEVVNL 468
Q S T++ + + + D Y + Q D+ K EQ ++ + V L
Sbjct: 105 SQ-FSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITK--FAEQDNTVLGEGGVTL 161
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
SGG+ R++L + K AD+YL+D P YLD +E+++ + V K L A KT +V
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK---LMANKTRILV 216
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 29/220 (13%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G++L + G+ G GK++ L ++ G+L+ + G I+ + + F+ I+
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEG----------IIKHSGRVSFCSQFSWIMPG 113
Query: 163 NLKA-IIKPQYVDH-----IPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGD 216
+K II+ D + KA Q + Q + + E+D N V+
Sbjct: 114 TIKENIIRGVSYDEYRYKSVVKACQ--LQQDITKFAEQD-----------NTVLGEGGVT 160
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGG+ R ++A ++A++Y+ D P YLDV + + L N I+V +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 277 SVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316
L + G YG + S+R + L G+
Sbjct: 221 EHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 24/178 (13%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYK 418
GN LK + +++ + G G+GKT+ + ++ G L E S+ I VS+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-----EASEGIIKHSGRVSFC 104
Query: 419 PQKISPKFQSTVRHLLHQKIR-DSYTHP------QFVSDVMKPLLIEQ---LMDQEVVNL 468
Q S T++ + + D Y + Q D+ K EQ ++ + V L
Sbjct: 105 SQ-FSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITK--FAEQDNTVLGEGGVTL 161
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
SGG+ R++L + K AD+YL+D P YLD +E+++ + V K L A KT +V
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK---LMANKTRILV 216
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 29/220 (13%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G++L + G+ G GK++ L ++ G+L+ + G I+ + + F+ I+
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEG----------IIKHSGRVSFCSQFSWIMPG 113
Query: 163 NLKA-IIKPQYVDH-----IPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGD 216
+K II D + KA Q + Q + + E+D N V+
Sbjct: 114 TIKENIISGVSYDEYRYKSVVKACQ--LQQDITKFAEQD-----------NTVLGEGGVT 160
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGG+ R ++A ++A++Y+ D P YLDV + + L N I+V +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 277 SVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316
L + G YG + S+R + L G+
Sbjct: 221 EHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 22/177 (12%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
GN LK + +++ + G G+GKT+ + ++ G L+ + VS+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE----GIIKHSGRVSFCS 105
Query: 420 QKISPKFQSTVR-HLLHQKIRDSYTHP------QFVSDVMKPLLIEQ---LMDQEVVNLS 469
Q S T++ +++ D Y + Q D+ K EQ ++ + V LS
Sbjct: 106 Q-FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITK--FAEQDNTVLGEGGVTLS 162
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
GG+ R++L + K AD+YL+D P YLD +E+++ + V K L A KT +V
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK---LMANKTRILV 216
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 25/218 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G++L + G+ G GK++ L ++ G+L+ + G I+ + + F+ I+
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEG----------IIKHSGRVSFCSQFSWIMPG 113
Query: 163 NLKA--IIKPQYVDHIPKAV--QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218
+K I Y ++ K+V + Q + + E+D N V+ LS
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD-----------NTVLGEGGVTLS 162
Query: 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV 278
GG+ R ++A ++A++Y+ D P YLDV + + L N I+V +
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 279 LDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316
L + G YG + S+R + L G+
Sbjct: 223 LRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 90/221 (40%), Gaps = 43/221 (19%)
Query: 87 YGPNTFKLHRLPVPR---------------PGQVLGLVGTNGIGKSTALKILAGKLKPNL 131
YG FK R P PGQ L LVG +G GKST + +L
Sbjct: 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE------- 1126
Query: 132 GRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIK-PQYVDHIPKAVQGNVGQVLD- 189
RF + + + GSE++ + + + P D ++ N+ LD
Sbjct: 1127 -RFYDTLGGE---IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC---SIAENIIYGLDP 1179
Query: 190 ------QKDERDMKADLCTDL-DLNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIY 238
Q +E A++ + +L + + VGD LSGG+ QR AIA V+N +I
Sbjct: 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239
Query: 239 MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279
+ DE +S LD + K Q R IV+ H L+ +
Sbjct: 1240 LLDEATSALDTESE-KVVQEALDRAREGRTCIVIAHRLNTV 1279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 214 VGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
VGD LSGG+ QR AIA V+N +I + DE +S LD + Q + + +
Sbjct: 548 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRT-T 606
Query: 270 IVVEHDLSVLDYLSDFICCLYGK 292
I++ H LS + I C G+
Sbjct: 607 IIIAHRLSTIRNADLIISCKNGQ 629
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 25/172 (14%)
Query: 375 QIIVMLGENGTGKTTFIRML-------AGLLKPDSVEDSDVEIPEF---NVSYKPQKISP 424
Q + ++G +G GK+T I +L G + D V+ D+ + EF NV+ Q+
Sbjct: 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL-EFLRKNVAVVSQE-PA 502
Query: 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMK----------PLLIEQLMDQEVVNLSGGELQ 474
F T+ + ++ T + V+ P L+ LSGG+ Q
Sbjct: 503 LFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
R+A+ L + I L+DE ++ LD+E + + + + +T ++ H
Sbjct: 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK--AAKGRTTIIIAH 611
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
LSGG+ QR+A+ L + I L+DE ++ LD+E V + + R +T V+ H
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR--AREGRTCIVIAH 1274
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
V+LSGG+ QRV++ L D+ L DEP++ LD E +++++ + KT VV
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ-LAEEGKTMVVVT 210
Query: 526 HDFIMATYLADRVIVY-------EGQPSVDCVANAPQS 556
H+ A +++ VI EG P + V PQS
Sbjct: 211 HEMGFARHVSSHVIFLHQGKIEEEGDP--EQVFGNPQS 246
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGG+ QR +IA ++ +FDEP+S LD + + ++++ L ++VV H++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 277 SVLDYLSDFICCLY 290
++S + L+
Sbjct: 214 GFARHVSSHVIFLH 227
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 22/177 (12%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
GN LK + +++ + G G+GKT+ + ++ G L+ + VS+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE----GIIKHSGRVSFCS 105
Query: 420 QKISPKFQSTVR-HLLHQKIRDSYTHP------QFVSDVMKPLLIEQ---LMDQEVVNLS 469
Q S T++ +++ D Y + Q D+ K EQ ++ + V LS
Sbjct: 106 Q-FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITK--FAEQDNTVLGEGGVTLS 162
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
GG+ R++L + K AD+YL+D P YLD +E+++ + V K L A KT +V
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK---LMANKTRILV 216
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 25/218 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G++L + G+ G GK++ L ++ G+L+ + G I+ + + F+ I+
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEASEG----------IIKHSGRVSFCSQFSWIMPG 113
Query: 163 NLKA--IIKPQYVDHIPKAV--QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218
+K I Y ++ K+V + Q + + E+D N V+ LS
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD-----------NTVLGEGGVTLS 162
Query: 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV 278
GG+ R ++A ++A++Y+ D P YLDV + + L N I+V +
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 279 LDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316
L + G YG + S+R + L G+
Sbjct: 223 LRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF 156
L VPR GQ++ L+G NG GK+T L +AG ++ G+ F G ++ N
Sbjct: 27 LKVPR-GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-----------IFNGQDITNKP 74
Query: 157 TRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-VLDQKDERDMKADLCTDLD----LNQVI 210
++ A++ P+ P+ V N+ ++KD+ +K DL L + +
Sbjct: 75 AHVINRXGIALV-PEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERL 133
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
+ G LSGGE Q AI ++ DEPS L + +V++ + + + ++
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 271 VVEHD 275
+VE +
Sbjct: 194 LVEQN 198
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVE------IPEFNVSYKPQ--K 421
QI+ ++G NG GKTT + +AGL++ D+ I ++ P+ +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 422 ISPK---FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVAL 478
I P+ +++ ++K ++ + P L E+L Q LSGGE Q +A+
Sbjct: 92 IFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQXLAI 150
Query: 479 CLCLGKPADIYLIDEPS 495
L + DEPS
Sbjct: 151 GRALXSRPKLLXXDEPS 167
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSEL----QNYF 156
+ G+ + ++G +G GKST L IL G + P + + + G E+ +
Sbjct: 28 KKGEFVSIIGASGSGKSTLLYIL--------GLLDAPTEGK---VFLEGKEVDYTNEKEL 76
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDR 212
+ + L + + Y+ A++ + +L +K+ ++ L ++L L + R
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMF-DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
+LSGGE QR AIA A+ N I +F DEP+ LD + + + + +++
Sbjct: 137 KPYELSGGEQQRVAIA-RALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195
Query: 272 VEHD 275
V H+
Sbjct: 196 VTHE 199
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L V +GEF + ++G +G+GK+T + +L GLL D+ + V + V Y +K
Sbjct: 25 LSVKKGEF-----VSIIGASGSGKSTLLYIL-GLL--DAPTEGKVFLEGKEVDYTNEKEL 76
Query: 424 PKFQSTVRHLLHQKIRDSYTHPQFVS--DVMKPLL----------------IEQL----- 460
++ + Q Y P+ + +V+ P+L + +L
Sbjct: 77 SLLRNRKLGFVFQ---FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK 133
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500
+ ++ LSGGE QRVA+ L + DEP+ LDS
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVE-----------DSDVEIPEFNVSYKPQK- 421
+I+ ++G +G GKTT +R LAG +PDS E ++++ + E + Y Q+
Sbjct: 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG 89
Query: 422 -ISPK---FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVA 477
+ P +++ L + K R + Q + +++ I +L + LSGG+ QR A
Sbjct: 90 VLFPHLTVYRNIAYGLGNGKGRTAQER-QRIEAMLELTGISELAGRYPHELSGGQQQRAA 148
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADR 537
L L ++ L+DEP + LD + R + + + K+A V HD A ADR
Sbjct: 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADR 208
Query: 538 VIVYE 542
+ V +
Sbjct: 209 IAVMK 213
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
PG++L ++G +G GK+T L+ LAG +P+ G + + + + L R+
Sbjct: 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS----LSGKTIFSKNTNLPVRERRLGY 84
Query: 162 DNLKAIIKPQYV--DHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219
+ ++ P +I + G+ ++ + +L ++++ R +LSG
Sbjct: 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT---GISELAGRYPHELSG 141
Query: 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS-YVIVVEHD 275
G+ QR A+A + E+ + DEP S LD + R + + + + LR N + V HD
Sbjct: 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 10/174 (5%)
Query: 362 FKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL-KPDSVEDSDVEIPEFNVSYKPQ 420
F L+ + E ++I+ LG NG+GKTT +R ++GLL ++ + +E+ + +
Sbjct: 19 FSLENINLEVNGEKVII-LGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYS 77
Query: 421 KISP---KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL-LIEQLMDQEVVNLSGGELQRV 476
P + TV +++ +++K L L E+++ +++ LS G+ V
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137
Query: 477 ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530
L L +I +DEP +D+ +R VI R+I K +V H+ M
Sbjct: 138 RTSLALASQPEIVGLDEPFENVDAARR----HVISRYIKEYGKEGILVTHELDM 187
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 90/199 (45%), Gaps = 20/199 (10%)
Query: 88 GPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147
G F L + + G+ + ++G NG GK+T L+ ++G L + F N + ++I Y
Sbjct: 15 GYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI 74
Query: 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN 207
R ++ L + + + + ++ + ++G LD RD+ ++ L L
Sbjct: 75 R-------YSTNLPEAYEIGVTVNDIVYLYEELKG-----LD----RDLFLEMLKALKLG 118
Query: 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+++ R + LS G+ ++ EI DEP +D +R ++ ++ +
Sbjct: 119 EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
Query: 267 SYVIVVEHDLSVLDYLSDF 285
I+V H+L +L+ ++
Sbjct: 179 ---ILVTHELDMLNLYKEY 194
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 40/219 (18%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYF---- 156
G V ++G NG GKST + ++ G LK + GR F N +T +EL +Y
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD-----ITNKEPAELYHYGIVRT 87
Query: 157 ---------TRILEDNLKAIIKPQ--------YVDHIPKAVQGNVGQVLDQKDERDMKAD 199
+LE+ L I P Y IPK ++ E+ K
Sbjct: 88 FQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE---------EEMVEKAFK-- 136
Query: 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
+ L L+ + DR G+LSGG+++ I + N ++ + DEP + + V
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 260 RSLLRPNSYVIVVEHDLS-VLDYLSDFICCLYGKPGAYG 297
L +++EH L VL+Y+ G+ A G
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 34/222 (15%)
Query: 354 TMVKTQGNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV 408
+VK G FK L V + +++G NG+GK+T I ++ G LK D E+ D+
Sbjct: 12 NIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Query: 409 ------EIPEFNVSYKPQKISPKFQSTV-RHLLHQKIR------DSYTHPQFVS------ 449
E+ + + Q P + TV +LL +I +S + +++
Sbjct: 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMV 131
Query: 450 ----DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505
+++ L + L D++ LSGG+++ V + L + ++DEP A + +
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG---L 188
Query: 506 AAKVIKRFI-LHAKKTAF-VVEHDF-IMATYLADRVIVYEGQ 544
A + + L AK F ++EH I+ Y+ +++ GQ
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYKPQKI 422
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +S+ Q
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSGRISFCSQ-F 107
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGG 471
S T++ + I SY ++ S V+K +E+ ++ + + LS G
Sbjct: 108 SWIMPGTIKENI---IGVSYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGITLSEG 163
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
+ +++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 164 QQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILV 215
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 34/214 (15%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ +
Sbjct: 59 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS---------- 102
Query: 152 LQNYFTRILEDNLKA-IIKPQYVDH----IPKAVQGNVGQVLDQKDERDMKADLCTDLDL 206
+ F+ I+ +K II Y ++ + KA Q + + + + E+D
Sbjct: 103 FCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQ--LEEDISKFAEKD----------- 149
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
N V+ LS G+ + ++A ++A++Y+ D P YLDV + + L N
Sbjct: 150 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 267 SYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
I+V + L + G YG +
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 243
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 31/188 (16%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYK 418
+F L + G T ++G +G+GK+T + +L L P S + +I + N +
Sbjct: 393 DFSLSIPSGSVT-----ALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWL 447
Query: 419 PQKISPKFQ--------------------STVRHLLHQKIRDSYTHPQFVSDVMKPLLIE 458
KI Q S+V Q++ + F+ + P
Sbjct: 448 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNF--PQGFN 505
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
++ ++ V LSGG+ QR+A+ L K I L+DE ++ LD+E + + + R L
Sbjct: 506 TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR--LMDG 563
Query: 519 KTAFVVEH 526
+T V+ H
Sbjct: 564 RTVLVIAH 571
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
N V+ LSGG+ QR AIA ++N +I + DE +S LD + + + L+
Sbjct: 504 FNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDG 563
Query: 266 NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
+ V+V+ H LS + + GK YG
Sbjct: 564 RT-VLVIAHHLSTIKNANMVAVLDQGKITEYG 594
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 36/180 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
LK + + Q++ + G G GKT+ + M+ G L+P S+ +I +IS
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKH------SGRIS 102
Query: 424 PKFQSTVRHLLHQKIRD------SYTHPQFVSDVMKPLLIEQ-----------LMDQEVV 466
F S ++ I++ SY ++ S V+K +E+ ++ + +
Sbjct: 103 --FCSQFSWIMPGTIKENIIFGVSYDEYRYRS-VIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
LS G+ +++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMANKTRILV 216
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 92 FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSE 151
FK+ R GQ+L + G+ G GK++ L ++ G+L+P+ G+ +
Sbjct: 59 FKIER------GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS---------- 102
Query: 152 LQNYFTRILEDNLKA--IIKPQYVDH----IPKAVQGNVGQVLDQKDERDMKADLCTDLD 205
+ F+ I+ +K I Y ++ + KA Q + + + + E+D
Sbjct: 103 FCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ--LEEDISKFAEKD---------- 150
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
N V+ LS G+ + ++A ++A++Y+ D P YLDV + + L
Sbjct: 151 -NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 266 NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
N I+V + L + G YG +
Sbjct: 210 NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 244
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 31/188 (16%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYK 418
+F L + G T ++G +G+GK+T + +L L P S + +I + N +
Sbjct: 362 DFSLSIPSGSVT-----ALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWL 416
Query: 419 PQKISPKFQ--------------------STVRHLLHQKIRDSYTHPQFVSDVMKPLLIE 458
KI Q S+V Q++ + F+ + P
Sbjct: 417 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNF--PQGFN 474
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
++ ++ V LSGG+ QR+A+ L K I L+DE ++ LD+E + + + R L
Sbjct: 475 TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR--LMDG 532
Query: 519 KTAFVVEH 526
+T V+ H
Sbjct: 533 RTVLVIAH 540
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
N V+ LSGG+ QR AIA ++N +I + DE +S LD + + + L+
Sbjct: 473 FNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDG 532
Query: 266 NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
+ V+V+ H LS + + GK YG
Sbjct: 533 RT-VLVIAHRLSTIKNANMVAVLDQGKITEYG 563
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 40/219 (18%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYF---- 156
G V ++G NG GKST + ++ G LK + GR F N +T +EL +Y
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD-----ITNKEPAELYHYGIVRT 87
Query: 157 ---------TRILEDNLKAIIKPQ--------YVDHIPKAVQGNVGQVLDQKDERDMKAD 199
+LE+ L I P Y IPK ++ E+ K
Sbjct: 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE---------EEMVEKAFK-- 136
Query: 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
+ L L+ + DR G+LSGG+++ I + N ++ + DEP + + V
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 260 RSLLRPNSYVIVVEHDLS-VLDYLSDFICCLYGKPGAYG 297
L +++EH L VL+Y+ G+ A G
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 34/222 (15%)
Query: 354 TMVKTQGNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV 408
+VK G FK L V + +++G NG+GK+T I ++ G LK D E+ D+
Sbjct: 12 NIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Query: 409 ------EIPEFNVSYKPQKISPKFQSTV-RHLLHQKI------RDSYTHPQFVS------ 449
E+ + + Q P + TV +LL +I +S + +++
Sbjct: 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV 131
Query: 450 ----DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505
+++ L + L D++ LSGG+++ V + L + ++DEP A + +
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG---L 188
Query: 506 AAKVIKRFI-LHAKKTAF-VVEHDF-IMATYLADRVIVYEGQ 544
A + + L AK F ++EH I+ Y+ +++ GQ
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 40/219 (18%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYF---- 156
G V ++G NG GKST + ++ G LK + GR F N +T +EL +Y
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD-----ITNKEPAELYHYGIVRT 87
Query: 157 ---------TRILEDNLKAIIKPQ--------YVDHIPKAVQGNVGQVLDQKDERDMKAD 199
+LE+ L I P Y IPK ++ E+ K
Sbjct: 88 FQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE---------EEMVEKAFK-- 136
Query: 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
+ L L+ + DR G+LSGG+++ I + N ++ + D+P + + V
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHV 196
Query: 260 RSLLRPNSYVIVVEHDLS-VLDYLSDFICCLYGKPGAYG 297
L +++EH L VL+Y+ G+ A G
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 34/222 (15%)
Query: 354 TMVKTQGNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV 408
+VK G FK L V + +++G NG+GK+T I ++ G LK D E+ D+
Sbjct: 12 NIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Query: 409 ------EIPEFNVSYKPQKISPKFQSTV-RHLLHQKIR------DSYTHPQFVS------ 449
E+ + + Q P + TV +LL +I +S + +++
Sbjct: 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMV 131
Query: 450 ----DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505
+++ L + L D++ LSGG+++ V + L + ++D+P A + +
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPG---L 188
Query: 506 AAKVIKRFI-LHAKKTAF-VVEHDF-IMATYLADRVIVYEGQ 544
A + + L AK F ++EH I+ Y+ +++ GQ
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTT----FIRML--AGLLKPDSVEDSDVEIPEF 413
GN L+ + + Q + +LG G+GK+T F+R+L G ++ D V + + ++
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW 92
Query: 414 NVSYK--PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD-VMKPLLIEQL---MDQEVVN 467
++ PQK+ F T R L S V+D V +IEQ +D +V+
Sbjct: 93 RKAFGVIPQKVF-IFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151
Query: 468 ----LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
LS G Q + L + A I L+DEPSA+LD V ++I+R + A
Sbjct: 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP----VTYQIIRRTLKQA 201
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 97/261 (37%), Gaps = 40/261 (15%)
Query: 81 KDTTHRY--GPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
KD T +Y G N + PGQ +GL+G G GKST L L +
Sbjct: 23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGV 82
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAI-IKPQYVDHIPKAVQGNVGQVLDQKDERDMK 197
W I LE KA + PQ V + N+ D+ K
Sbjct: 83 SWDSI---------------TLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWK 127
Query: 198 ADLCTDLDLNQVIDRNVGD-----------LSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
+ ++ L VI++ G LS G Q +A + A+I + DEPS++
Sbjct: 128 --VADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 247 LDVKQRLKAAQVVRSLLR---PNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPF 303
LD Q++R L+ + VI+ E + + F+ K Y + +
Sbjct: 186 LDP----VTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELY 241
Query: 304 SVREGINIFLAGFVPTENLRF 324
+ F+AGF+ + + F
Sbjct: 242 HYPA--DRFVAGFIGSPKMNF 260
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 217 LSGGELQRFAIAVVAVQ---NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
LSGGE QR +A + +Y+ DEP+ L + K +V+ L+ + VIV+E
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 274 HDLSVLDYLSDFICCL---YGKPGAYGVVT 300
H+L V+ +D I L GK G Y V T
Sbjct: 866 HNLDVIKN-ADHIIDLGPEGGKEGGYIVAT 894
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 184 VGQVLDQKDERDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIA--VVAVQNAEIYMF 240
VG++L + ++R + D+ L + + R+ LSGGE QR +A + + IY+
Sbjct: 434 VGELLKEIEKR---LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVL 490
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279
DEP+ L + + + ++ L + VIVVEHD V+
Sbjct: 491 DEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI 529
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 26/147 (17%)
Query: 431 RHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK--PADI 488
R ++ + +++ +F+ DV L + + LSGGE QR+ L +G I
Sbjct: 431 REIVGELLKEIEKRLEFLVDVGLEYLT---LSRSATTLSGGESQRIRLATQIGSGLTGVI 487
Query: 489 YLIDEPSAYL---DSEQRIVAAKVIKRFILHAKKTAFVVEHD---FIMATYLAD------ 536
Y++DEP+ L D+E+ I K ++ T VVEHD A ++ D
Sbjct: 488 YVLDEPTIGLHPRDTERLIKTLKKLRDL----GNTVIVVEHDEEVIRNADHIIDIGPGGG 543
Query: 537 ---RVIVYEGQPSVDCVANAPQSLLTG 560
+V++G +VD + P S LTG
Sbjct: 544 TNGGRVVFQG--TVDELLKNPDSSLTG 568
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGK---PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ Q LSGGE QR+ L L K +Y++DEP+ L E +V+ R +
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 518 KKTAFVVEHDF 528
T V+EH+
Sbjct: 859 -NTVIVIEHNL 868
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 46/200 (23%)
Query: 209 VIDRNVGDLSGGELQRFAIA--VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+ R+ G LSGGE QR +A + + +Y+ DEPS L + + ++S+
Sbjct: 497 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG 556
Query: 267 SYVIVVEHDLSVL---DYLSDFICCLYGKPGA---YGVVTLPFSVREGIN-------IFL 313
+ +IVVEHD + DYL D PGA G V + E +N +L
Sbjct: 557 NTLIVVEHDEDTMLAADYLIDI------GPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 610
Query: 314 AG--FVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEF 371
+G F+P R R + V + + + N +K+ G F
Sbjct: 611 SGKKFIPIPAERRRPDGRWLEVVGAREHNLK------------------NVSVKIPLGTF 652
Query: 372 TDSQIIVMLGENGTGKTTFI 391
+ + G +G+GK+T +
Sbjct: 653 -----VAVTGVSGSGKSTLV 667
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 217 LSGGELQRFAIAVVAVQNAE---IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
LSGGE QR +A + + +Y+ DEP++ L V + V+ L+ V+V+E
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 274 HDLSVL---DYLSDF 285
H+L V+ DY+ D
Sbjct: 906 HNLDVIKTADYIIDL 920
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 119/296 (40%), Gaps = 72/296 (24%)
Query: 289 LYGKPGA--YGVVTLPFS-VREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIE 345
LYG G Y T F VRE I G +P R+R+ S + E++E
Sbjct: 366 LYGSGGEPIYFRYTNDFGQVREQY-IAFEGVIPNVERRYRETSSDY--------IREQME 416
Query: 346 TY-ARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404
Y A PT QG ++LK + V++G G+ T + + L D +E
Sbjct: 417 KYMAEQPCPT---CQG-YRLK-------KESLAVLVGGKHIGEVTAMSVTEALAFFDGLE 465
Query: 405 DSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE 464
++ E + + L+ ++IRD F+ +V L + +
Sbjct: 466 LTEKE------------------AQIARLILREIRDRLG---FLQNVGLDYLT---LSRS 501
Query: 465 VVNLSGGELQRVALCLCLGK--PADIYLIDEPSAYL---DSEQRIVAAKVIKRFILHAKK 519
LSGGE QR+ L +G +Y++DEPS L D+++ I K ++
Sbjct: 502 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL----GN 557
Query: 520 TAFVVEHD---FIMATYLAD---------RVIVYEGQPSVDCVANAPQSLLTGMNL 563
T VVEHD + A YL D +V G P + V N P S LTG L
Sbjct: 558 TLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTP--EEVMNDPNS-LTGQYL 610
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ Q LSGGE QRV L L + ++ +Y++DEP+ L + V+ R + +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 518 KKTAFVVEHDF 528
T V+EH+
Sbjct: 899 -DTVLVIEHNL 908
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 210 IDRNVGDLSGGELQRFAIA--VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
+ R+ G LSGGE QR +A + + +Y+ DEPS L + + ++S+ +
Sbjct: 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 255
Query: 268 YVIVVEHDLSVL---DYLSDF 285
+IVVEHD + DYL D
Sbjct: 256 TLIVVEHDEDTMLAADYLIDI 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 217 LSGGELQRFAIAVVAVQNAE---IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
LSGGE QR +A + + +Y+ DEP++ L V + V+ L+ V+V+E
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 274 HDLSVL---DYLSDF 285
H+L V+ DY+ D
Sbjct: 604 HNLDVIKTADYIIDL 618
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 30/154 (19%)
Query: 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK-- 484
++ + L+ ++IRD F+ +V L + + LSGGE QR+ L +G
Sbjct: 168 EAQIARLILREIRDRLG---FLQNVGLDYLT---LSRSAGTLSGGEAQRIRLATQIGSRL 221
Query: 485 PADIYLIDEPSAYL---DSEQRIVAAKVIKRFILHAKKTAFVVEHD---FIMATYLAD-- 536
+Y++DEPS L D+++ I K ++ T VVEHD + A YL D
Sbjct: 222 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL----GNTLIVVEHDEDTMLAADYLIDIG 277
Query: 537 -------RVIVYEGQPSVDCVANAPQSLLTGMNL 563
+V G P + V N P S LTG L
Sbjct: 278 PGAGIHGGEVVAAGTP--EEVMNDPNS-LTGQYL 308
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ Q LSGGE QRV L L + ++ +Y++DEP+ L + V+ R + +
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 518 KKTAFVVEHDF 528
T V+EH+
Sbjct: 597 -DTVLVIEHNL 606
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 95/193 (49%), Gaps = 29/193 (15%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPD----SVEDSDVEIPEF-----NVSYKPQKISP 424
++ +LGE G+GK+T + ++ L+ P+ V++ DV + ++S PQ+ +
Sbjct: 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE-TV 427
Query: 425 KFQSTVRHLLHQKIRDSYTHPQFVSD----------VMKPLLIEQLMDQEVVNLSGGELQ 474
F T++ L R+ T + V + P + +++ N SGG+ Q
Sbjct: 428 LFSGTIKENLKWG-REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486
Query: 475 RVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMAT 532
R+++ L K + ++D+ ++ +D +E+RI+ +KR+ T F++ I
Sbjct: 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDG--LKRYTKGC--TTFIITQK-IPTA 541
Query: 533 YLADRVIV-YEGQ 544
LAD+++V +EG+
Sbjct: 542 LLADKILVLHEGK 554
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN-NPPDWQEI-LTYFRGS-----ELQ 153
+PG ++ ++G G GKST + ++ + P GR + D + + L RG +
Sbjct: 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET 426
Query: 154 NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRN 213
F+ +++NLK + D I +A + + Q+ D L D ++R
Sbjct: 427 VLFSGTIKENLKWGREDATDDEIVEAAK--IAQI------HDFIISLPEGYD--SRVERG 476
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
+ SGG+ QR +IA V+ ++ + D+ +S +D
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 217 LSGGELQRFAIAVVAVQNAE---IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
LSGGE QR +A + + +Y+ DEP++ L K V+ L+ + VIV+E
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 274 HDLSVLDYLSDFICCL 289
H+L V+ SD+I L
Sbjct: 924 HNLDVIK-TSDWIIDL 938
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQN--AEI 237
Q GQVL + R D+ L + + R LSGGE QR +A +
Sbjct: 488 QAIAGQVLKEIRSR---LGFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVL 544
Query: 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
Y+ DEPS L + + + + L + +IVVEHD +++ +D+I + G +G
Sbjct: 545 YVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEH-ADWIVDIGPGAGEHG 603
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 394 LAGLLKPDSVEDSDVEIPEFNVS-----YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448
LAG K + S E+ E +++ + P+ Q+ +L ++IR F+
Sbjct: 450 LAGESKGEHGAKSIAEVCELSIADCADFLNALTLGPREQAIAGQVL-KEIRSRLG---FL 505
Query: 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKP--ADIYLIDEPSAYLDSEQRIVA 506
DV L + + LSGGE QR+ L +G +Y++DEPS L
Sbjct: 506 LDVGLEYLS---LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRL 562
Query: 507 AKVIKRFILHAKKTAFVVEHD 527
+ + R + T VVEHD
Sbjct: 563 IETLTR-LRDLGNTLIVVEHD 582
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ Q LSGGE QRV L L K + +Y++DEP+ L + VI +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLV-DK 915
Query: 518 KKTAFVVEHDF 528
T V+EH+
Sbjct: 916 GNTVIVIEHNL 926
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 25/191 (13%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
PG+V LVG NG GKST +L +P G+ G L Y L
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGK-----------VLLDGEPLVQYDHHYLH 92
Query: 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI-------DRNV 214
+ A+ + + ++ + N+ L + + + + + I D V
Sbjct: 93 TQVAAVGQEPLL--FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 215 GD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV-RSLLRPNSYV 269
G+ LSGG+ Q A+A ++ + + D+ +S LD +L+ +++ S + V
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTV 210
Query: 270 IVVEHDLSVLD 280
+++ H LS+ +
Sbjct: 211 LLITHQLSLAE 221
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYKPQKISPKFQSTVR 431
++ ++G NG+GK+T +L L +P V + +++ Y +++ Q +
Sbjct: 45 GKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL- 103
Query: 432 HLLHQKIRDSYTHPQFVSDVMKPLL--------------IEQLMDQEVV----NLSGGEL 473
L + R++ + + M+ + Q D EV LSGG+
Sbjct: 104 -LFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQR 162
Query: 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533
Q VAL L + + ++D+ ++ LD+ ++ +++ A +T ++ H +A
Sbjct: 163 QAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAER 222
Query: 534 LADRVIVYEG 543
+ + EG
Sbjct: 223 AHHILFLKEG 232
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 217 LSGGELQRFAIAVVAVQNAE---IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
LSGGE QR +A + + +Y+ DEP++ L V + V+ L+ V+V+E
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 274 HDLSVL---DYLSDF 285
H+L V+ DY+ D
Sbjct: 906 HNLDVIKTADYIIDL 920
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 209 VIDRNVGDLSGGELQRFAIA--VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+ R+ G LSGGE QR +A + + +Y+ DEPS L + + ++S
Sbjct: 497 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLG 556
Query: 267 SYVIVVEHDLSVL---DYLSDF 285
+ +IVVEHD DYL D
Sbjct: 557 NTLIVVEHDEDTXLAADYLIDI 578
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 30/154 (19%)
Query: 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK-- 484
++ + L+ ++IRD F+ +V L + + LSGGE QR+ L +G
Sbjct: 470 EAQIARLILREIRDRLG---FLQNVGLDYLT---LSRSAGTLSGGEAQRIRLATQIGSRL 523
Query: 485 PADIYLIDEPSAYL---DSEQRIVAAKVIKRFILHAKKTAFVVEHD---FIMATYLAD-- 536
+Y++DEPS L D+++ I K + T VVEHD + A YL D
Sbjct: 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSXRDL----GNTLIVVEHDEDTXLAADYLIDIG 579
Query: 537 -------RVIVYEGQPSVDCVANAPQSLLTGMNL 563
+V G P + V N P S LTG L
Sbjct: 580 PGAGIHGGEVVAAGTP--EEVXNDPNS-LTGQYL 610
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ Q LSGGE QRV L L + ++ +Y++DEP+ L + V+ R + +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 518 KKTAFVVEHDF 528
T V+EH+
Sbjct: 899 -DTVLVIEHNL 908
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 88 GPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147
G K L VP+ G+V L+G NG GKST KILAG + + R D + IL
Sbjct: 15 GETILKGVNLVVPK-GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV-LDQKDERDMK-ADLCTD-- 203
+ + QY +P N ++ L K R++ A+ T
Sbjct: 74 PDERARKGL----------FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVK 123
Query: 204 -----LDLNQ-VIDRNVGD-LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256
LD ++ + R + + SGGE +R I + V + DE S LD+ A
Sbjct: 124 KALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA 183
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYL 282
+ V ++ PN +V+ H +L+Y+
Sbjct: 184 RGVNAMRGPNFGALVITHYQRILNYI 209
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 127 LKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN-LKAIIKPQYVDHIPKAVQGNVG 185
LK L +N +E LT F E + RI N +A ++ +YV I K +
Sbjct: 193 LKARLKEMSNLEKEKEKLTKF--VEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLN---- 246
Query: 186 QVLDQKDERDMKADLCTDLDL-----NQVIDRNVGDLSGGELQRFAIAV-VAVQNA---- 235
+ + D +L D ++ N V+ + +LSGGE A+++ +A+ NA
Sbjct: 247 EAFSEFDLPYSFVELTKDFEVRVHAPNGVL--TIDNLSGGEQIAVALSLRLAIANALIGN 304
Query: 236 --EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
E + DEP+ YLD +R K A++ R + +I+ H
Sbjct: 305 RVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH 345
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 467 NLSGGELQRVALCLCL-------GKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
NLSGGE VAL L L G + ++DEP+ YLD +R A++ ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 123 LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT-RILEDNLKAIIKPQYVDHIPKAVQ 181
L KLK +NN ++ L F S YFT R+LE LK Y+D +
Sbjct: 200 LEKKLKEXSDEYNNLDLLRKYL--FDKSNFSRYFTGRVLEAVLKRT--KAYLD-----IL 250
Query: 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV------VAVQNA 235
N +D DE+ + D I+R LSGGE +I++ VA
Sbjct: 251 TNGRFDIDFDDEKG--GFIIKDWG----IERPARGLSGGERALISISLAXSLAEVASGRL 304
Query: 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275
+ + DE S LD + + K A V++ L R N ++ + HD
Sbjct: 305 DAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 211 DRNVGDLSGGE------LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+R + LSGGE R A+++ + + DEP+ YLD ++R K ++ L+
Sbjct: 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 111
Query: 265 PNSYVIVVEHDLSVLD 280
VI+V HD + D
Sbjct: 112 KIPQVILVSHDEELKD 127
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 468 LSGGE------LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
LSGGE R+A+ L L + ++DEP+ YLD E+R +++R+ L
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQV 116
Query: 522 FVVEHD 527
+V HD
Sbjct: 117 ILVSHD 122
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 24/169 (14%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
PG+V LVG NG GKST +L +P G+ G L Y L
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGK-----------VLLDGEPLVQYDHHYLH 92
Query: 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI-------DRNV 214
+ A+ + + ++ + N+ L + + + + + I D V
Sbjct: 93 TQVAAVGQEPLL--FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 215 GD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
G+ LSGG+ Q A+A ++ + + D +S LD +L+ +++
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 25/199 (12%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-FNNPPDWQEILTYFRGSELQNYFTRI 159
+PGQ + LVG G GK+T + +L + G+ + D ++I + S L++ +
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI----KRSSLRSSIGIV 434
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLD---------LNQVI 210
L+D I+ V K GN G DE +A T D V+
Sbjct: 435 LQD---TILFSTTVKENLK--YGNPGAT----DEEIKEAAKLTHSDHFIKHLPEGYETVL 485
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
N DLS G+ Q AI + N +I + DE +S +D K K+ Q L I
Sbjct: 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE-KSIQAAMWKLMEGKTSI 544
Query: 271 VVEHDLSVLDYLSDFICCL 289
++ H L+ + +D I L
Sbjct: 545 IIAHRLNTIKN-ADLIIVL 562
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 123 LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT-RILEDNLKAIIKPQYVDHIPKAVQ 181
L KLK +NN ++ L F S YFT R+LE LK Y+D +
Sbjct: 200 LEKKLKEMSDEYNNLDLLRKYL--FDKSNFSRYFTGRVLEAVLKRT--KAYLD-----IL 250
Query: 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV------VAVQNA 235
N +D DE+ + D I+R LSGGE +I++ VA
Sbjct: 251 TNGRFDIDFDDEKG--GFIIKDWG----IERPARGLSGGERALISISLAMSLAEVASGRL 304
Query: 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275
+ + DE S LD + + K A V++ L R N ++ + HD
Sbjct: 305 DAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 23/163 (14%)
Query: 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYK 418
QG LK + + ++ G NG GKTT + +L S + V Y
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYS 91
Query: 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFV-SDVMKPLLIEQLMDQEVVN---------- 467
+ + V H L +K ++ V S K + + Q +D E+ N
Sbjct: 92 AETVRQHI-GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG 150
Query: 468 -----------LSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499
LS GE QRV + L + ++DEP+A LD
Sbjct: 151 XSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 211 DRNVGDLSGGE------LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+R + LSGGE R A+++ + + DEP+ YLD ++R K ++ L+
Sbjct: 78 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 137
Query: 265 PNSYVIVVEHDLSVLD 280
VI+V HD + D
Sbjct: 138 KIPQVILVSHDEELKD 153
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 468 LSGGE------LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
LSGGE R+A+ L L + ++DEP+ YLD E+R +++R+ L
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQV 142
Query: 522 FVVEHD 527
+V HD
Sbjct: 143 ILVSHD 148
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 211 DRNVGDLSGGE------LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+R + LSGGE R A+++ + + DEP+ YLD ++R K ++ L+
Sbjct: 83 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 142
Query: 265 PNSYVIVVEHDLSVLD 280
VI+V HD + D
Sbjct: 143 KIPQVILVSHDEELKD 158
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 468 LSGGE------LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
LSGGE R+A+ L L + ++DEP+ YLD E+R +++R+ L
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQV 147
Query: 522 FVVEHD 527
+V HD
Sbjct: 148 ILVSHD 153
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280
R A+++ + + DEP+ YLD ++R K ++ L+ VI+V HD + D
Sbjct: 67 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 123
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
R+A+ L L + ++DEP+ YLD E+R +++R+ L +V HD
Sbjct: 67 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQVILVSHD 118
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 217 LSGGE------LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
LSGGE R A+++ + + DEP+ YLD ++R K ++ L+ VI
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 271 VVEHDLSVLD 280
+V HD + D
Sbjct: 329 LVSHDEELKD 338
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 468 LSGGE------LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
LSGGE R+A+ L L + ++DEP+ YLD E+R +++R+ L
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQV 327
Query: 522 FVVEHD 527
+V HD
Sbjct: 328 ILVSHD 333
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 217 LSGGE------LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
LSGGE R A+++ + + DEP+ YLD ++R K ++ L+ VI
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 271 VVEHDLSVLD 280
+V HD + D
Sbjct: 309 LVSHDEELKD 318
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 468 LSGGE------LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
LSGGE R+A+ L L + ++DEP+ YLD E+R +++R+ L
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQV 307
Query: 522 FVVEHD 527
+V HD
Sbjct: 308 ILVSHD 313
>pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 468 LSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
+SGGE AL KPA YL DE A+LD A +IK +K++ F+
Sbjct: 64 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKE---SSKESQFI 120
Query: 524 V--EHDFIMATYLADRVI 539
V D +MA AD++I
Sbjct: 121 VITLRDVMMAN--ADKII 136
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 212 RNVGDLSGGELQRFAIAVV-AVQN---AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
+ + +SGGE A+A V A+Q A Y+FDE ++LD + A +++ + +
Sbjct: 59 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQ 118
Query: 268 YVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTL 301
++++ D+ + + +D I + + G VV+L
Sbjct: 119 FIVITLRDVMMAN--ADKIIGVSMRDGVSKVVSL 150
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 38 CIEVTPAAKIA------FISEELCIGCGICVKKCPFEAI 70
C+EV P I +I E CI CG CV CP AI
Sbjct: 16 CVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAI 54
>pdb|1XEX|B Chain B, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 468 LSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
+SGGE AL KPA YL D+ A+LD A +IK +K++ F+
Sbjct: 64 MSGGEKALTALAFVFAIQKFKPAPFYLFDQIDAHLDDANVKRVADLIKE---SSKESQFI 120
Query: 524 V--EHDFIMATYLADRVI 539
V D +MA AD++I
Sbjct: 121 VITLRDVMMAN--ADKII 136
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 212 RNVGDLSGGELQRFAIAVV-AVQN---AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
+ + +SGGE A+A V A+Q A Y+FD+ ++LD + A +++ + +
Sbjct: 59 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDQIDAHLDDANVKRVADLIKESSKESQ 118
Query: 268 YVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTL 301
++++ D+ + + +D I + + G VV+L
Sbjct: 119 FIVITLRDVMMAN--ADKIIGVSMRDGVSKVVSL 150
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 25 CKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTT 84
C K+CP G + + A I E CIGCG C+ CPF N+P+ L+K+
Sbjct: 108 CLKACP--SAGAI---IQYANGIVDFQSENCIGCGYCIAGCPF------NIPR-LNKEDN 155
Query: 85 HRY 87
Y
Sbjct: 156 RVY 158
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLH 435
++ LG++G GKTTF+ R P + ++ E V Y Q P S +H
Sbjct: 28 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ--GPNGSSGKAFKVH 85
Query: 436 QKIRDSYTHPQFVS-------DVMKPLLIEQLMDQE-VVNLSG--GELQRVALC-----L 480
++ D+ +F S D M LL+ L Q+ +N+ +LQ A C +
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 481 CLGKPADI 488
+G AD+
Sbjct: 146 LIGNKADL 153
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 354
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 218 SGGELQRFAIAVV-AVQN---AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
SGGE A+A V A+Q A Y+FDE ++LD + A +++ + + ++++
Sbjct: 247 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 306
Query: 274 HDLSVLDYLSDFICCLYGKPGAYGVVTL 301
D+ + +D I + + G VV+L
Sbjct: 307 RDVXXAN--ADKIIGVSXRDGVSKVVSL 332
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 469 SGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
SGGE AL KPA YL DE A+LD A +IK +K++ F+V
Sbjct: 247 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKE---SSKESQFIV 303
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 24/169 (14%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
PG+V LVG NG GKST +L +P G+ G L Y L
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGK-----------VLLDGEPLVQYDHHYLH 92
Query: 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI-------DRNV 214
+ A+ + + ++ + N+ L + + + + + I D V
Sbjct: 93 TQVAAVGQEPLL--FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 215 GD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
G+ L+ G+ Q A+A ++ + + D +S LD +L+ +++
Sbjct: 151 GETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV CI P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CIYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
Model At 1.8 Angstroms Resolution
Length = 55
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDT 83
A++ E CI CG C +CP +AI +D DT
Sbjct: 1 AYVINEACISCGACEPECPVDAISQGGSRYVIDADT 36
>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
Azotobacter Vinelandii At 1.7 Angstrom Resolution
Length = 106
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ EC + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTECVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
Bacillus Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
Bacillus Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFE 68
A V ++ C KC C + CPV CI +I ++CI CG C CP
Sbjct: 1 AYVITEPCIGTKC-ASCVEVCPVD-----CIH--EGEDQYYIDPDVCIDCGACEAVCPVS 52
Query: 69 AI 70
AI
Sbjct: 53 AI 54
>pdb|3KTA|B Chain B, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|D Chain D, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 173
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 218 SGGELQRFAIAVV-AVQN---AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
SGGE A+A V A+Q A Y+FDE ++LD + A +++ + + ++++
Sbjct: 66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125
Query: 274 HDLSVLDYLSDFICCLYGKPGAYGVVTL 301
D+ + +D I + + G VV+L
Sbjct: 126 RDVXXAN--ADKIIGVSXRDGVSKVVSL 151
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 469 SGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
SGGE AL KPA YL DE A+LD A +IK +K++ F+V
Sbjct: 66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKE---SSKESQFIV 122
>pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
Length = 195
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 17 KPKKCRQECKKSC-PVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEA 69
+P++C C PV TG + + + CI CG C+ CP++A
Sbjct: 54 RPEQCLHCENPPCVPVCPTGA---SYQTKDGLVLVDPKKCIACGACIAACPYDA 104
>pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin
From Clostridium Acidurici At 1.84 Angstroms Resolution
pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
Length = 55
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDT 83
A++ E CI CG C +CP AI + +D DT
Sbjct: 1 AYVINEACISCGACEPECPVNAISSGDDRYVIDADT 36
>pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCAPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
Structures
Length = 77
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 38 CIEVTPAAKIA------FISEELCIGCGICVKKCPFEAI 70
C+EV P I +I ++CI CG C CP AI
Sbjct: 16 CVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAI 54
>pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
Average Structure
Length = 77
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 38 CIEVTPAAKIA------FISEELCIGCGICVKKCPFEAI 70
C+EV P I +I ++CI CG C CP AI
Sbjct: 16 CVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAI 54
>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
Length = 106
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEECPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRC-KPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C K K C +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCIKCKYC--DCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
Length = 106
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCESECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 11/153 (7%)
Query: 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
++ V D K C C + CP T + E+ I I E CI CG C+ CP
Sbjct: 24 KLHFVQIDEAKCIGC-DTCSQYCP---TAAIFGEMGEPHSIPHI--EACINCGQCLTHCP 77
Query: 67 FEAI-QIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAG 125
AI + + +++K + K +P P LG +G T K+LA
Sbjct: 78 ENAIYEAQSWVPEVEK----KLKDGKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAA 133
Query: 126 KLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158
K + ++ + GSE T+
Sbjct: 134 LQKLGFAHCWDTEFTADVTIWEEGSEFVERLTK 166
>pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDSCIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|2V2K|A Chain A, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
Mycobacterium Smegmatis
pdb|2V2K|B Chain B, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
Mycobacterium Smegmatis
Length = 105
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 17 KPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70
K K C +EC C + A++ +I + C+ G C CP EAI
Sbjct: 12 KDKACIEECPVDC-----------IYEGARMLYIHPDECVDXGACEPVCPVEAI 54
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 83 TTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132
TTH+ P L +L R +VL +VG GKST + L GK ++G
Sbjct: 80 TTHKGEPRKVLLKKLSFDRLARVL-IVGVPNTGKSTIINKLKGKRASSVG 128
>pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVN-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 55 CIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPV 99
C+GCG C CP + ++ P D +D PN R+PV
Sbjct: 744 CMGCGNCADICPPKEKALVMQPLDTQRDAQV---PNLEYAARIPV 785
>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKXTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
Vinelandii At 2.3 Angstroms Resolution
pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
Temperature, 1.35 A
pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5,
100 K, 1.35 A
pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na
Dithionite Reduced, Ph 8.5, 1.4a Resolution, 100 K
pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
Dithionite Reduced At Ph 8.5, Resolution 1.4 A
Length = 106
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 47
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 49
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 40
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 9 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 43
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEIPE--FNVSYKPQKISPKFQSTVRHL 433
+V++G+ GTGKTTF+ R L G + V VE+ F+ + P K + T
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN--VWDTAGQE 70
Query: 434 LHQKIRDSY 442
+ +RD Y
Sbjct: 71 KYGGLRDGY 79
>pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxidized Photosystem
I Subunit Psac, Containing [4fe-4s] Clusters Fa And Fb
Length = 80
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 53 ELCIGCGICVKKCPFEAIQII 73
+ CIGC CV+ CP + ++++
Sbjct: 8 DTCIGCTQCVRACPLDVLEMV 28
>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
Length = 106
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTKCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 47
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 25 CKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEA 69
CK CPV CI+ I I + CI CG C CP A
Sbjct: 14 CKPECPVN-----CIQ---EGSIYAIDADSCIDCGSCASVCPVGA 50
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQ 71
A++ + CI CG C +CP IQ
Sbjct: 1 AYVINDSCIACGACKPECPVNCIQ 24
>pdb|2WSC|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSE|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSF|C Chain C, Improved Model Of Plant Photosystem I
pdb|3LW5|C Chain C, Improved Model Of Plant Photosystem I
Length = 81
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 53 ELCIGCGICVKKCPFEAIQII 73
+ CIGC CV+ CP + +++I
Sbjct: 9 DTCIGCTQCVRACPTDVLEMI 29
>pdb|2O01|C Chain C, The Structure Of A Plant Photosystem I Supercomplex At
3.4 Angstrom Resolution
Length = 80
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 53 ELCIGCGICVKKCPFEAIQII 73
+ CIGC CV+ CP + +++I
Sbjct: 8 DTCIGCTQCVRACPTDVLEMI 28
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 52
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 47
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 47
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEV 47
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 47
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 377 IVMLGENGTGKTTFIRMLAGLL-KPDSVEDSDVEIPEFNVSYKP 419
+++ G+ GTGK+T +R LA LL + ++VE V P NV P
Sbjct: 48 VLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP--NVEMIP 89
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI 410
+V++GE G GK+T + AG+ DS+ DSD E+
Sbjct: 9 VVLIGEQGVGKSTLANIFAGV--HDSM-DSDCEV 39
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI 410
+V++GE G GK+T + AG+ DS+ DSD E+
Sbjct: 40 VVLIGEQGVGKSTLANIFAGV--HDSM-DSDCEV 70
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 47
>pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AYVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + + VE+
Sbjct: 7 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV 41
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + + VE+
Sbjct: 8 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV 42
>pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
Facilitates Proton Transfer To The Reduced [3fe-4s]
Cluster
Length = 106
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTNCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
Complex Combining Nmr And Soft-Docking
pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
Cytochrome C3 And [fe]-Hydrogenase
Length = 371
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 25 CKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI-QIINLPKDLDKDT 83
C + CP T + E+ I I E CI CG C+ CP AI + + +++K
Sbjct: 15 CSQYCP---TAAIFGEMGEPHSIPHI--EACINCGQCLTHCPENAIYEAQSWVPEVEK-- 67
Query: 84 THRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143
+ K +P P LG +G T K+LA K + ++
Sbjct: 68 --KLKDGKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADV 125
Query: 144 LTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIP 177
+ GSE T+ + L PQ+ P
Sbjct: 126 TIWEEGSEFVERLTKKSDMPL-----PQFTSCCP 154
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + V VE+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEV 47
>pdb|3URG|A Chain A, The Crystal Structure Of Anabaena Ccbp
Length = 146
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 566 SHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLDD 605
SH+ R + R + +D++++A G YYYLDD
Sbjct: 19 SHMASVERDETREHRIETEIIVDAEDKEERAMGWYYYLDD 58
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI 410
+V++GE G GK+T + AG+ DS+ DSD E+
Sbjct: 9 VVLIGEQGVGKSTLANIFAGV--HDSM-DSDXEV 39
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI 410
+V++GE G GK+T + AG+ DS+ DSD E+
Sbjct: 9 VVLIGEQGVGKSTLANIFAGV--HDSM-DSDXEV 39
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 377 IVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEI 410
+V++G+ GTGKTTF+ R L G + + VE+
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV 49
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 47 IAFISEELCIGCGICVKKC---PFEAIQ 71
+A I EE+CI CG C C ++AIQ
Sbjct: 945 VAVIDEEMCINCGKCYMTCNDSGYQAIQ 972
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 47 IAFISEELCIGCGICVKKC---PFEAIQ 71
+A I EE+CI CG C C ++AIQ
Sbjct: 945 VAVIDEEMCINCGKCYMTCNDSGYQAIQ 972
>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CHYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C +C +CP
Sbjct: 1 AHVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
Length = 106
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 38 CIEVTP------AAKIAFISEELCIGCGICVKKCPFEAI 70
C+EV+P I + CI C +C +CP +AI
Sbjct: 16 CVEVSPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAI 54
>pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
Length = 106
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV C P I + CI C C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCASCEPECPA 51
Query: 68 EAI 70
+AI
Sbjct: 52 QAI 54
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 73 INLPKDLDKDTTHRYG-PNTFKLHRLPVPRPGQVLGLVGTNGI 114
+ LP+ + H YG P + ++P+P PGQVL + +G+
Sbjct: 1 MTLPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGV 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,098,532
Number of Sequences: 62578
Number of extensions: 793968
Number of successful extensions: 2863
Number of sequences better than 100.0: 193
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2328
Number of HSP's gapped (non-prelim): 446
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)