Query 040300
Match_columns 605
No_of_seqs 588 out of 3749
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1245 Predicted ATPase, RNas 100.0 4E-181 8E-186 1391.7 44.1 591 4-603 1-591 (591)
2 KOG0063 RNAse L inhibitor, ABC 100.0 7E-151 2E-155 1156.5 33.5 592 1-603 1-592 (592)
3 PRK13409 putative ATPase RIL; 100.0 9E-147 2E-151 1234.7 56.0 590 5-604 1-590 (590)
4 COG1123 ATPase components of v 100.0 7.1E-73 1.5E-77 611.4 39.9 459 69-561 5-521 (539)
5 PRK09700 D-allose transporter 100.0 9.9E-72 2.1E-76 621.6 40.7 441 69-546 5-487 (510)
6 PRK13549 xylose transporter AT 100.0 1.2E-71 2.6E-76 620.2 39.8 449 69-557 5-492 (506)
7 PRK15439 autoinducer 2 ABC tra 100.0 1.5E-71 3.2E-76 619.7 40.3 449 69-558 11-491 (510)
8 PRK10762 D-ribose transporter 100.0 4.8E-71 1E-75 614.7 42.7 443 69-557 4-482 (501)
9 PRK10261 glutathione transport 100.0 4.6E-71 1E-75 628.4 42.3 468 69-560 12-554 (623)
10 TIGR03269 met_CoM_red_A2 methy 100.0 4.8E-71 1E-75 617.5 41.6 453 82-559 5-517 (520)
11 PRK15134 microcin C ABC transp 100.0 5.8E-71 1.3E-75 617.9 41.3 452 69-560 5-516 (529)
12 PRK11288 araG L-arabinose tran 100.0 1.5E-70 3.3E-75 610.7 39.4 445 69-558 4-484 (501)
13 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-70 7.1E-75 608.1 40.3 434 83-546 7-481 (500)
14 PRK10938 putative molybdenum t 100.0 2.4E-70 5.3E-75 607.7 38.0 446 69-546 3-481 (490)
15 PRK10982 galactose/methyl gala 100.0 9.4E-70 2E-74 603.0 39.5 433 81-546 2-469 (491)
16 COG0488 Uup ATPase components 100.0 3.1E-69 6.8E-74 593.2 37.3 439 82-543 8-511 (530)
17 PRK10636 putative ABC transpor 100.0 7.2E-69 1.6E-73 611.1 38.5 452 83-558 7-516 (638)
18 PRK15064 ABC transporter ATP-b 100.0 1.6E-67 3.4E-72 590.3 41.8 454 83-559 7-525 (530)
19 PRK11819 putative ABC transpor 100.0 3.2E-67 6.8E-72 590.5 42.7 462 69-560 6-534 (556)
20 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-66 2.7E-71 585.4 42.3 461 69-559 4-531 (552)
21 PRK11147 ABC transporter ATPas 100.0 1.3E-66 2.8E-71 593.5 42.1 459 69-557 3-526 (635)
22 PLN03073 ABC transporter F fam 100.0 1.6E-65 3.5E-70 586.4 42.6 454 82-556 182-711 (718)
23 COG1129 MglA ABC-type sugar tr 100.0 6.3E-65 1.4E-69 546.4 38.1 433 81-546 12-479 (500)
24 COG4172 ABC-type uncharacteriz 100.0 7.2E-65 1.6E-69 520.1 35.7 453 68-561 5-518 (534)
25 COG3845 ABC-type uncharacteriz 100.0 1.4E-59 3.1E-64 495.2 34.7 440 69-546 4-481 (501)
26 KOG0927 Predicted transporter 100.0 7.8E-57 1.7E-61 475.9 29.1 444 69-545 75-583 (614)
27 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.2E-57 1.3E-61 456.5 23.7 246 350-598 1-246 (246)
28 KOG0062 ATPase component of AB 100.0 1.9E-56 4E-61 470.8 25.2 421 83-546 86-557 (582)
29 TIGR01257 rim_protein retinal- 100.0 1.5E-53 3.2E-58 520.0 44.2 188 370-560 1961-2160(2272)
30 KOG0055 Multidrug/pheromone ex 100.0 1.1E-52 2.4E-57 483.2 33.5 199 349-560 994-1214(1228)
31 PTZ00265 multidrug resistance 100.0 5.3E-52 1.2E-56 505.8 40.0 201 349-559 1172-1452(1466)
32 PLN03232 ABC transporter C fam 100.0 1.2E-50 2.5E-55 497.7 40.0 199 349-561 1241-1460(1495)
33 PLN03130 ABC transporter C fam 100.0 3.5E-50 7.6E-55 494.1 40.9 198 349-560 1244-1462(1622)
34 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-50 3.3E-55 492.4 37.4 185 368-555 783-989 (1394)
35 TIGR00957 MRP_assoc_pro multi 100.0 6.4E-50 1.4E-54 491.8 40.3 198 349-560 1291-1509(1522)
36 PTZ00243 ABC transporter; Prov 100.0 4.2E-49 9E-54 483.9 42.3 198 349-560 1315-1534(1560)
37 KOG0066 eIF2-interacting prote 100.0 7.8E-51 1.7E-55 418.4 19.1 335 193-545 388-778 (807)
38 PLN03140 ABC transporter G fam 100.0 8.6E-49 1.9E-53 475.9 34.4 175 367-542 899-1094(1470)
39 TIGR01271 CFTR_protein cystic 100.0 4.5E-47 9.8E-52 465.5 39.0 181 370-560 1241-1441(1490)
40 COG1120 FepC ABC-type cobalami 100.0 2.3E-47 4.9E-52 382.0 22.8 231 349-587 9-257 (258)
41 COG1126 GlnQ ABC-type polar am 100.0 4.9E-46 1.1E-50 356.1 19.7 204 349-561 9-227 (240)
42 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-45 2.3E-50 368.1 21.6 204 349-562 11-230 (254)
43 COG1116 TauB ABC-type nitrate/ 100.0 3.1E-44 6.7E-49 353.2 20.9 192 349-546 10-209 (248)
44 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.9E-44 1.1E-48 363.9 22.9 254 78-331 1-254 (255)
45 PRK00349 uvrA excinuclease ABC 100.0 1.3E-42 2.7E-47 403.7 34.5 336 195-560 468-928 (943)
46 PRK00635 excinuclease ABC subu 100.0 4E-42 8.6E-47 414.1 33.3 335 200-561 459-908 (1809)
47 COG1126 GlnQ ABC-type polar am 100.0 5.2E-43 1.1E-47 335.3 20.3 203 69-292 2-212 (240)
48 COG1125 OpuBA ABC-type proline 100.0 2.7E-43 5.9E-48 343.6 16.8 210 349-566 8-233 (309)
49 KOG0054 Multidrug resistance-a 100.0 2.7E-41 5.9E-46 397.6 35.8 194 356-563 1153-1366(1381)
50 TIGR00630 uvra excinuclease AB 100.0 3.4E-41 7.5E-46 391.1 32.1 334 199-557 469-923 (924)
51 COG3839 MalK ABC-type sugar tr 100.0 4.3E-42 9.4E-47 356.3 20.9 210 349-566 10-231 (338)
52 COG1135 AbcC ABC-type metal io 100.0 1.9E-41 4.2E-46 339.8 20.0 198 357-561 20-233 (339)
53 COG1118 CysA ABC-type sulfate/ 100.0 1.2E-41 2.7E-46 340.4 18.4 206 349-562 9-230 (345)
54 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-41 2.7E-46 339.0 17.6 205 69-298 4-221 (254)
55 COG1122 CbiO ABC-type cobalt t 100.0 4.3E-41 9.3E-46 336.0 20.8 206 349-561 10-230 (235)
56 COG1136 SalX ABC-type antimicr 100.0 8.7E-41 1.9E-45 328.4 21.7 183 357-545 19-219 (226)
57 COG3842 PotA ABC-type spermidi 100.0 2.5E-41 5.4E-46 352.4 18.7 205 349-561 12-228 (352)
58 COG1127 Ttg2A ABC-type transpo 100.0 5.8E-41 1.3E-45 325.9 18.7 210 349-566 15-242 (263)
59 COG1124 DppF ABC-type dipeptid 100.0 1.5E-40 3.3E-45 324.4 20.3 205 349-560 10-232 (252)
60 COG1120 FepC ABC-type cobalami 100.0 1.2E-40 2.6E-45 333.5 18.8 196 82-291 7-214 (258)
61 COG3638 ABC-type phosphate/pho 100.0 1.9E-40 4E-45 321.6 18.6 205 349-560 10-238 (258)
62 COG1131 CcmA ABC-type multidru 100.0 2E-39 4.4E-44 336.2 23.6 205 349-560 11-227 (293)
63 PRK11650 ugpC glycerol-3-phosp 100.0 1.2E-39 2.5E-44 346.6 22.0 205 349-560 10-225 (356)
64 TIGR02314 ABC_MetN D-methionin 100.0 2.6E-39 5.7E-44 341.5 24.5 205 349-560 8-231 (343)
65 COG1116 TauB ABC-type nitrate/ 100.0 4.1E-40 8.8E-45 324.1 16.8 193 83-294 9-209 (248)
66 cd03261 ABC_Org_Solvent_Resist 100.0 4.2E-39 9.1E-44 324.1 23.9 203 349-559 7-226 (235)
67 PRK09536 btuD corrinoid ABC tr 100.0 4.7E-39 1E-43 345.6 25.6 226 349-583 10-253 (402)
68 COG4555 NatA ABC-type Na+ tran 100.0 5.6E-40 1.2E-44 310.3 15.6 205 349-561 8-224 (245)
69 COG4559 ABC-type hemin transpo 100.0 1.4E-39 3.1E-44 309.8 18.5 227 349-584 8-256 (259)
70 PRK13537 nodulation ABC transp 100.0 8.6E-39 1.9E-43 334.0 24.4 203 349-560 14-228 (306)
71 cd03259 ABC_Carb_Solutes_like 100.0 4.9E-39 1.1E-43 318.7 21.3 191 349-545 7-208 (213)
72 TIGR03265 PhnT2 putative 2-ami 100.0 6.9E-39 1.5E-43 340.3 23.7 204 349-560 11-225 (353)
73 cd03226 ABC_cobalt_CbiO_domain 100.0 7.1E-39 1.5E-43 315.8 22.1 190 349-544 6-202 (205)
74 PRK11432 fbpC ferric transport 100.0 7.5E-39 1.6E-43 339.5 23.8 204 349-560 13-227 (351)
75 COG0411 LivG ABC-type branched 100.0 1.3E-39 2.7E-44 318.2 16.3 204 349-561 11-241 (250)
76 TIGR00960 3a0501s02 Type II (G 100.0 9.2E-39 2E-43 317.4 22.8 190 349-544 8-214 (216)
77 COG3840 ThiQ ABC-type thiamine 100.0 4.1E-39 8.9E-44 299.8 18.3 203 349-561 8-221 (231)
78 TIGR03258 PhnT 2-aminoethylpho 100.0 1.4E-38 3E-43 338.6 23.5 204 349-560 12-229 (362)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.8E-38 3.9E-43 315.7 22.6 190 349-544 7-216 (218)
80 PRK10851 sulfate/thiosulfate t 100.0 1.4E-38 3.1E-43 337.8 23.1 204 349-560 9-227 (353)
81 cd03296 ABC_CysA_sulfate_impor 100.0 2.7E-38 5.8E-43 319.1 23.7 203 349-559 9-226 (239)
82 TIGR01186 proV glycine betaine 100.0 2.2E-38 4.8E-43 336.5 24.1 197 357-560 7-220 (363)
83 cd03265 ABC_DrrA DrrA is the A 100.0 3.2E-38 7E-43 314.5 23.8 200 349-556 7-218 (220)
84 PRK09452 potA putrescine/sperm 100.0 1.3E-38 2.8E-43 340.1 22.2 204 349-560 21-235 (375)
85 cd03256 ABC_PhnC_transporter A 100.0 2.4E-38 5.1E-43 319.5 22.6 202 349-557 7-232 (241)
86 cd03237 ABC_RNaseL_inhibitor_d 100.0 7.2E-39 1.6E-43 324.5 18.7 215 85-333 8-229 (246)
87 cd03219 ABC_Mj1267_LivG_branch 100.0 3.2E-38 6.9E-43 317.7 23.3 202 349-559 7-232 (236)
88 TIGR01188 drrA daunorubicin re 100.0 2.6E-38 5.6E-43 330.1 23.4 201 351-560 2-214 (302)
89 PRK11000 maltose/maltodextrin 100.0 2.7E-38 5.9E-43 338.0 23.9 203 349-559 10-223 (369)
90 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.1E-38 6.6E-43 314.7 22.6 189 349-542 7-206 (220)
91 PRK13536 nodulation factor exp 100.0 4.3E-38 9.2E-43 332.6 24.4 203 349-560 48-262 (340)
92 cd03268 ABC_BcrA_bacitracin_re 100.0 4.2E-38 9.2E-43 310.9 22.8 190 349-545 7-203 (208)
93 PRK11153 metN DL-methionine tr 100.0 4.8E-38 1E-42 333.3 24.7 205 349-560 8-231 (343)
94 COG1125 OpuBA ABC-type proline 100.0 1E-38 2.2E-43 311.6 17.3 197 82-292 6-212 (309)
95 cd03235 ABC_Metallic_Cations A 100.0 3.1E-38 6.8E-43 312.9 21.2 189 349-544 6-208 (213)
96 TIGR02315 ABC_phnC phosphonate 100.0 3.1E-38 6.6E-43 319.2 21.3 202 349-557 8-233 (243)
97 PRK13637 cbiO cobalt transport 100.0 6.9E-38 1.5E-42 324.6 24.3 205 349-560 9-235 (287)
98 PRK11607 potG putrescine trans 100.0 5.4E-38 1.2E-42 335.8 24.1 204 349-560 26-240 (377)
99 COG2884 FtsE Predicted ATPase 100.0 2.2E-38 4.8E-43 297.2 18.4 192 349-546 8-215 (223)
100 cd03225 ABC_cobalt_CbiO_domain 100.0 6.3E-38 1.4E-42 310.2 22.7 190 349-544 6-210 (211)
101 TIGR02673 FtsE cell division A 100.0 3.5E-38 7.5E-43 312.8 20.6 190 349-544 8-213 (214)
102 COG1124 DppF ABC-type dipeptid 100.0 9.5E-39 2.1E-43 311.8 16.1 200 69-292 3-218 (252)
103 cd03301 ABC_MalK_N The N-termi 100.0 8.5E-38 1.9E-42 309.7 23.2 191 349-545 7-208 (213)
104 cd03258 ABC_MetN_methionine_tr 100.0 8.2E-38 1.8E-42 314.2 23.2 204 349-559 8-230 (233)
105 TIGR01288 nodI ATP-binding ABC 100.0 8.3E-38 1.8E-42 326.4 24.1 203 349-560 11-225 (303)
106 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-37 2.3E-42 310.8 23.0 190 349-544 8-217 (221)
107 PRK13634 cbiO cobalt transport 100.0 9.7E-38 2.1E-42 323.9 23.2 206 349-561 9-237 (290)
108 cd03292 ABC_FtsE_transporter F 100.0 1.5E-37 3.2E-42 308.1 23.2 190 349-544 7-212 (214)
109 PRK13647 cbiO cobalt transport 100.0 1.4E-37 3E-42 320.2 23.8 201 349-557 11-225 (274)
110 PRK13651 cobalt transporter AT 100.0 1.1E-37 2.3E-42 325.4 23.1 204 349-560 9-255 (305)
111 PRK11831 putative ABC transpor 100.0 1.4E-37 3E-42 319.4 23.6 204 349-560 14-234 (269)
112 COG1137 YhbG ABC-type (unclass 100.0 6.9E-39 1.5E-43 302.6 12.5 204 349-561 11-230 (243)
113 PRK11248 tauB taurine transpor 100.0 2.1E-37 4.4E-42 315.7 24.3 189 349-543 8-204 (255)
114 PRK10908 cell division protein 100.0 2E-37 4.3E-42 309.3 23.4 191 349-545 8-214 (222)
115 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-37 2.5E-42 320.1 22.2 204 349-560 31-251 (269)
116 PRK11247 ssuB aliphatic sulfon 100.0 1.4E-37 3.1E-42 317.0 22.6 190 349-546 19-212 (257)
117 COG3839 MalK ABC-type sugar tr 100.0 1.7E-38 3.7E-43 329.5 15.8 198 69-290 3-208 (338)
118 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.7E-37 3.7E-42 307.2 21.5 189 349-545 7-206 (211)
119 PRK13646 cbiO cobalt transport 100.0 2.1E-37 4.6E-42 320.8 22.8 205 349-560 9-236 (286)
120 PRK11144 modC molybdate transp 100.0 2.4E-37 5.1E-42 329.1 23.7 200 349-560 7-219 (352)
121 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.2E-37 6.9E-42 310.7 23.4 203 349-560 8-222 (236)
122 cd03224 ABC_TM1139_LivF_branch 100.0 2.6E-37 5.7E-42 308.0 22.6 201 349-558 7-220 (222)
123 cd03218 ABC_YhbG The ABC trans 100.0 3.4E-37 7.3E-42 309.4 23.5 202 349-559 7-222 (232)
124 PRK13548 hmuV hemin importer A 100.0 3.7E-37 8E-42 314.4 23.9 203 349-559 9-230 (258)
125 cd03269 ABC_putative_ATPase Th 100.0 2.3E-37 5E-42 306.1 21.7 190 349-545 7-205 (210)
126 cd03266 ABC_NatA_sodium_export 100.0 2.9E-37 6.3E-42 307.0 22.5 191 349-545 8-213 (218)
127 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.8E-37 8.3E-42 311.2 23.8 204 349-559 7-225 (242)
128 PRK15079 oligopeptide ABC tran 100.0 2.9E-37 6.3E-42 325.3 23.8 197 357-560 35-252 (331)
129 PRK10584 putative ABC transpor 100.0 2.7E-37 5.9E-42 309.4 22.4 191 349-545 13-223 (228)
130 COG1245 Predicted ATPase, RNas 100.0 2.6E-38 5.6E-43 329.0 15.3 201 83-315 348-555 (591)
131 PRK11629 lolD lipoprotein tran 100.0 3.1E-37 6.7E-42 310.2 22.7 192 349-546 12-223 (233)
132 PRK13643 cbiO cobalt transport 100.0 3.1E-37 6.7E-42 319.8 23.4 204 349-560 8-234 (288)
133 COG1135 AbcC ABC-type metal io 100.0 8.5E-38 1.8E-42 313.6 18.4 189 93-292 21-218 (339)
134 PRK14250 phosphate ABC transpo 100.0 3.7E-37 8.1E-42 311.3 23.2 203 349-560 10-222 (241)
135 cd03263 ABC_subfamily_A The AB 100.0 4.2E-37 9E-42 306.3 23.0 199 349-556 7-218 (220)
136 PRK13650 cbiO cobalt transport 100.0 3.7E-37 8.1E-42 317.8 23.4 204 349-560 11-230 (279)
137 COG1136 SalX ABC-type antimicr 100.0 1.4E-37 3E-42 305.8 19.0 198 82-291 6-217 (226)
138 TIGR03522 GldA_ABC_ATP gliding 100.0 4.6E-37 1E-41 320.5 24.2 202 349-560 9-222 (301)
139 PRK09493 glnQ glutamine ABC tr 100.0 4.8E-37 1E-41 310.1 23.4 202 349-559 8-225 (240)
140 cd03262 ABC_HisP_GlnQ_permease 100.0 3.8E-37 8.3E-42 304.9 22.1 189 349-544 7-211 (213)
141 cd03260 ABC_PstB_phosphate_tra 100.0 3.8E-37 8.3E-42 308.2 22.3 197 349-556 7-226 (227)
142 PRK13652 cbiO cobalt transport 100.0 5.9E-37 1.3E-41 316.1 24.3 205 349-560 10-228 (277)
143 PRK11264 putative amino-acid A 100.0 4.1E-37 9E-42 312.3 22.7 202 349-559 10-233 (250)
144 PRK10070 glycine betaine trans 100.0 5.2E-37 1.1E-41 329.6 24.1 198 356-560 41-255 (400)
145 PRK13636 cbiO cobalt transport 100.0 5.8E-37 1.2E-41 317.1 23.6 206 349-561 12-233 (283)
146 cd03257 ABC_NikE_OppD_transpor 100.0 4.9E-37 1.1E-41 307.2 22.3 192 349-545 8-223 (228)
147 PRK11300 livG leucine/isoleuci 100.0 6.4E-37 1.4E-41 311.9 23.4 204 349-560 12-244 (255)
148 TIGR02142 modC_ABC molybdenum 100.0 5.7E-37 1.2E-41 326.5 24.0 202 349-560 6-222 (354)
149 TIGR03410 urea_trans_UrtE urea 100.0 5.3E-37 1.2E-41 307.7 22.4 201 349-557 7-219 (230)
150 PRK13641 cbiO cobalt transport 100.0 6.5E-37 1.4E-41 317.3 23.8 204 349-560 9-235 (287)
151 COG4175 ProV ABC-type proline/ 100.0 1E-37 2.2E-42 312.5 16.7 198 357-561 42-256 (386)
152 COG1122 CbiO ABC-type cobalt t 100.0 6E-38 1.3E-42 313.4 15.0 192 81-292 7-215 (235)
153 TIGR01184 ntrCD nitrate transp 100.0 4.9E-37 1.1E-41 308.3 21.6 182 360-546 2-193 (230)
154 TIGR03005 ectoine_ehuA ectoine 100.0 6.6E-37 1.4E-41 311.4 22.3 204 349-560 7-237 (252)
155 TIGR02769 nickel_nikE nickel i 100.0 4.9E-37 1.1E-41 314.7 21.4 202 357-565 25-246 (265)
156 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-36 2.4E-41 307.7 23.7 201 349-559 9-231 (242)
157 TIGR01277 thiQ thiamine ABC tr 100.0 1.1E-36 2.3E-41 302.2 22.9 189 349-545 7-206 (213)
158 PRK13639 cbiO cobalt transport 100.0 9.6E-37 2.1E-41 314.2 23.5 204 349-560 8-227 (275)
159 PRK10771 thiQ thiamine transpo 100.0 7.6E-37 1.7E-41 307.1 22.2 203 349-561 8-221 (232)
160 PRK10575 iron-hydroxamate tran 100.0 8.8E-37 1.9E-41 312.8 22.8 204 349-560 18-238 (265)
161 PRK13631 cbiO cobalt transport 100.0 8.7E-37 1.9E-41 320.5 23.0 205 349-561 28-267 (320)
162 TIGR03415 ABC_choXWV_ATP choli 100.0 1E-36 2.3E-41 325.1 23.9 204 349-560 31-255 (382)
163 TIGR03740 galliderm_ABC gallid 100.0 1.5E-36 3.2E-41 303.2 23.5 191 349-546 7-202 (223)
164 PRK10253 iron-enterobactin tra 100.0 7E-37 1.5E-41 313.5 21.7 204 349-560 14-234 (265)
165 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-37 2.4E-42 294.8 14.4 200 69-292 1-209 (245)
166 cd03264 ABC_drug_resistance_li 100.0 1E-36 2.2E-41 301.7 22.1 188 349-545 7-206 (211)
167 PRK10895 lipopolysaccharide AB 100.0 1.1E-36 2.4E-41 307.6 22.8 202 349-559 10-226 (241)
168 PRK11308 dppF dipeptide transp 100.0 1.1E-36 2.4E-41 320.5 23.5 197 357-560 29-245 (327)
169 PRK09544 znuC high-affinity zi 100.0 1.5E-36 3.3E-41 308.5 23.6 197 349-559 11-209 (251)
170 PRK11022 dppD dipeptide transp 100.0 1.1E-36 2.5E-41 320.5 23.4 205 349-560 10-244 (326)
171 cd03297 ABC_ModC_molybdenum_tr 100.0 7.8E-37 1.7E-41 303.3 20.9 188 349-545 7-209 (214)
172 PRK13638 cbiO cobalt transport 100.0 1.1E-36 2.5E-41 313.0 22.6 204 349-561 8-227 (271)
173 PRK11124 artP arginine transpo 100.0 1.6E-36 3.4E-41 306.7 23.0 201 349-558 9-229 (242)
174 PRK10619 histidine/lysine/argi 100.0 1.4E-36 3E-41 310.0 22.7 202 349-559 12-241 (257)
175 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-36 2.4E-41 302.5 21.1 195 83-291 7-213 (216)
176 TIGR03873 F420-0_ABC_ATP propo 100.0 2.6E-36 5.6E-41 307.8 24.2 203 349-560 8-227 (256)
177 cd03222 ABC_RNaseL_inhibitor T 100.0 7.5E-37 1.6E-41 293.9 18.8 157 370-573 21-177 (177)
178 COG0410 LivF ABC-type branched 100.0 2E-36 4.2E-41 293.7 21.7 205 349-561 10-228 (237)
179 PRK13635 cbiO cobalt transport 100.0 1.8E-36 4E-41 312.7 22.7 205 349-561 12-231 (279)
180 PRK13644 cbiO cobalt transport 100.0 2.5E-36 5.3E-41 311.0 23.5 203 349-560 8-225 (274)
181 PRK15093 antimicrobial peptide 100.0 2.3E-36 5E-41 318.9 23.8 205 349-560 10-249 (330)
182 PRK13645 cbiO cobalt transport 100.0 2.2E-36 4.7E-41 313.7 23.2 205 349-560 13-241 (289)
183 PRK13649 cbiO cobalt transport 100.0 2.6E-36 5.7E-41 311.7 23.7 204 349-560 9-235 (280)
184 COG4604 CeuD ABC-type enteroch 100.0 1.1E-37 2.5E-42 293.6 12.0 217 349-573 8-240 (252)
185 PRK11614 livF leucine/isoleuci 100.0 1.9E-36 4.2E-41 305.1 21.8 203 349-560 12-227 (237)
186 PRK09984 phosphonate/organopho 100.0 2.1E-36 4.6E-41 309.5 22.3 201 349-557 11-240 (262)
187 PRK11231 fecE iron-dicitrate t 100.0 2.6E-36 5.7E-41 307.5 22.6 203 349-560 9-228 (255)
188 COG1131 CcmA ABC-type multidru 100.0 9.6E-37 2.1E-41 316.2 19.6 194 82-292 9-213 (293)
189 PRK11701 phnK phosphonate C-P 100.0 3.8E-36 8.1E-41 306.9 23.6 203 349-559 13-241 (258)
190 TIGR00972 3a0107s01c2 phosphat 100.0 2.8E-36 6.2E-41 305.8 22.5 200 349-559 8-232 (247)
191 PRK13633 cobalt transporter AT 100.0 3.4E-36 7.4E-41 310.9 22.7 206 349-562 11-236 (280)
192 COG1127 Ttg2A ABC-type transpo 100.0 1.8E-36 3.9E-41 294.6 19.3 206 68-293 7-223 (263)
193 cd03235 ABC_Metallic_Cations A 100.0 2.1E-36 4.5E-41 299.9 20.2 191 81-291 3-207 (213)
194 COG1118 CysA ABC-type sulfate/ 100.0 6.4E-37 1.4E-41 306.6 16.5 201 69-291 2-213 (345)
195 PRK15112 antimicrobial peptide 100.0 3.4E-36 7.3E-41 308.9 22.1 197 357-560 27-240 (267)
196 COG3842 PotA ABC-type spermidi 100.0 3.8E-37 8.3E-42 321.0 15.3 196 69-291 5-212 (352)
197 TIGR02673 FtsE cell division A 100.0 2.2E-36 4.7E-41 299.9 19.2 195 83-291 7-212 (214)
198 TIGR03608 L_ocin_972_ABC putat 100.0 4.3E-36 9.3E-41 295.9 21.2 185 349-541 5-206 (206)
199 COG4525 TauB ABC-type taurine 100.0 1.9E-36 4.1E-41 284.8 17.6 201 349-554 10-219 (259)
200 cd03225 ABC_cobalt_CbiO_domain 100.0 2E-36 4.4E-41 299.4 18.9 194 82-291 4-209 (211)
201 TIGR02770 nickel_nikD nickel i 100.0 4.8E-36 1E-40 301.0 21.7 195 359-560 2-216 (230)
202 PRK09473 oppD oligopeptide tra 100.0 4.6E-36 1E-40 316.2 22.6 205 349-560 19-252 (330)
203 PRK13640 cbiO cobalt transport 100.0 5.5E-36 1.2E-40 309.6 22.8 205 349-561 12-234 (282)
204 cd03226 ABC_cobalt_CbiO_domain 100.0 2.8E-36 6E-41 297.3 19.3 193 81-291 3-201 (205)
205 PRK14247 phosphate ABC transpo 100.0 6.1E-36 1.3E-40 303.9 22.2 202 349-560 10-235 (250)
206 PRK13632 cbiO cobalt transport 100.0 6.5E-36 1.4E-40 307.4 22.6 204 349-560 14-232 (271)
207 PRK13537 nodulation ABC transp 100.0 2.6E-36 5.7E-41 315.3 19.8 198 69-292 7-214 (306)
208 cd03222 ABC_RNaseL_inhibitor T 100.0 2.9E-36 6.2E-41 289.9 18.5 172 80-319 3-175 (177)
209 PRK15439 autoinducer 2 ABC tra 100.0 4.9E-36 1.1E-40 334.4 23.2 202 349-559 18-229 (510)
210 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.7E-36 5.9E-41 300.0 18.9 198 82-291 5-215 (218)
211 cd03300 ABC_PotA_N PotA is an 100.0 1.4E-35 2.9E-40 298.1 24.0 203 349-559 7-220 (232)
212 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-36 4.7E-41 319.4 19.0 199 83-292 7-217 (343)
213 COG4598 HisP ABC-type histidin 100.0 1.2E-36 2.6E-41 282.5 14.8 204 349-561 13-243 (256)
214 PRK13538 cytochrome c biogenes 100.0 6.9E-36 1.5E-40 294.5 21.2 186 349-541 8-202 (204)
215 TIGR01978 sufC FeS assembly AT 100.0 1E-35 2.2E-40 300.6 22.9 200 349-557 7-232 (243)
216 PRK13547 hmuV hemin importer A 100.0 1.1E-35 2.4E-40 305.5 23.4 204 349-560 8-245 (272)
217 COG0444 DppD ABC-type dipeptid 100.0 6.8E-36 1.5E-40 303.8 21.3 199 356-561 18-245 (316)
218 TIGR02323 CP_lyasePhnK phospho 100.0 1.2E-35 2.6E-40 302.3 23.2 203 349-559 10-238 (253)
219 cd03261 ABC_Org_Solvent_Resist 100.0 3E-36 6.4E-41 303.4 18.5 198 82-291 5-212 (235)
220 PRK15056 manganese/iron transp 100.0 7.1E-36 1.5E-40 307.2 21.6 202 349-559 13-230 (272)
221 COG1117 PstB ABC-type phosphat 100.0 2.3E-36 5E-41 288.4 16.6 202 349-561 14-239 (253)
222 cd03299 ABC_ModC_like Archeal 100.0 1.1E-35 2.3E-40 299.5 22.0 203 349-560 7-220 (235)
223 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-35 2.7E-40 296.0 22.0 190 349-544 8-217 (220)
224 PRK14268 phosphate ABC transpo 100.0 1.9E-35 4.1E-40 301.8 23.9 200 349-559 19-242 (258)
225 cd03259 ABC_Carb_Solutes_like 100.0 2.8E-36 6E-41 299.0 17.1 191 82-291 5-206 (213)
226 PRK13648 cbiO cobalt transport 100.0 1.3E-35 2.8E-40 304.9 22.6 204 349-560 14-232 (269)
227 PRK14242 phosphate transporter 100.0 2E-35 4.4E-40 300.6 23.8 201 349-560 13-238 (253)
228 PRK13543 cytochrome c biogenes 100.0 1.4E-35 3.1E-40 294.4 22.0 188 349-543 18-212 (214)
229 cd03267 ABC_NatA_like Similar 100.0 1.6E-35 3.5E-40 298.4 22.7 190 350-545 29-231 (236)
230 PRK10418 nikD nickel transport 100.0 1.8E-35 3.9E-40 301.2 23.3 203 349-560 11-231 (254)
231 cd03292 ABC_FtsE_transporter F 100.0 6.2E-36 1.3E-40 296.5 19.2 199 82-291 5-211 (214)
232 PRK14273 phosphate ABC transpo 100.0 2E-35 4.2E-40 300.9 23.2 201 349-560 14-239 (254)
233 PRK13642 cbiO cobalt transport 100.0 1.9E-35 4.1E-40 304.9 23.1 205 349-561 11-231 (277)
234 COG0411 LivG ABC-type branched 100.0 1.8E-36 3.9E-41 296.1 14.6 211 81-295 8-230 (250)
235 COG4148 ModC ABC-type molybdat 100.0 2E-36 4.3E-41 298.6 14.9 182 375-560 25-219 (352)
236 PRK11650 ugpC glycerol-3-phosp 100.0 3.7E-36 8E-41 319.8 17.9 199 69-291 3-210 (356)
237 PRK14259 phosphate ABC transpo 100.0 2.7E-35 5.9E-40 302.4 23.7 203 349-560 20-254 (269)
238 PRK14267 phosphate ABC transpo 100.0 1.6E-35 3.5E-40 301.2 21.8 202 349-560 11-238 (253)
239 cd03262 ABC_HisP_GlnQ_permease 100.0 1E-35 2.2E-40 294.8 19.7 196 82-291 5-210 (213)
240 PRK10247 putative ABC transpor 100.0 2.1E-35 4.5E-40 295.5 22.0 187 349-543 14-212 (225)
241 PRK10419 nikE nickel transport 100.0 1.7E-35 3.7E-40 303.8 21.9 197 356-559 25-241 (268)
242 cd03265 ABC_DrrA DrrA is the A 100.0 7.6E-36 1.7E-40 297.4 18.4 195 82-291 5-207 (220)
243 cd03256 ABC_PhnC_transporter A 100.0 9.8E-36 2.1E-40 300.4 19.4 199 82-291 5-220 (241)
244 PRK03695 vitamin B12-transport 100.0 3.2E-35 6.9E-40 298.4 23.2 193 358-559 11-222 (248)
245 TIGR00968 3a0106s01 sulfate AB 100.0 4.3E-35 9.2E-40 295.5 23.9 203 349-559 7-220 (237)
246 PRK14241 phosphate transporter 100.0 3.2E-35 6.9E-40 300.1 23.1 203 349-559 11-242 (258)
247 cd03219 ABC_Mj1267_LivG_branch 100.0 8.4E-36 1.8E-40 300.1 18.4 198 81-291 4-218 (236)
248 cd03231 ABC_CcmA_heme_exporter 100.0 2.3E-35 5.1E-40 290.1 21.1 184 349-541 7-198 (201)
249 PRK09700 D-allose transporter 100.0 1.2E-35 2.6E-40 331.5 21.3 202 349-559 12-234 (510)
250 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2E-35 4.2E-40 295.5 20.6 187 349-545 29-219 (224)
251 COG3638 ABC-type phosphate/pho 100.0 1.1E-35 2.4E-40 288.4 18.0 212 69-298 3-230 (258)
252 PRK10762 D-ribose transporter 100.0 1.2E-35 2.6E-40 330.7 21.0 200 349-557 11-228 (501)
253 PRK14235 phosphate transporter 100.0 3.9E-35 8.4E-40 301.0 23.0 200 349-559 26-251 (267)
254 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-35 3E-40 299.8 19.3 198 83-291 7-221 (243)
255 TIGR01166 cbiO cobalt transpor 100.0 1.4E-35 3E-40 288.9 18.2 169 357-531 6-190 (190)
256 PRK10908 cell division protein 100.0 2.3E-35 5E-40 294.3 20.3 196 83-292 7-213 (222)
257 TIGR02324 CP_lyasePhnL phospho 100.0 3.7E-35 7.9E-40 293.2 21.6 180 357-542 22-223 (224)
258 PRK13647 cbiO cobalt transport 100.0 1.3E-35 2.8E-40 305.6 18.8 203 69-292 4-214 (274)
259 PRK10744 pstB phosphate transp 100.0 3.9E-35 8.4E-40 299.8 22.1 200 349-559 20-244 (260)
260 cd03245 ABCC_bacteriocin_expor 100.0 3E-35 6.6E-40 292.9 20.6 186 349-545 9-215 (220)
261 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-35 2.3E-40 296.4 17.3 191 82-290 5-206 (220)
262 PRK14248 phosphate ABC transpo 100.0 2.9E-35 6.3E-40 302.1 21.0 201 349-560 28-253 (268)
263 PRK13536 nodulation factor exp 100.0 1.4E-35 3E-40 313.5 19.0 202 68-292 40-248 (340)
264 PRK14269 phosphate ABC transpo 100.0 5.1E-35 1.1E-39 296.5 22.2 201 349-560 9-231 (246)
265 TIGR03771 anch_rpt_ABC anchore 100.0 2.4E-35 5.2E-40 294.6 19.5 186 371-560 3-202 (223)
266 PRK10982 galactose/methyl gala 100.0 3.7E-35 8.1E-40 326.1 23.1 200 349-557 5-221 (491)
267 PRK13539 cytochrome c biogenes 100.0 4.1E-35 8.9E-40 289.6 20.8 185 349-542 9-199 (207)
268 PRK14245 phosphate ABC transpo 100.0 5.9E-35 1.3E-39 296.7 22.4 201 349-560 10-235 (250)
269 TIGR01188 drrA daunorubicin re 100.0 2E-35 4.4E-40 308.3 19.3 192 86-292 2-200 (302)
270 PRK14270 phosphate ABC transpo 100.0 9.6E-35 2.1E-39 295.3 23.7 201 349-560 11-236 (251)
271 PRK14256 phosphate ABC transpo 100.0 7E-35 1.5E-39 296.5 22.7 202 349-560 11-237 (252)
272 cd03258 ABC_MetN_methionine_tr 100.0 2.6E-35 5.7E-40 296.0 19.3 198 83-291 7-216 (233)
273 PRK11432 fbpC ferric transport 100.0 1.2E-35 2.6E-40 315.1 17.6 199 69-291 6-212 (351)
274 cd03266 ABC_NatA_sodium_export 100.0 2.2E-35 4.8E-40 293.5 18.5 195 83-291 7-211 (218)
275 TIGR01288 nodI ATP-binding ABC 100.0 1.9E-35 4.1E-40 308.7 18.8 201 69-292 4-211 (303)
276 COG4181 Predicted ABC-type tra 100.0 2.9E-35 6.3E-40 271.5 17.6 182 358-545 25-223 (228)
277 cd03234 ABCG_White The White s 100.0 4.3E-35 9.4E-40 293.2 20.5 191 349-545 10-221 (226)
278 cd03214 ABC_Iron-Siderophores_ 100.0 2.8E-35 6E-40 284.6 18.4 170 349-545 6-175 (180)
279 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-35 3.5E-40 315.1 18.3 200 68-291 4-214 (362)
280 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.9E-35 4.1E-40 300.9 18.0 209 349-566 7-237 (255)
281 PRK09536 btuD corrinoid ABC tr 100.0 1.9E-35 4.1E-40 317.7 19.0 202 69-292 3-215 (402)
282 PRK13637 cbiO cobalt transport 100.0 1.9E-35 4.1E-40 306.4 18.2 187 93-292 22-221 (287)
283 PRK10261 glutathione transport 100.0 3.3E-35 7.1E-40 334.7 21.9 204 349-559 19-258 (623)
284 cd03301 ABC_MalK_N The N-termi 100.0 1.7E-35 3.6E-40 293.3 17.0 194 82-291 5-206 (213)
285 TIGR03269 met_CoM_red_A2 methy 100.0 5.4E-35 1.2E-39 327.0 23.1 203 349-559 7-258 (520)
286 PRK13549 xylose transporter AT 100.0 6E-35 1.3E-39 325.5 23.2 201 349-558 12-231 (506)
287 cd03252 ABCC_Hemolysin The ABC 100.0 8E-35 1.7E-39 293.3 21.9 199 349-560 7-226 (237)
288 cd03269 ABC_putative_ATPase Th 100.0 3.3E-35 7.2E-40 290.6 18.6 192 82-291 5-203 (210)
289 cd03268 ABC_BcrA_bacitracin_re 100.0 2.8E-35 6.2E-40 290.7 18.1 191 82-291 5-201 (208)
290 cd03296 ABC_CysA_sulfate_impor 100.0 1.9E-35 4E-40 298.4 17.0 193 83-291 8-212 (239)
291 PRK14274 phosphate ABC transpo 100.0 8.9E-35 1.9E-39 297.0 22.1 201 349-560 19-244 (259)
292 TIGR02211 LolD_lipo_ex lipopro 100.0 6.7E-35 1.4E-39 290.7 20.7 194 83-291 7-216 (221)
293 PRK14239 phosphate transporter 100.0 1E-34 2.3E-39 295.1 22.4 201 349-560 12-237 (252)
294 TIGR03265 PhnT2 putative 2-ami 100.0 1.7E-35 3.7E-40 314.4 17.2 200 69-292 4-211 (353)
295 cd03218 ABC_YhbG The ABC trans 100.0 3.4E-35 7.3E-40 294.9 18.4 198 82-292 5-209 (232)
296 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.7E-35 5.8E-40 302.5 18.1 195 82-291 29-236 (269)
297 PRK14251 phosphate ABC transpo 100.0 9.5E-35 2.1E-39 295.3 21.8 200 349-559 11-235 (251)
298 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-34 2.5E-39 278.4 21.0 157 349-544 7-171 (173)
299 PRK14240 phosphate transporter 100.0 1.5E-34 3.3E-39 293.6 23.1 201 349-560 10-235 (250)
300 PRK14244 phosphate ABC transpo 100.0 9.2E-35 2E-39 295.4 21.4 200 349-559 12-237 (251)
301 PRK10938 putative molybdenum t 100.0 4.3E-35 9.4E-40 325.5 20.6 198 349-559 10-224 (490)
302 PRK15134 microcin C ABC transp 100.0 6.4E-35 1.4E-39 327.0 22.1 204 349-559 12-246 (529)
303 PRK14258 phosphate ABC transpo 100.0 2E-34 4.3E-39 294.8 23.8 203 349-560 14-246 (261)
304 PRK13409 putative ATPase RIL; 100.0 3E-35 6.6E-40 331.4 19.4 203 83-316 346-554 (590)
305 PRK14272 phosphate ABC transpo 100.0 1.4E-34 2.9E-39 294.2 22.2 201 349-559 11-236 (252)
306 PRK11153 metN DL-methionine tr 100.0 5.6E-35 1.2E-39 309.9 20.0 199 83-292 7-217 (343)
307 PRK09493 glnQ glutamine ABC tr 100.0 5.9E-35 1.3E-39 294.8 19.3 198 83-292 7-212 (240)
308 cd03254 ABCC_Glucan_exporter_l 100.0 1E-34 2.2E-39 290.9 20.8 198 349-559 9-226 (229)
309 PRK13546 teichoic acids export 100.0 1.9E-34 4.1E-39 295.1 23.2 198 356-565 37-238 (264)
310 PRK14275 phosphate ABC transpo 100.0 2.4E-34 5.1E-39 298.0 24.0 200 349-559 46-270 (286)
311 PRK14249 phosphate ABC transpo 100.0 2.6E-34 5.6E-39 292.1 23.8 200 349-559 11-235 (251)
312 PRK10584 putative ABC transpor 100.0 6.8E-35 1.5E-39 292.1 19.2 203 69-291 6-221 (228)
313 PRK11000 maltose/maltodextrin 100.0 2.6E-35 5.7E-40 315.0 17.0 199 69-291 3-209 (369)
314 PRK11288 araG L-arabinose tran 100.0 1.1E-34 2.4E-39 323.0 22.8 190 349-545 11-217 (501)
315 PRK14238 phosphate transporter 100.0 2.2E-34 4.8E-39 296.0 23.2 201 349-560 31-256 (271)
316 cd03229 ABC_Class3 This class 100.0 1.5E-34 3.2E-39 279.0 20.6 160 349-544 7-177 (178)
317 COG2884 FtsE Predicted ATPase 100.0 2.5E-35 5.5E-40 276.6 14.5 193 81-291 5-212 (223)
318 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-34 2.6E-39 291.3 20.6 199 349-560 7-226 (234)
319 PRK11831 putative ABC transpor 100.0 9.6E-35 2.1E-39 298.4 20.0 207 66-292 4-220 (269)
320 PRK14262 phosphate ABC transpo 100.0 2.7E-34 5.8E-39 291.8 23.0 200 349-559 10-234 (250)
321 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.9E-35 1.3E-39 295.3 18.2 198 82-292 5-212 (242)
322 PRK10851 sulfate/thiosulfate t 100.0 6.2E-35 1.3E-39 310.1 19.1 200 69-292 2-213 (353)
323 PRK14260 phosphate ABC transpo 100.0 1.9E-34 4.2E-39 294.5 22.0 202 349-559 14-243 (259)
324 cd03260 ABC_PstB_phosphate_tra 100.0 9.1E-35 2E-39 291.0 19.2 194 82-292 5-216 (227)
325 TIGR01189 ccmA heme ABC export 100.0 1.5E-34 3.3E-39 283.5 20.3 183 349-540 7-197 (198)
326 PRK15079 oligopeptide ABC tran 100.0 1.2E-34 2.6E-39 305.5 20.9 213 69-292 8-238 (331)
327 PRK11629 lolD lipoprotein tran 100.0 8.4E-35 1.8E-39 292.5 18.9 197 83-291 11-220 (233)
328 PRK11247 ssuB aliphatic sulfon 100.0 6.3E-35 1.4E-39 297.5 18.1 194 69-292 12-210 (257)
329 cd03224 ABC_TM1139_LivF_branch 100.0 5.9E-35 1.3E-39 291.1 17.5 197 82-291 5-207 (222)
330 PRK11264 putative amino-acid A 100.0 1.1E-34 2.5E-39 294.4 19.9 203 69-291 3-219 (250)
331 PRK14237 phosphate transporter 100.0 3.5E-34 7.7E-39 293.9 23.6 201 349-560 27-252 (267)
332 COG4152 ABC-type uncharacteriz 100.0 4.3E-35 9.4E-40 284.4 15.8 203 349-560 9-220 (300)
333 PRK14243 phosphate transporter 100.0 2.8E-34 6E-39 294.2 22.6 203 349-560 17-249 (264)
334 PRK14254 phosphate ABC transpo 100.0 3.2E-34 7E-39 296.8 23.2 200 349-559 46-269 (285)
335 cd03263 ABC_subfamily_A The AB 100.0 1.1E-34 2.3E-39 288.9 18.9 192 82-291 5-207 (220)
336 PRK14250 phosphate ABC transpo 100.0 1.1E-34 2.3E-39 293.3 19.0 198 69-292 3-208 (241)
337 PRK13643 cbiO cobalt transport 100.0 7.9E-35 1.7E-39 301.9 18.4 199 82-293 6-221 (288)
338 PRK13634 cbiO cobalt transport 100.0 8.6E-35 1.9E-39 301.9 18.7 199 83-292 8-222 (290)
339 cd03264 ABC_drug_resistance_li 100.0 1.1E-34 2.5E-39 287.0 18.7 193 82-291 5-204 (211)
340 cd03298 ABC_ThiQ_thiamine_tran 100.0 1E-34 2.2E-39 287.3 18.4 174 100-291 21-204 (211)
341 PRK13651 cobalt transporter AT 100.0 6E-35 1.3E-39 304.7 17.4 208 83-292 8-241 (305)
342 PRK11248 tauB taurine transpor 100.0 1.1E-34 2.3E-39 295.7 18.9 189 83-290 7-203 (255)
343 PRK10070 glycine betaine trans 100.0 7.9E-35 1.7E-39 312.7 18.8 212 69-292 4-241 (400)
344 PRK14253 phosphate ABC transpo 100.0 4.1E-34 9E-39 290.3 23.1 200 349-559 10-233 (249)
345 PRK13638 cbiO cobalt transport 100.0 7.8E-35 1.7E-39 299.4 17.9 196 83-292 7-212 (271)
346 PRK13641 cbiO cobalt transport 100.0 1E-34 2.2E-39 300.9 18.7 189 93-292 22-221 (287)
347 TIGR02633 xylG D-xylose ABC tr 100.0 2.9E-34 6.2E-39 319.7 23.6 200 349-557 8-228 (500)
348 TIGR01186 proV glycine betaine 100.0 6.4E-35 1.4E-39 310.0 17.4 189 93-292 8-206 (363)
349 PRK14255 phosphate ABC transpo 100.0 6.4E-34 1.4E-38 289.4 23.9 201 349-560 12-237 (252)
350 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-34 3.2E-39 285.0 18.6 193 81-289 2-206 (206)
351 TIGR01187 potA spermidine/putr 100.0 1.3E-34 2.9E-39 304.9 19.5 180 379-560 1-191 (325)
352 PRK14265 phosphate ABC transpo 100.0 5.1E-34 1.1E-38 293.8 23.4 203 349-560 27-259 (274)
353 PRK14271 phosphate ABC transpo 100.0 3.9E-34 8.5E-39 294.9 22.4 204 345-560 25-252 (276)
354 PRK09452 potA putrescine/sperm 100.0 1.1E-34 2.4E-39 309.9 18.9 200 69-292 14-221 (375)
355 cd03297 ABC_ModC_molybdenum_tr 100.0 1.3E-34 2.7E-39 287.5 17.8 192 82-291 5-207 (214)
356 COG3840 ThiQ ABC-type thiamine 100.0 2E-34 4.4E-39 268.5 17.9 194 81-295 5-209 (231)
357 PRK13652 cbiO cobalt transport 100.0 1.2E-34 2.7E-39 298.8 18.4 195 83-292 9-214 (277)
358 cd03223 ABCD_peroxisomal_ALDP 100.0 3.1E-34 6.8E-39 273.7 19.8 157 349-544 7-163 (166)
359 PRK13636 cbiO cobalt transport 100.0 1.5E-34 3.3E-39 299.0 19.0 201 69-292 5-218 (283)
360 PRK13646 cbiO cobalt transport 100.0 1.6E-34 3.4E-39 299.4 19.1 189 93-292 22-222 (286)
361 PRK13650 cbiO cobalt transport 100.0 1.6E-34 3.4E-39 298.3 18.9 199 69-292 4-216 (279)
362 TIGR03411 urea_trans_UrtD urea 100.0 2.8E-34 6.1E-39 290.2 20.3 201 69-291 2-217 (242)
363 PRK14236 phosphate transporter 100.0 5.3E-34 1.1E-38 293.4 22.7 200 349-559 32-256 (272)
364 PRK11231 fecE iron-dicitrate t 100.0 2.1E-34 4.4E-39 293.6 19.4 195 83-291 8-213 (255)
365 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-34 1.1E-38 283.8 21.7 185 349-544 7-217 (218)
366 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.3E-34 9.3E-39 288.1 21.3 198 349-559 7-226 (238)
367 TIGR03522 GldA_ABC_ATP gliding 100.0 1.6E-34 3.5E-39 301.3 18.9 192 82-292 7-208 (301)
368 cd03253 ABCC_ATM1_transporter 100.0 5.3E-34 1.2E-38 287.0 21.9 198 349-559 7-224 (236)
369 PRK11124 artP arginine transpo 100.0 2.9E-34 6.2E-39 290.2 19.9 195 83-291 8-216 (242)
370 PRK13639 cbiO cobalt transport 100.0 1.9E-34 4.1E-39 297.1 18.8 196 83-291 7-212 (275)
371 CHL00131 ycf16 sulfate ABC tra 100.0 7.9E-34 1.7E-38 288.6 23.1 198 349-555 14-237 (252)
372 PRK13631 cbiO cobalt transport 100.0 2E-34 4.4E-39 302.5 19.3 187 93-292 41-252 (320)
373 cd03248 ABCC_TAP TAP, the Tran 100.0 2.1E-34 4.6E-39 288.1 18.6 187 349-544 18-224 (226)
374 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-34 5.3E-39 278.0 18.4 168 82-291 4-173 (180)
375 PRK14257 phosphate ABC transpo 100.0 8.7E-34 1.9E-38 298.7 24.2 202 349-560 87-314 (329)
376 PRK13540 cytochrome c biogenes 100.0 3.5E-34 7.7E-39 281.4 19.8 182 349-539 8-197 (200)
377 cd03257 ABC_NikE_OppD_transpor 100.0 2.5E-34 5.4E-39 287.7 19.0 198 83-291 7-221 (228)
378 PRK10895 lipopolysaccharide AB 100.0 2.8E-34 6.1E-39 290.1 19.2 203 69-292 3-213 (241)
379 PRK11022 dppD dipeptide transp 100.0 2E-34 4.4E-39 303.4 18.9 205 69-292 3-230 (326)
380 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.6E-34 5.6E-39 289.5 18.8 193 83-291 7-207 (236)
381 COG4619 ABC-type uncharacteriz 100.0 1.6E-34 3.5E-39 265.7 15.4 182 356-543 16-209 (223)
382 PRK10575 iron-hydroxamate tran 100.0 3.4E-34 7.4E-39 293.7 19.5 202 69-292 11-224 (265)
383 cd03246 ABCC_Protease_Secretio 100.0 5.1E-34 1.1E-38 273.9 19.5 155 349-544 7-171 (173)
384 PRK14261 phosphate ABC transpo 100.0 9.2E-34 2E-38 288.5 22.5 200 349-559 13-237 (253)
385 TIGR00972 3a0107s01c2 phosphat 100.0 5.2E-34 1.1E-38 289.3 20.4 194 83-291 7-218 (247)
386 PRK09580 sufC cysteine desulfu 100.0 1.1E-33 2.4E-38 286.8 22.8 199 349-556 8-232 (248)
387 PRK11607 potG putrescine trans 100.0 1.5E-34 3.2E-39 309.3 17.3 199 69-291 19-225 (377)
388 TIGR02142 modC_ABC molybdenum 100.0 1.1E-34 2.4E-39 309.0 16.1 197 82-292 4-208 (354)
389 PRK11300 livG leucine/isoleuci 100.0 2.8E-34 6.1E-39 292.4 18.4 203 69-292 5-230 (255)
390 PRK13635 cbiO cobalt transport 100.0 4.6E-34 1E-38 294.8 20.2 199 69-292 5-216 (279)
391 cd03250 ABCC_MRP_domain1 Domai 100.0 8.3E-34 1.8E-38 279.5 21.1 181 349-544 7-203 (204)
392 PRK11308 dppF dipeptide transp 100.0 5.3E-34 1.1E-38 300.3 21.0 213 69-292 5-231 (327)
393 PRK13649 cbiO cobalt transport 100.0 2.5E-34 5.5E-39 297.0 18.2 187 93-292 22-221 (280)
394 COG1123 ATPase components of v 100.0 4.4E-34 9.4E-39 309.9 20.6 198 357-561 23-246 (539)
395 PRK14263 phosphate ABC transpo 100.0 1.5E-33 3.3E-38 288.2 23.4 202 349-559 15-245 (261)
396 PRK13545 tagH teichoic acids e 100.0 9.7E-34 2.1E-38 308.4 23.0 204 349-564 28-237 (549)
397 PRK10253 iron-enterobactin tra 100.0 6.5E-34 1.4E-38 291.6 20.4 203 68-292 6-220 (265)
398 COG4988 CydD ABC-type transpor 100.0 6E-34 1.3E-38 307.7 21.1 205 346-564 325-548 (559)
399 TIGR03410 urea_trans_UrtE urea 100.0 2.9E-34 6.4E-39 287.8 17.5 198 82-292 5-208 (230)
400 PRK10771 thiQ thiamine transpo 100.0 3.9E-34 8.5E-39 287.5 18.4 177 100-291 22-205 (232)
401 PRK15056 manganese/iron transp 100.0 5.2E-34 1.1E-38 293.4 19.6 194 83-292 12-218 (272)
402 TIGR03873 F420-0_ABC_ATP propo 100.0 5.1E-34 1.1E-38 290.9 19.4 196 82-291 6-212 (256)
403 PRK14246 phosphate ABC transpo 100.0 1.8E-33 4E-38 287.0 23.2 202 349-560 17-242 (257)
404 COG0444 DppD ABC-type dipeptid 100.0 2.8E-34 6E-39 292.0 16.9 211 70-292 2-230 (316)
405 TIGR02769 nickel_nikE nickel i 100.0 5.7E-34 1.2E-38 292.0 19.2 190 92-292 25-227 (265)
406 cd03244 ABCC_MRP_domain2 Domai 100.0 1.3E-33 2.7E-38 281.5 21.1 185 349-545 9-214 (221)
407 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.4E-33 2.9E-38 290.1 21.6 197 349-560 9-226 (275)
408 PRK10619 histidine/lysine/argi 100.0 1.2E-33 2.5E-38 288.4 20.9 204 68-291 4-227 (257)
409 TIGR03005 ectoine_ehuA ectoine 100.0 7.3E-34 1.6E-38 289.0 19.2 199 82-292 5-223 (252)
410 cd03215 ABC_Carb_Monos_II This 100.0 1.1E-33 2.3E-38 273.9 19.5 153 358-544 15-180 (182)
411 PRK13548 hmuV hemin importer A 100.0 9.6E-34 2.1E-38 289.3 20.1 192 83-291 8-216 (258)
412 PRK15093 antimicrobial peptide 100.0 8.5E-34 1.8E-38 299.4 20.2 205 69-292 3-235 (330)
413 PRK13644 cbiO cobalt transport 100.0 6E-34 1.3E-38 293.2 18.4 193 83-292 7-211 (274)
414 PRK15064 ABC transporter ATP-b 100.0 1.2E-33 2.7E-38 316.7 22.5 198 349-559 8-242 (530)
415 cd03233 ABC_PDR_domain1 The pl 100.0 1.6E-33 3.4E-38 277.4 20.5 173 349-545 10-197 (202)
416 COG4608 AppF ABC-type oligopep 100.0 4.7E-34 1E-38 284.7 16.9 178 68-291 3-185 (268)
417 TIGR01184 ntrCD nitrate transp 100.0 7.2E-34 1.6E-38 285.3 18.4 174 101-292 9-191 (230)
418 PRK11819 putative ABC transpor 100.0 1.3E-33 2.8E-38 318.0 22.6 195 349-557 13-248 (556)
419 PRK14268 phosphate ABC transpo 100.0 8.8E-34 1.9E-38 289.5 19.3 203 69-292 12-229 (258)
420 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.7E-34 1.7E-38 284.0 18.5 188 83-291 28-217 (224)
421 PRK11144 modC molybdate transp 100.0 4E-34 8.7E-39 304.3 17.4 193 82-291 5-204 (352)
422 PRK13645 cbiO cobalt transport 100.0 5.3E-34 1.1E-38 295.9 17.8 203 69-292 6-227 (289)
423 TIGR01978 sufC FeS assembly AT 100.0 9.3E-34 2E-38 286.4 19.1 197 82-291 5-220 (243)
424 PRK11614 livF leucine/isoleuci 100.0 8.6E-34 1.9E-38 285.8 18.7 202 69-291 5-212 (237)
425 TIGR01277 thiQ thiamine ABC tr 100.0 7.5E-34 1.6E-38 281.8 17.9 177 100-291 21-204 (213)
426 PRK14242 phosphate transporter 100.0 7.2E-34 1.6E-38 289.2 18.2 202 69-291 6-223 (253)
427 PRK13538 cytochrome c biogenes 100.0 8.8E-34 1.9E-38 279.5 18.3 189 83-289 7-202 (204)
428 TIGR03415 ABC_choXWV_ATP choli 100.0 4.5E-34 9.8E-39 304.9 17.3 199 82-292 29-241 (382)
429 PRK14252 phosphate ABC transpo 100.0 3.2E-33 6.9E-38 286.5 22.8 200 349-559 23-249 (265)
430 PRK14266 phosphate ABC transpo 100.0 2.7E-33 5.8E-38 284.5 22.0 201 349-560 10-235 (250)
431 PRK09473 oppD oligopeptide tra 100.0 1.6E-33 3.4E-38 297.0 20.9 208 69-292 12-238 (330)
432 COG4598 HisP ABC-type histidin 100.0 6.6E-34 1.4E-38 264.3 15.8 202 69-291 6-227 (256)
433 cd03213 ABCG_EPDR ABCG transpo 100.0 1.8E-33 4E-38 275.1 19.8 166 349-545 10-189 (194)
434 COG4559 ABC-type hemin transpo 100.0 1.3E-33 2.7E-38 269.3 18.0 195 83-291 7-216 (259)
435 PRK14264 phosphate ABC transpo 100.0 2.9E-33 6.3E-38 292.4 22.5 200 349-559 52-289 (305)
436 PRK10247 putative ABC transpor 100.0 1.7E-33 3.8E-38 281.6 19.9 199 69-290 7-211 (225)
437 PRK13543 cytochrome c biogenes 100.0 8.4E-34 1.8E-38 281.7 17.4 194 69-290 11-211 (214)
438 cd03231 ABC_CcmA_heme_exporter 100.0 8.1E-34 1.7E-38 279.1 17.0 190 82-289 5-198 (201)
439 TIGR02324 CP_lyasePhnL phospho 100.0 1.8E-33 3.8E-38 281.1 19.6 189 92-289 22-222 (224)
440 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-33 3.2E-38 280.7 18.9 195 70-291 3-213 (220)
441 cd03267 ABC_NatA_like Similar 100.0 8.9E-34 1.9E-38 285.7 17.4 192 85-291 29-229 (236)
442 PRK15112 antimicrobial peptide 100.0 9.4E-34 2E-38 290.8 17.8 186 93-291 28-225 (267)
443 PRK13541 cytochrome c biogenes 100.0 2E-33 4.3E-38 275.0 19.1 180 349-538 8-192 (195)
444 PRK09984 phosphonate/organopho 100.0 2.2E-33 4.8E-38 287.1 20.2 204 69-292 4-229 (262)
445 PRK11701 phnK phosphonate C-P 100.0 1.7E-33 3.7E-38 287.4 19.1 204 69-292 6-228 (258)
446 PRK09544 znuC high-affinity zi 100.0 9.7E-34 2.1E-38 288.0 17.1 190 69-292 4-197 (251)
447 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.5E-33 7.6E-38 275.7 20.6 178 349-545 13-200 (207)
448 cd03228 ABCC_MRP_Like The MRP 100.0 2.3E-33 4.9E-38 269.0 18.5 154 349-544 7-170 (171)
449 cd03247 ABCC_cytochrome_bd The 100.0 2.3E-33 5.1E-38 270.6 18.6 158 349-545 7-173 (178)
450 PRK14273 phosphate ABC transpo 100.0 2.9E-33 6.2E-38 285.0 20.0 201 69-292 7-225 (254)
451 COG4608 AppF ABC-type oligopep 100.0 1.1E-33 2.4E-38 282.0 16.6 173 357-560 27-200 (268)
452 PRK14235 phosphate transporter 100.0 1.8E-33 3.8E-38 288.7 18.6 202 69-291 19-237 (267)
453 COG1137 YhbG ABC-type (unclass 100.0 1.5E-34 3.2E-39 273.3 9.7 198 69-291 4-214 (243)
454 TIGR03740 galliderm_ABC gallid 100.0 8.7E-34 1.9E-38 283.2 15.9 189 82-291 5-199 (223)
455 cd03216 ABC_Carb_Monos_I This 100.0 4.1E-33 8.8E-38 265.2 19.7 153 349-545 7-159 (163)
456 PRK13633 cobalt transporter AT 100.0 1.7E-33 3.7E-38 290.8 18.3 203 69-292 4-220 (280)
457 cd03248 ABCC_TAP TAP, the Tran 100.0 2.1E-33 4.6E-38 280.9 18.2 196 69-291 11-223 (226)
458 PRK14267 phosphate ABC transpo 100.0 2.2E-33 4.8E-38 285.6 18.7 200 69-291 4-223 (253)
459 cd03300 ABC_PotA_N PotA is an 100.0 1.8E-33 3.9E-38 282.7 17.7 192 82-292 5-207 (232)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.7E-33 7.9E-38 314.2 22.2 198 349-559 11-248 (552)
461 TIGR02323 CP_lyasePhnK phospho 100.0 3E-33 6.5E-38 284.6 19.5 208 69-292 3-225 (253)
462 PRK14269 phosphate ABC transpo 100.0 4.7E-33 1E-37 282.1 20.4 195 83-292 8-217 (246)
463 cd03232 ABC_PDR_domain2 The pl 100.0 5.2E-33 1.1E-37 271.5 19.9 164 349-543 10-184 (192)
464 COG0488 Uup ATPase components 100.0 2.1E-33 4.6E-38 309.6 19.2 184 349-545 10-227 (530)
465 PRK14247 phosphate ABC transpo 100.0 3.4E-33 7.4E-38 283.7 19.2 200 69-291 3-220 (250)
466 COG4161 ArtP ABC-type arginine 100.0 1.9E-33 4E-38 257.1 15.0 192 349-547 9-220 (242)
467 TIGR01166 cbiO cobalt transpor 100.0 1.3E-33 2.8E-38 275.0 14.9 172 94-278 8-189 (190)
468 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.2E-33 1.6E-37 272.2 20.2 164 349-546 7-183 (200)
469 PRK15177 Vi polysaccharide exp 100.0 5.5E-33 1.2E-37 275.7 19.4 190 358-559 2-192 (213)
470 PRK14244 phosphate ABC transpo 100.0 4.3E-33 9.3E-38 283.2 19.0 199 81-292 9-224 (251)
471 cd03252 ABCC_Hemolysin The ABC 100.0 3.6E-33 7.9E-38 281.2 18.3 192 82-292 5-212 (237)
472 PRK13547 hmuV hemin importer A 100.0 4.6E-33 9.9E-38 286.2 19.3 196 83-292 7-231 (272)
473 COG4152 ABC-type uncharacteriz 100.0 1.4E-33 3E-38 274.0 14.4 200 69-297 2-212 (300)
474 PRK14241 phosphate transporter 100.0 3E-33 6.6E-38 285.5 17.8 194 82-290 9-221 (258)
475 PRK13640 cbiO cobalt transport 100.0 5.6E-33 1.2E-37 287.2 19.9 199 69-292 5-219 (282)
476 TIGR01257 rim_protein retinal- 100.0 1.1E-32 2.4E-37 337.8 25.7 215 349-575 935-1162(2272)
477 cd03254 ABCC_Glucan_exporter_l 100.0 3.4E-33 7.5E-38 279.8 17.5 191 83-292 8-213 (229)
478 PRK10744 pstB phosphate transp 100.0 6.4E-33 1.4E-37 283.5 19.8 202 68-292 12-231 (260)
479 PRK14248 phosphate ABC transpo 100.0 3.8E-33 8.2E-38 286.4 18.2 203 69-292 21-239 (268)
480 PRK13632 cbiO cobalt transport 100.0 3.9E-33 8.5E-38 286.8 18.3 200 68-292 6-218 (271)
481 PRK00635 excinuclease ABC subu 100.0 9.1E-32 2E-36 324.8 32.6 328 200-561 1370-1798(1809)
482 PRK13648 cbiO cobalt transport 100.0 4.7E-33 1E-37 285.9 18.4 202 69-292 7-218 (269)
483 PRK10419 nikE nickel transport 100.0 8.7E-33 1.9E-37 283.8 20.3 190 92-292 26-228 (268)
484 PRK10636 putative ABC transpor 100.0 1.1E-32 2.3E-37 314.5 23.0 194 349-556 8-233 (638)
485 cd03299 ABC_ModC_like Archeal 100.0 3.9E-33 8.3E-38 280.9 17.2 193 82-291 5-205 (235)
486 TIGR02982 heterocyst_DevA ABC 100.0 6.5E-33 1.4E-37 276.4 18.6 198 82-291 6-216 (220)
487 PRK14259 phosphate ABC transpo 100.0 9.3E-33 2E-37 283.7 20.2 196 69-291 13-228 (269)
488 COG1129 MglA ABC-type sugar tr 100.0 1E-32 2.2E-37 297.5 21.3 206 349-561 15-242 (500)
489 PRK14245 phosphate ABC transpo 100.0 8.6E-33 1.9E-37 280.8 19.5 203 69-292 3-221 (250)
490 PRK13642 cbiO cobalt transport 100.0 6.5E-33 1.4E-37 286.0 18.7 199 69-292 4-216 (277)
491 PRK14270 phosphate ABC transpo 100.0 7.3E-33 1.6E-37 281.5 18.8 197 83-292 10-222 (251)
492 COG0178 UvrA Excinuclease ATPa 100.0 6.8E-32 1.5E-36 297.7 27.6 334 201-560 465-920 (935)
493 cd03288 ABCC_SUR2 The SUR doma 100.0 1.7E-32 3.6E-37 280.0 21.3 198 349-560 26-244 (257)
494 TIGR03771 anch_rpt_ABC anchore 100.0 6.3E-33 1.4E-37 277.2 17.8 174 101-292 4-189 (223)
495 PRK14251 phosphate ABC transpo 100.0 7.1E-33 1.5E-37 281.5 18.1 196 69-291 4-221 (251)
496 COG4604 CeuD ABC-type enteroch 100.0 2E-33 4.3E-38 264.9 12.9 198 69-291 1-211 (252)
497 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-32 2.8E-37 317.5 22.4 199 345-560 455-674 (686)
498 PRK11176 lipid transporter ATP 100.0 9.6E-33 2.1E-37 313.0 20.9 201 349-561 348-569 (582)
499 cd03244 ABCC_MRP_domain2 Domai 100.0 8.1E-33 1.8E-37 275.6 17.9 190 83-291 8-212 (221)
500 PRK10418 nikD nickel transport 100.0 8.4E-33 1.8E-37 281.6 18.3 201 66-292 2-217 (254)
No 1
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=3.6e-181 Score=1391.70 Aligned_cols=591 Identities=56% Similarity=0.981 Sum_probs=571.2
Q ss_pred CceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccCCCc
Q 040300 4 RLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDT 83 (605)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~~~~ 83 (605)
+.|||||||+|+||||||++||++|||+||||++||+++++++||+|||+||||||||||||||+||+|+|||++|++++
T Consensus 1 ~~~riAvvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP~eLe~e~ 80 (591)
T COG1245 1 KLMRIAVVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKPVISEELCIGCGICVKKCPFDAISIVNLPEELEEEV 80 (591)
T ss_pred CCceEEEeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCceeEhhhhccchhhhccCCcceEEEecCchhhcccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHH
Q 040300 84 THRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163 (605)
Q Consensus 84 ~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 163 (605)
+||||.|+|+|++||+|++|+++||+|+||.||||.+|||+|.++||+|+.+.+|+|++++.+|+|+++|+||.++++++
T Consensus 81 vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~ 160 (591)
T COG1245 81 VHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGE 160 (591)
T ss_pred eeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 040300 164 LKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243 (605)
Q Consensus 164 ~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP 243 (605)
++++.||||++.+|+.++|++.+++++.+++.+.+++++.|+|+++++|.+++|||||+||+|||+|+++++|+|+||||
T Consensus 161 ~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 161 LRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred cceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCcccc
Q 040300 244 SSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLR 323 (605)
Q Consensus 244 ts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~ 323 (605)
|||||+.+|..++++|++|++.+++||+|+|||+.+|+++|.|+++||.|++||+++.|+++|+|||.|+.||+|+||+|
T Consensus 241 sSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R 320 (591)
T COG1245 241 SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLKGYLPEENVR 320 (591)
T ss_pred cccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCccceEeccchHHHHHHHHHHhccCchhccc
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 324 FRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 324 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
||++++.|+..++.+. . .... .++|+++.+.+++|.|++.+|+++.||+++++||||.|||||+++|||.++|++|
T Consensus 321 ~R~~~I~F~~~~~~~~-~--~~~~-lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg 396 (591)
T COG1245 321 FRPEEIEFEEKPPRDD-K--ARDT-LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396 (591)
T ss_pred ccccceeeeccCcccc-c--ccce-eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCC
Confidence 9999999987765443 1 1134 7899999999999999999999999999999999999999999999999999998
Q ss_pred eeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 404 EDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 404 ~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
. ....++||+||++.+.++.||.+++....+..+.+.++..+++++|+|++++++++.+|||||+||||||.||+
T Consensus 397 ~-----~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 397 S-----EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS 471 (591)
T ss_pred C-----CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhc
Confidence 6 34568999999999999999999987766555777889999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~ 563 (605)
+++||||||||+|+||+++|..+.++|++++.+.++|+++|.||+.++++++||++||+|+|++.+.+.+|.+++++||.
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~ 551 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNR 551 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecceEEEecCCCCcceeecCCCCCcHhhhhcCCcccc
Q 040300 564 FLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603 (605)
Q Consensus 564 ~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~ 603 (605)
||+++++|||||++|+|||+||+||++|||||+.|+|||+
T Consensus 552 FLk~l~vTFRRD~~t~RPRvNK~gS~lDreQKe~g~Yyy~ 591 (591)
T COG1245 552 FLKNLGVTFRRDPETGRPRVNKPGSQLDREQKERGEYYYA 591 (591)
T ss_pred HHHHcCcEEecCcccCCCCcCCCcchhhHHHHhccCcccC
Confidence 9999999999999999999999999999999999999995
No 2
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=100.00 E-value=7.2e-151 Score=1156.46 Aligned_cols=592 Identities=79% Similarity=1.277 Sum_probs=572.6
Q ss_pred CCCCceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccC
Q 040300 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLD 80 (605)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~ 80 (605)
|+|+++|||||+.|+||||||+|||+|.|||||+|++||+|+++ |+|||+||||||||||||||+||+|+|||.+++
T Consensus 1 ~~~~~triaiv~~d~ckpk~c~~eck~~cpv~~~gk~ci~V~~~---~~ise~lCigcgicvkkcpf~ai~iinlp~nl~ 77 (592)
T KOG0063|consen 1 MSDKLTRIAIVSEDKCKPKKCRQECKKSCPVVRTGKLCIEVTPT---AFISEELCIGCGICVKKCPFEAIQIINLPTNLE 77 (592)
T ss_pred CCCccceEEEeeccccCchHHHHHHHhcCCcccccceEEEEcCc---chhhHhhhccccceeeccCcceEEecCCchhHh
Confidence 78999999999999999999999999999999999999999886 999999999999999999999999999999999
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|||+.|+|++|+||.|++|+++|+||.||.||||.+|+|+|.++|+.|.+..+|+|++++.+|+|+++|+||++.+
T Consensus 78 ~etthry~~n~fKlhrlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~l 157 (592)
T KOG0063|consen 78 KETTHRYSANSFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157 (592)
T ss_pred hhhhhhhcccceeeccCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
+++++...+|||++++|+..+++++..+...+++....++++.+.|.++++|.+.+|||||.||++||.+.++++|+|+|
T Consensus 158 e~~lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 158 EDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred cccccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEe
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCc
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTE 320 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e 320 (605)
|||++|||+++|...+..|++|.....+||+|+||++++++++|.|++|||.|++||+++.|+++++++|.|++|+.|+|
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniFl~g~ipte 317 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGLIPTE 317 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecCCccceEEEeccchhhhhhhhhhccCCcc
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 321 NLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 321 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
|+|||.+.+.|.+++.... . .+.. .++||++++.+++|.|.+..|++.++|++..+|.||.|||||+++++|.++|
T Consensus 318 n~rfR~~~l~f~~~~~~~~--e-k~~~-~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~p 393 (592)
T KOG0063|consen 318 NLRFRPECLVFLASDLSSE--D-RRTG-RYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKP 393 (592)
T ss_pred cccccchhheeeeccccch--h-hhhh-eeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCC
Confidence 9999999999988764433 1 2333 8999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHH
Q 040300 401 DSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 401 ~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~ 480 (605)
++|. +++..+++|+||.+++.++.||+++++..++..+.+++++.+++++|.++++.|+.+.+|||||+||||||.
T Consensus 394 d~~~----e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~K 469 (592)
T KOG0063|consen 394 DEGG----EIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALAL 469 (592)
T ss_pred CccC----cccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHH
Confidence 9874 478889999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|.+.+++||.|||+++||.++|....+.+++++.+.++|.++|.||+.++.++|||++||+|.|.....+.+|+++.++
T Consensus 470 OGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~g 549 (592)
T KOG0063|consen 470 CLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAG 549 (592)
T ss_pred hcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999988899999999999
Q ss_pred ccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCcccc
Q 040300 561 MNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603 (605)
Q Consensus 561 ~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~ 603 (605)
||.|++.+++||||||.+.|||+||.+|.+|+|||+.|.|||+
T Consensus 550 mN~fl~~l~itfRrd~n~~rprink~~s~~d~~qK~~g~~ffl 592 (592)
T KOG0063|consen 550 MNRFLKNLDITFRRDPNNFRPRINKLDSQKDVEQKKSGQYFFL 592 (592)
T ss_pred hHHHHhhcceeeccCCcccccccchhhHHHHHHHhhcCCcccC
Confidence 9999999999999999999999999999999999999999985
No 3
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.9e-147 Score=1234.67 Aligned_cols=590 Identities=50% Similarity=0.905 Sum_probs=523.0
Q ss_pred ceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccCCCce
Q 040300 5 LTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTT 84 (605)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~~~~~ 84 (605)
.+||||||+|+|||+||++||++|||+||||++||++++++++|+|||+||||||||||||||+||+|+|||++|+++++
T Consensus 1 ~~~~~~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~~~~~~~~ 80 (590)
T PRK13409 1 MMRIAVVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVKKCPFDAISIVNLPEELEEEPV 80 (590)
T ss_pred CceEEEeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceeeHhhccccccccccCCcceEEEeeCchhhccCce
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHH
Q 040300 85 HRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNL 164 (605)
Q Consensus 85 ~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 164 (605)
|+||.|+|.|+++|.+++|+++||+|+||||||||+|+|+|+++|+.|++..++.|++++.+|+|.++++++..+.....
T Consensus 81 ~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 160 (590)
T PRK13409 81 HRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEI 160 (590)
T ss_pred EEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999989999999999999999988765443344
Q ss_pred HHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 040300 165 KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244 (605)
Q Consensus 165 ~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt 244 (605)
+..+++||+++.|..+.+++.+.+...+.+++++++++.++|.+.+++++.+|||||+|||+||+||+++|++|||||||
T Consensus 161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPt 240 (590)
T PRK13409 161 KVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240 (590)
T ss_pred ceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 55678999998887766777777665556678899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCccccc
Q 040300 245 SYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRF 324 (605)
Q Consensus 245 s~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~~ 324 (605)
|+||+.++.+++++|+++.+ |+|||+||||+++++++||+|++|+|+++.||+++.+.+.+++++.|+.++.+.+++++
T Consensus 241 s~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~~~~~~~e~~~~ 319 (590)
T PRK13409 241 SYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGEPGAYGVVSKPKGVRVGINEYLKGYLPEENMRI 319 (590)
T ss_pred CCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecchhHHHHhHHHHHHhcchhhhhhc
Confidence 99999999999999999988 99999999999999999999999999999999988888888889999888887777776
Q ss_pred ccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 325 RDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 325 r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
+..+..++...+... . .... .+++.+.++.++++.|+..++++++||+++|+||||||||||+|+|+|+++|++|+
T Consensus 320 ~~~~~~~~~~~~~~~-~--~~~~-~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~ 395 (590)
T PRK13409 320 RPEPIEFEERPPRDE-S--ERET-LVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395 (590)
T ss_pred cccCcceecCCCccc-c--CCce-EEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 644433332211100 0 0111 34444444445555566667777777999999999999999999999999999999
Q ss_pred eeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 405 DSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 405 i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+.. . .+++|+||+....+..||.+++.... ..+.....+.++++.+++.+..++++.+|||||||||+|||||++
T Consensus 396 I~~---~-~~i~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 396 VDP---E-LKISYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEE---e-eeEEEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 742 1 47999999987677889999875421 112233467889999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+|++|||||||+|||+.++..+.++|+++.++.|+|||+||||++++.++|||+++|+|+++..+.+.+|.++.++||.|
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~~~~~~~~~~~~~~~ 550 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRF 550 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeeecCCchhHHHHHHHH
Confidence 99999999999999999999999999999776789999999999999999999999999887777788899999999999
Q ss_pred ceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccC
Q 040300 565 LSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLD 604 (605)
Q Consensus 565 l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~ 604 (605)
++.+++|||||++++||||||++|++|||||++|+|||++
T Consensus 551 l~~~~i~~~~d~~~~~~~i~~~~s~~d~~q~~~~~~~~~~ 590 (590)
T PRK13409 551 LKELGITFRRDEETGRPRVNKPGSYLDREQKERGEYYYAD 590 (590)
T ss_pred HHHcCCEEEECCCCCCcCcCCCcchhhHHHHhcCCeeccC
Confidence 9999999999999999999999999999999999999974
No 4
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.1e-73 Score=611.39 Aligned_cols=459 Identities=24% Similarity=0.351 Sum_probs=327.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC----CceeeCCC-Ch--
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN----LGRFNNPP-DW-- 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~----~G~i~~~~-~~-- 140 (605)
.++|.||..+|... +.....+.+++ .+.+||++||||++||||||++++|.|+++++ .|++.... +.
T Consensus 5 lL~V~nL~v~~~~~-----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATD-----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecC-----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence 79999998876533 22223455555 35899999999999999999999999999988 68774211 10
Q ss_pred --hhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc-hhhhh------cCchHHHHHHHHHHhhcCCchhh-
Q 040300 141 --QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG-NVGQV------LDQKDERDMKADLCTDLDLNQVI- 210 (605)
Q Consensus 141 --~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~v~~~------l~~~~~~~~~~~~l~~l~L~~~~- 210 (605)
......++|..+...|+... ..+. |...-+ .+.+. ....+.++++.++++.+||.+-.
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~-----~sln-------P~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~ 147 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPM-----TSLN-------PVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER 147 (539)
T ss_pred CCHHHHHHhccccEEEEecCch-----hhcC-------chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh
Confidence 11123344443322221100 0011 111001 11111 12345678899999999997644
Q ss_pred -cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEE
Q 040300 211 -DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 211 -dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~v 288 (605)
++++++|||||||||.||+||+.+|++||+||||++||+..+.+++++|++|.++ |.++|+||||++++.++||+|+|
T Consensus 148 ~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~V 227 (539)
T COG1123 148 RDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVV 227 (539)
T ss_pred hccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEE
Confidence 4599999999999999999999999999999999999999999999999999864 99999999999999999999999
Q ss_pred EeCcc-cccc-------ccccchhhHHHHHhhhcCCCCCcccc-cccccccccccCCCcchhhhhhhheeeecCC-----
Q 040300 289 LYGKP-GAYG-------VVTLPFSVREGINIFLAGFVPTENLR-FRDESLTFRVAETPQESAEEIETYARYKYPT----- 354 (605)
Q Consensus 289 l~g~~-~~~g-------~~~~~~~~r~~i~~~l~g~~~~e~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----- 354 (605)
||.+. ...| ....||+.. .+. ..|...-. ....+..+.. ..++ +...++. ...|..
T Consensus 228 m~~G~iVE~G~~~~i~~~p~hpYT~~-Ll~-----a~p~~~~~~~~~~~~~~~~--~~~~-ll~V~~l-~k~y~~~~~~~ 297 (539)
T COG1123 228 MYKGEIVETGPTEEILSNPQHPYTRG-LLA-----AVPRLGDEKIIRLPRRGPL--RAEP-LLSVRNL-SKRYGSRKGLF 297 (539)
T ss_pred EECCEEEEecCHHHHHhccCCcccHH-HHh-----hCCCccccccccccccccc--ccCc-eeEeeee-eeeeccccccc
Confidence 98542 1222 122333321 111 11111000 0000000000 0111 1112222 334431
Q ss_pred -----ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-------C--cceeEee
Q 040300 355 -----MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-------P--EFNVSYK 418 (605)
Q Consensus 355 -----~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-------~--~~~i~y~ 418 (605)
..++++++||++.+| |++||+|++|||||||.|+|+|+++|++|.+. +.+. . ..++-++
T Consensus 298 ~~~~~~~~Av~~VSf~l~~G-----E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~Qmv 372 (539)
T COG1123 298 VRERGEVKAVDDVSFDLREG-----ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372 (539)
T ss_pred cccccceeeeeeeeeEecCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEE
Confidence 135688999999988 79999999999999999999999999999875 2211 0 1246677
Q ss_pred cCcCC--CCCcCcHHHHHHhhhccC--C---CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 419 PQKIS--PKFQSTVRHLLHQKIRDS--Y---THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 419 ~q~~~--~~~~~tv~~~~~~~~~~~--~---~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+|++. ....+||.+.+....... . .....+.++++..++.. +++++|++|||||||||+|||||+.+|++++
T Consensus 373 FQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli 452 (539)
T COG1123 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI 452 (539)
T ss_pred EeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEE
Confidence 77753 445679988775432211 1 11235778899999985 8999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||||++||+..+..+.++|+++.++.|.|.|+||||+.++.++||||+||..+..+ ..|+.+.+++..
T Consensus 453 ~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV--E~G~~~~v~~~p 521 (539)
T COG1123 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV--EEGPTEKVFENP 521 (539)
T ss_pred ecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE--EeCCHHHHhcCC
Confidence 999999999999999999999999889999999999999999999999999966554 457888887763
No 5
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-72 Score=621.59 Aligned_cols=441 Identities=21% Similarity=0.289 Sum_probs=307.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ +|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++..
T Consensus 5 ~l~~~~l~~--------~~~~~-~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~----------- 64 (510)
T PRK09700 5 YISMAGIGK--------SFGPV-HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI----------- 64 (510)
T ss_pred eEEEeeeEE--------EcCCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEE-----------
Confidence 577777655 55432 2345555 35799999999999999999999999999999999842
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh-------h-----cCchHHHHHHHHHHhhcCCchhhcccC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------V-----LDQKDERDMKADLCTDLDLNQVIDRNV 214 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v 214 (605)
.|.++........ ......+.+|.....+. .+...+.. . +.......++.++++.+||.+.+++++
T Consensus 65 ~g~~i~~~~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 143 (510)
T PRK09700 65 NNINYNKLDHKLA-AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV 143 (510)
T ss_pred CCEECCCCCHHHH-HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch
Confidence 1211111000000 00011122222111110 00011100 0 011233467889999999998899999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG 294 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~ 294 (605)
.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++|+|||+||||++++..+||++++|+.+..
T Consensus 144 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999987799999999999999999999999975322
Q ss_pred cc-cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeec
Q 040300 295 AY-GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTD 373 (605)
Q Consensus 295 ~~-g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~ 373 (605)
.+ |.... ....+.+..+....... ++.. ..........+.....++. ++.|. ..+++++|++.+|
T Consensus 224 ~~~g~~~~-~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~l~~~~l-~~~~~---~~l~~isl~i~~G---- 289 (510)
T PRK09700 224 VCSGMVSD-VSNDDIVRLMVGRELQN---RFNA--MKENVSNLAHETVFEVRNV-TSRDR---KKVRDISFSVCRG---- 289 (510)
T ss_pred eeecchhh-CCHHHHHHHhcCCCccc---cccc--cccccccCCCCcEEEEeCc-cccCC---CcccceeEEEcCC----
Confidence 21 11110 00111111111100000 0000 0000000000101111222 33342 2588999999888
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcC---CCCCcCcHHHHHHhhhc-
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKI---SPKFQSTVRHLLHQKIR- 439 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~---~~~~~~tv~~~~~~~~~- 439 (605)
|+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+||+. ......|+.+++.....
T Consensus 290 -e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (510)
T PRK09700 290 -EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSL 368 (510)
T ss_pred -cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccc
Confidence 78999999999999999999999999999985 22221 12589999973 33345799987643210
Q ss_pred ------c--CC-CC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040300 440 ------D--SY-TH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506 (605)
Q Consensus 440 ------~--~~-~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l 506 (605)
. .. .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 448 (510)
T PRK09700 369 KDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448 (510)
T ss_pred ccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHH
Confidence 0 00 11 13457889999997 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
.++|+++.+ .|.|||+||||++++..+|||+++|+++..
T Consensus 449 ~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 487 (510)
T PRK09700 449 YKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRL 487 (510)
T ss_pred HHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 999999865 589999999999999999999999986543
No 6
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-71 Score=620.22 Aligned_cols=449 Identities=20% Similarity=0.250 Sum_probs=314.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC--CCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP--NLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~ 145 (605)
+|++.||. ++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++| +.|++..
T Consensus 5 ~l~~~nl~--------~~~~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~--------- 66 (506)
T PRK13549 5 LLEMKNIT--------KTFGGV-KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF--------- 66 (506)
T ss_pred eEEEeeeE--------EEeCCe-EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE---------
Confidence 57776654 466532 3455555 3579999999999999999999999999996 7998742
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh--------hcCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ--------VLDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~--------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++......... ....++.+|.....+. .+...+.. ........+++.++++.+++.+.+++++.+
T Consensus 67 --~g~~~~~~~~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (506)
T PRK13549 67 --EGEELQASNIRDTE-RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN 143 (506)
T ss_pred --CCEECCCCCHHHHH-HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhh
Confidence 22211100000000 0001222222111111 01111100 011122345788999999999889999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-c
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-A 295 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~ 295 (605)
|||||||||+||+||+.+|++||||||||+||+..+.++.++|+++.++|+|||+||||++++..+||++++|+.+.. .
T Consensus 144 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 144 LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999999999999999999999987799999999999999999999999975322 1
Q ss_pred ccccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC--ceeeeeeEEEEEeeceeec
Q 040300 296 YGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT--MVKTQGNFKLKVVEGEFTD 373 (605)
Q Consensus 296 ~g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~l~~~~l~v~~G~~~~ 373 (605)
.|.... ......+..+...... .. +.. ........ ....++. ++.|+. ....+++++|++.+|
T Consensus 224 ~~~~~~-~~~~~~~~~~~~~~~~-~~--~~~-----~~~~~~~~-~l~~~~l-~~~~~~~~~~~vl~~vsl~i~~G---- 288 (506)
T PRK13549 224 TRPAAG-MTEDDIITMMVGRELT-AL--YPR-----EPHTIGEV-ILEVRNL-TAWDPVNPHIKRVDDVSFSLRRG---- 288 (506)
T ss_pred eccccc-CCHHHHHHHhhCcCcc-cc--ccc-----cccCCCCc-eEEEecC-ccccccccccccccceeeEEcCC----
Confidence 121111 1111111111110000 00 000 00000111 1122333 666741 234688999999888
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC-CCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhhhc
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK-PDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQKIR 439 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~-p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~~~ 439 (605)
|+++|+||||||||||+|+|+|+++ |++|++. +..+. ...++|++|+.. .....|+.+++.....
T Consensus 289 -e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 367 (506)
T PRK13549 289 -EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAAL 367 (506)
T ss_pred -cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhh
Confidence 7899999999999999999999999 5999885 22221 134899999852 3345799987743211
Q ss_pred -c--C---CC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 440 -D--S---YT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 440 -~--~---~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
. . .. ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 447 (506)
T PRK13549 368 DRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL 447 (506)
T ss_pred hhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH
Confidence 0 0 01 123567899999996 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++
T Consensus 448 l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 492 (506)
T PRK13549 448 INQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKL--KGDLINHNL 492 (506)
T ss_pred HHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEeccccC
Confidence 999865 599999999999999999999999986543 244555554
No 7
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.5e-71 Score=619.66 Aligned_cols=449 Identities=20% Similarity=0.250 Sum_probs=311.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..|++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|++..
T Consensus 11 ~l~~~~l~--------~~~~~~-~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~----------- 70 (510)
T PRK15439 11 LLCARSIS--------KQYSGV-EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI----------- 70 (510)
T ss_pred eEEEEeEE--------EEeCCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------
Confidence 57776654 466543 2455555 35799999999999999999999999999999999842
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-----CchHHHHHHHHHHhhcCCchhhcccCCCCChHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-----DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGEL 222 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-----~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~ 222 (605)
.|..+........ .....++.+|.....+. .++.+.+ .....++++.++++.++|.+.+++++.+||||||
T Consensus 71 ~g~~~~~~~~~~~-~~~~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 146 (510)
T PRK15439 71 GGNPCARLTPAKA-HQLGIYLVPQEPLLFPN---LSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADR 146 (510)
T ss_pred CCEECCCCCHHHH-HhCCEEEEeccCccCCC---CcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHH
Confidence 2222211000000 00111222332221111 1222221 1123356788999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccc-ccccc
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAY-GVVTL 301 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~-g~~~~ 301 (605)
|||+||+||+.+|++|||||||++||+..+.++.++|++++++|+|||+||||++++..+||+|++|+.+...+ |....
T Consensus 147 qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 147 QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHH
Confidence 99999999999999999999999999999999999999998779999999999999999999999996432211 11100
Q ss_pred chhhHHHHHhhhcCCCCCcccccc-cccccccccCC---CcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEE
Q 040300 302 PFSVREGINIFLAGFVPTENLRFR-DESLTFRVAET---PQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQII 377 (605)
Q Consensus 302 ~~~~r~~i~~~l~g~~~~e~~~~r-~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii 377 (605)
....+..+.+.... ....++.. .....+..... ......... .++. ..+++++|++.+| |++
T Consensus 227 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~----~~l~~isl~i~~G-----e~~ 292 (510)
T PRK15439 227 -LSTDDIIQAITPAA-REKSLSASQKLWLELPGNRRQQAAGAPVLTVE---DLTG----EGFRNISLEVRAG-----EIL 292 (510)
T ss_pred -cCHHHHHHHHhCcc-ccccccccccccccccccccccCCCCceEEEe---CCCC----CCccceeEEEcCC-----cEE
Confidence 00111122111100 00000000 00000100000 000010011 1111 1378888888887 789
Q ss_pred EEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhh----hcc
Q 040300 378 VMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQK----IRD 440 (605)
Q Consensus 378 ~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~----~~~ 440 (605)
+|+||||||||||+|+|+|+++|++|++. +..+. ...++|+||+.. .....|+.+++... ...
T Consensus 293 ~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~ 372 (510)
T PRK15439 293 GLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGF 372 (510)
T ss_pred EEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhcc
Confidence 99999999999999999999999999885 22221 135899999742 33446887775321 000
Q ss_pred CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 441 SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 441 ~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
... ....+.++++.+++. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++..
T Consensus 373 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~- 451 (510)
T PRK15439 373 WIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA- 451 (510)
T ss_pred ccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-
Confidence 001 123467889999997 788999999999999999999999999999999999999999999999999999865
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
.|.|||+||||++++..+|||+++++++... ..++++++.
T Consensus 452 ~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~--~~~~~~~~~ 491 (510)
T PRK15439 452 QNVAVLFISSDLEEIEQMADRVLVMHQGEIS--GALTGAAIN 491 (510)
T ss_pred CCCEEEEECCCHHHHHHhCCEEEEEECCEEE--EEEccccCC
Confidence 5899999999999999999999999865432 446666654
No 8
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.8e-71 Score=614.70 Aligned_cols=443 Identities=21% Similarity=0.255 Sum_probs=308.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ +|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++..
T Consensus 4 ~i~~~~l~~--------~~~~~-~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~----------- 63 (501)
T PRK10762 4 LLQLKGIDK--------AFPGV-KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY----------- 63 (501)
T ss_pred eEEEeeeEE--------EeCCe-EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 577777654 55432 2345555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---------hcCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|.++......... .....+.+|.....+. .+...+.. .+.....++++.++++.+||.+.+++++.+|
T Consensus 64 ~g~~~~~~~~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 142 (501)
T PRK10762 64 LGKEVTFNGPKSSQ-EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGEL 142 (501)
T ss_pred CCEECCCCCHHHHH-hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhC
Confidence 12111100000000 0001112222111111 00011100 0111223457889999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-cc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-AY 296 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~~ 296 (605)
||||||||+||+||+.+|++|||||||++||+.++.++.++|+++.+.|.|||+||||++++..+||+|++|+.+.. ..
T Consensus 143 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999987789999999999999999999999964321 11
Q ss_pred cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeE
Q 040300 297 GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQI 376 (605)
Q Consensus 297 g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~gei 376 (605)
+.. ...........+...... .....+.. ....+ ....++. + . ..+++++|++.+| |+
T Consensus 223 ~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~-~l~~~~l-~--~----~~l~~vsl~i~~G-----e~ 280 (501)
T PRK10762 223 REV-ADLTEDSLIEMMVGRKLE-------DQYPRLDK-APGEV-RLKVDNL-S--G----PGVNDVSFTLRKG-----EI 280 (501)
T ss_pred cCc-CcCCHHHHHHHhcCCCcc-------cccccccc-CCCCc-EEEEeCc-c--c----CCcccceEEEcCC-----cE
Confidence 111 001111111111110000 00000000 00001 1111111 1 1 2478899998888 78
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcC---CCCCcCcHHHHHHhhhc---c
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKI---SPKFQSTVRHLLHQKIR---D 440 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~---~~~~~~tv~~~~~~~~~---~ 440 (605)
++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+||+. ......|+.+++..... .
T Consensus 281 ~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~ 360 (501)
T PRK10762 281 LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS 360 (501)
T ss_pred EEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhc
Confidence 999999999999999999999999999975 22221 13599999985 23455799987743110 0
Q ss_pred C----CC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 441 S----YT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 441 ~----~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
. .. ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 361 RAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 0 11 123467899999995 678999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+.. .|.|||+||||++++..+|||+++|+++.. ...+++.++
T Consensus 441 ~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 482 (501)
T PRK10762 441 FKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRI--SGEFTREQA 482 (501)
T ss_pred HHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEE--EEEeccccC
Confidence 865 489999999999999999999999986543 234555554
No 9
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-71 Score=628.35 Aligned_cols=468 Identities=19% Similarity=0.225 Sum_probs=320.1
Q ss_pred eEEEecCCcccCCCceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Chhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~ 143 (605)
+|++.||.+ +|+. ....+.+++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.... ...
T Consensus 12 ~l~v~~l~~--------~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~-- 81 (623)
T PRK10261 12 VLAVENLNI--------AFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLR-- 81 (623)
T ss_pred eEEEeceEE--------EecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEec--
Confidence 577777654 5532 112455555 3579999999999999999999999999999999875211 000
Q ss_pred hhhhccch---hhhhHHHHHHHH--HHHhhccccc--ccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCc--
Q 040300 144 LTYFRGSE---LQNYFTRILEDN--LKAIIKPQYV--DHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLN-- 207 (605)
Q Consensus 144 ~~~~~g~~---l~~~~~~~~~~~--~~~~~~~q~~--~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~-- 207 (605)
-.|.+ +.+......... ...++.+|.. ...|. .+...+.. .+.....++++.++++.+||.
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 82 ---RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ---cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 00000 000000000000 0122233321 01111 11111111 012233456788999999995
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
+.+++++.+|||||+|||+||+||+.+|++|||||||++||+..+.++.++|+++.++ |+|||+||||++++..+||+
T Consensus 159 ~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 4689999999999999999999999999999999999999999999999999999865 89999999999999999999
Q ss_pred EEEEeCcccc-cccc----ccchhhHHHHHhhhcCCCCCc-cc-----ccccccc---------c--ccccCCCcchhhh
Q 040300 286 ICCLYGKPGA-YGVV----TLPFSVREGINIFLAGFVPTE-NL-----RFRDESL---------T--FRVAETPQESAEE 343 (605)
Q Consensus 286 i~vl~g~~~~-~g~~----~~~~~~r~~i~~~l~g~~~~e-~~-----~~r~~~~---------~--~~~~~~~~~~~~~ 343 (605)
|++|+.+... .|.. ..|... ....++. ..|.. .+ ..+.... . +............
T Consensus 239 i~vl~~G~i~~~g~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 315 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIFHAPQHP--YTRALLA-AVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQ 315 (623)
T ss_pred EEEeeCCeecccCCHHHhhcCCCCh--hhhhhhh-ccCcccccccccCCccccccccccccccCcccccccccCCCceEE
Confidence 9999743221 1110 011000 0001110 00100 00 0000000 0 0000000010112
Q ss_pred hhhheeeecCC----------ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC
Q 040300 344 IETYARYKYPT----------MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP 411 (605)
Q Consensus 344 ~~~~~~~~y~~----------~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~ 411 (605)
.++. ++.|+. ....+++++|++.+| |+++|+|+||||||||+|+|+|+++|++|++. +..+.
T Consensus 316 ~~~l-~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-----e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 316 VRNL-VTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-----ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred Eeee-EEEEcCCCccccccCCceEEEeeeEeEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 2333 677752 124688999999888 78999999999999999999999999999985 22211
Q ss_pred ----------cceeEeecCcC--CCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCc-hhhccCcCcCChhHH
Q 040300 412 ----------EFNVSYKPQKI--SPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGEL 473 (605)
Q Consensus 412 ----------~~~i~y~~q~~--~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~ 473 (605)
...|+|++|+. ......||.+++...... .. . ....+.++++.++|. ...++++.+||||||
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 23599999986 244457998877532211 11 1 124567899999996 678999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCC
Q 040300 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANA 553 (605)
Q Consensus 474 QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~ 553 (605)
|||+|||||+.+|+||||||||++||+.++..++++|+++.++.|.|||+||||++++.++||||++|+.+.. ...++
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i--v~~g~ 547 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI--VEIGP 547 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecC
Confidence 9999999999999999999999999999999999999998766689999999999999999999999986543 35678
Q ss_pred hhhhhcc
Q 040300 554 PQSLLTG 560 (605)
Q Consensus 554 p~~~~~~ 560 (605)
+++++..
T Consensus 548 ~~~i~~~ 554 (623)
T PRK10261 548 RRAVFEN 554 (623)
T ss_pred HHHHhcC
Confidence 8888753
No 10
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.8e-71 Score=617.48 Aligned_cols=453 Identities=23% Similarity=0.314 Sum_probs=316.2
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceeeCCC-Chhhhhhhh----------
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL--KPNLGRFNNPP-DWQEILTYF---------- 147 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l--~p~~G~i~~~~-~~~~~~~~~---------- 147 (605)
+++++|+.. ..+.+++ .+.+|+++||+|+||||||||+|+|+|++ +|+.|++.... .+.. ..+.
T Consensus 5 ~l~~~~~~~-~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~-~~~~~~~~~~g~~~ 82 (520)
T TIGR03269 5 NLTKKFDGK-EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK-CGYVERPSKVGEPC 82 (520)
T ss_pred EEEEEECCe-EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc-cccccccccccccc
Confidence 456677643 3455666 45899999999999999999999999997 79999975310 0000 0000
Q ss_pred --ccchhh----hh---HHHHHHH-HHHHhhcccc-cccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhh
Q 040300 148 --RGSELQ----NY---FTRILED-NLKAIIKPQY-VDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVI 210 (605)
Q Consensus 148 --~g~~l~----~~---~~~~~~~-~~~~~~~~q~-~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~ 210 (605)
.|..+. +. ....... .....+.+|. ....+. .+...+.. . +.....+.++.++++.+||++.+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 162 (520)
T TIGR03269 83 PVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI 162 (520)
T ss_pred ccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh
Confidence 011100 00 0000000 0112233332 111111 11111110 0 11223356788999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++.+ .|+|||+||||++++..+||+|++|
T Consensus 163 ~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l 242 (520)
T TIGR03269 163 THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL 242 (520)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999999999976 4899999999999999999999999
Q ss_pred eCccccccccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC----ceeeeeeEEEE
Q 040300 290 YGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT----MVKTQGNFKLK 365 (605)
Q Consensus 290 ~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----~~~~l~~~~l~ 365 (605)
+.+...+. ....+....+.... + .+ .. .. .. ..... ....++. ++.|++ ....+++++|+
T Consensus 243 ~~G~i~~~-----g~~~~~~~~~~~~~-~--~~--~~-~~--~~-~~~~~-~l~~~~l-~~~~~~~~~~~~~il~~is~~ 306 (520)
T TIGR03269 243 ENGEIKEE-----GTPDEVVAVFMEGV-S--EV--EK-EC--EV-EVGEP-IIKVRNV-SKRYISVDRGVVKAVDNVSLE 306 (520)
T ss_pred eCCEEeee-----cCHHHHHHHHHhhc-h--hh--cc-cc--cc-CCCCc-eEEEecc-EEEeccCCCCCceEEeeEEEE
Confidence 64321110 11111111111110 0 00 00 00 00 00111 1222334 777742 13468999999
Q ss_pred EeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec---cc---cC----------cceeEeecCcCCCCCcCc
Q 040300 366 VVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD---VE---IP----------EFNVSYKPQKISPKFQST 429 (605)
Q Consensus 366 v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~---~~---~~----------~~~i~y~~q~~~~~~~~t 429 (605)
+.+| |+++|+||||||||||+|+|+|+++|++|++.. .. .. ..+++|+||+.......|
T Consensus 307 i~~G-----e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 381 (520)
T TIGR03269 307 VKEG-----EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT 381 (520)
T ss_pred EcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCc
Confidence 9888 789999999999999999999999999999752 10 00 135899999876555679
Q ss_pred HHHHHHhhhccCCC---CHHHHHHHHhhcCCch-----hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 430 VRHLLHQKIRDSYT---HPQFVSDVMKPLLIEQ-----LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 430 v~~~~~~~~~~~~~---~~~~~~~~l~~l~l~~-----~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
|.+++......... ....+.++++.+++.. ++++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 382 VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99987532111111 1234677899999974 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++..++++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++|++++.
T Consensus 462 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 517 (520)
T TIGR03269 462 TKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI--VKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHh
Confidence 999999999998766689999999999999999999999986543 34467776644
No 11
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.8e-71 Score=617.87 Aligned_cols=452 Identities=20% Similarity=0.261 Sum_probs=315.0
Q ss_pred eEEEecCCcccCCCceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCC
Q 040300 69 AIQIINLPKDLDKDTTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPD 139 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~ 139 (605)
+|++.||. ++|+. ....+++++ .+.+||++||+|+||||||||+|+|+|+++| +.|++..
T Consensus 5 ~l~~~~l~--------~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~--- 73 (529)
T PRK15134 5 LLAIENLS--------VAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF--- 73 (529)
T ss_pred eEEEeceE--------EEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE---
Confidence 46666654 45542 112455555 3579999999999999999999999999987 6898742
Q ss_pred hhhhhhhhccchhhhhHHHHHHH--HHHHhhcccccc--cchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCch
Q 040300 140 WQEILTYFRGSELQNYFTRILED--NLKAIIKPQYVD--HIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 140 ~~~~~~~~~g~~l~~~~~~~~~~--~~~~~~~~q~~~--~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.|..+..+....... .....+.+|... ..+. .+...+.. -+.......++.++++.+||.+
T Consensus 74 --------~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 145 (529)
T PRK15134 74 --------HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQ 145 (529)
T ss_pred --------CCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 121111100000000 001112222210 0000 00001110 0112234567889999999975
Q ss_pred ---hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcC
Q 040300 209 ---VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 209 ---~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D 284 (605)
.+++++.+|||||||||+||+||+.+|++|||||||++||+..+.++.++|+++.++ |+|||+||||++++..+||
T Consensus 146 ~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 225 (529)
T PRK15134 146 AAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLAD 225 (529)
T ss_pred hHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcC
Confidence 469999999999999999999999999999999999999999999999999999765 8999999999999999999
Q ss_pred EEEEEeCccc-ccccc----ccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC-----
Q 040300 285 FICCLYGKPG-AYGVV----TLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT----- 354 (605)
Q Consensus 285 ~i~vl~g~~~-~~g~~----~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----- 354 (605)
+|++|+.+.. .+|.. ..+. ......++... +. .+... ......+ ....++. ++.|+.
T Consensus 226 ri~~l~~G~i~~~g~~~~~~~~~~--~~~~~~~~~~~-~~----~~~~~----~~~~~~~-~l~~~~l-~~~~~~~~~~~ 292 (529)
T PRK15134 226 RVAVMQNGRCVEQNRAATLFSAPT--HPYTQKLLNSE-PS----GDPVP----LPEPASP-LLDVEQL-QVAFPIRKGIL 292 (529)
T ss_pred EEEEEECCEEEEeCCHHHHhhCCC--CHHHHHHHHhC-cc----ccccc----cCCCCCC-cccccCc-EEEeecCcccc
Confidence 9999975321 12210 0000 00111111100 00 00000 0000111 2223344 777752
Q ss_pred -----ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C-------cceeEe
Q 040300 355 -----MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P-------EFNVSY 417 (605)
Q Consensus 355 -----~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~-------~~~i~y 417 (605)
....+++++|++.+| |+++|+||||||||||+|+|+|++ |++|++. +..+ + ...++|
T Consensus 293 ~~~~~~~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 366 (529)
T PRK15134 293 KRTVDHNVVVKNISFTLRPG-----ETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQV 366 (529)
T ss_pred ccccccceeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEE
Confidence 134688999999888 789999999999999999999998 5889875 2211 1 235899
Q ss_pred ecCcCC--CCCcCcHHHHHHhhhc--c-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 418 KPQKIS--PKFQSTVRHLLHQKIR--D-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 418 ~~q~~~--~~~~~tv~~~~~~~~~--~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
++|+.. .....||.+++..... . ... ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++
T Consensus 367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 446 (529)
T PRK15134 367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL 446 (529)
T ss_pred EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 999852 3345799988754211 1 011 123567899999997 578999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||++||+.++..++++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 447 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 516 (529)
T PRK15134 447 IILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV--VEQGDCERVFAA 516 (529)
T ss_pred EEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE--EEEcCHHHHhcC
Confidence 9999999999999999999999998765689999999999999999999999986543 355777777653
No 12
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-70 Score=610.67 Aligned_cols=445 Identities=21% Similarity=0.245 Sum_probs=309.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~--------~~~~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----------- 63 (501)
T PRK11288 4 YLSFDGIG--------KTFPGV-KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI----------- 63 (501)
T ss_pred eEEEeeeE--------EEECCE-EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-----------
Confidence 57777654 456532 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHH-HHHHHHHHHhhcccccccchh-hhhchhhh--------hcCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFT-RILEDNLKAIIKPQYVDHIPK-AVQGNVGQ--------VLDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~-~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~--------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|..+..... ... .....+.+|.....+. .+..++.. ........+++.++++.++|.+..++++.+|
T Consensus 64 ~g~~i~~~~~~~~~--~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (501)
T PRK11288 64 DGQEMRFASTTAAL--AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYL 141 (501)
T ss_pred CCEECCCCCHHHHH--hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhC
Confidence 1111100000 000 0001112222111111 01111100 0112233567889999999998889999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccc-
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAY- 296 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~- 296 (605)
|||||||++||+||+.+|++|||||||++||+.++.++.++|+++.++|.|||+||||++++..+||+|++|+.+....
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 142 SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999998779999999999999999999999997532211
Q ss_pred cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeE
Q 040300 297 GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQI 376 (605)
Q Consensus 297 g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~gei 376 (605)
+......+..+....+..... +. ............ ....+ .+++. ..+++++|++.+| |+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~-~l~~~---~~~~~---~~l~~isl~i~~G-----e~ 281 (501)
T PRK11288 222 FDDMAQVDRDQLVQAMVGREI--GD------IYGYRPRPLGEV-RLRLD---GLKGP---GLREPISFSVRAG-----EI 281 (501)
T ss_pred cCccccCCHHHHHHHhcCCCc--cc------cccccccCCCCc-EEEEe---ccccC---CcccceeEEEeCC-----cE
Confidence 100000011111111111000 00 000000000000 11111 12222 2578999999888 78
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhhhcc---
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQKIRD--- 440 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~~~~--- 440 (605)
++|+||||||||||+|+|+|+++|++|++. +.... ...++|+||+.. .....|+.+++......
T Consensus 282 ~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~ 361 (501)
T PRK11288 282 VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHL 361 (501)
T ss_pred EEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhc
Confidence 999999999999999999999999999885 22211 135899999852 44557998876432110
Q ss_pred --C--CCC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 441 --S--YTH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 441 --~--~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
. ... ...+.++++.+++. +..++++.+|||||||||+||+||+.+|+||||||||+|||+.++..++++|++
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 441 (501)
T PRK11288 362 RAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE 441 (501)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 0 011 23467899999994 788999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
+.+ .|.|||+||||++++..+|||+++|+++.. ...+++++..
T Consensus 442 l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~ 484 (501)
T PRK11288 442 LAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRI--AGELAREQAT 484 (501)
T ss_pred HHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEE--EEEEccccCC
Confidence 864 589999999999999999999999986543 2445555433
No 13
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.3e-70 Score=608.05 Aligned_cols=434 Identities=22% Similarity=0.256 Sum_probs=301.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC--CCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP--NLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++| +.|++.. .|..+.......
T Consensus 7 l~~~~~~~-~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~-----------~g~~~~~~~~~~ 74 (500)
T TIGR02633 7 IVKTFGGV-KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW-----------SGSPLKASNIRD 74 (500)
T ss_pred EEEEeCCe-EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE-----------CCEECCCCCHHH
Confidence 44566542 2455555 3579999999999999999999999999987 7898752 121111000000
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhh---------hcCchHHHHHHHHHHhhcCCchhh-cccCCCCChHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVI-DRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~-dr~v~~LSGGe~QRvaIA 228 (605)
. ......+.+|.....+. .+...+.. .........++.++++.++|.+.. ++++.+|||||||||+||
T Consensus 75 ~-~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 75 T-ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred H-HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 0 00011122222111111 01111100 011123345788899999998754 688999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc-ccccccccchhhHH
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP-GAYGVVTLPFSVRE 307 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~-~~~g~~~~~~~~r~ 307 (605)
+||+.+|++|||||||++||+..+.++.++|+++.++|.|||+||||++++..+||+|++|+.+. ..++... ......
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~ 232 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS-TMSEDD 232 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc-cCCHHH
Confidence 99999999999999999999999999999999998779999999999999999999999996432 1222111 111111
Q ss_pred HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC--ceeeeeeEEEEEeeceeecCeEEEEEecCCC
Q 040300 308 GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT--MVKTQGNFKLKVVEGEFTDSQIIVMLGENGT 385 (605)
Q Consensus 308 ~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~l~~~~l~v~~G~~~~geii~i~G~NGs 385 (605)
.+..+.....+. .+.... ...... ....++. ++.|+. ....+++++|++.+| |+++|+|||||
T Consensus 233 ~~~~~~~~~~~~---~~~~~~-----~~~~~~-~l~~~~l-~~~~~~~~~~~~l~~is~~i~~G-----e~~~l~G~NGs 297 (500)
T TIGR02633 233 IITMMVGREITS---LYPHEP-----HEIGDV-ILEARNL-TCWDVINPHRKRVDDVSFSLRRG-----EILGVAGLVGA 297 (500)
T ss_pred HHHHHhCccccc---cccccc-----cCCCCc-eEEEeCC-cccccccccccccccceeEEeCC-----cEEEEeCCCCC
Confidence 111111100000 000000 000111 1122233 556621 124688999999888 78999999999
Q ss_pred CHHHHHHHHHcCCCC-Ceeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhhhc----c--CCC--
Q 040300 386 GKTTFIRMLAGLLKP-DSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQKIR----D--SYT-- 443 (605)
Q Consensus 386 GKSTLlk~L~Gl~~p-~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~~~----~--~~~-- 443 (605)
|||||+|+|+|+++| ++|++. +..+. ..+++|++|+.. .....|+.+++..... . ...
T Consensus 298 GKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~ 377 (500)
T TIGR02633 298 GRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAA 377 (500)
T ss_pred CHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHH
Confidence 999999999999995 899885 22221 235899999852 3445789887643211 0 011
Q ss_pred -CHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 444 -HPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 444 -~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
....+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.||
T Consensus 378 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tv 456 (500)
T TIGR02633 378 AELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAI 456 (500)
T ss_pred HHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEE
Confidence 1234678999999974 68999999999999999999999999999999999999999999999999999865 58999
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 522 FVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 522 ivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|+||||++++..+|||+++|+++..
T Consensus 457 iivsHd~~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 457 IVVSSELAEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred EEECCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999986543
No 14
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.4e-70 Score=607.65 Aligned_cols=446 Identities=18% Similarity=0.223 Sum_probs=305.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..|++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|++...
T Consensus 3 ~l~~~~l--------~~~~~~~-~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~---------- 63 (490)
T PRK10938 3 SLQISQG--------TFRLSDT-KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQ---------- 63 (490)
T ss_pred eEEEEeE--------EEEcCCe-eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEEC----------
Confidence 4666664 5566543 2456666 458999999999999999999999999999999998521
Q ss_pred ccchhhhhHHHHHHHHHHHhhccccccc--c---hhhhhchhhhhcC-chHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDH--I---PKAVQGNVGQVLD-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~--~---~~~~~~~v~~~l~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
|..+.......... ...+.+|.... . +....-++.+.+. .....+++.++++.+||.+.+++++.+|||||
T Consensus 64 -~~~~~~~~~~~~~~--~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 140 (490)
T PRK10938 64 -FSHITRLSFEQLQK--LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGE 140 (490)
T ss_pred -CcccccCCHHHHHH--HhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHH
Confidence 11110000000000 01122221100 0 0000112333221 12235678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-cccccc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-AYGVVT 300 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~~g~~~ 300 (605)
||||+||+||+.+|++|||||||++||+.++.++.++|+++.++|.|||+||||++++..+||+|++|+.+.. ..|...
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999987789999999999999999999999974322 112100
Q ss_pred cchhhHHHHHhhhc-CCCCCccccccccc-ccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEE
Q 040300 301 LPFSVREGINIFLA-GFVPTENLRFRDES-LTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIV 378 (605)
Q Consensus 301 ~~~~~r~~i~~~l~-g~~~~e~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~ 378 (605)
.... ...+..+.. ..+........... ...... ...+ ....++. ++.|++. ..+++++|++.+| |+++
T Consensus 221 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~l-~~~~~~~-~il~~vsl~i~~G-----e~~~ 290 (490)
T PRK10938 221 EILQ-QALVAQLAHSEQLEGVQLPEPDEPSARHALP-ANEP-RIVLNNG-VVSYNDR-PILHNLSWQVNPG-----EHWQ 290 (490)
T ss_pred HHhc-chhhhhhhhhhccCccccCcccccccccccC-CCCc-eEEEece-EEEECCe-eEEeeceEEEcCC-----CEEE
Confidence 0000 000110000 00000000000000 000000 0111 1122333 6777653 3688999998888 7899
Q ss_pred EEecCCCCHHHHHHHHHcCCCC-Ceeeee--cccc----C----cceeEeecCcCCCCC--cCcHHHHHHhhhc------
Q 040300 379 MLGENGTGKTTFIRMLAGLLKP-DSVEDS--DVEI----P----EFNVSYKPQKISPKF--QSTVRHLLHQKIR------ 439 (605)
Q Consensus 379 i~G~NGsGKSTLlk~L~Gl~~p-~~G~i~--~~~~----~----~~~i~y~~q~~~~~~--~~tv~~~~~~~~~------ 439 (605)
|+||||||||||+|+|+|+.+| ++|++. +... . ...++|++|+....+ ..++.+++.....
T Consensus 291 i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (490)
T PRK10938 291 IVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIY 370 (490)
T ss_pred EECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccc
Confidence 9999999999999999998875 688875 2111 0 235999999754322 2466665432110
Q ss_pred cCCC--CHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 440 DSYT--HPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 440 ~~~~--~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
.... ....+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++
T Consensus 371 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 371 QAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 0011 1235678999999997 899999999999999999999999999999999999999999999999999998765
Q ss_pred CCcEEEEEecCHHHHHh-hcCEEEEEeCCcc
Q 040300 517 AKKTAFVVEHDFIMATY-LADRVIVYEGQPS 546 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~-~adrviv~~g~~~ 546 (605)
.+.|||+||||++++.. +|||+++|+++..
T Consensus 451 ~~~tviivsHd~~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 451 GETQLLFVSHHAEDAPACITHRLEFVPDGDI 481 (490)
T ss_pred CCcEEEEEecchhhhhhhhheeEEEecCCce
Confidence 34579999999999987 6999999986543
No 15
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-70 Score=603.01 Aligned_cols=433 Identities=18% Similarity=0.217 Sum_probs=301.1
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+.......
T Consensus 2 ~nl~~~~~~~-~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~ 69 (491)
T PRK10982 2 SNISKSFPGV-KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF-----------QGKEIDFKSSKE 69 (491)
T ss_pred CceEEEeCCE-EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE-----------CCEECCCCCHHH
Confidence 4677888753 3566666 46899999999999999999999999999999999852 121111000000
Q ss_pred HHHHHHHhhcccccccchh-hhhchhh-------hh-cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVG-------QV-LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~-------~~-l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
. ......+.+|.....+. .+..++. .. .......+++.++++.+++.+.+++++.+|||||||||+||+|
T Consensus 70 ~-~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 70 A-LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKA 148 (491)
T ss_pred H-HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 0 00001122222111111 0111110 00 1112234578889999999988999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccc-cccccchhhHHHH
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAY-GVVTLPFSVREGI 309 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~~i 309 (605)
|+.+|++|||||||++||+.++.++.++|+++.+.|.|||+||||++++..+||++++|+.+.... +.. ......+..
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~~ 227 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL-AGLTMDKII 227 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh-hhCCHHHHH
Confidence 999999999999999999999999999999998779999999999999999999999997532211 110 001111111
Q ss_pred HhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHH
Q 040300 310 NIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTT 389 (605)
Q Consensus 310 ~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKST 389 (605)
..+..... ...+... ....... ....++. ++.+ ...+++++|++.+| |+++|+|||||||||
T Consensus 228 ~~~~~~~~---~~~~~~~-----~~~~~~~-~i~~~~l-~~~~---~~~l~~vsl~i~~G-----e~~~l~G~nGsGKST 289 (491)
T PRK10982 228 AMMVGRSL---TQRFPDK-----ENKPGEV-ILEVRNL-TSLR---QPSIRDVSFDLHKG-----EILGIAGLVGAKRTD 289 (491)
T ss_pred HHHhCCCc---ccccccc-----cCCCCCc-EEEEeCc-cccc---CcccceeeEEEeCC-----cEEEEecCCCCCHHH
Confidence 11111000 0000000 0000111 1111222 3332 23688999999888 789999999999999
Q ss_pred HHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHH-----HHhhhcc-C-CCC---HH
Q 040300 390 FIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHL-----LHQKIRD-S-YTH---PQ 446 (605)
Q Consensus 390 Llk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~-----~~~~~~~-~-~~~---~~ 446 (605)
|+|+|+|+.+|++|++. +..+. ...++|+||+.. .....++.++ +...... . ... ..
T Consensus 290 Ll~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
T PRK10982 290 IVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS 369 (491)
T ss_pred HHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH
Confidence 99999999999999985 22221 123899999742 2223455443 2111000 1 111 23
Q ss_pred HHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 447 FVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 447 ~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
.+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++.. +|.|||+||
T Consensus 370 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vs 448 (491)
T PRK10982 370 DTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIIS 448 (491)
T ss_pred HHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 467789999995 578999999999999999999999999999999999999999999999999999865 599999999
Q ss_pred cCHHHHHhhcCEEEEEeCCcc
Q 040300 526 HDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 526 HD~~~~~~~adrviv~~g~~~ 546 (605)
||++++..+|||+++|+.+..
T Consensus 449 Hd~~~~~~~~d~v~~l~~g~i 469 (491)
T PRK10982 449 SEMPELLGITDRILVMSNGLV 469 (491)
T ss_pred CChHHHHhhCCEEEEEECCEE
Confidence 999999999999999986543
No 16
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.1e-69 Score=593.19 Aligned_cols=439 Identities=26% Similarity=0.361 Sum_probs=304.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc-------hhh
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS-------ELQ 153 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~-------~l~ 153 (605)
++++.||... -+.+++ .+.+|+++||||+||+|||||||+|+|.+.|+.|+|..++.+. +.++... .+.
T Consensus 8 ~ls~~~g~~~-l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~--v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 8 NLSLAYGDRP-LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLR--VGYLSQEPPLDPEKTVL 84 (530)
T ss_pred eeEEeeCCce-eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCce--EEEeCCCCCcCCCccHH
Confidence 3556776542 344555 3579999999999999999999999999999999987654432 1111100 000
Q ss_pred hhH----HHH--HHHHHHHhhcccccccchhhhhchh---hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 154 NYF----TRI--LEDNLKAIIKPQYVDHIPKAVQGNV---GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 154 ~~~----~~~--~~~~~~~~~~~q~~~~~~~~~~~~v---~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
++. ..+ .......... ...+.. ....+.+ .+.+.....+.++..++..||+... ++++++||||||.|
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~R 161 (530)
T COG0488 85 DYVIEGFGELRELLAELEEAYA-LLADPD-DELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRR 161 (530)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH-hcccch-hHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHH
Confidence 000 000 0000000000 000000 0000011 1112223446788899999999877 99999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc-----ccccccc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK-----PGAYGVV 299 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~-----~~~~g~~ 299 (605)
|+||+||+.+||+|||||||||||..++.|+-+.|.++ .| |||+||||.+|++.+|++|+.++.+ +|.|..+
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 99999999999999999999999999999888888754 35 9999999999999999999999643 3444332
Q ss_pred ccchhhH---------------HHHHhhhcCCCCCc--------------ccc---------cccccccccccCCCc---
Q 040300 300 TLPFSVR---------------EGINIFLAGFVPTE--------------NLR---------FRDESLTFRVAETPQ--- 338 (605)
Q Consensus 300 ~~~~~~r---------------~~i~~~l~g~~~~e--------------~~~---------~r~~~~~~~~~~~~~--- 338 (605)
......+ .....|...+.... .+. .+..+..+.+.....
T Consensus 239 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g 318 (530)
T COG0488 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLG 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCC
Confidence 2111110 00111111110000 000 000111011111110
Q ss_pred chhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEee
Q 040300 339 ESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYK 418 (605)
Q Consensus 339 ~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~ 418 (605)
..+....+. ++.|++....+.+++|.+..| +++||+||||+|||||||+|+|.+.|.+|.+. .....++||.
T Consensus 319 ~~vl~~~~~-~~~y~~~~~l~~~~s~~i~~g-----~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~--~g~~v~igyf 390 (530)
T COG0488 319 KLVLEFENV-SKGYDGGRLLLKDLSFRIDRG-----DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK--VGETVKIGYF 390 (530)
T ss_pred CeeEEEecc-ccccCCCceeecCceEEecCC-----CEEEEECCCCCCHHHHHHHHhhhcccCCceEE--eCCceEEEEE
Confidence 101122233 677765444678999998888 79999999999999999999999999999874 2234789999
Q ss_pred cCcCCC-CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 419 PQKISP-KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 419 ~q~~~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+|+... ....|+.+++...... .....+...|..|++. +...+++..||||||-||+||+.++.+|++||||||||
T Consensus 391 ~Q~~~~l~~~~t~~d~l~~~~~~--~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN 468 (530)
T COG0488 391 DQHRDELDPDKTVLEELSEGFPD--GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTN 468 (530)
T ss_pred EehhhhcCccCcHHHHHHhhCcc--ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCc
Confidence 998743 2445888877543222 1156788999999998 56789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
|||++++..+.++|.+| .+|||+||||.+|+..+|++++++++
T Consensus 469 hLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 469 HLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred cCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 99999999999998876 78999999999999999999999997
No 17
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-69 Score=611.12 Aligned_cols=452 Identities=24% Similarity=0.357 Sum_probs=302.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc-------cchhhh
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR-------GSELQN 154 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~-------g~~l~~ 154 (605)
++++||.. ..|++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|+|....... +.++. ...+..
T Consensus 7 ls~~~g~~-~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~--i~~~~q~~~~~~~~~~~~ 83 (638)
T PRK10636 7 LQIRRGVR-VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ--LAWVNQETPALPQPALEY 83 (638)
T ss_pred EEEEeCCc-eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE--EEEEecCCCCCCCCHHHH
Confidence 45566654 2455555 4589999999999999999999999999999999985322110 00100 011110
Q ss_pred hHHHH-----HHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHH
Q 040300 155 YFTRI-----LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 155 ~~~~~-----~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA 228 (605)
.++.. +...+.............. ..+. .+.+.......++.++++.+||. +.+++++.+|||||||||+||
T Consensus 84 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA 161 (638)
T PRK10636 84 VIDGDREYRQLEAQLHDANERNDGHAIAT-IHGK-LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA 161 (638)
T ss_pred HHHhhHHHHHHHHHHHHHhccCCHHHHHH-HHHH-HHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH
Confidence 11000 0000000000000000000 0000 00011123346788999999997 578999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc-----ccccccccch
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP-----GAYGVVTLPF 303 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~-----~~~g~~~~~~ 303 (605)
+||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||+++++.+||+|++|+++. |.|..+....
T Consensus 162 ~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~ 238 (638)
T PRK10636 162 QALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQR 238 (638)
T ss_pred HHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHHHH
Confidence 9999999999999999999999999999988875 5799999999999999999999997432 2222111111
Q ss_pred hhHH------------HH---HhhhcCCCCC--------------cccc-----cccccccccccCCC--cchhhhhhhh
Q 040300 304 SVRE------------GI---NIFLAGFVPT--------------ENLR-----FRDESLTFRVAETP--QESAEEIETY 347 (605)
Q Consensus 304 ~~r~------------~i---~~~l~g~~~~--------------e~~~-----~r~~~~~~~~~~~~--~~~~~~~~~~ 347 (605)
..+. .+ ..+...+... +.+. .......+.+..+. ........+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 318 (638)
T PRK10636 239 ATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKV 318 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCCceEEEEee
Confidence 0000 00 0011100000 0000 00001111111110 0101112233
Q ss_pred eeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCC--CC
Q 040300 348 ARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS--PK 425 (605)
Q Consensus 348 ~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~--~~ 425 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.. ....+++|++|+.. ..
T Consensus 319 -~~~y~~-~~il~~isl~i~~G-----e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~--~~~~~igy~~Q~~~~~l~ 389 (638)
T PRK10636 319 -SAGYGD-RIILDSIKLNLVPG-----SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL--AKGIKLGYFAQHQLEFLR 389 (638)
T ss_pred -EEEeCC-eeeeccceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE--CCCEEEEEecCcchhhCC
Confidence 667765 34688899988888 799999999999999999999999999999741 12357999999742 22
Q ss_pred CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 426 FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
...++.+.+... .. ......+.++++.+++. ...++++.+|||||||||+||++|+.+|+||||||||+|||+.++.
T Consensus 390 ~~~~~~~~~~~~-~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~ 467 (638)
T PRK10636 390 ADESPLQHLARL-AP-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467 (638)
T ss_pred ccchHHHHHHHh-Cc-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 234666554221 11 11234677899999996 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
.+.++|+++ +.|||+||||++++..+|||+++|+++... ...|++.+..
T Consensus 468 ~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~~ 516 (638)
T PRK10636 468 ALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVE-PFDGDLEDYQ 516 (638)
T ss_pred HHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EcCCCHHHHH
Confidence 999999987 359999999999999999999999865432 2567777763
No 18
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-67 Score=590.32 Aligned_cols=454 Identities=23% Similarity=0.309 Sum_probs=301.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++..... ..+.+... ....+......
T Consensus 7 ls~~~~~~-~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q-~~~~~~~~tv~ 82 (530)
T PRK15064 7 ITMQFGAK-PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQ-DQFAFEEFTVL 82 (530)
T ss_pred EEEEeCCc-EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEec-cCCcCCCCcHH
Confidence 44566543 3456666 45899999999999999999999999999999999753211 00111100 00000000001
Q ss_pred HHHHHhhc------------ccccccchhhhhchhhhh------cCchHHHHHHHHHHhhcCCchh-hcccCCCCChHHH
Q 040300 162 DNLKAIIK------------PQYVDHIPKAVQGNVGQV------LDQKDERDMKADLCTDLDLNQV-IDRNVGDLSGGEL 222 (605)
Q Consensus 162 ~~~~~~~~------------~q~~~~~~~~~~~~v~~~------l~~~~~~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~ 222 (605)
+++..... .+. ........-++.+. +.....+.++.++++.+||.+. .++++.+|||||+
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~ 161 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYAL-PEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK 161 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence 11100000 000 00000000001000 1112234568889999999864 4688999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-cc-cccc
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-AY-GVVT 300 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~~-g~~~ 300 (605)
|||+||+||+.+|++|||||||++||+..+.++.++|++ .+.|||+||||++++..+||+|++|+.+.. .| |.+.
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 999999999999999999999999999999999998864 489999999999999999999999975432 11 1111
Q ss_pred cchhhHH----H-----------H---HhhhcCCCCC--------------ccc---cccc--cccc-ccccCCC--cch
Q 040300 301 LPFSVRE----G-----------I---NIFLAGFVPT--------------ENL---RFRD--ESLT-FRVAETP--QES 340 (605)
Q Consensus 301 ~~~~~r~----~-----------i---~~~l~g~~~~--------------e~~---~~r~--~~~~-~~~~~~~--~~~ 340 (605)
.-...++ . + ..+....... +.. .... .... ....... ...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (530)
T PRK15064 239 EYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRN 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCCCCCCCc
Confidence 0000000 0 0 0000000000 000 0000 0000 0000000 000
Q ss_pred hhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecC
Q 040300 341 AEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420 (605)
Q Consensus 341 ~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q 420 (605)
.....+. +++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.. .....++|++|
T Consensus 319 ~l~~~~l-~~~~~~~-~~l~~is~~i~~G-----e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~--~~~~~i~~~~q 389 (530)
T PRK15064 319 ALEVENL-TKGFDNG-PLFKNLNLLLEAG-----ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW--SENANIGYYAQ 389 (530)
T ss_pred eEEEEee-EEeeCCc-eeecCcEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CCceEEEEEcc
Confidence 1112233 6677653 3688899988888 789999999999999999999999999999741 12356999999
Q ss_pred cCC--CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 421 KIS--PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 421 ~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
+.. .....|+.+++... .........+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 390 ~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQW-RQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred cccccCCCCCcHHHHHHHh-ccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 864 22346898876421 11112345677899999994 788999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.++|+++ +.|||+||||++++..+|||+++|+++..+ ...+++.++++
T Consensus 469 LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~-~~~g~~~~~~~ 525 (530)
T PRK15064 469 MDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVV-DFSGTYEEYLR 525 (530)
T ss_pred CCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EcCCCHHHHHH
Confidence 9999999999999886 459999999999999999999999865432 24567776654
No 19
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.2e-67 Score=590.47 Aligned_cols=462 Identities=22% Similarity=0.306 Sum_probs=307.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.....|++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++...... .+.++
T Consensus 6 ~l~i~~l~--------~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~--~i~~v 75 (556)
T PRK11819 6 IYTMNRVS--------KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI--KVGYL 75 (556)
T ss_pred EEEEeeEE--------EEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEE
Confidence 57776654 46652123456666 458999999999999999999999999999999998532110 01111
Q ss_pred c-cchhhhhHHHHHHHHHHHhhcc-------------ccccc---chhhh--hchhhhh---cCchHHHHHHHHHHhhcC
Q 040300 148 R-GSELQNYFTRILEDNLKAIIKP-------------QYVDH---IPKAV--QGNVGQV---LDQKDERDMKADLCTDLD 205 (605)
Q Consensus 148 ~-g~~l~~~~~~~~~~~~~~~~~~-------------q~~~~---~~~~~--~~~v~~~---l~~~~~~~~~~~~l~~l~ 205 (605)
. ...+.. .....+++...... .+... ..... ...+.+. +...+...++.++++.+|
T Consensus 76 ~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 76 PQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred ecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 0 000000 00011111100000 00000 00000 0000000 111122456888999999
Q ss_pred CchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCE
Q 040300 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 206 L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~ 285 (605)
|.. +++++.+|||||||||+||+||+.+|++||||||||+||+.++.++.++|+++. .|||+||||++++..+||+
T Consensus 154 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 154 CPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCe
Confidence 964 799999999999999999999999999999999999999999999999999873 5999999999999999999
Q ss_pred EEEEeCccc-cc-ccccc---chh--h----------HHHHH---hhhcC----CC-----------C--Cccccccccc
Q 040300 286 ICCLYGKPG-AY-GVVTL---PFS--V----------REGIN---IFLAG----FV-----------P--TENLRFRDES 328 (605)
Q Consensus 286 i~vl~g~~~-~~-g~~~~---~~~--~----------r~~i~---~~l~g----~~-----------~--~e~~~~r~~~ 328 (605)
|++|+.+.. .| |.+.. ... . +..+. .+... .. + ......++..
T Consensus 230 i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (556)
T PRK11819 230 ILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNET 309 (556)
T ss_pred EEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccccccCCC
Confidence 999974321 12 11110 000 0 00000 00000 00 0 0000000000
Q ss_pred ccccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 329 LTFRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 329 ~~~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
..+...... ........+. ++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.
T Consensus 310 ~~~~~~~~~~~~~~~l~~~~l-~~~~~~~-~~l~~isl~i~~G-----e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~ 382 (556)
T PRK11819 310 NEIFIPPGPRLGDKVIEAENL-SKSFGDR-LLIDDLSFSLPPG-----GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382 (556)
T ss_pred ceeecCCCCCCCCeEEEEEeE-EEEECCe-eeecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 000000000 0101122233 6677653 4688999998888 78999999999999999999999999999985
Q ss_pred ccccCcceeEeecCcC-CCCCcCcHHHHHHhhhcc-CC-CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHH
Q 040300 407 DVEIPEFNVSYKPQKI-SPKFQSTVRHLLHQKIRD-SY-THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~-~~~~~~tv~~~~~~~~~~-~~-~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
. .....++|+||+. ......|+.+++...... .. ........+++.+++.. ..++++.+|||||||||+|||||
T Consensus 383 ~--~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 383 I--GETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred E--CCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 2 1234699999985 344567999987542211 11 11234557899999974 67999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-CcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-QPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-~~~~~~~~~~p~~~~~~ 560 (605)
+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||++++++ +... ...++..+..+.
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~-~~~g~~~~~~~~ 534 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAVVISHDRWFLDRIATHILAFEGDSQVE-WFEGNFQEYEED 534 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEECCCeEE-EecCCHHHHHHH
Confidence 9999999999999999999999999999986 24899999999999999999999984 4332 345777666554
No 20
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-66 Score=585.42 Aligned_cols=461 Identities=22% Similarity=0.297 Sum_probs=303.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.....+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++...... .+.++
T Consensus 4 ~i~~~nl--------s~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~--~i~~v 73 (552)
T TIGR03719 4 IYTMNRV--------SKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI--KVGYL 73 (552)
T ss_pred EEEEeeE--------EEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEE
Confidence 4666654 556652123455565 458999999999999999999999999999999998532110 01111
Q ss_pred ccc-hhhhhHHHHHHHHHHHhhcccc-----cc------cch-hh------hhchhhhh---cCchHHHHHHHHHHhhcC
Q 040300 148 RGS-ELQNYFTRILEDNLKAIIKPQY-----VD------HIP-KA------VQGNVGQV---LDQKDERDMKADLCTDLD 205 (605)
Q Consensus 148 ~g~-~l~~~~~~~~~~~~~~~~~~q~-----~~------~~~-~~------~~~~v~~~---l~~~~~~~~~~~~l~~l~ 205 (605)
... .+.. .....+++........ .. ..+ .. ....+.+. +.......++.++++.++
T Consensus 74 ~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 74 PQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred eccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 100 0000 0001111111000000 00 000 00 00001111 111122356778899999
Q ss_pred CchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCE
Q 040300 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 206 L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~ 285 (605)
+.. +++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+
T Consensus 152 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 152 CPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCe
Confidence 964 68999999999999999999999999999999999999999999999999876 35999999999999999999
Q ss_pred EEEEeCcc-ccc-cccccchhhHH---------------HHH---hhhc----CC-------------CCCccccccccc
Q 040300 286 ICCLYGKP-GAY-GVVTLPFSVRE---------------GIN---IFLA----GF-------------VPTENLRFRDES 328 (605)
Q Consensus 286 i~vl~g~~-~~~-g~~~~~~~~r~---------------~i~---~~l~----g~-------------~~~e~~~~r~~~ 328 (605)
+++|..+. ..| |.+......++ .+. .+.. +. ....+...++..
T Consensus 228 v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (552)
T TIGR03719 228 ILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQKRNET 307 (552)
T ss_pred EEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 99996432 112 21110000000 000 0000 00 000000000000
Q ss_pred ccccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 329 LTFRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 329 ~~~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
..+...... ........+. ++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~l-~~~~~~~-~~l~~isl~i~~G-----e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 380 (552)
T TIGR03719 308 AEIYIPPGPRLGDKVIEAENL-SKGFGDK-LLIDDLSFKLPPG-----GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380 (552)
T ss_pred ceeecCCCCCCCCeEEEEeeE-EEEECCe-eeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 000000000 0101112233 6677653 3688899998888 78999999999999999999999999999985
Q ss_pred ccccCcceeEeecCcCC-CCCcCcHHHHHHhhhcc-CC-CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHH
Q 040300 407 DVEIPEFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SY-THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~-~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
. .....++|++|+.. .....|+.+++...... .. .......++++.+++.. ..++++.+|||||||||+||+||
T Consensus 381 ~--~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 381 I--GETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred E--CCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 2 12346999999853 44457999987543211 11 11234567899999974 67999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-CcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-QPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||+++|++ +... ...++..+..+
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~-~~~g~~~~~~~ 531 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVE-WFEGNYSEYEE 531 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEE-EeCCCHHHHHH
Confidence 9999999999999999999999999999987 24899999999999999999999985 3332 24566655543
No 21
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-66 Score=593.46 Aligned_cols=459 Identities=22% Similarity=0.308 Sum_probs=304.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChh-----h
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ-----E 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~-----~ 142 (605)
+|++.|| +++|+.. ..|.+++ .+.+|+++||+|+||||||||+|+|+|+++|+.|+|....... .
T Consensus 3 ~l~i~~l--------s~~~~~~-~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGA--------WLSFSDA-PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeE--------EEEeCCc-eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEecc
Confidence 5666665 4466543 2455555 3579999999999999999999999999999999985322100 0
Q ss_pred h-hhhhccchhhhhHHHH--HH------HHHHHhhccccc-ccchhhhhchhhhhc---CchHHHHHHHHHHhhcCCchh
Q 040300 143 I-LTYFRGSELQNYFTRI--LE------DNLKAIIKPQYV-DHIPKAVQGNVGQVL---DQKDERDMKADLCTDLDLNQV 209 (605)
Q Consensus 143 ~-~~~~~g~~l~~~~~~~--~~------~~~~~~~~~q~~-~~~~~~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~ 209 (605)
. .....+..++...... +. ..+...+..... +.+.. ...+...+ .......++.++++.+||.
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-- 149 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNE--LAKLQEQLDHHNLWQLENRINEVLAQLGLD-- 149 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHH--HHHHHHHHHhcCcccHHHHHHHHHHhCCCC--
Confidence 0 0000111111110000 00 000000000000 00000 00000001 1122356788999999997
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
.++++.+|||||+|||+||+||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||+++++.+||+|++|
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 48999999999999999999999999999999999999999999999999987 359999999999999999999999
Q ss_pred eCcc-----ccccccccchhhH------H------HH---HhhhcCCCCC------------cccc---c-c---ccccc
Q 040300 290 YGKP-----GAYGVVTLPFSVR------E------GI---NIFLAGFVPT------------ENLR---F-R---DESLT 330 (605)
Q Consensus 290 ~g~~-----~~~g~~~~~~~~r------~------~i---~~~l~g~~~~------------e~~~---~-r---~~~~~ 330 (605)
+.+. |.|..+......+ . .+ ..+....... +.+. . . .....
T Consensus 227 ~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 306 (635)
T PRK11147 227 DRGKLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAK 306 (635)
T ss_pred ECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCcee
Confidence 6432 2221111100000 0 00 0000000000 0000 0 0 00011
Q ss_pred ccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecc
Q 040300 331 FRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV 408 (605)
Q Consensus 331 ~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~ 408 (605)
+.+.... ........+. ++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++..
T Consensus 307 ~~~~~~~~~~~~~l~~~~l-~~~~~~~-~il~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~- 378 (635)
T PRK11147 307 MQVEEASRSGKIVFEMENV-NYQIDGK-QLVKDFSAQVQRG-----DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC- 378 (635)
T ss_pred EEeCCCCCCCCceEEEeee-EEEECCe-EEEcCcEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-
Confidence 1111110 0101122233 6777653 3688899988888 789999999999999999999999999999852
Q ss_pred ccCcceeEeecCcCC-CCCcCcHHHHHHhhhccC--CCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 409 EIPEFNVSYKPQKIS-PKFQSTVRHLLHQKIRDS--YTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 409 ~~~~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~~--~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
....+++|++|+.. .....||.+++....... ......+.++++.+++. +..++++.+|||||||||+||++|+.
T Consensus 379 -~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 379 -GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred -CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 12347999999753 344579999875422111 11134567889999996 57899999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe-CCcceeeecCChhhh
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE-GQPSVDCVANAPQSL 557 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~-g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||+++++ ++.. ....|+-.+.
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i-~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKI-GRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeE-EEccCCHHHH
Confidence 99999999999999999999999998876 4699999999999999999999997 3433 2344554443
No 22
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.6e-65 Score=586.40 Aligned_cols=454 Identities=21% Similarity=0.256 Sum_probs=297.2
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC---CCCCceeeCCCC-h--h--hhhhhhccchh
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL---KPNLGRFNNPPD-W--Q--EILTYFRGSEL 152 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l---~p~~G~i~~~~~-~--~--~~~~~~~g~~l 152 (605)
+++++||... .|.+++ .+.+|+++||||+||||||||||+|+|.. .|+.|+|..-+. . . .....+.+...
T Consensus 182 nls~~y~~~~-ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~ 260 (718)
T PLN03073 182 NFSISVGGRD-LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDI 260 (718)
T ss_pred eEEEEeCCCE-EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhH
Confidence 4667786543 466666 46899999999999999999999999964 577787742100 0 0 00000000000
Q ss_pred hhhHHHHHHHHHHHhhccccc----------------ccchh-hhhchhhhh------cCchHHHHHHHHHHhhcCCc-h
Q 040300 153 QNYFTRILEDNLKAIIKPQYV----------------DHIPK-AVQGNVGQV------LDQKDERDMKADLCTDLDLN-Q 208 (605)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~q~~----------------~~~~~-~~~~~v~~~------l~~~~~~~~~~~~l~~l~L~-~ 208 (605)
.. .......... .+|.. ...+. .....+.++ ........++.+++..+||. +
T Consensus 261 ~~--~~~~~~~~~~--~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 261 ER--TQLLEEEAQL--VAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HH--HHHHHHHHHH--HHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 00 0000000000 00000 00010 000111111 12223456788999999996 6
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEE
Confidence 789999999999999999999999999999999999999999999999999886 68999999999999999999999
Q ss_pred EeCccc-ccc----ccccchhh---------------HHHHHhhhcCCCCC--------------ccccc-----ccccc
Q 040300 289 LYGKPG-AYG----VVTLPFSV---------------REGINIFLAGFVPT--------------ENLRF-----RDESL 329 (605)
Q Consensus 289 l~g~~~-~~g----~~~~~~~~---------------r~~i~~~l~g~~~~--------------e~~~~-----r~~~~ 329 (605)
|+++.. .|+ .+...... +..+..+...+... +.+.. .+...
T Consensus 414 l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~ 493 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDY 493 (718)
T ss_pred EECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCc
Confidence 975422 121 11110000 00111111100000 00000 00000
Q ss_pred cccccCC---CcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 330 TFRVAET---PQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 330 ~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
.+..+.. .........+. ++.|++....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.
T Consensus 494 ~~~~~~~~~~~~~~~L~~~~l-s~~y~~~~~il~~vsl~i~~G-----e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~ 567 (718)
T PLN03073 494 KFEFPTPDDRPGPPIISFSDA-SFGYPGGPLLFKNLNFGIDLD-----SRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567 (718)
T ss_pred eeecCCCccCCCCceEEEEee-EEEeCCCCeeEeccEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence 1111110 00001122333 677854334688999998888 78999999999999999999999999999984
Q ss_pred ccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 407 DVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
. ....+++|++|+.......+....+.............+.++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 568 ~--~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 568 R--SAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred E--CCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 1 1235799999975222222221111111001112345678899999998 478999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|||+++|+++... ...+++.+
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~-~~~g~~~~ 711 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVT-PFHGTFHD 711 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCCHHH
Confidence 9999999999999999999988888765 349999999999999999999999865432 23455544
No 23
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-65 Score=546.38 Aligned_cols=433 Identities=22% Similarity=0.287 Sum_probs=322.8
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++|+||.. -.|++++ .+++||+++|+|+||||||||+|+|+|.++|+.|+|. +.|......-..
T Consensus 12 ~~i~K~FggV-~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~-----------~~G~~~~~~sp~- 78 (500)
T COG1129 12 RGISKSFGGV-KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL-----------IDGKPVAFSSPR- 78 (500)
T ss_pred ecceEEcCCc-eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE-----------ECCEEccCCCHH-
Confidence 3567788886 3566666 4689999999999999999999999999999999985 233322211100
Q ss_pred HHHHHHHhhcccccccchhh-hhchh---------hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKA-VQGNV---------GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~-~~~~v---------~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
..........+|.+...|.. +..++ ..+++...+++++.++++.+++....+.++.+||+||||.|+|||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 11122233344555544432 11111 123455678889999999999965599999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcccccccc-ccchhhHHH
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVV-TLPFSVREG 308 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~-~~~~~~r~~ 308 (605)
||..+++|+|||||||+|+..+...++++|++|+++|.+||+|||+++++..+||||.||+++..+-... ....+..+.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~l 238 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997543222222 234555555
Q ss_pred HHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHH
Q 040300 309 INIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKT 388 (605)
Q Consensus 309 i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKS 388 (605)
+..+....+.. .+.. + ......++ ....+ .++.+ ..+.+++|++.+| ||+||.|-=|||+|
T Consensus 239 v~~MvGr~~~~---~~~~-~---~~~~~~~~-~l~v~---~l~~~---~~~~dvSf~vr~G-----EIlGiaGLvGaGRT 299 (500)
T COG1129 239 VRLMVGRELED---LFPE-P---PEEGIGEP-VLEVR---NLSGG---GKVRDVSFTVRAG-----EILGIAGLVGAGRT 299 (500)
T ss_pred HHHhhCcchhh---hccc-c---cccCCCCc-EEEEe---cCCCC---CceeCceeEEeCC-----cEEEEeccccCCHH
Confidence 66555431110 1110 0 00000111 10001 11111 1367889998888 79999999999999
Q ss_pred HHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhh-h---c-cCCCC----HH
Q 040300 389 TFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQK-I---R-DSYTH----PQ 446 (605)
Q Consensus 389 TLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~-~---~-~~~~~----~~ 446 (605)
.|+++|.|..++++|++. +.... ...++|+|.+-. ....+++.+|+... . . ..+.+ ..
T Consensus 300 El~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~ 379 (500)
T COG1129 300 ELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERA 379 (500)
T ss_pred HHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHH
Confidence 999999999999999885 22221 125999997632 34567888876322 1 1 11222 24
Q ss_pred HHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 447 FVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 447 ~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
.++++.+.|++. ...++++.+||||+||||.|||||+.+|++|||||||.|+|+.++.+++++|++++.+ |++||+||
T Consensus 380 ~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iS 458 (500)
T COG1129 380 LAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMIS 458 (500)
T ss_pred HHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEe
Confidence 567888999998 6678999999999999999999999999999999999999999999999999999764 99999999
Q ss_pred cCHHHHHhhcCEEEEEeCCcc
Q 040300 526 HDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 526 HD~~~~~~~adrviv~~g~~~ 546 (605)
.|+.++..+||||+||.++..
T Consensus 459 SElpEll~~~DRIlVm~~Gri 479 (500)
T COG1129 459 SELPELLGLSDRILVMREGRI 479 (500)
T ss_pred CChHHHHhhCCEEEEEECCEE
Confidence 999999999999999986543
No 24
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-65 Score=520.14 Aligned_cols=453 Identities=21% Similarity=0.302 Sum_probs=322.9
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCC-C-
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPP-D- 139 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~-~- 139 (605)
.-++|.||...|..+ +...-.+.+++ .+++||.+||||++|||||-..+.+.|+++-+ +|++.... +
T Consensus 5 ~lL~v~nLsV~f~~~-----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQE-----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecC-----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 357888876544311 11123344444 35899999999999999999999999998643 34443110 0
Q ss_pred ---hhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc-hhh------hhcCchHHHHHHHHHHhhcCCc--
Q 040300 140 ---WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG-NVG------QVLDQKDERDMKADLCTDLDLN-- 207 (605)
Q Consensus 140 ---~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~v~------~~l~~~~~~~~~~~~l~~l~L~-- 207 (605)
.+..+...+|..+...|+.. .....|-..-+ .+. .-+.+...++++.++++.+|+.
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEP------------MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEP------------MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP 147 (534)
T ss_pred hcCCHHHHhhhcccceEEEeccc------------ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch
Confidence 01122334444433332211 01111111111 111 2234566788999999999995
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
..++.++++|||||||||+||.||+.+|++||.||||+.||+.-+.++.++|++|.++ |+++++|||||..+..+|||
T Consensus 148 ~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 148 EKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred hhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 3689999999999999999999999999999999999999999999999999999875 99999999999999999999
Q ss_pred EEEEeCcc-ccc-------cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC---
Q 040300 286 ICCLYGKP-GAY-------GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT--- 354 (605)
Q Consensus 286 i~vl~g~~-~~~-------g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--- 354 (605)
|+||+.+. ... .....||+. ..++.--.|..+ + ....... +...++. .+.|+-
T Consensus 228 V~VM~~G~ivE~~~t~~lF~~PqHpYTr-~Ll~aeP~g~~~---------p----~~~~~~~-ll~~~~v-~v~f~i~~g 291 (534)
T COG4172 228 VYVMQHGEIVETGTTETLFAAPQHPYTR-KLLAAEPSGDPP---------P----LPEDAPV-LLEVEDL-RVWFPIKGG 291 (534)
T ss_pred EEEEeccEEeecCcHHHHhhCCCChHHH-HHHhcCCCCCCC---------C----CCCCCCc-eEEecce-EEEEecCCc
Confidence 99996432 111 112233332 222111011000 0 0000011 1111222 333331
Q ss_pred -------ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------ccee
Q 040300 355 -------MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNV 415 (605)
Q Consensus 355 -------~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i 415 (605)
..++.++++|++..| |.+||+|++|||||||-++|.++++++ |.+. +.++. +.++
T Consensus 292 ~~~r~~~~~~AVd~isl~L~~g-----qTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~m 365 (534)
T COG4172 292 FLRRTVDHLRAVDGISLTLRRG-----QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRM 365 (534)
T ss_pred cccccchheEEeccceeEecCC-----CeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhc
Confidence 123567888888887 799999999999999999999999887 8775 22221 2347
Q ss_pred EeecCcCC--CCCcCcHHHHHHhhhc--cCC----CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 416 SYKPQKIS--PKFQSTVRHLLHQKIR--DSY----THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 416 ~y~~q~~~--~~~~~tv~~~~~~~~~--~~~----~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
-.++|++. ....+||.+.+..... ... ...+.+.++|+..|++ ..++++|++.|||||||+||||||+.+|
T Consensus 366 QvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP 445 (534)
T COG4172 366 QVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKP 445 (534)
T ss_pred eEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCC
Confidence 78899864 3456799887754322 211 1235678899999998 6889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++++||||||+||..-+.++.++|+++.++.+.+.++||||+..+..+||+|+||.++.. ...|+.+++++..
T Consensus 446 ~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gki--VE~G~~~~if~~P 518 (534)
T COG4172 446 ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI--VEQGPTEAVFANP 518 (534)
T ss_pred cEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEE--eeeCCHHHHhcCC
Confidence 999999999999999999999999999888899999999999999999999999997654 4568888888764
No 25
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.4e-59 Score=495.21 Aligned_cols=440 Identities=21% Similarity=0.291 Sum_probs=324.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
++...| ++|+|+.. ..+++++ .+++||++||+|+||||||||+++|.|.++|++|+|. +
T Consensus 4 ~l~~~~--------itK~f~~~-~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~-----------v 63 (501)
T COG3845 4 ALEMRG--------ITKRFPGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR-----------V 63 (501)
T ss_pred eEEEec--------cEEEcCCE-EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE-----------E
Confidence 566665 45577732 3455555 4689999999999999999999999999999999984 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchh--------hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNV--------GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v--------~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.+..---. .-.-.....+..|.+...|.. +..++ ...+.....++++.++.+.+||.-.+++++.+||
T Consensus 64 ~G~~v~~~sP-~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLs 142 (501)
T COG3845 64 DGKEVRIKSP-RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLS 142 (501)
T ss_pred CCEEeccCCH-HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCC
Confidence 2322110000 001122233445554444432 11111 1123445678899999999999989999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccc
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGV 298 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~ 298 (605)
-||||||.|.+||.++|++|||||||+-|-|.+..+++..+++|+++|+|||+|||.+.++..+||++.||+.+.. .|.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv-vgt 221 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV-VGT 221 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeE-Eee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986542 233
Q ss_pred cc--cchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeE
Q 040300 299 VT--LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQI 376 (605)
Q Consensus 299 ~~--~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~gei 376 (605)
+. .+.+..+....+....+...- .+....+.+. ....++. ++.-......+.++||++..| ||
T Consensus 222 ~~~~~~~t~~ela~lMvG~~v~~~~--------~~~~~~pg~~-vL~V~~L-~v~~~~~~~~v~~vs~~Vr~G-----EI 286 (501)
T COG3845 222 VDPVAETTEEELAELMVGREVVLRV--------VKPPSTPGEV-VLEVEDL-SVKDRRGVTAVKDVSFEVRAG-----EI 286 (501)
T ss_pred ecCCCCCCHHHHHHHhcCCcccccc--------ccCCCCCCCe-EEEEeee-EeecCCCCceeeeeeeEEecC-----cE
Confidence 22 233444444444332222110 0111111122 1111222 222222224578899999888 79
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C-----cceeEeecCcC---CCCCcCcHHHHHHhhhc---
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P-----EFNVSYKPQKI---SPKFQSTVRHLLHQKIR--- 439 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~-----~~~i~y~~q~~---~~~~~~tv~~~~~~~~~--- 439 (605)
+||.|-.|.|.+.|+.+|+|+.+|.+|.+. +.+. + ...++|+|.+- ....++|+.+|+.....
T Consensus 287 vGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~ 366 (501)
T COG3845 287 VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK 366 (501)
T ss_pred EEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc
Confidence 999999999999999999999999889875 3222 1 23689999864 34467789887643211
Q ss_pred ----cCCCC----HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040300 440 ----DSYTH----PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510 (605)
Q Consensus 440 ----~~~~~----~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 510 (605)
..+.+ ..++.++++.|++. .-.+.++.+||||++||+.+||-|..+|++||+.+||.|||+.+...+.+.|
T Consensus 367 ~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l 446 (501)
T COG3845 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446 (501)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHH
Confidence 11222 25678899999998 5667789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 511 KRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
.+.. +.|++|++||-|++++..+||||.||.++..
T Consensus 447 ~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 447 LELR-DAGKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred HHHH-hcCCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 9974 5699999999999999999999999986543
No 26
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=7.8e-57 Score=475.92 Aligned_cols=444 Identities=22% Similarity=0.297 Sum_probs=291.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC-------CC-Ch
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN-------PP-DW 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~-------~~-~~ 140 (605)
+++|.||...+..-... -...|.| .+|+.+||+|+|||||||+|++|+|-..|..-++.. +| .|
T Consensus 75 dvk~~sls~s~~g~~l~--kd~~~El------~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELI--KDVTLEL------NRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cceeeeeeeccCCceee--eeeeEEe------cCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 67777776543211111 1123555 699999999999999999999999999886443321 11 12
Q ss_pred hhhhhhh--ccchhhhhHHHHHHHHHHHhhcccccccchhhhhch---hh---hhcCchHHHHHHHHHHhhcCC-chhhc
Q 040300 141 QEILTYF--RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN---VG---QVLDQKDERDMKADLCTDLDL-NQVID 211 (605)
Q Consensus 141 ~~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~---v~---~~l~~~~~~~~~~~~l~~l~L-~~~~d 211 (605)
+.+...+ ...+.+. ++.... .+........... .. +.++......++..++..+|. .++.+
T Consensus 147 ~av~~v~~~~~~e~~r-----le~~~E-----~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~ 216 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKR-----LEYLAE-----DLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQD 216 (614)
T ss_pred HHHHHHhhhhHHHHHH-----HHHHHH-----HHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHH
Confidence 1111000 0000000 000000 0101101100001 11 112223334566777777776 57899
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+.+|||||+.|++|||+|..+|++|+|||||+|||+.++.++-+.|.+.-. .++++++|+.+++..+|.+|+.|+.
T Consensus 217 k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 217 KKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhHhhhhheecc
Confidence 99999999999999999999999999999999999999988877777665422 2899999999999999999999987
Q ss_pred ccccc-----cccccchhh------------HHH-------HHhhhcCCC-------CCccc------------cccccc
Q 040300 292 KPGAY-----GVVTLPFSV------------REG-------INIFLAGFV-------PTENL------------RFRDES 328 (605)
Q Consensus 292 ~~~~~-----g~~~~~~~~------------r~~-------i~~~l~g~~-------~~e~~------------~~r~~~ 328 (605)
+...| ..+....+. .+. |..+..|+. ..++. .+.+..
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 65332 111111100 001 111111100 00000 001111
Q ss_pred ccccccCCCc--chhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 329 LTFRVAETPQ--ESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 329 ~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
+.|++.+... +......++ +|.|++....+.+++|-+..+ +.+++|||||+|||||||++.|.+.|+.|.+.
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv-~F~y~~~~~iy~~l~fgid~~-----srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs 448 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNV-SFGYSDNPMIYKKLNFGIDLD-----SRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 (614)
T ss_pred EEEEcccccCCCCCeEEEecc-ccCCCCcchhhhhhhcccCcc-----cceeEecCCCCchhhhHHHHhhcccccccccc
Confidence 1222211111 101112233 666664433466667766666 69999999999999999999999999999873
Q ss_pred ccccCcceeEeecCcCCC--CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 407 DVEIPEFNVSYKPQKISP--KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
......+++..|+... ..+.++.+++...... ....+....++.++|+. +..+.++.+||+|||.||++|+.++
T Consensus 449 --~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 449 --RHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred --ccccccchhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHh
Confidence 2223456777777543 2344666666543322 23346778899999999 6778899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+.|.+|||||||+|||+++...+.+.|.++ .++||+||||+.++..+|+++++.+++.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCc
Confidence 999999999999999999999988888876 6789999999999999999999988654
No 27
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.2e-57 Score=456.49 Aligned_cols=246 Identities=62% Similarity=0.966 Sum_probs=222.7
Q ss_pred eecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCc
Q 040300 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQST 429 (605)
Q Consensus 350 ~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~t 429 (605)
|+|++..+.+++|+|++.+|++.+||+++|+||||||||||+++|+|+++|++|++. +....++|++|+....+..|
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~---~~g~~i~~~~q~~~~~~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE---IELDTVSYKPQYIKADYEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE---ECCceEEEecccccCCCCCC
Confidence 578888888999999999999999999999999999999999999999999999874 22337999999977667789
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 430 VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
|.+++...............++++.+++.+..++++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~ 157 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV 157 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 99987532211112234567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccceecceEEEecCCCCcceeecCCCC
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDST 589 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~ 589 (605)
|+++.++.++|||+||||++++..+|||+++|+++++..+..++|.++..+||.|++.++++||+||.++|||+||+||+
T Consensus 158 l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~ 237 (246)
T cd03237 158 IRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPRINKLGSV 237 (246)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEecCcccCCCCCCCcchH
Confidence 99987666899999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CcHhhhhcC
Q 040300 590 KDRDQKAAG 598 (605)
Q Consensus 590 ~~~~~~~~~ 598 (605)
+|||||+.|
T Consensus 238 ~~~~~~~~~ 246 (246)
T cd03237 238 KDREQKESG 246 (246)
T ss_pred HHHHHHhcC
Confidence 999999987
No 28
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-56 Score=470.75 Aligned_cols=421 Identities=23% Similarity=0.339 Sum_probs=275.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
....||... -|.+-+ .+..|..+||+|+||+|||||||+|+- |.++.-+.-+++ +|....... ..+.
T Consensus 86 fdLa~G~k~-LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~----~g~~t~~~~-~~l~ 153 (582)
T KOG0062|consen 86 FDLAYGGKI-LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEV----RGDDTEALQ-SVLE 153 (582)
T ss_pred eeeeecchh-hhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhhe----eccchHHHh-hhhh
Confidence 344677642 233333 346899999999999999999999987 444432222221 111110000 0000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
...... .++..-+ ++.....-.+....+|..+|+. ++..+++++||||||.|++|||||..+||+|||
T Consensus 154 ~D~~~~---dfl~~e~--------~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 154 SDTERL---DFLAEEK--------ELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred ccHHHH---HHHHhhh--------hhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 000000 0000000 0000001122233488899997 577899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc-----ccccccccch------------
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP-----GAYGVVTLPF------------ 303 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~-----~~~g~~~~~~------------ 303 (605)
|||||+||+.+..|+-..|.. .+.|+|+||||..|++.+|..|+.+.+.. |+|..+....
T Consensus 223 DEPTNhLDv~av~WLe~yL~t---~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe 299 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQT---WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFE 299 (582)
T ss_pred cCCcccchhHHHHHHHHHHhh---CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcc
Confidence 999999999987777766655 46899999999999999999999986543 3333221111
Q ss_pred ---hhHHHHHhhhcCCCCCcccccccccc----------------------cccccCCCcc---hhhhhhhheeeecCCc
Q 040300 304 ---SVREGINIFLAGFVPTENLRFRDESL----------------------TFRVAETPQE---SAEEIETYARYKYPTM 355 (605)
Q Consensus 304 ---~~r~~i~~~l~g~~~~e~~~~r~~~~----------------------~~~~~~~~~~---~~~~~~~~~~~~y~~~ 355 (605)
..|..+..|.+.|.-..+ +..++ .|.++...+. .......+ .|.|+..
T Consensus 300 ~q~~~R~h~q~fid~FrYna~---ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V-~f~y~p~ 375 (582)
T KOG0062|consen 300 VQMKYRAHLQVFIDKFRYNAA---RASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV-AFEYTPS 375 (582)
T ss_pred hHHHHHHHHHHHHHHhccCcc---cchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEee-eccCCCc
Confidence 112333333332211000 00000 0111110000 00000011 2333221
Q ss_pred e-eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHH-
Q 040300 356 V-KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHL- 433 (605)
Q Consensus 356 ~-~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~- 433 (605)
. ..+.+++++...- +.++++|+||+||||++|++.|.+.|..|.+. ..++.+++|..|+.-..++..|..+
T Consensus 376 ~y~~~~~~~~d~e~~-----sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~--~~~r~ri~~f~Qhhvd~l~~~v~~vd 448 (582)
T KOG0062|consen 376 EYQWRKQLGLDRESD-----SRISRVGENGDGKSTLLKILKGDLTPTRGIVG--RHPRLRIKYFAQHHVDFLDKNVNAVD 448 (582)
T ss_pred chhhhhccCCccchh-----hhhheeccCchhHHHHHHHHhccCCcccceee--ecccceecchhHhhhhHHHHHhHHHH
Confidence 1 1223333433333 58999999999999999999999999998752 3457789999998544444444432
Q ss_pred -HHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040300 434 -LHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511 (605)
Q Consensus 434 -~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 511 (605)
+..... -...+.++.-+..|||. ++..+++.+|||||+-||++|.+..++|.+|+|||||||||.++...+.+.|+
T Consensus 449 ~~~~~~p--G~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 449 FMEKSFP--GKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred HHHHhCC--CCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 222211 12456678889999998 68888899999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 512 RFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
+| ++.||+||||.+++..+|+.+|+.+++..
T Consensus 527 ~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 527 NF----NGGVVLVSHDEEFISSLCKELWVVEDGKV 557 (582)
T ss_pred hc----CCcEEEEECcHHHHhhcCceeEEEcCCcE
Confidence 87 67899999999999999999999987643
No 29
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-53 Score=520.04 Aligned_cols=188 Identities=21% Similarity=0.217 Sum_probs=157.4
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecCcCCCCCcCcHHHHHHhh--hc
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQKISPKFQSTVRHLLHQK--IR 439 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q~~~~~~~~tv~~~~~~~--~~ 439 (605)
++.+||++||+||||||||||+|+|+|+++|++|++. +..+. ...|||+||.......+|++|++... .+
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~ 2040 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc
Confidence 4455689999999999999999999999999999985 22221 23599999987666678999987532 21
Q ss_pred cCCC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Q 040300 440 DSYT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 440 ~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 517 (605)
.... ....+.++++.++|.+..++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.++++|+++.+ .
T Consensus 2041 g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~ 2119 (2272)
T TIGR01257 2041 GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-E 2119 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 1111 123456789999999999999999999999999999999999999999999999999999999999999865 4
Q ss_pred CcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 518 KKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 518 g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+|||++|||++++..+|||+++|.++.. ...|+++++...
T Consensus 2120 g~TIILtTH~mee~e~lcDrV~IL~~G~i--~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2120 GRAVVLTSHSMEECEALCTRLAIMVKGAF--QCLGTIQHLKSK 2160 (2272)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHHH
Confidence 89999999999999999999999986543 466899998664
No 30
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-52 Score=483.17 Aligned_cols=199 Identities=25% Similarity=0.394 Sum_probs=158.0
Q ss_pred eeecCCce--eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTMV--KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~--~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
.|.||... ..++|++|++..| +-+|||||+||||||.+.+|-..+.|++|.+. +.++. +.+++.
T Consensus 994 ~F~YPsRP~~~Il~~l~l~i~~G-----qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen 994 SFAYPTRPDVPVLNNLSLSIRAG-----QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred EeeCCCCCCchhhcCCcEEecCC-----CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce
Confidence 35566432 3567888888888 68999999999999999999999999999875 23332 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-------hcc----CcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-------MDQ----EVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~----~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+.|++. .|..|++||+.... .. .....+.+.++.-++.++ .|. .-.+||||||||+||||||+++|
T Consensus 1069 VsQEP~-LF~~TIrENI~YG~-~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnP 1145 (1228)
T KOG0055|consen 1069 VSQEPV-LFNGTIRENIAYGS-EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNP 1145 (1228)
T ss_pred eccCch-hhcccHHHHHhccC-CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCC
Confidence 999975 47889999986542 11 234455555555444332 233 45689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||||||-||+||.++.+.+.++|.+.. .|.|.|+|.|-+..+.+ ||.|+|++++.. ...|+-+++...
T Consensus 1146 kILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~V--vE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1146 KILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKV--VEQGTHDELLAK 1214 (1228)
T ss_pred CeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEE--EecccHHHHHhC
Confidence 9999999999999999999999999974 48999999999999976 999999997654 456888887763
No 31
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.3e-52 Score=505.81 Aligned_cols=201 Identities=22% Similarity=0.299 Sum_probs=158.7
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--------------------------
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-------------------------- 400 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-------------------------- 400 (605)
+|+|++. ..++++++|++.+| +.+||+||+|||||||+++|.|++.|
T Consensus 1172 sF~Y~~~~~~~vL~~lsl~i~~G-----~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1172 NFRYISRPNVPIYKDLTFSCDSK-----KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEECCCCCCCccccCeeEEEcCC-----CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 6778642 24688999998888 68999999999999999999999998
Q ss_pred ----------------------------Ceeeee--ccccC-------cceeEeecCcCCCCCcCcHHHHHHhhhccCCC
Q 040300 401 ----------------------------DSVEDS--DVEIP-------EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYT 443 (605)
Q Consensus 401 ----------------------------~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~ 443 (605)
++|+|. +.++. +..|+|+||++. .|.+|+++|+..... ..
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~-LF~gTIreNI~~g~~--~a 1323 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM-LFNMSIYENIKFGKE--DA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc-cccccHHHHHhcCCC--CC
Confidence 478775 22221 235999999975 478999999865422 12
Q ss_pred CHHHHHHHHhhcCCchhh-------c----cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 444 HPQFVSDVMKPLLIEQLM-------D----QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 444 ~~~~~~~~l~~l~l~~~~-------~----~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
..+.+.++++..++.++. | .....||||||||++|||||+++|+|||||||||+||.++...+.+.|.+
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 344566677776665433 2 23457999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeC----CcceeeecCChhhhhc
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEG----QPSVDCVANAPQSLLT 559 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g----~~~~~~~~~~p~~~~~ 559 (605)
+....++|+|+|+|.+..+.. ||+|+||++ +..+ ...|+.++++.
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv-~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFV-QAHGTHEELLS 1452 (1466)
T ss_pred HhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEE-EEecCHHHHHh
Confidence 742348999999999998864 999999986 3322 35688888875
No 32
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-50 Score=497.70 Aligned_cols=199 Identities=19% Similarity=0.280 Sum_probs=160.0
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+. ...++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +.+++|+
T Consensus 1241 sf~Y~~~~~~vL~~isl~I~~G-----ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1241 HLRYRPGLPPVLHGLSFFVSPS-----EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred EEEECCCCCcccccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEE
Confidence 566743 234678888888887 79999999999999999999999999999985 33222 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|..|+++|+... .. .+.+.+.++++..++.+... ....+||||||||++|||||+++|+
T Consensus 1316 pQdp~-LF~gTIr~NL~~~--~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1316 PQSPV-LFSGTVRFNIDPF--SE-HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred CCCCe-eeCccHHHHcCCC--CC-CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 99975 4788999998532 11 23345666777766654432 3346899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||||||||+||.++...+.+.|++.. .++|+|+|+|.++.+.. ||||+||+++.. ...|+|++++...
T Consensus 1392 ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~i--vE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1392 ILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQV--LEYDSPQELLSRD 1460 (1495)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhCC
Confidence 999999999999999999999999863 47999999999999986 999999996554 4569999998754
No 33
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-50 Score=494.08 Aligned_cols=198 Identities=18% Similarity=0.277 Sum_probs=160.7
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+.. ..++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +.+++|+
T Consensus 1244 sf~Y~~~~~~VL~~is~~I~~G-----ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1244 VLRYRPELPPVLHGLSFEISPS-----EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred EEEeCCCCCceecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEE
Confidence 5667532 34688888888888 79999999999999999999999999999985 33322 2469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|..|+++|+... .. .+.+.+.++++..++.+... ....+||||||||++|||||+++|+
T Consensus 1319 pQdp~-LF~GTIreNLd~~--~~-~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1319 PQAPV-LFSGTVRFNLDPF--NE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred CCCCc-cccccHHHHhCcC--CC-CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99975 4788999998532 11 23445667777766654432 2345899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||||+||.++...+.+.|++.. .++|+|+|+|.++.+.. ||||+||+++.. ...|+|++++..
T Consensus 1395 ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~I--vE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRV--VEFDTPENLLSN 1462 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEE--EEeCCHHHHHhC
Confidence 999999999999999999999999864 47999999999999986 999999997554 456999999864
No 34
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-50 Score=492.43 Aligned_cols=185 Identities=21% Similarity=0.264 Sum_probs=149.0
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--ccccC---cceeEeecCcCCCCCcCcHHHHHHhhh-
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEIP---EFNVSYKPQKISPKFQSTVRHLLHQKI- 438 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~- 438 (605)
++++.+||+++|+||||||||||+++|+|+.+ |++|++. +.... ...++|++|+....+..||+|++....
T Consensus 783 s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~ 862 (1394)
T TIGR00956 783 DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAY 862 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHH
Confidence 45566678999999999999999999999997 6889875 22221 235899999865566789999875421
Q ss_pred -cc--CCCC---HHHHHHHHhhcCCchhhccCcC----cCChhHHHHHHHHHHHccCCC-EEEEecCCCCCCHHHHHHHH
Q 040300 439 -RD--SYTH---PQFVSDVMKPLLIEQLMDQEVV----NLSGGELQRVALCLCLGKPAD-IYLIDEPSAYLDSEQRIVAA 507 (605)
Q Consensus 439 -~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~----~LSGGe~QRvaiA~aL~~~p~-lllLDEPt~~LD~~~~~~l~ 507 (605)
+. .... .+.++++++.+++.+.+|+.++ .|||||||||+||++|+.+|+ ||||||||+|||+.++..+.
T Consensus 863 l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 863 LRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 11 1111 2356789999999999999887 799999999999999999997 99999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecCHHH-HHhhcCEEEEEeCC-cceeeecCChh
Q 040300 508 KVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVYEGQ-PSVDCVANAPQ 555 (605)
Q Consensus 508 ~~l~~l~~~~g~tiivvsHD~~~-~~~~adrviv~~g~-~~~~~~~~~p~ 555 (605)
++|+++.+ .|.|||+++||+.. +...+||+++++.+ .. ...|++.
T Consensus 943 ~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i--v~~G~~~ 989 (1394)
T TIGR00956 943 KLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQT--VYFGDLG 989 (1394)
T ss_pred HHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE--EEECCcc
Confidence 99999864 58999999999986 44679999999843 32 3445553
No 35
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.4e-50 Score=491.85 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=159.1
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+.. ..++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +.+++|+
T Consensus 1291 sf~Y~~~~~~vL~~is~~I~~G-----ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iV 1365 (1522)
T TIGR00957 1291 CLRYREDLDLVLRHINVTIHGG-----EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITII 1365 (1522)
T ss_pred EEEeCCCCcccccceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEE
Confidence 5667542 24678888888888 79999999999999999999999999999985 33322 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-------cc----CcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-------DQ----EVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~----~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|..|+++|+... .. .+.+.+.++++..++.+.. |. ...+||||||||++|||||+++|+
T Consensus 1366 pQdp~-LF~gTIr~NLdp~--~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957 1366 PQDPV-LFSGSLRMNLDPF--SQ-YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred CCCCc-ccCccHHHHcCcc--cC-CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 99975 4788999998421 11 2334556677776665432 33 335799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||||+||.++...+.+.|++.. .+.|+|+|+|+++.+.. ||||+||+++.. ...|+|++++..
T Consensus 1442 ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~I--vE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1442 ILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEV--AEFGAPSNLLQQ 1509 (1522)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999863 47999999999999886 899999997554 456999998865
No 36
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.2e-49 Score=483.86 Aligned_cols=198 Identities=18% Similarity=0.221 Sum_probs=159.4
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|++. ..++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +..|+|+
T Consensus 1315 sf~Y~~~~~~vL~~vsf~I~~G-----ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iV 1389 (1560)
T PTZ00243 1315 QMRYREGLPLVLRGVSFRIAPR-----EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMI 1389 (1560)
T ss_pred EEEeCCCCCceeecceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEE
Confidence 5566543 23678888888777 79999999999999999999999999999985 33322 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-------cc----CcCcCChhHHHHHHHHHHHccC-C
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-------DQ----EVVNLSGGELQRVALCLCLGKP-A 486 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~----~~~~LSGGe~QRvaiA~aL~~~-p 486 (605)
||++. .|..|+++|+... . ..+.+.+.++++..++.+.. |. .-.+||||||||++|||||+++ |
T Consensus 1390 pQdp~-LF~gTIreNIdp~--~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1390 PQDPV-LFDGTVRQNVDPF--L-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred CCCCc-cccccHHHHhCcc--c-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99975 5788999998431 1 12345677788887776543 22 3357999999999999999995 8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||||+||.++...+.+.|++.. .+.|+|+|+|.++.+.. ||||+||+++.. ...|+|++++..
T Consensus 1466 ~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~V--vE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1466 GFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAV--AEMGSPRELVMN 1534 (1560)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999863 37999999999998875 999999997554 456999999863
No 37
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-51 Score=418.36 Aligned_cols=335 Identities=21% Similarity=0.306 Sum_probs=246.1
Q ss_pred HHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE
Q 040300 193 ERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271 (605)
Q Consensus 193 ~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv 271 (605)
...+++.+|.-||++ ++-+|+...+|||||.||.|||||..+|-+|+|||||+|||..+..|+-..|.- +.+|+++
T Consensus 388 AEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQg---WkKTLLI 464 (807)
T KOG0066|consen 388 AEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQG---WKKTLLI 464 (807)
T ss_pred chhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhh---hhheeEE
Confidence 356788899999997 578999999999999999999999999999999999999999988777766655 4679999
Q ss_pred EecCHhHHHhhcCEEEEEeCcc-----ccccccccchh--hHHHHHhh---------------------------h----
Q 040300 272 VEHDLSVLDYLSDFICCLYGKP-----GAYGVVTLPFS--VREGINIF---------------------------L---- 313 (605)
Q Consensus 272 vsHdl~~l~~~~D~i~vl~g~~-----~~~g~~~~~~~--~r~~i~~~---------------------------l---- 313 (605)
||||-.|++.+|..|+.|+... |.|..+...|. .++.+..| +
T Consensus 465 VSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq 544 (807)
T KOG0066|consen 465 VSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQ 544 (807)
T ss_pred EecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999996543 34433221111 01111111 0
Q ss_pred --cCCCC---Ccc-------cccccccccccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEE
Q 040300 314 --AGFVP---TEN-------LRFRDESLTFRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVM 379 (605)
Q Consensus 314 --~g~~~---~e~-------~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i 379 (605)
.+... .+. .|..+.+..|.++++. .+.+.-...+ .|.|++..+.+.+++|-+.-- .+++|
T Consensus 545 ~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~V-tFgy~gqkpLFkkldFGiDmd-----SRiaI 618 (807)
T KOG0066|consen 545 KKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDV-TFGYPGQKPLFKKLDFGIDMD-----SRIAI 618 (807)
T ss_pred HhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccc-cccCCCCCchhhccccccccc-----ceeEE
Confidence 00000 000 0122334445554432 1212223334 788877666667777766544 47999
Q ss_pred EecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCC--CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCC
Q 040300 380 LGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPK--FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLI 457 (605)
Q Consensus 380 ~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l 457 (605)
+||||.||||||++|.|-+.|..|+.. ...+++||+..|+.... ...|..+++...+. ...+.+...|-.+||
T Consensus 619 VGPNGVGKSTlLkLL~Gkl~P~~GE~R--KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN---lpyq~ARK~LG~fGL 693 (807)
T KOG0066|consen 619 VGPNGVGKSTLLKLLIGKLDPNDGELR--KNHRLRIGWFDQHANEALNGEETPVEYLQRKFN---LPYQEARKQLGTFGL 693 (807)
T ss_pred ECCCCccHHHHHHHHhcCCCCCcchhh--ccceeeeechhhhhHHhhccccCHHHHHHHhcC---CChHHHHHHhhhhhh
Confidence 999999999999999999999999852 23456899999875422 23466666643321 234567788899999
Q ss_pred chhhc-cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC
Q 040300 458 EQLMD-QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536 (605)
Q Consensus 458 ~~~~~-~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad 536 (605)
..-.+ -.+..|||||+-||++|-.-+..||+|||||||++||+++...+.+.|+++ ...|||||||-.++...--
T Consensus 694 ~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 694 ASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVETDC 769 (807)
T ss_pred hhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeeecCc
Confidence 74433 467899999999999999999999999999999999999999999999886 6789999999998887666
Q ss_pred EEEEEeCCc
Q 040300 537 RVIVYEGQP 545 (605)
Q Consensus 537 rviv~~g~~ 545 (605)
..||++++.
T Consensus 770 ~LwVvE~Q~ 778 (807)
T KOG0066|consen 770 NLWVVENQG 778 (807)
T ss_pred eEEEEccCC
Confidence 788887653
No 38
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.6e-49 Score=475.90 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=142.8
Q ss_pred eeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeee--ccccC----cceeEeecCcCCCCCcCcHHHHHHhhh
Q 040300 367 VEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDS--DVEIP----EFNVSYKPQKISPKFQSTVRHLLHQKI 438 (605)
Q Consensus 367 ~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~--~~~~~----~~~i~y~~q~~~~~~~~tv~~~~~~~~ 438 (605)
.+|.+.+||+++|+|||||||||||++|+|..++ .+|++. +.... ...++|++|+.......||+|++....
T Consensus 899 vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a 978 (1470)
T PLN03140 899 VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSA 978 (1470)
T ss_pred cEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence 3455666789999999999999999999999764 568764 22211 234899999866556689999875321
Q ss_pred --c--cCCCC---HHHHHHHHhhcCCchhhccCc-----CcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040300 439 --R--DSYTH---PQFVSDVMKPLLIEQLMDQEV-----VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506 (605)
Q Consensus 439 --~--~~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l 506 (605)
+ ..... ...++++++.++|.+..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+
T Consensus 979 ~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v 1058 (1470)
T PLN03140 979 FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058 (1470)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence 1 11111 235788999999999888886 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCHH-HHHhhcCEEEEEe
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVYE 542 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~-~~~~~adrviv~~ 542 (605)
+++|+++.+ .|.|||+++|+.. .+..++|++++|+
T Consensus 1059 ~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1059 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred HHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 999999865 4899999999997 4677899999997
No 39
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.5e-47 Score=465.46 Aligned_cols=181 Identities=26% Similarity=0.288 Sum_probs=146.7
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCCcCcHHHHHHhhhcc
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKFQSTVRHLLHQKIRD 440 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~tv~~~~~~~~~~ 440 (605)
++++||.+||+|++|||||||+++|+|++. ++|+|. +.++. +.+++|+||++. .|..|+++|+... .
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~-LF~GTIR~NLdp~--~ 1316 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF-IFSGTFRKNLDPY--E 1316 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc-cCccCHHHHhCcc--c
Confidence 444558999999999999999999999996 789875 33322 236999999975 4788999998421 1
Q ss_pred CCCCHHHHHHHHhhcCCchhhccC-----------cCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 441 SYTHPQFVSDVMKPLLIEQLMDQE-----------VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 441 ~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
..+.+.+.++++..++.+...+. -.+||||||||++|||||+++|+|||||||||+||.++...+.+.
T Consensus 1317 -~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~ 1395 (1490)
T TIGR01271 1317 -QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT 1395 (1490)
T ss_pred -CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 12345677788888876543332 237999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++.. .++|||+|+|.++.+.. ||||+||+++.. ...|+|.+++..
T Consensus 1396 L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~i--vE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1396 LKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSV--KQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEE--EEeCCHHHHHcC
Confidence 99863 47999999999998876 999999996554 356999999864
No 40
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.3e-47 Score=381.99 Aligned_cols=231 Identities=30% Similarity=0.446 Sum_probs=198.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|.+|+|. +..+. ...++|+|
T Consensus 9 s~~y~~-~~il~~ls~~i~~G-----~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 9 SFGYGG-KPILDDLSFSIPKG-----EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEECC-eeEEecceEEecCC-----cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 888985 45789999999998 68999999999999999999999999999986 22221 23699999
Q ss_pred CcCCCCCcCcHHHHHHhh-hc--cCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQK-IR--DSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~-~~--~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|.....+..||+|.+... .+ ..+ .+.+.+.++|+.+++.++.++++.+|||||||||.|||||+++|++|||
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 998777889999987542 11 112 1334678889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecce
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDI 570 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~ 570 (605)
||||++||+.++.+++++++++.+++|.|||+|+||+++|.++||++++|+++.. .+.|+|+++++..+. -..++++
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i--~a~G~p~evlT~e~l~~Vygv~~ 240 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI--VAQGTPEEVLTEENLREVYGVDA 240 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE--EeecCcchhcCHHHHHHHhCCce
Confidence 9999999999999999999999888899999999999999999999999997543 578999999998652 3457888
Q ss_pred EEEecCCCCcceeecCC
Q 040300 571 TFRRDPTNFRPRINKLD 587 (605)
Q Consensus 571 ~~~~~~~~~rpr~n~~~ 587 (605)
....+|.+++|.+.+..
T Consensus 241 ~~~~~~~~~~p~~i~~~ 257 (258)
T COG1120 241 DVIEDPDSGKPVVIPLG 257 (258)
T ss_pred EEEEcCCCCceEEecCC
Confidence 88889988888887653
No 41
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-46 Score=356.10 Aligned_cols=204 Identities=24% Similarity=0.320 Sum_probs=174.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
..+|++. .++++++|++.+| |+++|+||+|||||||||+|+|+.+|++|++. +.... +.++|++
T Consensus 9 ~K~fg~~-~VLkgi~l~v~~G-----evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 9 SKSFGDK-EVLKGISLSVEKG-----EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred eEEeCCe-EEecCcceeEcCC-----CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCee
Confidence 6778764 4799999999998 78999999999999999999999999999986 21111 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhh---ccC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISPKFQSTVRHLLHQKI---RDS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~---~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+...+..+||.+|+.... ... ......+.++|+.+||.+..+.+|.+|||||||||||||||+++|+++|+||
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 99998888899999875421 111 1123567789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+|||+...+++++++++++ .|.|+++|||+|.||..+||||+.|+++.. ...++|++++...
T Consensus 163 PTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~i--ie~g~p~~~f~~p 227 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKI--IEEGPPEEFFDNP 227 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEE--EEecCHHHHhcCC
Confidence 9999999999999999999965 599999999999999999999999997643 3557999988763
No 42
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=368.14 Aligned_cols=204 Identities=28% Similarity=0.449 Sum_probs=177.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----CcceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----PEFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~~~~i~y~~q~~ 422 (605)
++.|.+. .++++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +... +..+|||+||..
T Consensus 11 ~v~y~~~-~vl~~i~l~v~~G-----~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 11 TVSYGNR-PVLEDISLSVEKG-----EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EEEECCE-eeeeccEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc
Confidence 8888865 5899999999998 68999999999999999999999999999986 2211 235799999975
Q ss_pred --CCCCcCcHHHHHHhhhcc--C-C-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 423 --SPKFQSTVRHLLHQKIRD--S-Y-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 423 --~~~~~~tv~~~~~~~~~~--~-~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
...|+.||++++...... . + .+.+.+.++|+.+|+.++.++++++|||||+|||.|||||+++|++||||
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 345788999988653111 1 1 23467899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
|||+|+|+.++..++++|+++.++ |+||++||||+..+..++|+|+.+..+. .+.|+|+++++..+
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~---~~~G~~~~~~~~~~ 230 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHL---IASGPPEEVLTEEN 230 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCee---EeccChhhccCHHH
Confidence 999999999999999999999776 9999999999999999999999998765 57899999988744
No 43
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=353.23 Aligned_cols=192 Identities=29% Similarity=0.373 Sum_probs=170.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc--cCcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE--IPEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~--~~~~~i~y~~q~~~~ 424 (605)
++.|+. ..++++++|++.+| |+++|+||+|||||||||+|+|+.+|++|++. +.. -+...++|++|+...
T Consensus 10 ~~~f~~-~~vl~~i~L~v~~G-----EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 10 SKSFGG-VEVLEDINLSVEKG-----EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83 (248)
T ss_pred EEEeCc-eEEeccceeEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcc
Confidence 667776 56899999999998 68999999999999999999999999999975 222 245579999999888
Q ss_pred CCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
.+..||.+|+....... ......+.++++.+||.++.+++|.+|||||||||||||||+.+|++||||||+++||.
T Consensus 84 lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 84 LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 77889999986533221 11234688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
-+|..+.+.|.++.++.++||++||||+++|.++||||++|.++|+
T Consensus 164 lTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~ 209 (248)
T COG1116 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPG 209 (248)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCc
Confidence 9999999999999998899999999999999999999999998774
No 44
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.9e-44 Score=363.91 Aligned_cols=254 Identities=69% Similarity=1.188 Sum_probs=210.7
Q ss_pred ccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 78 DLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 78 ~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++.+++|+|+.+...+++++.+.+||+++|+|+||||||||+|+|+|+++|+.|++...+.+......+.|.++..+..
T Consensus 1 ~~~~~~~~~y~~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 1 ELEDEPVHRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred CcccCcceeecCcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 35678999998765578888878999999999999999999999999999999999964444443334466666554432
Q ss_pred HHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 158 RILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 158 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
..........+.+|+....+..+.+++.+.+.....+..+.++++.+||.+..++.+.+|||||+||++||+||+.+|++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 22211222334467766666544455554444444556788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCC
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFV 317 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~ 317 (605)
+||||||++||+..+..+.++|+++.++++|||+||||++++..+||+|++|+|+++++|++..|.++++++|.|.++++
T Consensus 161 lllDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLDGYL 240 (255)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcceeeecCccHHHHHHHHHhccC
Confidence 99999999999999999999999998778999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccc
Q 040300 318 PTENLRFRDESLTF 331 (605)
Q Consensus 318 ~~e~~~~r~~~~~~ 331 (605)
|.++++++..+..|
T Consensus 241 ~~~~~~~~~~~~~~ 254 (255)
T cd03236 241 PTENMRFREESIEF 254 (255)
T ss_pred CccceeecccccCc
Confidence 99999998877654
No 45
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=1.3e-42 Score=403.72 Aligned_cols=336 Identities=24% Similarity=0.312 Sum_probs=224.9
Q ss_pred HHHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE
Q 040300 195 DMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271 (605)
Q Consensus 195 ~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv 271 (605)
.++ ++++.+||.++ ++|++.+|||||+|||+||++|+.+| ++|||||||++||+..+..+.++|++|++.|.|||+
T Consensus 468 ~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIv 546 (943)
T PRK00349 468 ERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIV 546 (943)
T ss_pred HHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 444 37888999877 89999999999999999999999997 999999999999999999999999999888999999
Q ss_pred EecCHhHHHhhcCEEEEEeCccccc-cccccchhhHHH-------HHhhhcCCCCCcccccccccccccccCCCcchhhh
Q 040300 272 VEHDLSVLDYLSDFICCLYGKPGAY-GVVTLPFSVREG-------INIFLAGFVPTENLRFRDESLTFRVAETPQESAEE 343 (605)
Q Consensus 272 vsHdl~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~~-------i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~ 343 (605)
||||++++. .||+|++|..+.|.. |.+....+..+. ...|+.+.... ............
T Consensus 547 VeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~~~l~~~~l~~~~~~--------~~~~~~~~~~~~---- 613 (943)
T PRK00349 547 VEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMKNPNSLTGQYLSGKKKI--------EVPKERRKGNGK---- 613 (943)
T ss_pred EeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhcChhheeehhhcccccc--------cccccccCCCcc----
Confidence 999999987 599999993222221 111111111111 00111111000 000000000000
Q ss_pred hhhheeeecCCce-eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH---------cCCCCCe------e----
Q 040300 344 IETYARYKYPTMV-KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA---------GLLKPDS------V---- 403 (605)
Q Consensus 344 ~~~~~~~~y~~~~-~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~---------Gl~~p~~------G---- 403 (605)
.+...+.. ..+++++|++..| |+++|+|+||||||||++.+. +...+.. |
T Consensus 614 -----~L~v~~l~~~~L~~isl~Ip~G-----eivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~ 683 (943)
T PRK00349 614 -----FLKLKGARENNLKNVDVEIPLG-----KFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHL 683 (943)
T ss_pred -----eEEecCCccCCcCceEEEEeCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCC
Confidence 11111111 1367888888777 789999999999999998763 1110000 0
Q ss_pred --------------------eeecc---------ccC-cceeEeecCcCCCCC---------------------------
Q 040300 404 --------------------EDSDV---------EIP-EFNVSYKPQKISPKF--------------------------- 426 (605)
Q Consensus 404 --------------------~i~~~---------~~~-~~~i~y~~q~~~~~~--------------------------- 426 (605)
+..+. ..+ ....+|.++..++..
T Consensus 684 ~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 763 (943)
T PRK00349 684 DKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 763 (943)
T ss_pred CceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCcccc
Confidence 00000 000 001222222211110
Q ss_pred ---------------------------cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHH
Q 040300 427 ---------------------------QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 427 ---------------------------~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvai 478 (605)
.+|+.+.+... ..........+.++.++|.. .+++++.+|||||+|||+|
T Consensus 764 C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f--~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~L 841 (943)
T PRK00349 764 CDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFF--EAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKL 841 (943)
T ss_pred CccccCccccccceEEEECCCCHHHHhcCcHHHHHHHH--HhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHH
Confidence 12222222110 00011122356788889986 4799999999999999999
Q ss_pred HHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe------CCcceee
Q 040300 479 CLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE------GQPSVDC 549 (605)
Q Consensus 479 A~aL~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~------g~~~~~~ 549 (605)
|++|+.+| ++|||||||+|||+..+..++++|+++.+ .|.|||+||||++++. .||+|++|. ++ ...
T Consensus 842 AraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G--~Iv 917 (943)
T PRK00349 842 AKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGG--EIV 917 (943)
T ss_pred HHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCC--EEE
Confidence 99999999 99999999999999999999999999864 5899999999999986 699999993 32 334
Q ss_pred ecCChhhhhcc
Q 040300 550 VANAPQSLLTG 560 (605)
Q Consensus 550 ~~~~p~~~~~~ 560 (605)
+.++|+++...
T Consensus 918 ~~Gt~~el~~~ 928 (943)
T PRK00349 918 ATGTPEEVAKV 928 (943)
T ss_pred EeCCHHHHHhC
Confidence 67888888754
No 46
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=4e-42 Score=414.07 Aligned_cols=335 Identities=22% Similarity=0.305 Sum_probs=228.2
Q ss_pred HHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCH
Q 040300 200 LCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276 (605)
Q Consensus 200 ~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl 276 (605)
.+..+||.++ ++|.+.+|||||+|||+||+||+.+| ++|||||||++||+..+..+.++|+++++.|.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4557799877 79999999999999999999999999 89999999999999999999999999988899999999999
Q ss_pred hHHHhhcCEEEEEeCccccc-cccccchhhHH-------HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhhe
Q 040300 277 SVLDYLSDFICCLYGKPGAY-GVVTLPFSVRE-------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYA 348 (605)
Q Consensus 277 ~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~-------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 348 (605)
++ ..+||+|++|..+.+.. |.+....+..+ ....|+.+..... .. .. ......
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~~~~~l~~~~l~~~~~~~---~~-~~-----~~~~~~--------- 599 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSDSLTAKYLRQELTIP---IP-EK-----RTNSLG--------- 599 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEEEecCHHHHhhChHHHHHHHhcCccccc---Cc-cc-----ccCCCC---------
Confidence 95 57899999995332211 11111111111 1122222111000 00 00 000000
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHH---------HHHcCCCCCee----ee---------
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIR---------MLAGLLKPDSV----ED--------- 405 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk---------~L~Gl~~p~~G----~i--------- 405 (605)
.+...+. ...+++++|++..| |+++|+|+||||||||++ .|.|...+..+ .+
T Consensus 600 ~L~l~~~~~~~Lk~isl~Ip~G-----eiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQs 674 (1809)
T PRK00635 600 TLTLSKATKHNLKDLTISLPLG-----RLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRD 674 (1809)
T ss_pred eEEEeccccCCccceEEEEcCC-----cEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCC
Confidence 1111111 12478888888887 789999999999999999 56665322100 11
Q ss_pred -----------e--c--cccC--------cceeE-----eecCc--------------------CC--------------
Q 040300 406 -----------S--D--VEIP--------EFNVS-----YKPQK--------------------IS-------------- 423 (605)
Q Consensus 406 -----------~--~--~~~~--------~~~i~-----y~~q~--------------------~~-------------- 423 (605)
. + ..+. ....+ +.++. ..
T Consensus 675 pigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e 754 (1809)
T PRK00635 675 LPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQ 754 (1809)
T ss_pred CCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHH
Confidence 0 0 0000 00000 11110 00
Q ss_pred ----CCCcCcHHHHHHhhhccC---CCC----HHHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHc---cCCCE
Q 040300 424 ----PKFQSTVRHLLHQKIRDS---YTH----PQFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLG---KPADI 488 (605)
Q Consensus 424 ----~~~~~tv~~~~~~~~~~~---~~~----~~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~---~~p~l 488 (605)
.....||.|++....... +.. ...+ ++++.+++.++ +++++.+|||||+|||+||++|+ ++|++
T Consensus 755 ~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 755 VLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred HHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 001235666654332211 111 1223 57888999887 89999999999999999999997 69999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe--CC--cceeeecCChhhhhccc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--GQ--PSVDCVANAPQSLLTGM 561 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--g~--~~~~~~~~~p~~~~~~~ 561 (605)
|||||||+|||+.++..++++|+++.+ .|.|||+||||++++ .+||++++|. |+ .+.....++|+++...+
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~~ 908 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIHLH 908 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHhcc
Confidence 999999999999999999999999864 599999999999999 7899999995 21 13345678999987643
No 47
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=335.35 Aligned_cols=203 Identities=27% Similarity=0.398 Sum_probs=157.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|+|.|| .++||.+. .|.+++ .+.+||+++|+||||||||||||+|.|+.+|++|+|...
T Consensus 2 mi~i~~l--------~K~fg~~~-VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~---------- 62 (240)
T COG1126 2 MIEIKNL--------SKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD---------- 62 (240)
T ss_pred eEEEEee--------eEEeCCeE-EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEEC----------
Confidence 4666664 55888763 577777 578999999999999999999999999999999998522
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhh------hhcCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVG------QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~------~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
|..+..-. .+..-.-+..+..|....+|.. +..++- .-..+.+.++++.++|+++||.+..|.+|.+||||
T Consensus 63 -g~~~~~~~-~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGG 140 (240)
T COG1126 63 -GEDVGDKK-DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGG 140 (240)
T ss_pred -CEeccchh-hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcH
Confidence 21110000 0001111222333444444432 111111 01234566788999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||||||+++|++++||||||.|||+...++.+++++|+++|.|+|+|||++.|+..+||||+.|+++
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G 212 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQG 212 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999754
No 48
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=343.55 Aligned_cols=210 Identities=27% Similarity=0.370 Sum_probs=180.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|.+ .+++++++|++..| |+++++||+||||||+||||.++++|++|+|. +..+. +++|||+-
T Consensus 8 sk~y~~-~~av~~v~l~I~~g-----ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 8 SKRYGN-KKAVDDVNLTIEEG-----EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred ehhcCC-ceeeeeeeEEecCC-----eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 667775 45789999999999 67999999999999999999999999999986 22222 34799999
Q ss_pred CcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 420 QKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
|.+...+.+||.+|+..-.. ..+. ....+.++|+.+||+ ++.+++|++|||||||||.+||||+.+|+++|+||
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE 161 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE 161 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC
Confidence 99998889999998753111 1121 235688999999997 48999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc-cccce
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM-NLFLS 566 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~-~~~l~ 566 (605)
|+++|||-+|..+.+.+.++.++.++|||+||||+++|..++|||.+|+++.. ...++|++++... |.|++
T Consensus 162 PFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i--~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI--VQYDTPDEILANPANDFVE 233 (309)
T ss_pred CccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeE--EEeCCHHHHHhCccHHHHH
Confidence 99999999999999999999988999999999999999999999999996554 4568999998764 67776
No 49
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-41 Score=397.59 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=155.2
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKF 426 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~ 426 (605)
..++++++|++.+| |.+||+|..|||||||+.+|..+..|.+|+|. +.++. +.+++.+||++. .|
T Consensus 1153 p~VLk~is~~I~p~-----eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv-LF 1226 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPG-----EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV-LF 1226 (1381)
T ss_pred cchhcCceEEEcCC-----ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc-ee
Confidence 34577888888777 79999999999999999999999999999985 33332 246999999975 58
Q ss_pred cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-----------hccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-----------MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 427 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
.+|+|.|+.-. ..+. .+.+.++|+..++.+. ...--.++|-||||.|+|||||+++.+||+|||.|
T Consensus 1227 sGTvR~NLDPf--~e~s-D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1227 SGTVRFNLDPF--DEYS-DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred cCccccccCcc--cccC-HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 89999987421 1122 2344455555555432 22334679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~ 563 (605)
|++|+++-..+.+.|++-- .+.|||.|-|.++.+.. ||||+||+.+.. ...++|.++++..+-
T Consensus 1304 AsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~TVmd-~DrVlVld~G~v--~EfdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEF--KDCTVLTIAHRLNTVMD-SDRVLVLDAGRV--VEFDSPAELLSDKDS 1366 (1381)
T ss_pred ccCChHHHHHHHHHHHHHh--cCCeEEEEeeccchhhh-cCeEEEeeCCeE--eecCChHHHHhCCcc
Confidence 9999999999999999854 47999999999999987 999999996554 467999999987543
No 50
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.4e-41 Score=391.06 Aligned_cols=334 Identities=23% Similarity=0.322 Sum_probs=214.5
Q ss_pred HHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 040300 199 DLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275 (605)
Q Consensus 199 ~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHd 275 (605)
+.+..+||..+ ++|++.+|||||+||++||++|+.+| ++|||||||++||+..+..+.++|++|.+.|.|||+||||
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 34677899876 79999999999999999999999986 8999999999999999999999999998889999999999
Q ss_pred HhHHHhhcCEEEEEeCccccc-cccccchhhHHHHH---hhhcCCCCCcccccccccccccccCCCcchhhhhhhheeee
Q 040300 276 LSVLDYLSDFICCLYGKPGAY-GVVTLPFSVREGIN---IFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYK 351 (605)
Q Consensus 276 l~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~~i~---~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (605)
++++. .||+|++|..+.|.. |.+....+..+... .....++.... . .... +...+... . .+.
T Consensus 549 ~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~~~~lt~~~l~~~~-~---~~~~-~~~~~~~~-------~-~l~ 614 (924)
T TIGR00630 549 EETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILANPDSLTGQYLSGKK-K---IEVP-KERRPGNG-------K-FLT 614 (924)
T ss_pred HHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhcCchheeeecccccc-c---cccc-ccccCCCc-------c-eEE
Confidence 99987 899999993222221 11111111111000 00000100000 0 0000 00000000 0 111
Q ss_pred cCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHH-HHH--------c-CCCCC-----ee--------eeec
Q 040300 352 YPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIR-MLA--------G-LLKPD-----SV--------EDSD 407 (605)
Q Consensus 352 y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk-~L~--------G-l~~p~-----~G--------~i~~ 407 (605)
..+. ...+++++|++..| |+++|+|+||||||||++ .|. + ...|. .| .|..
T Consensus 615 l~~~~~~~Lk~vsl~Ip~G-----eiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ 689 (924)
T TIGR00630 615 LKGARENNLKNITVSIPLG-----LFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQ 689 (924)
T ss_pred EEeCccCCcCceEEEEeCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCceEEEec
Confidence 1111 12477888888887 789999999999999997 332 1 11111 01 0000
Q ss_pred ccc-------------------------Cc-ceeEeecCcCCC-------------------------------------
Q 040300 408 VEI-------------------------PE-FNVSYKPQKISP------------------------------------- 424 (605)
Q Consensus 408 ~~~-------------------------~~-~~i~y~~q~~~~------------------------------------- 424 (605)
..+ +. ...+|-+...++
T Consensus 690 ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R 769 (924)
T TIGR00630 690 SPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKR 769 (924)
T ss_pred CCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCce
Confidence 000 00 000010000000
Q ss_pred -----------------CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHcc--
Q 040300 425 -----------------KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGK-- 484 (605)
Q Consensus 425 -----------------~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~-- 484 (605)
..++||.+.+... ..........++++.++|.. .+++++.+|||||+|||+||++|+.
T Consensus 770 ~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~--~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~ 847 (924)
T TIGR00630 770 YNRETLEVKYKGKNIADVLDMTVEEAYEFF--EAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 847 (924)
T ss_pred eChHHHhceeCCCCHHHHhCCcHHHHHHHH--HhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcC
Confidence 0011111111100 00001112346788889986 4799999999999999999999997
Q ss_pred -CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE------eCCcceeeecCChhhh
Q 040300 485 -PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY------EGQPSVDCVANAPQSL 557 (605)
Q Consensus 485 -~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~------~g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||+|||+..+..+.++|+++.+ .|.|||+||||++++. .||++++| +++. ..+.++|+++
T Consensus 848 ~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~--iv~~G~~~~l 923 (924)
T TIGR00630 848 TGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGT--IVASGTPEEV 923 (924)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCE--EEEeCCHHHh
Confidence 5999999999999999999999999999864 5899999999999985 69999999 3332 2456777664
No 51
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=356.31 Aligned_cols=210 Identities=29% Similarity=0.422 Sum_probs=181.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
...|++.. ++++++|++.+| |+++|+||||||||||||+|||+.+|++|++. +..+ ..++|++++|+
T Consensus 10 ~K~yg~~~-~l~~i~l~i~~G-----ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 10 RKSFGSFE-VLKDVNLDIEDG-----EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred EEEcCCce-eeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC
Confidence 67787643 688999999988 68999999999999999999999999999986 2222 24679999999
Q ss_pred CCCCCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
...++.+||++|+....+.. ....+.+.++.+.|+|++++++.|.+|||||||||||||||+++|+++|||||+|+
T Consensus 84 yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSn 163 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSN 163 (338)
T ss_pred ccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhH
Confidence 98888999999986543322 12346788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc-cccce
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM-NLFLS 566 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~-~~~l~ 566 (605)
||...|..+...|+++.++.+.|+|+||||..+|..+||||+||.++.. ...++|.++.... |.|..
T Consensus 164 LDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i--~Q~g~p~ely~~P~n~fVA 231 (338)
T COG3839 164 LDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI--QQVGTPLELYERPANLFVA 231 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCee--eecCChHHHhhCccchhhh
Confidence 9999999999999999888899999999999999999999999995433 4679999998653 55543
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=339.80 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=170.9
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKISP 424 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~~ 424 (605)
..+++++|++.+| ||+||+|.+|||||||+|++.++.+|++|++. +.++. +.+|++++|+...
T Consensus 20 ~al~~vsL~I~~G-----eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 20 TALDDVSLEIPKG-----EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred eeeccceEEEcCC-----cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 4789999999998 79999999999999999999999999999975 22211 2469999999888
Q ss_pred CCcCcHHHHHHhhhccC-C---CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIRDS-Y---THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
....||.+++.....-. . ...+.+.++++.+||.+..+++|.+|||||||||+|||||+.+|+|||.|||||+|||
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 77889999875422111 1 1235688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++...++++|+++.++.|.||++|||.|+.+..+||||.||+.+..+ ..|+..+++...
T Consensus 175 ~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv--E~G~v~~vF~~P 233 (339)
T COG1135 175 ETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV--EEGTVSEVFANP 233 (339)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE--EeccHHHhhcCc
Confidence 99999999999999999999999999999999999999999966543 457777776643
No 53
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=340.41 Aligned_cols=206 Identities=25% Similarity=0.352 Sum_probs=177.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc---c-----cCcceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV---E-----IPEFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~---~-----~~~~~i~y~ 418 (605)
+..|+.. .++++++|++.+| |.++++||||||||||||+|||++.|++|.|. +. + ....+|||+
T Consensus 9 ~~~~~~~-~a~~di~l~i~~G-----e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 9 KKRFGAF-GALDDISLDIKSG-----ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred hhhcccc-cccccceeeecCC-----cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 4455553 3577999999988 68999999999999999999999999999985 22 1 124579999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC------CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS------YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+|+....+.+||.+|+....+-. ......+.++|+.+.|+++.+++|.+|||||+|||||||||+.+|++||||
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD 162 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 162 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence 99988778899999986543211 123456889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
||+++||..-|.++.+-|+++..+.|.|.++||||.+++..+||||++|+++.+ ...++|.++++..|
T Consensus 163 EPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~I--eqvg~p~ev~~~P~ 230 (345)
T COG1118 163 EPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI--EQVGPPDEVYDHPA 230 (345)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCee--eeeCCHHHHhcCCC
Confidence 999999999999999999999888899999999999999999999999996554 35699999988764
No 54
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=339.05 Aligned_cols=205 Identities=28% Similarity=0.430 Sum_probs=158.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.| ++++|+.. -.|++++ .+.+|++++|+||||||||||+|+|.|+++|..|++...
T Consensus 4 ~i~v~n--------l~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~---------- 64 (254)
T COG1121 4 MIEVEN--------LTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF---------- 64 (254)
T ss_pred EEEEee--------eEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEc----------
Confidence 466666 45678754 3677777 468999999999999999999999999999999998521
Q ss_pred ccchhhhhHHHHHHHHHHHhhccccc---ccchhhhhchhh-------hhcC--chHHHHHHHHHHhhcCCchhhcccCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYV---DHIPKAVQGNVG-------QVLD--QKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~---~~~~~~~~~~v~-------~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
|...... ....++++.||.. ..+|..+...|. .++. .+.+++.++++|+.+|+.++.+|++.
T Consensus 65 -g~~~~~~-----~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~ 138 (254)
T COG1121 65 -GKPVRKR-----RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG 138 (254)
T ss_pred -ccccccc-----ccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc
Confidence 1110000 0012234445533 122322222111 0111 23457889999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcccc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGA 295 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~ 295 (605)
+|||||+|||.|||||+++|++|+|||||+++|+.++..++++|++|+++|+||++||||+..+...+|+|++|.+....
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~ 218 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA 218 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEe
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999876655
Q ss_pred ccc
Q 040300 296 YGV 298 (605)
Q Consensus 296 ~g~ 298 (605)
+|.
T Consensus 219 ~G~ 221 (254)
T COG1121 219 SGP 221 (254)
T ss_pred ccC
Confidence 553
No 55
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-41 Score=336.03 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=174.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+|.|++....+++++|++.+| |+++|+|+||||||||+++|+|+++|++|.+. +.... ..++||+
T Consensus 10 ~~~y~~~~~~l~~v~~~i~~G-----e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~V 84 (235)
T COG1122 10 SFRYPGRKAALKDVSLEIEKG-----ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLV 84 (235)
T ss_pred EEEcCCCceeeeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEE
Confidence 788877656789999999988 68999999999999999999999999999974 22111 3469999
Q ss_pred cCcCCCC-CcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISPK-FQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~~-~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++... +..||.+.+....... .. ....+.++++.+++.+++++++.+|||||+||||||.+|+++|++|||||
T Consensus 85 fQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 85 FQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred EECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 9997543 5678988765432221 11 23567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+||+.++..++++++++..+.|+|+|++|||++++..+|||+++|+.+.. ...|+|.++++..
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i--~~~g~p~~i~~~~ 230 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI--LADGDPAEIFNDA 230 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE--eecCCHHHHhhhh
Confidence 99999999999999999999877689999999999999999999999996543 5678899888763
No 56
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.7e-41 Score=328.42 Aligned_cols=183 Identities=26% Similarity=0.365 Sum_probs=157.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------CcceeEeecCcCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNVSYKPQKIS 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i~y~~q~~~ 423 (605)
.++++++|++.+| |+++|+||+||||||||++|.|+.+|++|.+. +.+. ....|||++|+..
T Consensus 19 ~~L~~v~l~i~~G-----e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 19 EALKDVNLEIEAG-----EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred EecccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 4688999999988 68999999999999999999999999999864 2211 1235999999988
Q ss_pred CCCcCcHHHHHHhhh--ccCC--CCHHHHHHHHhhcCCchhhc-cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 424 PKFQSTVRHLLHQKI--RDSY--THPQFVSDVMKPLLIEQLMD-QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~--~~~~--~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
....+||.|++.... .... .....+.++++.+|+.+..+ ++|.+|||||||||||||||+.+|+++|.||||.+|
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL 173 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC
Confidence 888899999976421 1111 12456778999999997666 889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|.++...++++++++.++.|+|+|+||||...+. +|||++.+.++.
T Consensus 174 D~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~ 219 (226)
T COG1136 174 DSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGK 219 (226)
T ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCe
Confidence 9999999999999998888999999999999887 699999998643
No 57
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=352.42 Aligned_cols=205 Identities=25% Similarity=0.312 Sum_probs=179.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+..|++ ..++++++|++.+| |+++|+||||||||||||+|||+..|++|+|. +..+ .++.|++++|+
T Consensus 12 ~k~yg~-~~av~~isl~i~~G-----ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~ 85 (352)
T COG3842 12 SKSFGD-FTAVDDISLDIKKG-----EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQS 85 (352)
T ss_pred eeecCC-eeEEecceeeecCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecC
Confidence 677874 45789999999998 68999999999999999999999999999885 2222 24679999999
Q ss_pred CCCCCcCcHHHHHHhhhccC--CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS--YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~--~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
...++.+||.+|+....+.. .. ....+.++++.++++++.+++|.+|||||||||||||||+.+|++||||||.+
T Consensus 86 YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 86 YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred cccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 88888899999986544411 11 23478899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||.+-|.++..-|+++.++.|.|.|+||||.++|..+||||+||+.+.+ ...++|+++....
T Consensus 166 aLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I--~Q~gtP~eiY~~P 228 (352)
T COG3842 166 ALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI--EQVGTPEEIYERP 228 (352)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCce--eecCCHHHHhhCc
Confidence 99999999999999999988999999999999999999999999997654 4569999998765
No 58
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.8e-41 Score=325.90 Aligned_cols=210 Identities=25% Similarity=0.316 Sum_probs=178.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
.++|++. ..+++++|++.+| |+++|+||+|||||||+|+|.|+++|++|+|. +.+++ ..++|
T Consensus 15 ~~~fG~~-~Ild~v~l~V~~G-----ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 15 TKSFGDR-VILDGVDLDVPRG-----EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMG 88 (263)
T ss_pred eeecCCE-EEecCceeeecCC-----cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhee
Confidence 7778764 4799999999998 68999999999999999999999999999986 22222 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhccCC-CCH----HHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRDSY-THP----QFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~~~-~~~----~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+++|.-..+..+||+||+....+... ... ..+..-++.+||... .+++|++||||+++|||||||++.+|+|++
T Consensus 89 vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~ 168 (263)
T COG1127 89 VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168 (263)
T ss_pred EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE
Confidence 99999877778899999865333221 112 334556788999976 999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccce
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLS 566 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~ 566 (605)
+||||+||||.+...+.++|+++.+.-|.|+++||||++.+..+|||++++.++.. .+.|+|+++.+..+.+++
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv--~~~Gt~~el~~sd~P~v~ 242 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV--IAEGTPEELLASDDPWVR 242 (263)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE--EEeCCHHHHHhCCCHHHH
Confidence 99999999999999999999999888899999999999999999999999986553 578999999998765554
No 59
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=324.42 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=168.7
Q ss_pred eeecCCce---eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------ccee
Q 040300 349 RYKYPTMV---KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~---~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i 415 (605)
++.|+... ..+++++|++.+| |++||+|++|||||||.|+|+|+.+|++|+|. +.... ...|
T Consensus 10 ~~~y~~~~~~~~~l~~VS~~i~~G-----e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~V 84 (252)
T COG1124 10 SIVYGGGKFAFHALNNVSLEIERG-----ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPV 84 (252)
T ss_pred EEEecCCcchhhhhcceeEEecCC-----CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccce
Confidence 56666543 3688999999988 79999999999999999999999999999986 22211 2358
Q ss_pred EeecCcCC--CCCcCcHHHHHHhhhccC-C-CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 416 SYKPQKIS--PKFQSTVRHLLHQKIRDS-Y-THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 416 ~y~~q~~~--~~~~~tv~~~~~~~~~~~-~-~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
-+++|++. ..+..||.+.+....... . ...+.+.++++.+||. .+++++|.+|||||+|||||||||+.+|++||
T Consensus 85 QmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLI 164 (252)
T COG1124 85 QMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI 164 (252)
T ss_pred eEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEE
Confidence 89999864 334568888775433221 1 1234588999999998 68999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||+||+..+.+++++|.++.++++.|+|+||||+..+.++||||+||+.+..+ ...+..++.+.
T Consensus 165 lDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv--E~~~~~~l~~~ 232 (252)
T COG1124 165 LDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV--EIGPTEELLSH 232 (252)
T ss_pred ecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE--EeechhhhhcC
Confidence 999999999999999999999999999999999999999999999999999965543 33455555544
No 60
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-40 Score=333.52 Aligned_cols=196 Identities=31% Similarity=0.449 Sum_probs=156.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.+ +.+.+++ .+.+|++++|+||||||||||||+|+|+++|..|+|. +.|..+..+..+.+
T Consensus 7 ~ls~~y~~~-~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~-----------l~g~~i~~~~~kel 74 (258)
T COG1120 7 NLSFGYGGK-PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL-----------LDGKDIASLSPKEL 74 (258)
T ss_pred EEEEEECCe-eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-----------ECCCchhhcCHHHH
Confidence 467788854 6678887 4678999999999999999999999999999999984 55666665544433
Q ss_pred HHHHHHhhcccccccchh-hhhchh-------hhhcC--chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNV-------GQVLD--QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v-------~~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.+. .++.||....... .+...| ...+. ..++.+.++++++.+|+.++.+|.+.+|||||||||.||||
T Consensus 75 Ak~--ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKK--LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhh--EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 332 2444554321111 111111 01122 33455679999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+++|++|+||||||+||+..+.+++++++++.+ +|+|||+|.||++.+..+||++++|.+
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999995 499999999999999999999999974
No 61
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-40 Score=321.57 Aligned_cols=205 Identities=25% Similarity=0.305 Sum_probs=176.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
+..||+....+++++|++..| |+++|+||+|||||||||+|+|+..|++|++. +..+. +.++|
T Consensus 10 ~k~yp~~~~aL~~Vnl~I~~G-----E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 10 SKTYPGGHQALKDVNLEINQG-----EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred eeecCCCceeeeeEeEEeCCC-----cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 677987777899999999998 68999999999999999999999999999875 21111 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc----------cCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR----------DSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~----------~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
|++|+.......+|.+++..... ..+ .+...+-+.|+++||.+...++..+|||||||||+|||||++
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 99999888888899998753211 011 123456789999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|+++|.|||+|+|||.+...+++.|+++.++.|.|+|+..|++++|..+||||+-++.+.. .++|++.++...
T Consensus 165 ~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i--vfDg~~~el~~~ 238 (258)
T COG3638 165 QPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI--VFDGPASELTDE 238 (258)
T ss_pred CCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcE--EEeCChhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999986543 577888885544
No 62
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-39 Score=336.18 Aligned_cols=205 Identities=28% Similarity=0.381 Sum_probs=173.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+..|++...++++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ..++||+||
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~G-----ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPG-----EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCC-----eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 667773234789999999988 68999999999999999999999999999975 22221 235999999
Q ss_pred cCCCCCcCcHHHHHHhh--hccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQK--IRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~--~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
++.....+|++|++... .+... .....++++++.++|.+..++++.+||+||||||+||+||+.+|++|||||||+
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~ 165 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTS 165 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 98877889999987542 22211 124578899999999987789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.++.+.||+++||.++++..+||||++++++.. .+.+++.++...
T Consensus 166 GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~--~~~g~~~~l~~~ 227 (293)
T COG1131 166 GLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI--IAEGTPEELKEK 227 (293)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEE--EEeCCHHHHHHh
Confidence 99999999999999999776458999999999999999999999997553 466788887654
No 63
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=346.61 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=172.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|+.....+++++|++.+| |+++|+||||||||||+|+|+|+.+|++|++. +..+ ....++|++|+
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~G-----e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 10 RKSYDGKTQVIKGIDLDVADG-----EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred EEEeCCCCEEEeeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 677732234688999999888 78999999999999999999999999999985 2222 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
....+.+||.+++...... ... ....+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 8766678999988543221 111 124567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+|||+++|+++.. ...++|+++++.
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i--~~~g~~~~~~~~ 225 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA--EQIGTPVEVYEK 225 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EEECCHHHHHhC
Confidence 9999999999999998776799999999999999999999999986543 456888888654
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.6e-39 Score=341.55 Aligned_cols=205 Identities=20% Similarity=0.245 Sum_probs=171.6
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
++.|+. ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ..
T Consensus 8 sk~y~~~~~~~~~L~~vsl~i~~G-----ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~ 82 (343)
T TIGR02314 8 TKVFHQGTKTIQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARR 82 (343)
T ss_pred EEEECCCCcceEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhc
Confidence 666752 134789999999988 68999999999999999999999999999875 22221 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
+|+|+||+.......||.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iL 162 (343)
T TIGR02314 83 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL 162 (343)
T ss_pred CEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 699999997765568999987542211 111 1245678999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||++||+.++..++++|+++.++.|.|||+||||++.+..+||||++|+++.. ...+++.+++..
T Consensus 163 LlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~i--v~~g~~~~v~~~ 231 (343)
T TIGR02314 163 LCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL--IEQGTVSEIFSH 231 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHcC
Confidence 999999999999999999999999776699999999999999999999999997554 356888888754
No 65
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-40 Score=324.12 Aligned_cols=193 Identities=26% Similarity=0.328 Sum_probs=148.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
+++.|+.. -.|.+++ .+.+||+++||||||||||||||+|+|+.+|+.|++......-.....-.+..+|+
T Consensus 9 v~~~f~~~-~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~------- 80 (248)
T COG1116 9 VSKSFGGV-EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE------- 80 (248)
T ss_pred eEEEeCce-EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc-------
Confidence 45566653 3566666 46899999999999999999999999999999999742110000000011222232
Q ss_pred HHHHHhhcccccccchhh-hhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPKA-VQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~-~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
...+|.. +..+|.-. ..+.+.++++.++++.+||.+..++++++|||||||||||||||+.+|
T Consensus 81 -----------~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 81 -----------DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred -----------CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCC
Confidence 2222321 11222111 123344568999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccc
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPG 294 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~ 294 (605)
++|+||||+++||..+|..+.+.+.++.++ ++||++||||++++-+++|||++|..+|+
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~ 209 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPG 209 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCc
Confidence 999999999999999999999999999864 89999999999999999999999988774
No 66
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-39 Score=324.06 Aligned_cols=203 Identities=26% Similarity=0.332 Sum_probs=166.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++
T Consensus 7 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 7 TKSFGG-RTVLKGVDLDVRRG-----EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 677765 34689999999888 78999999999999999999999999999875 22111 23589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc--CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+||+.......|+.+++...... .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999987655557999987542111 1111 23467789999999989999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||++||+.++..++++|+++.++.+.|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 226 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI--VAEGTPEELRA 226 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeE--EEecCHHHHcC
Confidence 9999999999999999999998654589999999999999999999999986543 34567776654
No 67
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=4.7e-39 Score=345.59 Aligned_cols=226 Identities=27% Similarity=0.408 Sum_probs=182.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|++
T Consensus 10 s~~y~~-~~vL~~vs~~i~~G-----eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 10 SVEFGD-TTVLDGVDLSVREG-----SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred EEEECC-EEEEEeeEEEECCC-----CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 778876 45789999999888 78999999999999999999999999999885 22211 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc---CC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRD---SY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~---~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+.+|+++++...... .+ .+...+.++++.+++.++.++++.+|||||||||+|||||+++|++|||
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 998777889999987542110 11 1234578899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecce
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDI 570 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~ 570 (605)
||||+|||+.++..++++|+++.+ .+.|||++|||++++..+|||+++|+++.. ...++|+++++..+. -+.....
T Consensus 164 DEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~i--v~~G~~~ev~~~~~l~~~~~~~~ 240 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRV--RAAGPPADVLTADTLRAAFDART 240 (402)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEecCHHHHhCcHHHHHHhCCce
Confidence 999999999999999999999965 589999999999999999999999986543 457899998775421 1112233
Q ss_pred EEEecCCCCccee
Q 040300 571 TFRRDPTNFRPRI 583 (605)
Q Consensus 571 ~~~~~~~~~rpr~ 583 (605)
.+..++.++.+.+
T Consensus 241 ~v~~~~~~~~~~~ 253 (402)
T PRK09536 241 AVGTDPATGAPTV 253 (402)
T ss_pred EEEecCCCCceEE
Confidence 3445666666555
No 68
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-40 Score=310.34 Aligned_cols=205 Identities=26% Similarity=0.326 Sum_probs=172.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---cC---cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---IP---EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---~~---~~~i~y~~q 420 (605)
+.+|++....+++++|+++.| ||+||+|||||||||+||+|++++.|++|.+. +.+ .+ ..+||.++.
T Consensus 8 ~K~y~~~v~AvrdVSF~ae~G-----ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 8 TKSYGSKVQAVRDVSFEAEEG-----EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred hhhccCHHhhhhheeEEeccc-----eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecC
Confidence 567877666789999999999 68999999999999999999999999999875 111 11 346888886
Q ss_pred cCCCCCcCcHHHHHHhh--hccC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQK--IRDS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~--~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
....+..+|++|++... +... .......+++.+.|++.+.+|+.+.+||-|+||||+|||||+++|++|+|||||+
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 66666778999987532 1111 1224567889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+.++..+.+.|+++ ++.|++||++||+|+++..+||||++++.+.. ...++++.+....
T Consensus 163 GLDi~~~r~~~dfi~q~-k~egr~viFSSH~m~EvealCDrvivlh~Gev--v~~gs~~~l~~r~ 224 (245)
T COG4555 163 GLDIRTRRKFHDFIKQL-KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV--VLEGSIEALDART 224 (245)
T ss_pred CccHHHHHHHHHHHHHh-hcCCcEEEEecccHHHHHHhhheEEEEecCcE--EEcCCHHHHHHHH
Confidence 99999999999999997 45699999999999999999999999985443 4678888876653
No 69
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=309.83 Aligned_cols=227 Identities=25% Similarity=0.388 Sum_probs=189.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~~ 419 (605)
+++... ...+++++|++.+| |+++|+||||||||||||.|+|.+.|++|++. +... + ....+.+|
T Consensus 8 s~~~~G-r~ll~~vsl~~~pG-----ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 8 SYSLAG-RRLLDGVSLDLRPG-----EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred EEEeec-ceeccCcceeccCC-----cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 444443 23578999999888 78999999999999999999999999999875 2111 1 12478899
Q ss_pred CcCCCCCcCcHHHHHHhhh-ccC---C--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc------CCC
Q 040300 420 QKISPKFQSTVRHLLHQKI-RDS---Y--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK------PAD 487 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~-~~~---~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~------~p~ 487 (605)
|+.+..|..||.|.+.... ... . .+...++++|...++..+..+...+|||||||||.+||.|++ +++
T Consensus 82 Q~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 82 QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred cCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 9998889999999886532 211 1 234557889999999999999999999999999999999986 445
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc-ccce
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN-LFLS 566 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~-~~l~ 566 (605)
+|+||||||.||+.++..++++.++|+++ |..|+.|-||++++..+||||++|.++.. .+.|+|+++++... .-++
T Consensus 162 ~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv--~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 162 WLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRV--IASGSPQDVLTDETLERVY 238 (259)
T ss_pred eEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeE--eecCCHHHhcCHHHHHHHh
Confidence 99999999999999999999999999765 79999999999999999999999996543 57799999999854 3455
Q ss_pred ecceEEEecCCCCcceee
Q 040300 567 HLDITFRRDPTNFRPRIN 584 (605)
Q Consensus 567 ~~~~~~~~~~~~~rpr~n 584 (605)
+.++.+-++|...-|.|-
T Consensus 239 g~~~~V~~~P~~~~P~V~ 256 (259)
T COG4559 239 GADIRVGRHPARNIPLVL 256 (259)
T ss_pred CCceeeeeccCCCCCeee
Confidence 788999999998888764
No 70
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8.6e-39 Score=334.00 Aligned_cols=203 Identities=29% Similarity=0.365 Sum_probs=170.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ...++|+||
T Consensus 14 ~k~~~~~-~~l~~vsl~i~~G-----ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q 87 (306)
T PRK13537 14 EKRYGDK-LVVDGLSFHVQRG-----ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87 (306)
T ss_pred EEEECCe-EEEecceEEEeCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEec
Confidence 7778753 4789999999888 68999999999999999999999999999875 22221 246999999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++...... .... ...+.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 98766678999987532111 1111 2346688999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.+ .|.|||++||+++++..+||||++|+++.. ...++++++...
T Consensus 168 gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i--~~~g~~~~l~~~ 228 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRK--IAEGAPHALIES 228 (306)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhc
Confidence 9999999999999999854 589999999999999999999999986543 466888888654
No 71
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-39 Score=318.73 Aligned_cols=191 Identities=29% Similarity=0.373 Sum_probs=160.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+||+
T Consensus 7 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 7 SKTYGS-VRALDDLSLTVEPG-----EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred EEEeCC-eeeecceeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 677765 34689999999888 78999999999999999999999999999875 22211 2359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 7655567999887532111 111 123567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..++++|+++.++.|.|||++|||++++..+|||+++++++.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGR 208 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 999999999999999866558999999999999999999999998654
No 72
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.9e-39 Score=340.29 Aligned_cols=204 Identities=24% Similarity=0.311 Sum_probs=173.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ ....++|++|+
T Consensus 11 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~ 84 (353)
T TIGR03265 11 RKRFGAF-TALKDISLSVKKG-----EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQS 84 (353)
T ss_pred EEEeCCe-EEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6777753 3688999998888 78999999999999999999999999999885 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++....... .. ....+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 85 YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 87666789999886433211 11 134678899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.+.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i--~~~g~~~~~~~~ 225 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI--EQVGTPQEIYRH 225 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999998777799999999999999999999999996554 356888888764
No 73
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.1e-39 Score=315.82 Aligned_cols=190 Identities=27% Similarity=0.431 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+.
T Consensus 6 ~~~~~~~~~~l~~v~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 6 SFSYKKGTEILDDLSLDLYAG-----EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred EEEeCCcCceeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 667764123689999999888 78999999999999999999999999999875 22221 23599999985
Q ss_pred C-CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 423 S-PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 423 ~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
. ..+..|+.+++.............+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 3 234679999875422111122346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
++..+.++|+++.+ .|.|+|++|||++++..+|||+++|+++
T Consensus 161 ~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 161 NMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999864 4899999999999999999999999864
No 74
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-39 Score=339.54 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=173.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ...+++|++|+
T Consensus 13 ~~~~~~-~~~l~~isl~i~~G-----e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 13 TKRFGS-NTVIDNLNLTIKQG-----TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred EEEECC-eEEEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 677765 34688999999888 78999999999999999999999999999875 2221 13579999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++...... ... ....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 8766678999988643321 111 124677899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||.+++..+||||++|+++.. ...++|++++..
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i--~~~g~~~~~~~~ 227 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI--MQIGSPQELYRQ 227 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999776799999999999999999999999996543 356889888654
No 75
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=318.24 Aligned_cols=204 Identities=23% Similarity=0.347 Sum_probs=175.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+.+|+.. .++++++|++.+| ||++|+||||||||||+++|+|.++|++|++. +.++. +..|+.-
T Consensus 11 ~k~FGGl-~Al~~Vsl~v~~G-----ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 11 SKRFGGL-TAVNDVSLEVRPG-----EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred eeecCCE-EEEeceeEEEcCC-----eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceee
Confidence 6778765 4789999999998 68999999999999999999999999999986 22221 3458888
Q ss_pred cCcCCCCCcCcHHHHHHhhhc------c-----CC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH
Q 040300 419 PQKISPKFQSTVRHLLHQKIR------D-----SY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~------~-----~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
+|.+.+...+||.||+..... . .+ ...+.+.++|+.+||.+.++++.++||+|||+||.|||||
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL 164 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL 164 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH
Confidence 999988888999998754211 0 01 0124577899999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe-CCcceeeecCChhhhhccc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE-GQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~-g~~~~~~~~~~p~~~~~~~ 561 (605)
+.+|++||||||.+||.+....++.++|+++.++.|.||++|+|||..+..+||||+||+ |+. .+.|+|+++.+..
T Consensus 165 a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~---IAeG~P~eV~~dp 241 (250)
T COG0411 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV---IAEGTPEEVRNNP 241 (250)
T ss_pred hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC---cccCCHHHHhcCH
Confidence 999999999999999999999999999999977678999999999999999999999998 444 5789999998763
No 76
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9.2e-39 Score=317.44 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=158.9
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------ccee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i 415 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...+
T Consensus 8 ~~~~~~~~~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 8 SKAYPGGHQPALDNLNFHITKG-----EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEecCCCeeEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhc
Confidence 6777542 24689999998888 78999999999999999999999999999875 22211 1358
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997655567999987532111 111 124567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||||+|||+.++..+.++|+++.+ .+.|||+||||++++..+|||+++|+++
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 163 DEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRG 214 (216)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999854 4899999999999999999999999854
No 77
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-39 Score=299.82 Aligned_cols=203 Identities=29% Similarity=0.375 Sum_probs=173.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
.++|.... -.|++.+..| |+++|+||+|||||||+++|+|.+.|.+|++. +.+. ..+.+|+++|+
T Consensus 8 ~~~y~~~~---~~fdl~v~~g-----e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 8 RFSYGHLP---MRFDLTVPAG-----EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred EEeeCcce---EEEEEeecCC-----cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 67776532 2567777777 79999999999999999999999999999875 2221 24569999999
Q ss_pred CCCCCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
...+...||.+++....... ..+.+.++.++.++||..+.++.|.+|||||||||||||||+++-.|||||||+|+
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 88777889999986544332 22346788899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||.-|.+++.++.++..+++.|++||||..+.+..++||+++++.+.. ...++..+++.+.
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri--~~~g~~~~~~~~~ 221 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRI--AAQGSTQELLSGK 221 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEE--EeeccHHHHhccC
Confidence 9999999999999999999999999999999999999999999996553 4567777777653
No 78
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.4e-38 Score=338.61 Aligned_cols=204 Identities=24% Similarity=0.333 Sum_probs=172.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe--eeee--cccc---C--cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDS--DVEI---P--EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~--G~i~--~~~~---~--~~~i~y~~ 419 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++ |++. +..+ + ...++|++
T Consensus 12 ~~~~~~~-~~l~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 12 RVAYGAN-TVLDDLSLEIEAG-----ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEECCe-EEEeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 6777653 4689999999888 6899999999999999999999999999 9875 2222 1 24699999
Q ss_pred CcCCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
|+......+||++++....... .. ....+.++++.++|+++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 9987666789999886432211 11 1245778999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHA-KKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~-g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+..+..+.+.|+++.++. |.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i--~~~g~~~~~~~~ 229 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL--AAHGEPQALYDA 229 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999987665 79999999999999999999999986543 456888888765
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.8e-38 Score=315.66 Aligned_cols=190 Identities=25% Similarity=0.353 Sum_probs=158.2
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C--------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P--------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~--------~ 412 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + .
T Consensus 7 ~~~~~~~~~~~~il~~~s~~i~~G-----~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 7 SKTYGGGGEKVQALKGVSLSIEKG-----EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred EEEecCCCcceeEEeeeEEEEcCC-----CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 6677642 34689999998888 78999999999999999999999999999875 2211 1 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 3599999987655567999987542111 111 123567899999999989999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||++||+.++..+.++|+++.++.+.|||+||||++++. +||++++|+++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G 216 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG 216 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCC
Confidence 99999999999999999999999986545899999999999997 89999999754
No 80
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=337.85 Aligned_cols=204 Identities=26% Similarity=0.340 Sum_probs=172.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+
T Consensus 9 ~~~~~~~-~~l~~isl~i~~G-----e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 9 KKSFGRT-QVLNDISLDIPSG-----QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEeCCe-EEEEEeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 6677653 4689999999888 78999999999999999999999999999875 22221 2469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-----CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 422 ISPKFQSTVRHLLHQKIRD-----SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-----~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
......+||.+++...... ... ....+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7766678999987543211 111 12456789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+..+..+.+.|+++.++.+.|+|+||||++++..+||||++|+.+.. ...++|++++..
T Consensus 163 P~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i--~~~g~~~~i~~~ 227 (353)
T PRK10851 163 PFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI--EQAGTPDQVWRE 227 (353)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 99999999999999999999776689999999999999999999999986543 356888888654
No 81
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-38 Score=319.07 Aligned_cols=203 Identities=28% Similarity=0.358 Sum_probs=167.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 9 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 9 SKRFGD-FVALDDVSLDIPSG-----ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEEECC-EEeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 677875 34789999999888 78999999999999999999999999999875 2221 12359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CC----C---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SY----T---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+......|+.+++...... .. . ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 162 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 7655567999887532111 00 1 12345678999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||++||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 226 (239)
T cd03296 163 PFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI--EQVGTPDEVYD 226 (239)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EEecCHHHHhc
Confidence 99999999999999999998765589999999999999999999999986543 34567777654
No 82
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.2e-38 Score=336.45 Aligned_cols=197 Identities=24% Similarity=0.315 Sum_probs=168.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------cceeEeecCcCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNVSYKPQKIS 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i~y~~q~~~ 423 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 7 ~~l~~vs~~i~~G-----ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 7 KGVNDADLAIAKG-----EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred eeEEeeEEEEcCC-----CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4689999999888 78999999999999999999999999999885 22221 246999999987
Q ss_pred CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
..+.+||++++...... ... ....+.++++.++|+.+.++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 76678999987542211 111 12457789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..+.+.|.++.++.++|||+||||++++..+||||++|+++.. ...++|++++..
T Consensus 162 ~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~i--v~~g~~~ei~~~ 220 (363)
T TIGR01186 162 PLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI--VQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EeeCCHHHHHhC
Confidence 99999999999998766689999999999999999999999986543 456889988764
No 83
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-38 Score=314.52 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=163.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 7 VKKYGD-FEAVRGVSFRVRRG-----EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred EEEECC-EEeeeceeEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 666765 34688999998888 78999999999999999999999999999875 22111 135899999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+++++...... ... ....+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 97655557998877432111 111 12356789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
+||+.++..+.++|+++.++.+.|||++|||++++..+|||+++++++... ..+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~--~~~~~~~ 218 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII--AEGTPEE 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE--EeCChHH
Confidence 999999999999999987655899999999999999999999999865432 3355544
No 84
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.3e-38 Score=340.10 Aligned_cols=204 Identities=24% Similarity=0.299 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+|||||||||||++|+|+++|++|++. +..+ ....++|++|+
T Consensus 21 ~~~~~~~-~~l~~vsl~i~~G-----e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 21 SKSFDGK-EVISNLDLTINNG-----EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred EEEECCe-EEEeeeEEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence 6777653 3688999999888 78999999999999999999999999999885 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++...... .... ...+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 95 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 95 YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 8766678999988643221 1111 23567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||...+..+.+.|+++.++.|.|+|+||||.+++..+||||++|+++.. ...++|++++..
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i--~~~g~~~~i~~~ 235 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI--EQDGTPREIYEE 235 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999877799999999999999999999999997554 356788888754
No 85
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=319.52 Aligned_cols=202 Identities=24% Similarity=0.305 Sum_probs=165.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 7 ~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 81 (241)
T cd03256 7 SKTYPNGKKALKDVSLSINPG-----EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG 81 (241)
T ss_pred EEecCCccEEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE
Confidence 667764234689999999888 78999999999999999999999999999875 22211 13599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc---------C-C--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD---------S-Y--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~---------~-~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
|+||+....+..|+.+++...... . . .....+.++++.+++....++++.+|||||+|||+|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 161 (241)
T cd03256 82 MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161 (241)
T ss_pred EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 999997665567999887532110 0 0 112356778999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||++||+.++..+.++|+++.++.|.|||+||||++++..+||++++|+++.. ...++++++
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 232 (241)
T cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI--VFDGPPAEL 232 (241)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EeecCHHHh
Confidence 99999999999999999999999999998765689999999999999999999999986543 345677765
No 86
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.2e-39 Score=324.51 Aligned_cols=215 Identities=40% Similarity=0.648 Sum_probs=169.6
Q ss_pred EEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHH
Q 040300 85 HRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163 (605)
Q Consensus 85 ~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 163 (605)
+.|+ +|.|...+ .+++||++||+|+||||||||+++|+|+++|+.|++... |..
T Consensus 8 ~~~~--~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~-----------g~~------------ 62 (246)
T cd03237 8 KTLG--EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE-----------LDT------------ 62 (246)
T ss_pred cccC--cEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC-----------Cce------------
Confidence 4444 36665555 467999999999999999999999999999999998522 110
Q ss_pred HHHhhcccccccchhhhhchhhhhcCc-----hHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 164 LKAIIKPQYVDHIPKAVQGNVGQVLDQ-----KDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 164 ~~~~~~~q~~~~~~~~~~~~v~~~l~~-----~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
..+.+|+....+ ..++.+.+.. ........++++.++|.+.+++++.+|||||+|||+||+||+.+|++|
T Consensus 63 --i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 63 --VSYKPQYIKADY---EGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred --EEEecccccCCC---CCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 011122211100 0112111100 011234577899999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCC
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFV 317 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~ 317 (605)
||||||++||+.++..+.++|+++.++ ++|||+||||++++..+||++++|+|+++.+|....|.+.++++|.|+.
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~--- 214 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLK--- 214 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHH---
Confidence 999999999999999999999999764 8999999999999999999999999999999999999999999999886
Q ss_pred CCcccccccccccccc
Q 040300 318 PTENLRFRDESLTFRV 333 (605)
Q Consensus 318 ~~e~~~~r~~~~~~~~ 333 (605)
.+++.||.++..++.
T Consensus 215 -~~~~~~~~~~~~~~p 229 (246)
T cd03237 215 -NLDITFRRDPETGRP 229 (246)
T ss_pred -HCCCEEecCcccCCC
Confidence 567788877766543
No 87
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.2e-38 Score=317.70 Aligned_cols=202 Identities=23% Similarity=0.321 Sum_probs=165.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~-~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 7 TKRFGG-LVALDDVSFSVRPG-----EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred EEEECC-EEEecCceEEecCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 667765 34689999999888 68999999999999999999999999999875 22111 1348999
Q ss_pred cCcCCCCCcCcHHHHHHhhhcc--CC------------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 419 PQKISPKFQSTVRHLLHQKIRD--SY------------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~--~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
||+.......|+++++...... .. .....+.++++.+++.+..++++.+|||||+|||+|||||+.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9997655567999987432111 00 012356788999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 232 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRV--IAEGTPDEVRN 232 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEE--EeecCHHHhcc
Confidence 9999999999999999999999999999865 589999999999999999999999986543 34467776644
No 88
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.6e-38 Score=330.10 Aligned_cols=201 Identities=26% Similarity=0.333 Sum_probs=166.7
Q ss_pred ecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecCcC
Q 040300 351 KYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQKI 422 (605)
Q Consensus 351 ~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q~~ 422 (605)
+|++ ...+++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ...++|+||+.
T Consensus 2 ~y~~-~~~l~~vs~~i~~G-----e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 75 (302)
T TIGR01188 2 VYGD-FKAVDGVNFKVREG-----EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYA 75 (302)
T ss_pred eeCC-eeEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCC
Confidence 3544 34689999999888 78999999999999999999999999999875 22221 23599999997
Q ss_pred CCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 423 SPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+||
T Consensus 76 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 76 SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 666667999987532111 111 1235678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..++++|+++.+ .|.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 156 D~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRI--IAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHHh
Confidence 99999999999999864 489999999999999999999999986543 356888887654
No 89
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=338.02 Aligned_cols=203 Identities=27% Similarity=0.370 Sum_probs=170.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....++|++|+
T Consensus 10 ~~~~~~~-~vl~~vsl~i~~G-----e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 10 TKAYGDV-VISKDINLDIHEG-----EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEeCCe-EEEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 6777653 4689999999888 68999999999999999999999999999875 2221 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++...... .... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 7665678999987543211 1111 24577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.+.|+++.++.|.|+|+||||++++..+|||+++|+++.. ...++|++++.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i--~~~g~~~~i~~ 223 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV--AQVGKPLELYH 223 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHh
Confidence 9999999999999998766689999999999999999999999986543 35578888765
No 90
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-38 Score=314.67 Aligned_cols=189 Identities=28% Similarity=0.350 Sum_probs=158.7
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~ 421 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~~~~~~~il~~vs~~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~ 81 (220)
T cd03293 7 SKTYGGGGGAVTALEDISLSVEEG-----EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ 81 (220)
T ss_pred EEEcCCCCcceEEEeceeEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence 6667641 34689999999888 68999999999999999999999999999875 2222 12469999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 7654457999887532111 111 124567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
||+.++..++++|+++.++.+.|||+||||++++..+||++++|+
T Consensus 162 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 162 LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999866568999999999999999999999998
No 91
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.3e-38 Score=332.63 Aligned_cols=203 Identities=25% Similarity=0.359 Sum_probs=170.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |++||+||||||||||+++|+|+++|++|++. +.... ...++|+||
T Consensus 48 ~k~y~~~-~~l~~is~~i~~G-----ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 48 SKSYGDK-AVVNGLSFTVASG-----ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred EEEECCE-EEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence 7778753 4789999999888 78999999999999999999999999999875 22211 235999999
Q ss_pred cCCCCCcCcHHHHHHhh--hccCCC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQK--IRDSYT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++... ...... ....+.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 97766778999987531 111111 12345678999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.. .|.|||++|||++++..+||||++|+.+.. ...++++++...
T Consensus 202 gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i--~~~g~~~~l~~~ 262 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRK--IAEGRPHALIDE 262 (340)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhh
Confidence 9999999999999999865 599999999999999999999999986543 467888888654
No 92
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.2e-38 Score=310.88 Aligned_cols=190 Identities=23% Similarity=0.259 Sum_probs=160.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+
T Consensus 7 ~~~~~~-~~~l~~~~~~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 7 TKTYGK-KRVLDDISLHVKKG-----EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred EEEECC-eEeEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 667765 34789999998888 78999999999999999999999999999875 22221 2359999998
Q ss_pred CCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 422 ISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
....+..|+.+++.............+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 160 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHH
Confidence 76655789999875322111113456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
++..++++|+++.+ .+.|+|+||||++++..+||++++|+++.
T Consensus 161 ~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 161 GIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 99999999999865 58999999999999999999999998654
No 93
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=333.29 Aligned_cols=205 Identities=20% Similarity=0.282 Sum_probs=169.7
Q ss_pred eeecC--C-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYP--T-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~--~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
+++|+ + ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ..
T Consensus 8 ~~~y~~~~~~~~il~~vsl~i~~G-----ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 82 (343)
T PRK11153 8 SKVFPQGGRTIHALNNVSLHIPAG-----EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARR 82 (343)
T ss_pred EEEeCCCCCceEEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhc
Confidence 67776 2 234789999999888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
.++|++|+.......|+.+++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iL 162 (343)
T PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL 162 (343)
T ss_pred CEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 59999999776556899998754221 11111 235678999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||++||+.++..++++|+++.++.|.|||+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 163 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 231 (343)
T PRK11153 163 LCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL--VEQGTVSEVFSH 231 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 999999999999999999999998766689999999999999999999999986543 345777777643
No 94
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-38 Score=311.64 Aligned_cols=197 Identities=24% Similarity=0.379 Sum_probs=156.3
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|++. ..+++++ .+.+||++.++|||||||||+||+|.+++.|++|+|. +.|.++.++....+
T Consensus 6 nvsk~y~~~-~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~-----------i~g~~i~~~d~~~L 73 (309)
T COG1125 6 NVSKRYGNK-KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL-----------IDGEDISDLDPVEL 73 (309)
T ss_pred eeehhcCCc-eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE-----------ECCeecccCCHHHH
Confidence 355677743 4566666 5689999999999999999999999999999999984 44444444332222
Q ss_pred HHHHHHhhcccccccchhh-hhch---hhhh--cCchHHHHHHHHHHhhcCCc--hhhcccCCCCChHHHHHHHHHHHHc
Q 040300 161 EDNLKAIIKPQYVDHIPKA-VQGN---VGQV--LDQKDERDMKADLCTDLDLN--QVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~-~~~~---v~~~--l~~~~~~~~~~~~l~~l~L~--~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
... ..+..|.+..+|.. +..+ |-.+ +.+...+++++|+++.+||+ ++.+|++++|||||+|||-+||||+
T Consensus 74 Rr~--IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 74 RRK--IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHh--hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 222 23334544555543 1112 2222 24556678999999999997 4899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|+++++|||++.|||-.|..+.+.+.++.++ ++|||+||||++++..++|+|++|+++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G 212 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCC
Confidence 999999999999999999999999999999875 999999999999999999999999743
No 95
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.1e-38 Score=312.95 Aligned_cols=189 Identities=26% Similarity=0.412 Sum_probs=158.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~~~~ 424 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+...
T Consensus 6 ~~~~~~-~~~l~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 6 TVSYGG-HPVLEDVSFEVKPG-----EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred eeEECC-EEeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 667765 34689999999888 78999999999999999999999999999875 2111 12469999998653
Q ss_pred C--CcCcHHHHHHhhhccC------C--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 425 K--FQSTVRHLLHQKIRDS------Y--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 425 ~--~~~tv~~~~~~~~~~~------~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
. +..|+.+++....... . .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2 4479999875421110 0 1124567899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|++||+.++..+.++|+++.+ .+.|+|+||||++++..+|||+++|+++
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 999999999999999999865 5899999999999999999999999864
No 96
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.1e-38 Score=319.20 Aligned_cols=202 Identities=23% Similarity=0.307 Sum_probs=165.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 8 ~~~~~~~~~il~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (243)
T TIGR02315 8 SKVYPNGKQALKNINLNINPG-----EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIG 82 (243)
T ss_pred eeecCCCcceeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheE
Confidence 667762234689999999888 68999999999999999999999999999875 22211 23589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc----------CC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD----------SY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~----------~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
|+||+.......|+.+++...... .. .....+.++++.+++....++++.+|||||+|||+|||||+.
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (243)
T TIGR02315 83 MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ 162 (243)
T ss_pred EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999997665567999987432110 00 112356788999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||++||+.++..+.++|+++.++.|.|+|+||||++++..+||++++|+++.. ...++++++
T Consensus 163 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 233 (243)
T TIGR02315 163 QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI--VFDGAPSEL 233 (243)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE--EecCCHHHh
Confidence 99999999999999999999999999998665589999999999999999999999986543 345677765
No 97
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-38 Score=324.56 Aligned_cols=205 Identities=26% Similarity=0.355 Sum_probs=167.7
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cc
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EF 413 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~ 413 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ..
T Consensus 9 ~~~y~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13637 9 THIYMEGTPFEKKALDNVNIEIEDG-----EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83 (287)
T ss_pred EEECCCCCccccceeeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhh
Confidence 6677632 24688999998888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 414 NVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 414 ~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
.++|+||++. ..+..||.+++...... .... ...+.++++.+++. +..++++.+|||||+|||+|||||+.+|
T Consensus 84 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P 163 (287)
T PRK13637 84 KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEP 163 (287)
T ss_pred ceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCC
Confidence 5899999863 23567999987532111 1111 23567899999997 6889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|+.+.. ...++++++++.
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~ 235 (287)
T PRK13637 164 KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC--ELQGTPREVFKE 235 (287)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999999765689999999999999999999999986543 356888887664
No 98
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-38 Score=335.83 Aligned_cols=204 Identities=23% Similarity=0.329 Sum_probs=172.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+.+|++|++. +..+ ....++|++|+
T Consensus 26 ~~~~~~~-~~l~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 26 TKSFDGQ-HAVDDVSLTIYKG-----EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EEEECCE-EEEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6677653 4688899998888 78999999999999999999999999999875 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++....... .. ....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 87766789999986432211 11 124567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||.+++..+|||+++|+++.. ...++|++++..
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i--~~~g~~~~~~~~ 240 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKF--VQIGEPEEIYEH 240 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEE--EEEcCHHHHHhC
Confidence 9999999999999998777799999999999999999999999986543 356888888754
No 99
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-38 Score=297.17 Aligned_cols=192 Identities=21% Similarity=0.313 Sum_probs=166.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc--------cC--cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE--------IP--EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~--------~~--~~~i~ 416 (605)
+..|++...++.+++|++.+| |++-|+||+|||||||+|+|.+..+|++|++. +.+ ++ +.+||
T Consensus 8 ~k~Y~~g~~aL~~vs~~i~~G-----ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 8 SKAYPGGREALRDVSFHIPKG-----EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhcCCCchhhhCceEeecCc-----eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheee
Confidence 677888766899999999998 67999999999999999999999999999985 111 22 34699
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc--cC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR--DS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~--~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+++|+.....+.||+||+..... .. ......+.++|+.+||.+..+..|.+|||||||||+||||++.+|++||.|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec
Confidence 99999888888999999754322 11 112356788999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|||.+|||....++++++.++. ..|.||+|.|||.+.+..+-.|++.++.+..
T Consensus 163 EPTGNLDp~~s~~im~lfeein-r~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLFEEIN-RLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 (223)
T ss_pred CCCCCCChHHHHHHHHHHHHHh-hcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence 9999999999999999999985 5699999999999999999999999986553
No 100
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.3e-38 Score=310.21 Aligned_cols=190 Identities=32% Similarity=0.463 Sum_probs=157.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 6 ~~~~~~~~~~il~~vs~~i~~G-----~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 6 SFSYPDGARPALDDISLTIKKG-----EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred EEecCCCCeeeecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 6677641 24688999999888 78999999999999999999999999999875 22211 1358999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99864 24567999887532111 111 12356778999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||+|||+.++..+.+.|+++..+ +.|||+||||++++..+|||+++|+++
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999998654 899999999999999999999999753
No 101
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.5e-38 Score=312.76 Aligned_cols=190 Identities=24% Similarity=0.343 Sum_probs=158.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
+++|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 8 ~~~~~~~~~il~~is~~i~~G-----~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (214)
T TIGR02673 8 SKAYPGGVAALHDVSLHIRKG-----EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIG 82 (214)
T ss_pred eEEeCCCceeecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheE
Confidence 666742234689999999888 78999999999999999999999999999875 22111 13589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
|++|+.......|+.+++...... ... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD 162 (214)
T TIGR02673 83 VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD 162 (214)
T ss_pred EEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999987655567999887542111 111 1245678999999998899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||+|||+.++..+.++|+++.+ .+.|||+||||++++..+|||+++|+++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 99999999999999999999854 5899999999999999999999999753
No 102
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-39 Score=311.81 Aligned_cols=200 Identities=28% Similarity=0.410 Sum_probs=148.5
Q ss_pred eEEEecCCcccCCCceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+++|.||.+ .|+... -.+++++ .+.+||++||+|++|||||||.++|+|+.+|+.|+|..
T Consensus 3 ~l~v~nl~~--------~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~-------- 66 (252)
T COG1124 3 LLSVRNLSI--------VYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL-------- 66 (252)
T ss_pred eEEEeceEE--------EecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEE--------
Confidence 677887765 444332 1344455 35899999999999999999999999999999999852
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhh---hchhhhhc----C---chHHHHHHHHHHhhcCCc-hhhccc
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV---QGNVGQVL----D---QKDERDMKADLCTDLDLN-QVIDRN 213 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~v~~~l----~---~~~~~~~~~~~l~~l~L~-~~~dr~ 213 (605)
.|..+..--.. ....-..|.+.+.|..- ..+|++.+ . ..+..+++.++++.+||. .+++|+
T Consensus 67 ---~G~~~~~~~~~-----~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~ 138 (252)
T COG1124 67 ---DGKPLAPKKRA-----KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR 138 (252)
T ss_pred ---CCcccCccccc-----hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC
Confidence 22211110000 00001123333333210 01232222 1 123345589999999997 689999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|||||+|||||||||+.+|++||||||||+||+..+..+++++.++.++ +.|+||||||+..+.++||||+||+.+
T Consensus 139 P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G 218 (252)
T COG1124 139 PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNG 218 (252)
T ss_pred chhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCC
Confidence 9999999999999999999999999999999999999999999999999875 899999999999999999999999753
No 103
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8.5e-38 Score=309.73 Aligned_cols=191 Identities=28% Similarity=0.419 Sum_probs=160.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~~-~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 7 TKRFGNV-TALDDLNLDIADG-----EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEEECCe-eeeeceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 6677653 4689999999888 78999999999999999999999999999875 2221 12359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 7655567999887532111 111 123567789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..++++|+++..+.+.|||+||||++++..+||++++++++.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~ 208 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 999999999999999876568999999999999999999999998643
No 104
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-38 Score=314.21 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=166.5
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ..
T Consensus 8 ~~~~~~~~~~~~il~~~s~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (233)
T cd03258 8 SKVFGDTGGKVTALKDVSLSVPKG-----EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARR 82 (233)
T ss_pred eEEccCCCCceeeeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 6677653 14688999998888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
.++|+||+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 162 (233)
T cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVL 162 (233)
T ss_pred heEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 59999999765555799988753211 1111 1235678999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||||++||+.++..+.++|+++.++.|.|||+||||++++..+||++++|+++.. ...++++++..
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 230 (233)
T cd03258 163 LCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV--VEEGTVEEVFA 230 (233)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCHHHHhc
Confidence 999999999999999999999998665589999999999999999999999986543 24466666543
No 105
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.3e-38 Score=326.44 Aligned_cols=203 Identities=25% Similarity=0.348 Sum_probs=168.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||
T Consensus 11 ~~~~~~~-~~l~~vsl~i~~G-----e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 11 SKSYGDK-VVVNDLSFTIARG-----ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred EEEeCCe-EEEcceeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 6777653 4789999999888 78999999999999999999999999999875 22211 236999999
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++..... ..... ...+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9766556899998753111 11111 1345678999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.. .|.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 165 gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 225 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRK--IAEGRPHALIDE 225 (303)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhh
Confidence 9999999999999999865 589999999999999999999999986543 356788887653
No 106
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-37 Score=310.76 Aligned_cols=190 Identities=22% Similarity=0.321 Sum_probs=157.3
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C--------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P--------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~--------~ 412 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + .
T Consensus 8 ~~~~~~~~~~~~~l~~isl~i~~G-----~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (221)
T TIGR02211 8 GKRYQEGKLDTRVLKGVSLSIGKG-----EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRN 82 (221)
T ss_pred eEEccCCCcceEeEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHH
Confidence 6677531 24688999999888 78999999999999999999999999999875 2211 1 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+++++..... .... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++
T Consensus 83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 162 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL 162 (221)
T ss_pred hcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 359999998755556799998753211 1111 123567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||++||+.++..+.++|+++.++.+.|||+||||++++.. +|++++|+++
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G 217 (221)
T TIGR02211 163 VLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDG 217 (221)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCC
Confidence 999999999999999999999999876568999999999999875 7999999864
No 107
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-38 Score=323.90 Aligned_cols=206 Identities=21% Similarity=0.333 Sum_probs=168.3
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~y~~~~~~~~~~L~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (290)
T PRK13634 9 EHRYQYKTPFERRALYDVNVSIPSG-----SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPL 83 (290)
T ss_pred EEEECCCCcccccceeeEEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 6677531 24789999999888 78999999999999999999999999999885 22221
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|++. ..+..||.+++....... .. ....+.++++.++|. .+.++++.+|||||+|||+|||||+++
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 163 (290)
T PRK13634 84 RKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAME 163 (290)
T ss_pred HhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 135999999853 234579998875322111 11 123567899999997 778999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|++|||||||++||+.++..+.++|+++.++.|.|||+||||++++..+||||++|+++.. ...++++++++..
T Consensus 164 P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~~ 237 (290)
T PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV--FLQGTPREIFADP 237 (290)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcCH
Confidence 9999999999999999999999999998766689999999999999999999999986553 3557888876653
No 108
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.5e-37 Score=308.13 Aligned_cols=190 Identities=19% Similarity=0.261 Sum_probs=158.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 7 ~~~~~~~~~~l~~~sl~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 81 (214)
T cd03292 7 TKTYPNGTAALDGINISISAG-----EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81 (214)
T ss_pred EEEeCCCceeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE
Confidence 667764334689999999888 78999999999999999999999999999875 22111 12589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
|++|+.......|+.+++...... ... ....+.++++.+++++..++++.+|||||+|||+|||||+.+|++||||
T Consensus 82 ~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 161 (214)
T cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161 (214)
T ss_pred EEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999987655557999887532111 111 1235678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||++||+.++..+.++|+++.+ .+.|+|+||||++++..+||++++|+++
T Consensus 162 EPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 162 EPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999854 4899999999999999999999999854
No 109
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=320.20 Aligned_cols=201 Identities=26% Similarity=0.344 Sum_probs=165.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 11 ~~~~~~~~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 85 (274)
T PRK13647 11 HFRYKDGTKALKGLSLSIPEG-----SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVF 85 (274)
T ss_pred EEEeCCCCeeeeeEEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEe
Confidence 677763334789999999888 78999999999999999999999999999885 22221 13599999
Q ss_pred CcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 420 QKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 420 q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
|++. ..+..|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||||
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9853 34567999887532111 111 123567889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|++||+.++..++++|+++.+ .|.|||++|||++++..+|||+++|+++.. ...++++.+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~ 225 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVDLAAEWADQVIVLKEGRV--LAEGDKSLL 225 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHh
Confidence 999999999999999999865 489999999999999999999999986553 345777654
No 110
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=325.38 Aligned_cols=204 Identities=22% Similarity=0.287 Sum_probs=167.3
Q ss_pred eeecCCce----eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--ccc------------
Q 040300 349 RYKYPTMV----KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEI------------ 410 (605)
Q Consensus 349 ~~~y~~~~----~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~------------ 410 (605)
++.|++.. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. ...
T Consensus 9 ~~~y~~~~~~~~~~l~~vsl~i~~G-----e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 9 VKIFNKKLPTELKALDNVSVEINQG-----EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEECCCCCccccceeeeEEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccccc
Confidence 67776421 3688999999888 789999999999999999999999999998741 110
Q ss_pred -----------------C--cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCc
Q 040300 411 -----------------P--EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEV 465 (605)
Q Consensus 411 -----------------~--~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~ 465 (605)
. ...++|++|++. ..+..||.+++...... ... ....+.++++.+++. ++.++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 163 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSP 163 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 0 235899999853 33556999887532211 111 124577899999996 7899999
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 466 ~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
.+|||||||||+||+||+++|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||||++|+++.
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~ 242 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGK 242 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999864 59999999999999999999999998654
Q ss_pred ceeeecCChhhhhcc
Q 040300 546 SVDCVANAPQSLLTG 560 (605)
Q Consensus 546 ~~~~~~~~p~~~~~~ 560 (605)
. ...++|++++..
T Consensus 243 i--~~~g~~~~~~~~ 255 (305)
T PRK13651 243 I--IKDGDTYDILSD 255 (305)
T ss_pred E--EEECCHHHHhcC
Confidence 3 466888888765
No 111
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-37 Score=319.44 Aligned_cols=204 Identities=23% Similarity=0.253 Sum_probs=167.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 14 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 14 SFTRGNR-CIFDNISLTVPRG-----KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred EEEECCE-EEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEE
Confidence 6777653 4689999999888 78999999999999999999999999999875 22211 23589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc--CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|++|+.......|+.+++...... .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 167 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167 (269)
T ss_pred EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999997655557999887532211 1111 13456789999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 234 (269)
T PRK11831 168 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI--VAHGSAQALQAN 234 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEE--EEeCCHHHHhcC
Confidence 9999999999999999999998665589999999999999999999999986543 345777777653
No 112
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-39 Score=302.61 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=173.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
..+|... ++.+++||++.+| ||+|++|||||||||.+.|+.|+.+|++|.+. +.++. +..|+|+
T Consensus 11 ~K~y~kr-~Vv~~Vsl~v~~G-----EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 11 AKSYKKR-KVVNDVSLEVNSG-----EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred hHhhCCe-eeeeeeeEEEcCC-----cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccc
Confidence 4556653 4689999999998 79999999999999999999999999999986 22221 3469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCC------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSY------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
||+.+.+-.+||++++........ ......+++|+.|+|.++.+++..+||||||+|+.|||||+.+|+++|||
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence 999988778999998764322111 11223568999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
||+||+||-+...+.++|+.|. ++|..|+++.|+..+...+|||.+++..+.. .+.|+|+++.+..
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaYIi~~G~v--la~G~p~ei~~n~ 230 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAYIISDGKV--LAEGSPEEIVNNE 230 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEEEEecCeE--EecCCHHHHhcCh
Confidence 9999999999999999999984 5699999999999999999999999975432 5789999998864
No 113
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=315.73 Aligned_cols=189 Identities=20% Similarity=0.302 Sum_probs=158.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~~~~ 424 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+...
T Consensus 8 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~ 81 (255)
T PRK11248 8 YADYGG-KPALEDINLTLESG-----ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGL 81 (255)
T ss_pred EEEeCC-eeeEeeeeEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCcc
Confidence 667765 34689999998888 78999999999999999999999999999875 2222 12358999998765
Q ss_pred CCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
....|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 82 LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 5557999887532111 111 123567899999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.++..+.++|+++.++.|.|||+||||++++..+|||+++|++
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999998655589999999999999999999999983
No 114
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2e-37 Score=309.28 Aligned_cols=191 Identities=18% Similarity=0.244 Sum_probs=158.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 82 (222)
T PRK10908 8 SKAYLGGRQALQGVTFHMRPG-----EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIG 82 (222)
T ss_pred EEEecCCCeEEeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheE
Confidence 667732234688999998888 78999999999999999999999999999875 22111 13589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
|++|+....+..|+.+++..... ..... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (222)
T PRK10908 83 MIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD 162 (222)
T ss_pred EEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999765567899988753211 11111 124567899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|||++||+.++..+.++|+++.. .+.|+|+||||++++..+|||+++|+++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGH 214 (222)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999854 48999999999999999999999998654
No 115
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=320.06 Aligned_cols=204 Identities=25% Similarity=0.296 Sum_probs=168.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i 415 (605)
.+.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...+
T Consensus 31 ~~~~~~~-~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 31 LKKTGQT-VGVNDVSLDVREG-----EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhcCCc-eEeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5667653 4689999999888 78999999999999999999999999999875 22111 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+||+....+..|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987655567999987532111 111 123467889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||+|||+.++..+.++|+++..+.|.|||++|||++++..+||++++|+++.. ...++++++++.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 251 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRL--VQVGTPEEILTN 251 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999998665589999999999999999999999986543 345777777653
No 116
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=316.98 Aligned_cols=190 Identities=25% Similarity=0.318 Sum_probs=161.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--cceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--EFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--~~~i~y~~q~~~~ 424 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|+...
T Consensus 19 ~~~~~~~-~il~~isl~i~~G-----e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 19 SKRYGER-TVLNQLDLHIPAG-----QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARL 92 (257)
T ss_pred EEEECCc-ceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccC
Confidence 6777653 4689999999888 78999999999999999999999999999875 11111 2359999998765
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
....|+.+++...... .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 93 ~~~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~ 170 (257)
T PRK11247 93 LPWKKVIDNVGLGLKG--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170 (257)
T ss_pred CCCCcHHHHHHhcccc--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 4457999987542211 12345678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
.+.++|+++.++.+.|||+||||++++..+|||+++|+++..
T Consensus 171 ~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999998666689999999999999999999999986543
No 117
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=329.53 Aligned_cols=198 Identities=25% Similarity=0.362 Sum_probs=152.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||... .+++++ .++.||+++|+||||||||||||+|||+..|++|+|..
T Consensus 3 ~i~l~~v--------~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i----------- 62 (338)
T COG3839 3 ELELKNV--------RKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI----------- 62 (338)
T ss_pred EEEEeee--------EEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------
Confidence 5666664 55787653 666666 46899999999999999999999999999999999841
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|....+... .+-..++..|.....|.. +..++..- ..+.+.++++.++++.|+|+++++|++.+|||||
T Consensus 63 ~g~~vt~l~P----~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQ 138 (338)
T COG3839 63 DGRDVTDLPP----EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQ 138 (338)
T ss_pred CCEECCCCCh----hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhh
Confidence 1221111100 011112222222222321 11111111 1234567899999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
||||||||||+++|++++||||+|+||.+-|..+...|+++.++ +.|+|+||||..++..++|+|++|+
T Consensus 139 rQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~ 208 (338)
T COG3839 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN 208 (338)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe
Confidence 99999999999999999999999999999999999999999875 8999999999999999999999997
No 118
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-37 Score=307.23 Aligned_cols=189 Identities=27% Similarity=0.349 Sum_probs=157.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. . .+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ ....++|++|+
T Consensus 7 ~~~~~~~--~-~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 7 RFSYGEQ--P-MHFDLTFAQG-----EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred EEEeCCE--e-cceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 6667642 1 3788888887 78999999999999999999999999999875 2221 12359999999
Q ss_pred CCCCCcCcHHHHHHhhhccCC----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDSY----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++........ .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 765555799998753221111 1234567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..+.++|+++.++.+.|+|+||||++++..+|||+++++++.
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 206 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCE
Confidence 999999999999999876568999999999999999999999998654
No 119
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=320.80 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=167.8
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~y~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (286)
T PRK13646 9 SYTYQKGTPYEHQAIHDVNTEFEQG-----KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPV 83 (286)
T ss_pred EEEECCCCccccCceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 6677532 24789999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|+||++. ..+..|+.+++...... ... ....+.++++.+|+. +..++++.+|||||+|||+|||||+.+
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~ 163 (286)
T PRK13646 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN 163 (286)
T ss_pred HhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 235899999853 33456998887542211 111 124567899999997 788999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||++||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...+++.+++..
T Consensus 164 p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~ 236 (286)
T PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI--VSQTSPKELFKD 236 (286)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999998665689999999999999999999999986553 356888887764
No 120
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=329.07 Aligned_cols=200 Identities=25% Similarity=0.302 Sum_probs=167.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---------C--ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---------P--EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---------~--~~~i 415 (605)
+++|++. .. +++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + ...+
T Consensus 7 ~k~~~~~--~~-~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i 78 (352)
T PRK11144 7 KQQLGDL--CL-TVNLTLPAQ-----GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78 (352)
T ss_pred EEEeCCE--EE-EEEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCE
Confidence 5667652 22 788888877 78999999999999999999999999999875 2111 1 2369
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
+|++|+......+|+.+++...... .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 ~~v~q~~~l~~~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 79 GYVFQDARLFPHYKVRGNLRYGMAK--SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred EEEcCCcccCCCCcHHHHHHhhhhh--hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 9999997665668999987543221 22346788999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+.++..+.+.|+++.++.+.|+|+||||++++..+|||+++|+++.. ...++|++++..
T Consensus 157 s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~i~~~ 219 (352)
T PRK11144 157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKV--KAFGPLEEVWAS 219 (352)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE--EEecCHHHHHhC
Confidence 999999999999999998766689999999999999999999999986543 355788887664
No 121
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.2e-37 Score=310.67 Aligned_cols=203 Identities=19% Similarity=0.274 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|
T Consensus 8 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 8 SFAYGA-RRALDDVSFTVRPG-----EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 667765 34689999998888 78999999999999999999999999999875 22211 135899999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+....+..|+.+++...... ... ....+.++++.+++.+.+++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 97665678999887432111 111 12356788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+.++..+.++|+++.++.|.|+|++|||++++.. |||+++|+++.. ...++++++...
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i--~~~~~~~~~~~~ 222 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRV--LADGAAAELRGA 222 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeE--EEeCCHHHHHHH
Confidence 9999999999999999865568999999999999975 999999986543 345677776553
No 122
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.6e-37 Score=308.04 Aligned_cols=201 Identities=26% Similarity=0.299 Sum_probs=162.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 7 NAGYGKS-QILFGVSLTVPEG-----EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred EeecCCe-eEeeeeeEEEcCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 6677653 4688999999888 68999999999999999999999999999875 22111 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC--CCCHHHHHHHHhhc-CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS--YTHPQFVSDVMKPL-LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~l~~l-~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
||+.......|+++++....... ......+.++++.+ ++.+..++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99976555679998875321111 11123456778888 5788889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
++||+.++..++++|+++.. .+.|+|++|||++++..+||++++|+.+.. ...++++++.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~ 220 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRV--VLEGTAAELL 220 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeE--EEeCCHHHHh
Confidence 99999999999999999865 589999999999999999999999986543 2345555543
No 123
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.4e-37 Score=309.43 Aligned_cols=202 Identities=26% Similarity=0.373 Sum_probs=164.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C-----cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P-----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~-----~~~i~y~ 418 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... + ...++|+
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 7 SKRYGKR-KVVNGVSLSVKQG-----EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred EEEeCCE-EeeccceeEecCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 6777653 4688999999888 68999999999999999999999999999875 2211 1 1358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
+|+.......|+++++...... ... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9987655556999877532111 111 123456889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+|||+.++..+.++|+++.+ .+.|+|++|||++++..+|||+++|+++.. ...++++++..
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 222 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKV--LAEGTPEEIAA 222 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EEEeCHHHhhc
Confidence 999999999999999999864 589999999999999999999999986543 24466666544
No 124
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=314.42 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=167.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 9 ~~~~~~-~~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 9 SVRLGG-RTLLDDVSLTLRPG-----EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEEeCC-eeeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 677765 34789999999888 68999999999999999999999999999875 22111 13589999
Q ss_pred CcCCCCCcCcHHHHHHhhhccC-C---CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc------cCCCEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDS-Y---THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG------KPADIY 489 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~------~~p~ll 489 (605)
|+....+..|+.+++....... . .....+.++++.+++.+..++.+.+|||||+|||+|||||+ .+|++|
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 9876656789999875421111 1 11245678899999999999999999999999999999999 599999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||||++||+.++..+.++|+++.++.+.|||++|||++++..+|||+++|+.+.. ...++++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 230 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL--VADGTPAEVLT 230 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE--EeeCCHHHHhC
Confidence 999999999999999999999998645689999999999999999999999986543 34577777655
No 125
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-37 Score=306.07 Aligned_cols=190 Identities=24% Similarity=0.361 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---CcceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---PEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~~~~i~y~~q~~~ 423 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+..
T Consensus 7 ~~~~~~-~~~l~~v~~~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 7 TKRFGR-VTALDDISFSVEKG-----EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 566764 34688999998888 78999999999999999999999999999985 2221 1236999999976
Q ss_pred CCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.....|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+||+||+.+|++|||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 5556799988743211 1111 12456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+.++..+.++|+++.. .+.|||++|||.+++..+|||+++|+++.
T Consensus 161 ~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 161 PVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 9999999999999864 48999999999999999999999998654
No 126
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.9e-37 Score=306.99 Aligned_cols=191 Identities=25% Similarity=0.325 Sum_probs=159.2
Q ss_pred eeecCCce---eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEe
Q 040300 349 RYKYPTMV---KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~---~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y 417 (605)
++.|++.. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 8 ~~~~~~~~~~~~il~~~sl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 82 (218)
T cd03266 8 TKRFRDVKKTVQAVDGVSFTVKPG-----EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGF 82 (218)
T ss_pred EEecCCCCccceeecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEE
Confidence 66776531 4688999999888 78999999999999999999999999999875 22211 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 83 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 162 (218)
T cd03266 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE 162 (218)
T ss_pred ecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99997555557999987432111 111 12456789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||++||+.++..+.++|+++.+ .+.|+|+||||++++..+|||+++|+++.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 163 PTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGR 213 (218)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999854 58999999999999999999999998643
No 127
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-37 Score=311.24 Aligned_cols=204 Identities=26% Similarity=0.363 Sum_probs=165.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+|
T Consensus 7 ~~~~~~~~~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (242)
T cd03295 7 TKRYGGGKKAVNNLNLEIAKG-----EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81 (242)
T ss_pred EEEeCCcceEeeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEc
Confidence 667765123688999998888 78999999999999999999999999999875 22211 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCch--hhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 420 QKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQ--LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~--~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
|+.......|+.+++..... .... ....+.++++.+++.. ..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 161 (242)
T cd03295 82 QQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 98766556799998753211 1111 1235678899999985 8899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||++||+.++..+.++|+++..+.|.|||+||||++++..+|||+++|+++... ..++++++..
T Consensus 162 Pt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~--~~~~~~~~~~ 225 (242)
T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV--QVGTPDEILR 225 (242)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE--EecCHHHHHc
Confidence 999999999999999999986655899999999999999999999999865542 3466666643
No 128
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.9e-37 Score=325.32 Aligned_cols=197 Identities=20% Similarity=0.308 Sum_probs=163.0
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC-
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS- 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~- 423 (605)
..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 35 ~~l~~vsl~i~~G-----e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 35 KAVDGVTLRLYEG-----ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred EEEeeEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 4688999999888 78999999999999999999999999999875 22221 135999999963
Q ss_pred -CCCcCcHHHHHHhhhcc---CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 424 -PKFQSTVRHLLHQKIRD---SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 424 -~~~~~tv~~~~~~~~~~---~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
....+|+.+++...... ... ....+.++++.+++. ..+++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 33457999887532211 111 123567889999994 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+.++..++++|+++.++.+.|+|+||||+.++.++||||++|..+.. ...+++++++..
T Consensus 190 s~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i--ve~g~~~~i~~~ 252 (331)
T PRK15079 190 SALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA--VELGTYDEVYHN 252 (331)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHcC
Confidence 999999999999999999766689999999999999999999999986543 345778877654
No 129
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.7e-37 Score=309.40 Aligned_cols=191 Identities=24% Similarity=0.273 Sum_probs=158.1
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~ 412 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... .
T Consensus 13 ~~~~~~~~~~~~~l~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (228)
T PRK10584 13 KKSVGQGEHELSILTGVELVVKRG-----ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRA 87 (228)
T ss_pred EEEccCCCcceEEEeccEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHh
Confidence 6777642 23688999998888 78999999999999999999999999999875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++
T Consensus 88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l 167 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV 167 (228)
T ss_pred heEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 359999999765555799988643211 1111 134567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|||||||+|||+.++..+.++|+++.++.|.|||++|||++++.. ||++++|+++.
T Consensus 168 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~ 223 (228)
T PRK10584 168 LFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQ 223 (228)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCE
Confidence 999999999999999999999999866568999999999999865 99999998654
No 130
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=2.6e-38 Score=328.97 Aligned_cols=201 Identities=41% Similarity=0.713 Sum_probs=173.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
+++.|| +|+|.--+ .+..||++|++||||.||||++|+|+|.++|+.|...
T Consensus 348 ~~k~~g--~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~-------------------------- 399 (591)
T COG1245 348 LKKTYG--DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-------------------------- 399 (591)
T ss_pred heeecC--ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCc--------------------------
Confidence 566676 58876555 5789999999999999999999999999999998611
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcCchH-----HHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKD-----ERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
+++..+||||+... +.++|.+++.... ......++++-|+|+.++++++.+|||||+||||||.||.+++|
T Consensus 400 -~~~vSyKPQyI~~~---~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 400 -DLKVSYKPQYISPD---YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred -cceEeecceeecCC---CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccC
Confidence 23456788887643 3556666554321 12345678899999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcC
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAG 315 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g 315 (605)
+|+||||++|||+.+|..++++|+++..+ ++|.++|+||+.++++++|++++..|.|+.+|....|.+.++|.|.||..
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~ 555 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKN 555 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999864 89999999999999999999999999999999999999999999999873
No 131
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=310.19 Aligned_cols=192 Identities=20% Similarity=0.267 Sum_probs=158.1
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~ 412 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. .
T Consensus 12 ~~~~~~~~~~~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (233)
T PRK11629 12 CKRYQEGSVQTDVLHNVSFSIGEG-----EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRN 86 (233)
T ss_pred EEEcCCCCcceeeEEeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHh
Confidence 6777642 24688999998888 78999999999999999999999999999875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+++++..... .... ....+.++++.+++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 166 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 359999999755455699998753211 1111 124567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|||||||++||+.++..+.++|+++..+.|.|||+||||++++..+ |++++|+++..
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i 223 (233)
T PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRL 223 (233)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEE
Confidence 9999999999999999999999998655689999999999999875 69999986543
No 132
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=319.84 Aligned_cols=204 Identities=22% Similarity=0.349 Sum_probs=166.9
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 8 ~~~y~~~~~~~~~~l~~vsl~i~~G-----e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 82 (288)
T PRK13643 8 NYTYQPNSPFASRALFDIDLEVKKG-----SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV 82 (288)
T ss_pred EEEeCCCCcccccceeeeEEEEcCC-----CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHH
Confidence 6677532 13688999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|++. ..+..|+.+++...... ... ....+.++++.+++. .+.++++.+|||||||||+||+||+.+
T Consensus 83 ~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~ 162 (288)
T PRK13643 83 RKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAME 162 (288)
T ss_pred HhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhC
Confidence 135899999863 34557999887542211 111 123467889999996 688999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+||||++|+++.. ...++|++++..
T Consensus 163 p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~ 234 (288)
T PRK13643 163 PEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHI--ISCGTPSDVFQE 234 (288)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHHcC
Confidence 999999999999999999999999999865 489999999999999999999999997654 456889988764
No 133
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-38 Score=313.63 Aligned_cols=189 Identities=24% Similarity=0.350 Sum_probs=148.9
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-HHHHHHhhcc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL-EDNLKAIIKP 170 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~~~~ 170 (605)
.+.+++ .+++||++||+|.||||||||+|++.++.+|++|++. +.|.++..+...-+ ...-+..+..
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~-----------v~G~di~~l~~~~Lr~~R~~IGMIF 89 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF-----------VDGQDLTALSEAELRQLRQKIGMIF 89 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-----------EcCEecccCChHHHHHHHhhccEEe
Confidence 456666 4689999999999999999999999999999999985 23322222211111 1111223334
Q ss_pred cccccch-hhhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 040300 171 QYVDHIP-KAVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244 (605)
Q Consensus 171 q~~~~~~-~~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt 244 (605)
|.+..+. +.+.+++.-- ..+.+..+++.++++.+||++..++++.+|||||||||+|||||+.+|+|||.||||
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT 169 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT 169 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc
Confidence 4444333 2333333211 234566789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 245 SYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 245 s~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+|||.+...+.++|+++.++ |.||++|||.++++..+||||.+|+.+
T Consensus 170 SALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G 218 (339)
T COG1135 170 SALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG 218 (339)
T ss_pred ccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCC
Confidence 999999999999999999875 999999999999999999999999743
No 134
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=311.25 Aligned_cols=203 Identities=21% Similarity=0.279 Sum_probs=165.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 10 ~~~~~~~-~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 10 SYSSFGK-EILKDISVKFEGG-----AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred EEEeCCe-eeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 6677653 4688999999888 78999999999999999999999999999875 22211 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
|+... +..|+.+++.............+.++++.+++. ++.++++.+|||||+|||+|||||+.+|++|||||||++|
T Consensus 84 q~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 84 QQPHL-FEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred cCchh-chhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 98654 456898876532111111234567889999996 6889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..+.+.|+++.++.|.|||++|||++++..+|||+++|+++.. ...+++.+++..
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 222 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL--VEYAKTYDFFTN 222 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEE--EEeCCHHHHhcC
Confidence 999999999999998665589999999999999999999999986543 345777777653
No 135
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.2e-37 Score=306.32 Aligned_cols=199 Identities=26% Similarity=0.334 Sum_probs=162.1
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~ 419 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 7 ~~~~~~~~~~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 7 TKTYKKGTKPAVDDLSLNVYKG-----EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEEeCCCCceeecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 6677642 34689999999888 68999999999999999999999999999875 22211 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 420 QKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 98765556799988743211 1111 1235678899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
++||+.++..+.++|+++.+ +.|+|++|||++++..+||++++++++.. ...+++++
T Consensus 162 ~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~ 218 (220)
T cd03263 162 SGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKL--RCIGSPQE 218 (220)
T ss_pred CCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEE--EecCCHHH
Confidence 99999999999999999853 58999999999999999999999986543 23455554
No 136
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=317.85 Aligned_cols=204 Identities=24% Similarity=0.367 Sum_probs=167.3
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 11 ~~~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 11 TFKYKEDQEKYTLNDVSFHVKQG-----EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred EEEcCCCCcCeeeeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceE
Confidence 6777632 23688999999888 78999999999999999999999999999875 22221 135899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|++. ..+..||.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 165 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999863 34567999987532211 111 1245678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+|||+.++..++++|+++..+.|.|||+||||++++. +|||+++++++.. ...++++++...
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i--~~~g~~~~~~~~ 230 (279)
T PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV--ESTSTPRELFSR 230 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEECCHHHHHcC
Confidence 9999999999999999999987656899999999999995 7999999986553 356888887665
No 137
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-37 Score=305.84 Aligned_cols=198 Identities=27% Similarity=0.375 Sum_probs=146.4
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
++++.|+.. ...|.+++ .+++||+++|+|||||||||||++|+|+.+|+.|.+. +.|.++.....
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~-----------i~g~d~~~l~~ 74 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL-----------INGKDLTKLSE 74 (226)
T ss_pred eeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE-----------ECCEEcCcCCH
Confidence 455566533 13455666 4689999999999999999999999999999999964 22222211110
Q ss_pred HH--HHHHHHHhhcccccccchhh-hhchhhh--hcC---chHHHHHHHHHHhhcCCchhhc-ccCCCCChHHHHHHHHH
Q 040300 158 RI--LEDNLKAIIKPQYVDHIPKA-VQGNVGQ--VLD---QKDERDMKADLCTDLDLNQVID-RNVGDLSGGELQRFAIA 228 (605)
Q Consensus 158 ~~--~~~~~~~~~~~q~~~~~~~~-~~~~v~~--~l~---~~~~~~~~~~~l~~l~L~~~~d-r~v~~LSGGe~QRvaIA 228 (605)
.. ....-...+..|....+|.. +..++.- .+. .....+++.++++.+||++.++ ++|.+||||||||||||
T Consensus 75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 00 01112223444555555543 1222210 111 1134667889999999997666 99999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||+.+|+++|.||||.+||.++...++++++++.++ |+||||||||...+. .|||++.|.+
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~d 217 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKD 217 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeC
Confidence 9999999999999999999999999999999999875 899999999998887 7999999864
No 138
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.6e-37 Score=320.50 Aligned_cols=202 Identities=24% Similarity=0.333 Sum_probs=168.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ...++|+||
T Consensus 9 ~~~~~~-~~~l~~is~~i~~G-----ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 9 TKLYGT-QNALDEVSFEAQKG-----RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEECC-EEEEEEeEEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 677765 34789999999888 78999999999999999999999999999875 22221 135999999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC-C--HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT-H--PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~-~--~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++...... ... . ...+.++++.+++.+..++.+.+|||||||||+||+||+.+|++|||||||+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 97766667999987532111 111 1 2456789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++. + ++|||++||+++++..+||||++|+++.. ...++++++...
T Consensus 163 gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 222 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKI--VADKKLDELSAA 222 (301)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHHh
Confidence 999999999999999984 3 79999999999999999999999986544 356888887553
No 139
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.8e-37 Score=310.07 Aligned_cols=202 Identities=21% Similarity=0.284 Sum_probs=165.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 8 ~~~~~~-~~il~~~s~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 8 SKHFGP-TQVLHNIDLNIDQG-----EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEECC-eEEeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 667765 34689999999888 78999999999999999999999999999875 22211 225899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+....+..|+.+++..... .... ....+.++++.+++++..++++.+|||||+|||+|||||+.+|++||||
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9998765556799988743211 1111 1235678999999999899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||++||+.++..+.++|+++.+ .++|+|+||||++++..+|||+++|+++.. ...+++.++.+
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 225 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRI--AEDGDPQVLIK 225 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EeeCCHHHHhc
Confidence 99999999999999999999864 489999999999999999999999986543 24466666644
No 140
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.8e-37 Score=304.93 Aligned_cols=189 Identities=25% Similarity=0.322 Sum_probs=158.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 7 ~~~~~~-~~~l~~~s~~i~~G-----~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 7 HKSFGD-FHVLKGIDLTVKKG-----EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEECC-eEeecCceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 677765 34688999998888 78999999999999999999999999999875 22221 235899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999765556799988743211 1111 1235678899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|+++
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g 211 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDG 211 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999865 5899999999999999999999999853
No 141
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.8e-37 Score=308.16 Aligned_cols=197 Identities=22% Similarity=0.319 Sum_probs=160.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC-----CCCeeeee--cccc---C------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL-----KPDSVEDS--DVEI---P------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~-----~p~~G~i~--~~~~---~------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|++ +|++|++. +..+ . .
T Consensus 7 ~~~~~~~-~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 7 NVYYGDK-HALKDISLDIPKG-----EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred EEEcCCc-eeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 6777653 4689999999888 789999999999999999999999 99999875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCchhhccC--cCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIEQLMDQE--VVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~~~~~~~--~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+.... ..|+.+++...... .. . ....+.++++.+++.+..++. +.+|||||+|||+|||||+.+
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 3589999987554 78999987532111 11 1 124567889999999877777 599999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
|++|||||||++||+.++..+.++|+++.+ . .|||++|||++++..+|||+++|+++.. ...+++++
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~ 226 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRL--VEFGPTEQ 226 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEE--EEecCccc
Confidence 999999999999999999999999999854 3 8999999999999999999999986543 23455544
No 142
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-37 Score=316.09 Aligned_cols=205 Identities=23% Similarity=0.282 Sum_probs=169.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 84 (277)
T PRK13652 10 CYSYSGSKEALNNINFIAPRN-----SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVF 84 (277)
T ss_pred EEEeCCCCceeeEeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEe
Confidence 677854334789999999888 78999999999999999999999999999875 22221 12589999
Q ss_pred CcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 420 QKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 420 q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
|+.. ..+..|+.+++...... .... ...+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++||||||
T Consensus 85 q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred cCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9863 24567999887532111 1111 23467899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+|||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+.+.. ...++++++++.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~ 228 (277)
T PRK13652 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI--VAYGTVEEIFLQ 228 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE--EEECCHHHHhcC
Confidence 9999999999999999998765689999999999999999999999986543 356888888764
No 143
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.1e-37 Score=312.34 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=165.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 10 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 10 VKKFHGQ-TVLHGIDLEVKPG-----EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred EEEECCe-eeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHh
Confidence 6777653 4689999999888 78999999999999999999999999999874 21111
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
...++|+||+.......|+.+++..... .... ....+.++++.+++....++++.+|||||+|||+|||||+.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 2358999998765556799988743211 1111 1235677899999998889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...+++++++.
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 233 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRI--VEQGPAKALFA 233 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhc
Confidence 99999999999999999999999999864 489999999999999999999999986543 34567776654
No 144
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-37 Score=329.61 Aligned_cols=198 Identities=23% Similarity=0.311 Sum_probs=166.2
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------cceeEeecCcC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNVSYKPQKI 422 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i~y~~q~~ 422 (605)
...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+.
T Consensus 41 ~~~L~~isl~i~~G-----ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 41 SLGVKDASLAIEEG-----EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred eEEEEeEEEEEcCC-----CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 34689999999888 78999999999999999999999999999875 22211 13599999997
Q ss_pred CCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 423 SPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
......|+.+++...... .+. ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~L 195 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 765668999987542211 111 1245678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..+.+.|+++.++.++|||+||||++++..+|||+++|+++.. ...++|+++...
T Consensus 196 D~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i--~~~g~~~~l~~~ 255 (400)
T PRK10070 196 DPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV--VQVGTPDEILNN 255 (400)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE--EecCCHHHHHhC
Confidence 999999999999998665689999999999999999999999986543 355788887654
No 145
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-37 Score=317.10 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=169.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 12 ~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 12 NYNYSDGTHALKGININIKKG-----EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred EEEeCCCCeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEE
Confidence 778863234789999999888 78999999999999999999999999999875 22221 135899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+||+.. ..+..|+.+++...... .... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 87 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD 166 (283)
T PRK13636 87 VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166 (283)
T ss_pred EecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999863 23567999987532111 1111 245678899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+|||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+.+.. ...++++++.+..
T Consensus 167 EPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~~ 233 (283)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV--ILQGNPKEVFAEK 233 (283)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcCH
Confidence 999999999999999999998765689999999999999999999999986543 3568888877653
No 146
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.9e-37 Score=307.22 Aligned_cols=192 Identities=23% Similarity=0.333 Sum_probs=156.5
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C-------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P-------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~-------~~ 413 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + ..
T Consensus 8 ~~~~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (228)
T cd03257 8 SVSFPTGGGSVKALDDVSFSIKKG-----ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82 (228)
T ss_pred eEeccCCCcceeeecCceeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhc
Confidence 6677643 14688999999888 78999999999999999999999999999875 2211 1 13
Q ss_pred eeEeecCcCC--CCCcCcHHHHHHhhhcc---CCCCH--HH-HHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 414 NVSYKPQKIS--PKFQSTVRHLLHQKIRD---SYTHP--QF-VSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 414 ~i~y~~q~~~--~~~~~tv~~~~~~~~~~---~~~~~--~~-~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|++|+.. .....|+++++...... ..... .. +.++++.+++. ...++++.+|||||+|||+|||||+.
T Consensus 83 ~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (228)
T cd03257 83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL 162 (228)
T ss_pred cEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc
Confidence 5999999863 33457999887432111 11111 11 24788999995 68899999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|++|||||||++||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+++.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 163 NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 9999999999999999999999999999876558999999999999999999999998654
No 147
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=311.85 Aligned_cols=204 Identities=21% Similarity=0.311 Sum_probs=166.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 12 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 12 MMRFGG-LLAVNNVNLEVREQ-----EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EEEECC-EEEEEeeeeEEcCC-----eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 677765 34689999999888 68999999999999999999999999999875 22211 2348899
Q ss_pred cCcCCCCCcCcHHHHHHhhhc---------cC-----C-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHH
Q 040300 419 PQKISPKFQSTVRHLLHQKIR---------DS-----Y-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~---------~~-----~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA 479 (605)
+|+.......|+.+++..... .. . .....+.++++.+++.+..++++.+|||||+|||+||
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 999766666799987753210 00 0 0113466788999999999999999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 480 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+||+.+|++|||||||+|||+.++..+.++|.++.++.+.|||++|||++++..+||++++++++.. ...++++++++
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~~ 243 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP--LANGTPEEIRN 243 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EecCCHHHHhh
Confidence 9999999999999999999999999999999998655589999999999999999999999986543 34567777654
Q ss_pred c
Q 040300 560 G 560 (605)
Q Consensus 560 ~ 560 (605)
.
T Consensus 244 ~ 244 (255)
T PRK11300 244 N 244 (255)
T ss_pred C
Confidence 3
No 148
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.7e-37 Score=326.51 Aligned_cols=202 Identities=25% Similarity=0.315 Sum_probs=166.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------Cccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i 415 (605)
+++|++. .+ +++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ ....+
T Consensus 6 ~~~~~~~--~~-~isl~i~~G-----ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 6 SKRLGDF--SL-DADFTLPGQ-----GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEECCE--EE-EEEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCe
Confidence 5667653 34 788888777 78999999999999999999999999999875 2111 12359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++|+.......||.+++........ .....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999999766556799998754322111 112346789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+.++..+++.|+++.++.|.|+|+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 222 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV--AAAGPIAEVWAS 222 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE--EEECCHHHHhcC
Confidence 99999999999999999998765689999999999999999999999986543 345777777654
No 149
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.3e-37 Score=307.69 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=163.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 7 NVYYGQS-HILRGVSLEVPKG-----EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred EEEeCCe-EEecceeeEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 6777653 4688999998888 78999999999999999999999999999875 21111 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC-CCCHHHHHHHHhhcC-CchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS-YTHPQFVSDVMKPLL-IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~l~~l~-l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
||+.......|+.+++....... ........++++.++ +....++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~ 160 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99976555569998875322111 112234567788887 6778899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+||+.++..+.++|+++.++.+.|+|++|||++++..+|||+++++++.. ...++++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i--~~~~~~~~~ 219 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV--VASGAGDEL 219 (230)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHc
Confidence 99999999999999998654589999999999999999999999986543 345666665
No 150
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-37 Score=317.30 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=166.1
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13641 9 DYIYSPGTPMEKKGLDNISFELEEG-----SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKL 83 (287)
T ss_pred EEEcCCCCCccccceeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 6677531 23689999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|++. ..+..|+.+++..... .... ....+.++++.++++ .+.++++.+|||||||||+|||||+.+
T Consensus 84 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~ 163 (287)
T PRK13641 84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYE 163 (287)
T ss_pred HhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 135899999852 3345799988753211 1111 123567889999997 788999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||+|||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+.+.. ...+++++++..
T Consensus 164 p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 235 (287)
T PRK13641 164 PEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKL--IKHASPKEIFSD 235 (287)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999999999999854 589999999999999999999999986543 355788877654
No 151
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-37 Score=312.51 Aligned_cols=198 Identities=25% Similarity=0.310 Sum_probs=172.2
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------CcceeEeecCcCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNVSYKPQKIS 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i~y~~q~~~ 423 (605)
..+.+.+|++..| ||..|.|-+|||||||+|+|.++++|++|++. +.++ ...++++++|+..
T Consensus 42 vGv~~~sl~v~~G-----eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 42 VGVNDASLDVEEG-----EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred EeeccceeeecCC-----eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 3467889999888 79999999999999999999999999999986 2211 2346999999998
Q ss_pred CCCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
..+..||.+|......-. ....+.+.++++.+||+.+.+++|.+||||+||||.|||||+.+|+|||+|||+|+||
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 888899999875432211 1223567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|--|.++.+.|.+|.++.++||++||||+++|.++.|||.+|+++.. ...|+|+++....
T Consensus 197 PLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i--vQ~Gtp~eIl~~P 256 (386)
T COG4175 197 PLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI--VQVGTPEEILLNP 256 (386)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE--EEeCCHHHHHcCc
Confidence 99999999999999888899999999999999999999999998665 4569999998764
No 152
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-38 Score=313.37 Aligned_cols=192 Identities=30% Similarity=0.359 Sum_probs=150.9
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC--CCCh----hhhhhhhccchhh
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN--PPDW----QEILTYFRGSELQ 153 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~--~~~~----~~~~~~~~g~~l~ 153 (605)
++++++|++....+++++ .+.+|+.++|+|+||||||||+++|+|+++|..|.+.. .+.. ...+....|..+|
T Consensus 7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQ 86 (235)
T COG1122 7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86 (235)
T ss_pred EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEE
Confidence 356778866544566666 45799999999999999999999999999999999731 1111 0011112233333
Q ss_pred hhHHHHHHHHHHHhhcccccccchhhhhchhhh---------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 154 NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 154 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
+...++ +..+|.+ -+...+.++++.++++.+|+.++++|++.+|||||+||
T Consensus 87 npd~q~--------------------~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqR 146 (235)
T COG1122 87 NPDDQL--------------------FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQR 146 (235)
T ss_pred Cccccc--------------------ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceee
Confidence 322111 1112211 12334567899999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||.+|+++|++||||||||+||+..+.++++++++|.++ |+|||++|||++.+..+||++++|+.+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G 215 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999999999987 799999999999999999999999753
No 153
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.9e-37 Score=308.27 Aligned_cols=182 Identities=25% Similarity=0.335 Sum_probs=152.6
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--cceeEeecCcCCCCCcCcHHHHHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--EFNVSYKPQKISPKFQSTVRHLLH 435 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--~~~i~y~~q~~~~~~~~tv~~~~~ 435 (605)
++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ....+|++|+.......|+.+++.
T Consensus 2 ~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 2 KGVNLTIQQG-----EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHH
Confidence 5778888887 78999999999999999999999999999875 22221 123589999876555579999875
Q ss_pred hhhc---cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 436 QKIR---DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 436 ~~~~---~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
.... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 4211 11111 23467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|+++.++.|.|||+||||++++..+|||+++|+++..
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPA 193 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcE
Confidence 9998765689999999999999999999999986554
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.6e-37 Score=311.38 Aligned_cols=204 Identities=21% Similarity=0.278 Sum_probs=167.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+.
T Consensus 7 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 7 TKRFGI-LTVLDGLNFSVAAG-----EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEeCC-eeEEeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 677765 34688999998888 78999999999999999999999999999875 22110
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
...++|++|+....+..|+.+++..... .... ....+.++++.+++.+..++.+.+|||||+|||+||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 2359999998766556899988753211 1111 12356788999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.+|++|||||||++||+.++..+.++|+++.++.|.|+|+||||++++..+|||+++|+++.. ...++++++...
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 237 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI--VEQGKPDEIFRQ 237 (252)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999999999999998765589999999999999999999999986543 345667766543
No 155
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.9e-37 Score=314.74 Aligned_cols=202 Identities=22% Similarity=0.309 Sum_probs=164.3
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC-
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS- 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~- 423 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 25 ~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 25 PVLTNVSLSIEEG-----ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred EEeeCceeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 4688999998888 78999999999999999999999999999875 22211 135999999853
Q ss_pred -CCCcCcHHHHHHhhhc--cCC---CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 424 -PKFQSTVRHLLHQKIR--DSY---THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 424 -~~~~~tv~~~~~~~~~--~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.....|+.+++..... ... .....+.++++.+++. ...++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3335789887642211 111 1124567899999996 78899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFL 565 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l 565 (605)
+||+.++..++++|+++.++.|.|||+||||++++..+|||+++++++.. ...++++++....+.+.
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~~~~~~ 246 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI--VEECDVAQLLSFKHPAG 246 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE--EEECCHHHHcCCCCHHH
Confidence 99999999999999998765689999999999999999999999986543 35688888876444333
No 156
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-36 Score=307.71 Aligned_cols=201 Identities=23% Similarity=0.309 Sum_probs=165.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 9 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 82 (242)
T TIGR03411 9 SVSFDG-FKALNDLSLYVDPG-----ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRK 82 (242)
T ss_pred EEEcCC-eEEeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEe
Confidence 677765 34789999998888 78999999999999999999999999999875 22211 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC------C------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS------Y------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~------~------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+|+.......|+.+++....... . .....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|
T Consensus 83 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p 162 (242)
T TIGR03411 83 FQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDP 162 (242)
T ss_pred ccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99876555679999775321100 0 01245678899999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|||||||++||+.++..++++|+++.. +.|||+||||++++..+|||+++++++.. ...++++++.+
T Consensus 163 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~--~~~~~~~~~~~ 231 (242)
T TIGR03411 163 KLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSV--LAEGSLDQVQA 231 (242)
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeE--EeeCCHHHHhc
Confidence 99999999999999999999999999853 68999999999999999999999986543 34567777654
No 157
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.1e-36 Score=302.20 Aligned_cols=189 Identities=29% Similarity=0.428 Sum_probs=158.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|+. .+.+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+
T Consensus 7 ~~~~~~---~~~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 7 RYEYEH---LPMEFDLNVADG-----EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred eEEeCC---cceeeEEEEeCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 666753 346888888887 78999999999999999999999999999875 22211 2359999999
Q ss_pred CCCCCcCcHHHHHHhhhccCC----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDSY----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++........ .....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||||++
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 765556799998753221111 1234567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..+.++|+++.++.+.|+|+||||++++..+||++++|+++.
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~ 206 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCe
Confidence 999999999999999876558999999999999999999999998654
No 158
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-37 Score=314.18 Aligned_cols=204 Identities=25% Similarity=0.348 Sum_probs=167.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 82 (275)
T PRK13639 8 KYSYPDGTEALKGINFKAEKG-----EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI 82 (275)
T ss_pred EEEeCCCCeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEE
Confidence 677763334689999999888 78999999999999999999999999999885 22221 135899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+.. ..+..|+.+++...... ... ....+.++++.+++.++.++++.+|||||+||++|||||+.+|++||||
T Consensus 83 v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 162 (275)
T PRK13639 83 VFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162 (275)
T ss_pred EeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999863 33567999887532111 111 1235678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||++||+.++..++++|+++.+ .+.|||+||||++++..+|||+++|+.+.. ...+++++++..
T Consensus 163 EPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 227 (275)
T PRK13639 163 EPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKI--IKEGTPKEVFSD 227 (275)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999865 489999999999999999999999986543 345788887664
No 159
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-37 Score=307.14 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=165.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|+||+
T Consensus 8 ~~~~~~~---~~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 8 TWLYHHL---PMRFDLTVERG-----ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEECCc---cceeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 6677642 23788888877 78999999999999999999999999999875 2221 12469999998
Q ss_pred CCCCCcCcHHHHHHhhhccC--CC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS--YT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~--~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++....... .. ....+.++++.+++++..++++.+|||||+|||+|||||+.+|++|||||||++
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 76554579999875321111 11 124577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
||+.++..+.++|+++..+.|.|+|+||||++++..+|||+++++++.. ...++++++.+.+
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i--~~~g~~~~~~~~~ 221 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRI--AWDGPTDELLSGK 221 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhCh
Confidence 9999999999999998665689999999999999999999999986543 3557777776654
No 160
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-37 Score=312.83 Aligned_cols=204 Identities=24% Similarity=0.378 Sum_probs=167.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~~ 419 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + ...++|++
T Consensus 18 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 18 SFRVPGR-TLLHPLSLTFPAG-----KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred EEEECCE-EEEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence 6778653 4689999998888 78999999999999999999999999999875 2211 1 12589999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc--C----CC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRD--S----YT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+..|+.+++...... . .. ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 171 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 986555667999887532110 0 11 123567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+.++..+.++|+++..+.+.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 172 DEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 238 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM--IAQGTPAELMRG 238 (265)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EEecCHHHhcCH
Confidence 9999999999999999999998665589999999999999999999999986543 345677777653
No 161
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-37 Score=320.45 Aligned_cols=205 Identities=22% Similarity=0.296 Sum_probs=167.8
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc------------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI------------ 410 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~------------ 410 (605)
++.|+.. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|+|. +..+
T Consensus 28 ~~~y~~~~~~~~~~L~~vsl~i~~G-----e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 102 (320)
T PRK13631 28 YCVFDEKQENELVALNNISYTFEKN-----KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITN 102 (320)
T ss_pred EEEeCCCCcccccceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccccc
Confidence 7788642 24789999999888 78999999999999999999999999999875 2111
Q ss_pred ------C-----cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHH
Q 040300 411 ------P-----EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGEL 473 (605)
Q Consensus 411 ------~-----~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~ 473 (605)
. ...++|++|++. ..+..|+.+++...... ... ....+.++++.+++. .+.++.+.+||||||
T Consensus 103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 182 (320)
T PRK13631 103 PYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQK 182 (320)
T ss_pred ccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHH
Confidence 0 135899999863 34566999887532211 111 123567889999997 689999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCC
Q 040300 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANA 553 (605)
Q Consensus 474 QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~ 553 (605)
|||+|||||+++|++|||||||++||+.++..++++|+++.. .|.|||+||||++++..+|||+++|+++.. ...++
T Consensus 183 qRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i--~~~g~ 259 (320)
T PRK13631 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKI--LKTGT 259 (320)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCC
Confidence 999999999999999999999999999999999999999854 589999999999999999999999986554 35688
Q ss_pred hhhhhccc
Q 040300 554 PQSLLTGM 561 (605)
Q Consensus 554 p~~~~~~~ 561 (605)
+++++...
T Consensus 260 ~~~~~~~~ 267 (320)
T PRK13631 260 PYEIFTDQ 267 (320)
T ss_pred HHHHhcCH
Confidence 88887653
No 162
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1e-36 Score=325.11 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=169.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc----ccC-----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV----EIP----------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~----~~~----------- 411 (605)
..+|+. ...+++++|++.+| |+++|+|+||||||||+|+|+|+++|++|++. +. ...
T Consensus 31 ~~~~g~-~~~l~~vsf~i~~G-----ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 31 LDETGL-VVGVANASLDIEEG-----EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHhhCC-EEEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHh
Confidence 334544 34689999999888 78999999999999999999999999999875 21 111
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
...++|++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 13599999998766668999987543211 111 12456789999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||||++||+.++..+.+.|.++..+.++|+|+||||++++..+||||++|+++.. ...++|+++.+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i--v~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRI--IQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCHHHHhhC
Confidence 99999999999999999999999998766689999999999999999999999997554 356888888653
No 163
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.5e-36 Score=303.18 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=160.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---cceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---EFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---~~~i~y~~q~~~ 423 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+..
T Consensus 7 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 7 SKRFGK-QTAVNNISLTVPKN-----SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 566765 34688999998887 78999999999999999999999999999875 22111 236899999876
Q ss_pred CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040300 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~ 503 (605)
.....|+.+++.............+.++++.+++++..++++.+|||||+|||+|||||+.+|++|||||||++||+.++
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~ 160 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI 160 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHH
Confidence 55557999887432111112345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
..++++|+++.+ .|.|||++|||++++..+|||+++|+++..
T Consensus 161 ~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 161 QELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVL 202 (223)
T ss_pred HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEE
Confidence 999999999854 589999999999999999999999986543
No 164
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-37 Score=313.54 Aligned_cols=204 Identities=25% Similarity=0.366 Sum_probs=168.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+|
T Consensus 14 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 14 TLGYGKY-TVAENLTVEIPDG-----HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEECCE-EEeeecceEECCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 7778753 4688999998888 78999999999999999999999999999875 22211 13589999
Q ss_pred CcCCCCCcCcHHHHHHhhh-cc-----CCC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKI-RD-----SYT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~-~~-----~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+..|+.+++.... .. ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 167 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 9976656679998875321 10 011 123567889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||+|||+.++..+.++|+++.++.+.|||++|||++++..+|||+++|+++.. ...+++.++...
T Consensus 168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 234 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKI--VAQGAPKEIVTA 234 (265)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhhH
Confidence 9999999999999999999998665589999999999999999999999986543 345777777553
No 165
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=294.80 Aligned_cols=200 Identities=29% Similarity=0.451 Sum_probs=147.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CCh------
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDW------ 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~------ 140 (605)
+|++.+|.| +|+...-.+.+++ ..++||++||+|+|||||||+||+|++++.|++|.+.-. -+.
T Consensus 1 Ml~v~~l~K--------~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 1 MLEVTDLTK--------SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred Ceeeeehhh--------hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHH
Confidence 355666555 5554311233333 247999999999999999999999999999999987411 000
Q ss_pred -hhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 141 -QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 141 -~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.+.++...|. ..-|..-...+++. | .+.+.+ +...+.+.+.+++.+.|+|.+.+||.+.+||-
T Consensus 73 vrr~IGVl~~e-~glY~RlT~rEnl~------~--------Fa~L~~-l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~ 136 (245)
T COG4555 73 VRRKIGVLFGE-RGLYARLTARENLK------Y--------FARLNG-LSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136 (245)
T ss_pred HhhhcceecCC-cChhhhhhHHHHHH------H--------HHHHhh-hhhhHHHHHHHHHHHHhChHHHHHHHHhhhch
Confidence 0001100000 00011001111111 1 011111 23445578899999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||||+|||||+++|++|+|||||||||+.++..+.+.|++++++|++||+.||+++++..+||+|+++..+
T Consensus 137 G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred hhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999643
No 166
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-36 Score=301.72 Aligned_cols=188 Identities=25% Similarity=0.339 Sum_probs=156.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| +++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~g------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 7 TKRYGKK-RALDGVSLTLGPG------MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred EEEECCE-EEEcceeEEEcCC------cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 6677653 4688999988876 6999999999999999999999999999985 22211 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 8765555799987643211 1111 12456788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+||+.++..+.++|+++.. +.|+|+||||++++..+|||+++|+++.
T Consensus 160 ~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999853 5899999999999999999999998643
No 167
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=307.63 Aligned_cols=202 Identities=25% Similarity=0.350 Sum_probs=166.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 10 ~~~~~~-~~~l~~~sl~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 10 AKAYKG-RRVVEDVSLTVNSG-----EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred EEEeCC-EEEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 677765 34789999999888 78999999999999999999999999999875 22211 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999765555799988753211 1111 12356789999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||++||+.++..+.++|+++.. .|.|+|++|||++++..+||++++++++.. ...++++++.+
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~ 226 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHL--IAHGTPTEILQ 226 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeE--EeeCCHHHHhc
Confidence 9999999999999999999854 589999999999999999999999986543 34577777755
No 168
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=320.51 Aligned_cols=197 Identities=19% Similarity=0.253 Sum_probs=162.4
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC-
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS- 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~- 423 (605)
..+++++|++.+| |++||+|+||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 29 ~~l~~vsl~i~~G-----e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~ 103 (327)
T PRK11308 29 KALDGVSFTLERG-----KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYG 103 (327)
T ss_pred eEEeeeEEEECCC-----CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchh
Confidence 4688999999888 78999999999999999999999999999875 22211 135999999863
Q ss_pred -CCCcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 424 -PKFQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 424 -~~~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.....++.+++...... ... ....+.++++.++|. ..+++++.+|||||+|||+|||||+.+|++||+||||+
T Consensus 104 ~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts 183 (327)
T PRK11308 104 SLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVS 183 (327)
T ss_pred hcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 33456887766432111 111 124578899999996 57899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+.++..++++|+++.++.|.|+|+||||+.++.++||||++|..+.. ...++++++++.
T Consensus 184 ~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i--ve~g~~~~~~~~ 245 (327)
T PRK11308 184 ALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC--VEKGTKEQIFNN 245 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcC
Confidence 99999999999999999776799999999999999999999999986544 355777777664
No 169
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-36 Score=308.53 Aligned_cols=197 Identities=24% Similarity=0.422 Sum_probs=163.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc-
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ- 427 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~- 427 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|+......
T Consensus 11 ~~~~~~~-~vl~~vs~~i~~G-----e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~--~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 11 SVSFGQR-RVLSDVSLELKPG-----KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR--NGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred EEEECCc-eEEEeEEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE--CCccCEEEecccccccccc
Confidence 6777653 4688999998888 789999999999999999999999999999751 113469999998643322
Q ss_pred -CcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040300 428 -STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506 (605)
Q Consensus 428 -~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l 506 (605)
.++.+++... .. .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+
T Consensus 83 ~~~~~~~~~~~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 159 (251)
T PRK09544 83 PLTVNRFLRLR--PG-TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159 (251)
T ss_pred ChhHHHHHhcc--cc-ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 3666654321 11 1234567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.++|+++..+.+.|||+||||++++..+|||+++|+++ . ...++++++.+
T Consensus 160 ~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~-i--~~~g~~~~~~~ 209 (251)
T PRK09544 160 YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHH-I--CCSGTPEVVSL 209 (251)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCc-e--EeeCCHHHHhC
Confidence 99999986555899999999999999999999999863 2 35577777754
No 170
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=320.50 Aligned_cols=205 Identities=18% Similarity=0.245 Sum_probs=163.9
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC----Ceeeee--ccccC--------
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DSVEDS--DVEIP-------- 411 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p----~~G~i~--~~~~~-------- 411 (605)
++.|+.. ...+++++|++.+| |++||+|+||||||||+++|+|+++| ++|++. +..+.
T Consensus 10 ~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~ 84 (326)
T PRK11022 10 SVHFGDESAPFRAVDRISYSVKQG-----EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR 84 (326)
T ss_pred EEEECCCCccEEEEeeeEEEECCC-----CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence 5666542 24789999999988 78999999999999999999999984 788775 22221
Q ss_pred ---cceeEeecCcCC--CCCcCcHHHHHHhhhcc--CC---CCHHHHHHHHhhcCCc---hhhccCcCcCChhHHHHHHH
Q 040300 412 ---EFNVSYKPQKIS--PKFQSTVRHLLHQKIRD--SY---THPQFVSDVMKPLLIE---QLMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 412 ---~~~i~y~~q~~~--~~~~~tv~~~~~~~~~~--~~---~~~~~~~~~l~~l~l~---~~~~~~~~~LSGGe~QRvai 478 (605)
...++|+||+.. .....++.+.+...... .. .....+.++++.++|. ..+++++.+|||||+|||+|
T Consensus 85 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~i 164 (326)
T PRK11022 85 NLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMI 164 (326)
T ss_pred HHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHH
Confidence 125999999863 33446776544321111 11 1134577899999996 46789999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 479 CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 479 A~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
||||+.+|+|||+||||++||+.++..++++|+++.++.|.|+|+||||+.++.++||||++|.++.. ...+++++++
T Consensus 165 ArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~i--ve~g~~~~~~ 242 (326)
T PRK11022 165 AMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV--VETGKAHDIF 242 (326)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHh
Confidence 99999999999999999999999999999999999766799999999999999999999999986554 3567888877
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
+.
T Consensus 243 ~~ 244 (326)
T PRK11022 243 RA 244 (326)
T ss_pred hC
Confidence 54
No 171
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-37 Score=303.28 Aligned_cols=188 Identities=28% Similarity=0.402 Sum_probs=155.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i 415 (605)
+++|++. .. +++|++.+ + +++|+||||||||||+++|+|+++|++|++. +.... ...+
T Consensus 7 ~~~~~~~--~~-~vsl~i~~-e-----~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 7 EKRLPDF--TL-KIDFDLNE-E-----VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eEecCCe--ee-CceEEEcc-e-----eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 6677763 23 88887766 5 7999999999999999999999999999875 22110 2359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++|+.......|+.+++........ .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999765556799988753221111 112356789999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+|||+.++..+.++|+++.++.|.|+|++|||++++..+|||+++|+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999876558999999999999999999999998654
No 172
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=313.01 Aligned_cols=204 Identities=22% Similarity=0.302 Sum_probs=165.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 8 ~~~~~~~-~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 8 WFRYQDE-PVLKGLNLDFSLS-----PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred EEEcCCc-ccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 6777653 4689999999988 78999999999999999999999999999875 22211 135899
Q ss_pred ecCcCCC-CCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISP-KFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~-~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+... .+..++.+++...... .... ...+.++++.+++.++.++++.+|||||+|||+|||||+.+|++||||
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9998642 3445777765432111 1111 134567899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...+++++++...
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~~ 227 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQI--LTHGAPGEVFACT 227 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcCh
Confidence 99999999999999999999864 489999999999999999999999986543 3557888776643
No 173
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=306.68 Aligned_cols=201 Identities=24% Similarity=0.295 Sum_probs=164.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~ 413 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +..+. ..
T Consensus 9 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 9 NCFYGAH-QALFDITLDCPQG-----ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEEECCe-eeEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 6777653 4789999999888 78999999999999999999999999999875 22110 12
Q ss_pred eeEeecCcCCCCCcCcHHHHHHh-hhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQ-KIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~-~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
.++|+||+.......|+.+++.. .... ... ....+.++++.+++....++.+.+|||||+|||+|||||+.+|++
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 58999998765556799988742 1110 011 123567889999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
|||||||++||+.++..+.++|+++.+ .++|+|+||||++++..+|||+++|+++.. ...++++++.
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~ 229 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHI--VEQGDASCFT 229 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHhc
Confidence 999999999999999999999999854 589999999999999999999999986543 2446666543
No 174
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=309.95 Aligned_cols=202 Identities=23% Similarity=0.291 Sum_probs=164.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+.
T Consensus 12 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 12 HKRYGE-HEVLKGVSLQANAG-----DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccch
Confidence 677765 34689999999888 78999999999999999999999999999875 22111
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhh---ccCC--CCHHHHHHHHhhcCCchhh-ccCcCcCChhHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKI---RDSY--THPQFVSDVMKPLLIEQLM-DQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~---~~~~--~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGe~QRvaiA~ 480 (605)
...++|+||+.......|+++++.... .... .....+.++++.+++.+.. ++++.+|||||+|||+|||
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~lar 165 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 165 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 235999999976554579999874311 1111 1124567899999998764 8999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+.+..+ ..++++++..
T Consensus 166 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~--~~~~~~~~~~ 241 (257)
T PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIE--EEGAPEQLFG 241 (257)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEE--EeCCHHHhhh
Confidence 99999999999999999999999999999999854 5899999999999999999999999865432 4466666543
No 175
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-36 Score=302.49 Aligned_cols=195 Identities=24% Similarity=0.281 Sum_probs=145.1
Q ss_pred ceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 83 TTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+.. ...+++++ .+.+||+++|+|+||||||||+|+|+|+++|+.|++.. .|..+..+.....
T Consensus 7 l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~ 75 (216)
T TIGR00960 7 VSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF-----------NGQDLTRLRGREI 75 (216)
T ss_pred EEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEehhhcChhHH
Confidence 45566432 23566666 46899999999999999999999999999999999852 2222211100000
Q ss_pred -HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 -EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 -~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
...-...+.+|.....+. .++.+.+ ......+++.++++.+||.+..++.+.+|||||+||++||+|
T Consensus 76 ~~~~~~i~~~~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSD---RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHHhceEEecCcccccc---ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 000012223333221111 1222111 112335678899999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|.+
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 213 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSR 213 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999977789999999999999999999999964
No 176
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.6e-36 Score=307.75 Aligned_cols=203 Identities=25% Similarity=0.401 Sum_probs=167.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 8 ~~~~~~-~~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 8 SWSAGG-RLIVDGVDVTAPPG-----SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EEEECC-EEEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 667765 34789999999888 78999999999999999999999999999875 22211 12589999
Q ss_pred CcCCCCCcCcHHHHHHhhhc---cCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIR---DSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~---~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+..|+.+++..... ..+ .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99765567899998753210 000 1123567889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+.++..+.++|+++.+ .+.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 227 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRV--VAAGPPREVLTP 227 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCE--EEecCHHHhhCH
Confidence 999999999999999999999864 489999999999999999999999986543 345777777554
No 177
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.5e-37 Score=293.93 Aligned_cols=157 Identities=49% Similarity=0.751 Sum_probs=137.8
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHH
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVS 449 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 449 (605)
++.+||+++|+||||||||||+|+|+|+++|++|++. +....++|++|+..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~q~~~-------------------------- 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE---WDGITPVYKPQYID-------------------------- 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE---ECCEEEEEEcccCC--------------------------
Confidence 4445589999999999999999999999999999974 33345888887531
Q ss_pred HHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q 040300 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529 (605)
Q Consensus 450 ~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~ 529 (605)
|||||+|||+|||||+.+|+++||||||++||+.++..+.+.|+++.++.+.|+|+||||++
T Consensus 72 ------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 72 ------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred ------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 99999999999999999999999999999999999999999999986553489999999999
Q ss_pred HHHhhcCEEEEEeCCcceeeecCChhhhhccccccceecceEEE
Q 040300 530 MATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFR 573 (605)
Q Consensus 530 ~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 573 (605)
++..+||++++++++++.....+.|...+++.|.|+.+.-.+||
T Consensus 134 ~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (177)
T cd03222 134 VLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYLITFR 177 (177)
T ss_pred HHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHhhccccC
Confidence 99999999999998887766779999999999999876655553
No 178
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-36 Score=293.70 Aligned_cols=205 Identities=25% Similarity=0.324 Sum_probs=171.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+..|+. ...+.+++|++..| ||++|+|+||+|||||||+|+|+.+|.+|+|. +.++. +..++|+
T Consensus 10 ~~~YG~-~~~L~gvsl~v~~G-----eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 10 SAGYGK-IQALRGVSLEVERG-----EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred eecccc-eeEEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 667876 45799999999998 79999999999999999999999999999986 23322 2469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCC--CC-HHHHHHHHhhcC-CchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSY--TH-PQFVSDVMKPLL-IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~--~~-~~~~~~~l~~l~-l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
||.-..+..+||+||+........ .. ....+++.+.|- |.+..++..++|||||||.+||||||+.+|++||||||
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 998877778999999865321111 11 111455666664 66788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|.||-|.-..++.++|+++.++.|.||++|.++..++..+|||.+||+.+.. ...|+++++...+
T Consensus 164 s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gri--v~~G~~~eL~~~~ 228 (237)
T COG0410 164 SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRI--VLSGTAAELLADP 228 (237)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEE--EEecCHHHHhcCH
Confidence 9999999999999999999766688999999999999999999999997554 5678989888764
No 179
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=312.69 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=167.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 12 ~~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 12 SFRYPDAATYALKDVSFSVYEG-----EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEeCCCCccceeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEE
Confidence 6777642 34789999999888 78999999999999999999999999999875 22221 2359999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..|+.+++...... .... ...+.++++.+++.+..++.+.+|||||+|||+|||||+.+|+||||||
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99863 34567999987532211 1111 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
||+|||+.++..++++|+++.++.|.|||+||||++++.. |||+++++++.. ...++++++....
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i--~~~g~~~~~~~~~ 231 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEI--LEEGTPEEIFKSG 231 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHhcCH
Confidence 9999999999999999999876568999999999999975 999999986543 3567788776653
No 180
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=310.98 Aligned_cols=203 Identities=25% Similarity=0.322 Sum_probs=165.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (274)
T PRK13644 8 SYSYPDGTPALENINLVIKKG-----EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIV 82 (274)
T ss_pred EEEcCCCCceeeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEE
Confidence 667753234789999999888 78999999999999999999999999999875 22221 1359999
Q ss_pred cCcCCC-CCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISP-KFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~-~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++.. .+..|+.+++....... .. ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 83 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 83 FQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred EEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 998642 45579988874321111 11 12456788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+.++..++++|+++.. .|.|||++|||++++. .|||+++++.+.. ...++++++...
T Consensus 163 Pt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 225 (274)
T PRK13644 163 VTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELH-DADRIIVMDRGKI--VLEGEPENVLSD 225 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHh-hCCEEEEEECCEE--EEECCHHHHhcC
Confidence 9999999999999999999864 5899999999999995 5999999986543 355778877654
No 181
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=318.92 Aligned_cols=205 Identities=21% Similarity=0.338 Sum_probs=163.3
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC----CCeeeee--ccccC--------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK----PDSVEDS--DVEIP-------- 411 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~----p~~G~i~--~~~~~-------- 411 (605)
++.|+. ....+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+.
T Consensus 10 ~~~y~~~~~~~~~l~~vsl~i~~G-----e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (330)
T PRK15093 10 TIEFKTSDGWVKAVDRVSMTLTEG-----EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred EEEEeCCCCCEEEEeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence 566642 234689999999888 7899999999999999999999997 5789875 22211
Q ss_pred ---cceeEeecCcCCC--CCcCcHHHHHHhhhc-----cC-CC----CHHHHHHHHhhcCCch---hhccCcCcCChhHH
Q 040300 412 ---EFNVSYKPQKISP--KFQSTVRHLLHQKIR-----DS-YT----HPQFVSDVMKPLLIEQ---LMDQEVVNLSGGEL 473 (605)
Q Consensus 412 ---~~~i~y~~q~~~~--~~~~tv~~~~~~~~~-----~~-~~----~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~ 473 (605)
...++|++|+... ....|+.+.+..... .. .. ....+.++++.++|.+ .+++++.+|||||+
T Consensus 85 ~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~ 164 (330)
T PRK15093 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGEC 164 (330)
T ss_pred HHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 1259999998642 234678776542111 00 01 1245678999999973 56899999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCC
Q 040300 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANA 553 (605)
Q Consensus 474 QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~ 553 (605)
|||+|||||+.+|+||||||||++||+.++..++++|+++.++.|.|+|+||||+.++..+||||++|.++.. ...++
T Consensus 165 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i--ve~g~ 242 (330)
T PRK15093 165 QKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT--VETAP 242 (330)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECC
Confidence 9999999999999999999999999999999999999998766699999999999999999999999986554 35577
Q ss_pred hhhhhcc
Q 040300 554 PQSLLTG 560 (605)
Q Consensus 554 p~~~~~~ 560 (605)
+++++..
T Consensus 243 ~~~i~~~ 249 (330)
T PRK15093 243 SKELVTT 249 (330)
T ss_pred HHHHHhC
Confidence 7777653
No 182
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=313.74 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=164.8
Q ss_pred eeecCCce----eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTMV----KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~~----~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
+++|++.. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 13 ~~~~~~~~~~~~~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 87 (289)
T PRK13645 13 SYTYAKKTPFEFKALNNTSLTFKKN-----KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKR 87 (289)
T ss_pred EEEeCCCCccccceeeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHH
Confidence 66776432 3689999999888 78999999999999999999999999999875 22110
Q ss_pred -cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 412 -EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 412 -~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
...++|++|+.. ..+..|+.+++...... .... ...+.++++.+++. ++.++++.+|||||+|||+|||||+.
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~ 167 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM 167 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 125899999853 23456898877532111 1111 13456789999994 78899999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|++|||||||+|||+.++..++++|+++.++.++|||+||||++++..+|||+++++++.. ...+++++++..
T Consensus 168 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 241 (289)
T PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV--ISIGSPFEIFSN 241 (289)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999999999998765689999999999999999999999986543 345777777654
No 183
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=311.74 Aligned_cols=204 Identities=24% Similarity=0.330 Sum_probs=164.3
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~~~~~~~~~~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (280)
T PRK13649 9 SYTYQAGTPFEGRALFDVNLTIEDG-----SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQI 83 (280)
T ss_pred EEEcCCCCccccceeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHH
Confidence 6677542 23688999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|+.. ..+..|+.+++...... .... ...+.++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (280)
T PRK13649 84 RKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAME 163 (280)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 135899999852 23456999887532111 1111 23456788999997 578999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||++||+.++..+.++|+++.+ .+.|||+||||++++..+|||+++|+++.. ...++++++...
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 235 (280)
T PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKL--VLSGKPKDIFQD 235 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999999999999864 489999999999999999999999986543 345778877664
No 184
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=293.55 Aligned_cols=217 Identities=26% Similarity=0.390 Sum_probs=182.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+.+|.+. ..++++++++.+| .+++|+|||||||||||.+++.++++++|++. +..+. ..+++...
T Consensus 8 ~K~y~~~-~vl~~isl~i~~g-----~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 8 SKSYGTK-VVLDDVSLDIPKG-----GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred hHhhCCE-EeeccceeeecCC-----ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHH
Confidence 6677753 4689999999888 58999999999999999999999999999975 22221 12477788
Q ss_pred CcCCCCCcCcHHHHHHhh-hcc-----CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 420 QKISPKFQSTVRHLLHQK-IRD-----SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~-~~~-----~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
|........||++++... .+. ...+...+++.++.|+|+++.+++..+||||||||..||+.|+++.|.+||||
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence 887766778999988642 221 12345678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecceEE
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDITF 572 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~~~ 572 (605)
|.++||.++..+++++|++++.+.|+||++|-||+++|..++|.|+.|+++.. ...|+|+++.+..+. -+..+++++
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~v--v~~G~~~eii~~~~L~eiydm~i~v 239 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV--VKQGSPDEIIQPEILSEIYDMDIPV 239 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEE--EecCCHHHhcCHHHHHHHhcCCcee
Confidence 99999999999999999999999999999999999999999999999996543 578999999987542 233455555
Q ss_pred E
Q 040300 573 R 573 (605)
Q Consensus 573 ~ 573 (605)
.
T Consensus 240 ~ 240 (252)
T COG4604 240 E 240 (252)
T ss_pred E
Confidence 3
No 185
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=305.12 Aligned_cols=203 Identities=24% Similarity=0.247 Sum_probs=163.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 12 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (237)
T PRK11614 12 SAHYGK-IQALHEVSLHINQG-----EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIV 85 (237)
T ss_pred EEeeCC-ceeeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEe
Confidence 667765 34688999999888 78999999999999999999999999999875 22211 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc-cCC-CCHHHHHHHHhhc-CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIR-DSY-THPQFVSDVMKPL-LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~-~~~-~~~~~~~~~l~~l-~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
+|+.......|+.+++..... ... .....+.++++.+ ++.+..++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 998765445799988753211 111 1123355677777 5777888999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+.++..+.++|+++.+ .|.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 227 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHV--VLEDTGDALLAN 227 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEE--EeeCCHHHHhcC
Confidence 99999999999999999864 489999999999999999999999986543 355788887653
No 186
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=309.45 Aligned_cols=201 Identities=22% Similarity=0.301 Sum_probs=165.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe---eeee--ccccC------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---VEDS--DVEIP------------ 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~---G~i~--~~~~~------------ 411 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+. |++. +....
T Consensus 11 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 11 AKTFNQ-HQALHAVDLNIHHG-----EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred EEEeCC-eEEEecceEEEcCC-----cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHH
Confidence 677765 34689999998888 7899999999999999999999999874 8764 22111
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhcc----------CC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHH
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRD----------SY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~~----------~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA 479 (605)
...++|+||+....+..|+.+++...... .. .....+.++++.+++.+..++.+.+|||||+|||+||
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 12589999997665667999887532110 00 1124567899999999999999999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 480 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||+.+|++|||||||++||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+++.. ...++++++
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i--~~~g~~~~~ 240 (262)
T PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV--FYDGSSQQF 240 (262)
T ss_pred HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHh
Confidence 9999999999999999999999999999999998765689999999999999999999999986543 356777775
No 187
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=307.54 Aligned_cols=203 Identities=27% Similarity=0.416 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|+|
T Consensus 9 ~~~~~~-~~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 9 TVGYGT-KRILNDLSLSLPTG-----KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEEECC-EEEEeeeeeEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 677775 34689999999888 78999999999999999999999999999875 22111 12599999
Q ss_pred CcCCCCCcCcHHHHHHhhhc---cCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIR---DSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~---~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+.......|+.+++..... ..+ .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 162 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98765555689888653211 001 1123567889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||+|||+.++..+.++|+++.. .+.|+|++|||++++..+|||+++++++.. ...++++++.+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 228 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHV--MAQGTPEEVMTP 228 (255)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeE--EEEcCHHHhcCH
Confidence 999999999999999999999854 489999999999999999999999986543 345677777653
No 188
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.6e-37 Score=316.20 Aligned_cols=194 Identities=29% Similarity=0.443 Sum_probs=148.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.....|.+++ .+++|+++||+||||||||||+|+|+|+++|++|++.. .|.+....... .
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i-----------~G~~~~~~~~~-~ 76 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV-----------LGYDVVKEPAK-V 76 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------cCEeCccCHHH-H
Confidence 45668884335677777 46899999999999999999999999999999999852 12111110000 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc-------Cc--hHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQ--KDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~--~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-...+.||.....|.. ++.+.+ .. ...+++++++++.++|.+..++++++||+|||||++||.||
T Consensus 77 --~~~igy~~~~~~~~~~l---T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 77 --RRRIGYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred --HhheEEEccCCCCCccc---cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 00122233332222211 222221 11 23456899999999999877899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCC-cEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN-SYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g-~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++|||.++.+++++|++++++| .||+++||.++++..+||+|++|+++
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999886 89999999999999999999999754
No 189
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.8e-36 Score=306.93 Aligned_cols=203 Identities=20% Similarity=0.299 Sum_probs=163.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cC----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IP---------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~---------- 411 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.. +.
T Consensus 13 ~~~~~~~-~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~ 86 (258)
T PRK11701 13 TKLYGPR-KGCRDVSFDLYPG-----EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRL 86 (258)
T ss_pred EEEcCCc-eeeeeeeEEEeCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHH
Confidence 6777653 4688999998888 78999999999999999999999999999875 222 11
Q ss_pred -cceeEeecCcCC--CCCcCcHHHHHHhhhc--cCC---CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHH
Q 040300 412 -EFNVSYKPQKIS--PKFQSTVRHLLHQKIR--DSY---THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 412 -~~~i~y~~q~~~--~~~~~tv~~~~~~~~~--~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...++|++|+.. .....|+.+++..... ... .....+.++++.+++. ...++.+.+|||||+|||+|||||
T Consensus 87 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral 166 (258)
T PRK11701 87 LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHH
Confidence 124899999863 2334567665532111 100 1123467889999997 478999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.+.|+++..+.|.|||+||||++++..+||++++|+++.. ...++++++++
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~~ 241 (258)
T PRK11701 167 VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV--VESGLTDQVLD 241 (258)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhc
Confidence 9999999999999999999999999999998765689999999999999999999999986543 34577777654
No 190
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.8e-36 Score=305.81 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=163.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +.... .
T Consensus 8 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 8 NLFYGEK-EALKNINLDIPKN-----QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEECCe-eeecceeEEECCC-----CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 6677653 4688999998888 789999999999999999999999998 99875 22221 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+..... .|+.+++...... .. . ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 35999999876544 8999887532111 11 1 123567889999998 7889999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..++++|+++.+ +.|+|+||||++++..+|||+++|+++.. ...++++++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 232 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGEL--VEYGPTEQIFT 232 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 99999999999999999999999999999854 48999999999999999999999986543 34577777654
No 191
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=310.90 Aligned_cols=206 Identities=23% Similarity=0.321 Sum_probs=166.9
Q ss_pred eeecCCc-----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cc
Q 040300 349 RYKYPTM-----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EF 413 (605)
Q Consensus 349 ~~~y~~~-----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~ 413 (605)
+++|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ..
T Consensus 11 ~~~~~~~~~~~~~~vl~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 85 (280)
T PRK13633 11 SYKYESNEESTEKLALDDVNLEVKKG-----EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85 (280)
T ss_pred EEEcCCCCCCCCcceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhh
Confidence 6777632 23789999999888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
.++|+||++. ..+..++.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++
T Consensus 86 ~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l 165 (280)
T PRK13633 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC 165 (280)
T ss_pred heEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5899999863 23445788876432111 111 124567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
|||||||+|||+.++..+.++|+++.++.|.|||+||||++++.. |||+++|+++.. ...+++++++....
T Consensus 166 lllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i--~~~g~~~~~~~~~~ 236 (280)
T PRK13633 166 IIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKV--VMEGTPKEIFKEVE 236 (280)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEE--EEecCHHHHhcChH
Confidence 999999999999999999999999866568999999999999986 999999986543 35688888876543
No 192
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-36 Score=294.59 Aligned_cols=206 Identities=25% Similarity=0.323 Sum_probs=151.9
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.+|.+ +||.+ ..+++++ .+.+||+++|+|++|+|||||+|+|.|+++|+.|+|.
T Consensus 7 ~~I~vr~v~~--------~fG~~-~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~----------- 66 (263)
T COG1127 7 PLIEVRGVTK--------SFGDR-VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL----------- 66 (263)
T ss_pred ceEEEeeeee--------ecCCE-EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE-----------
Confidence 3677777655 56554 3455555 3579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHH-HHHHHHHhhcccccccchh-hhhchhh----h--hcCchHHHHHHHHHHhhcCCchh-hcccCCCC
Q 040300 147 FRGSELQNYFTRI-LEDNLKAIIKPQYVDHIPK-AVQGNVG----Q--VLDQKDERDMKADLCTDLDLNQV-IDRNVGDL 217 (605)
Q Consensus 147 ~~g~~l~~~~~~~-~~~~~~~~~~~q~~~~~~~-~~~~~v~----~--~l~~~~~~~~~~~~l~~l~L~~~-~dr~v~~L 217 (605)
+.|.++....... +.-..+..+..|.-..+.. .+..+|. + -+.+...++.+..-++.+||... .++.+++|
T Consensus 67 i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL 146 (263)
T COG1127 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146 (263)
T ss_pred EcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh
Confidence 2222222211100 0000001111221111111 1112221 1 13445567778888999999876 99999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCcc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKP 293 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~ 293 (605)
||||++|+|||||++.+|+++++||||+||||.+...+-++|++|.+. |.|+++||||++.+..+||++++|+.+.
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gk 223 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGK 223 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCE
Confidence 999999999999999999999999999999999999999999999986 9999999999999999999999997543
No 193
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.1e-36 Score=299.88 Aligned_cols=191 Identities=30% Similarity=0.424 Sum_probs=144.8
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..+
T Consensus 3 ~~l~~~~~~~-~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~~~~~---- 66 (213)
T cd03235 3 EDLTVSYGGH-PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV-----------FGKPLEKE---- 66 (213)
T ss_pred ccceeEECCE-EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-----------CCccHHHH----
Confidence 4567788653 3566666 46899999999999999999999999999999999852 22211100
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhc-------------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRva 226 (605)
....++.+|.....+ .+..++.+.+ ......+++.++++.+++.+.+++++.+|||||+||++
T Consensus 67 ---~~~i~~v~q~~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 67 ---RKRIGYVPQRRSIDR-DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ---HhheEEecccccccc-CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH
Confidence 001112222111000 0000111110 01223456888999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|++
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 99999999999999999999999999999999999987789999999999999999999999975
No 194
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-37 Score=306.58 Aligned_cols=201 Identities=28% Similarity=0.374 Sum_probs=151.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CCh---hh-
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDW---QE- 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~---~~- 142 (605)
+|.|.|..+ +|+.-. .+.+++ .++.||.++|+|||||||||||++|+|++.|+.|.|... ..| ..
T Consensus 2 ~i~i~~~~~--------~~~~~~-a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKK--------RFGAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhh--------hccccc-ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc
Confidence 466666554 444321 233444 357999999999999999999999999999999998522 111 11
Q ss_pred -hhhhhccchhhhhHH---HHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 143 -ILTYFRGSELQNYFT---RILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 143 -~~~~~~g~~l~~~~~---~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
....-.|..+|+|.. ..+.+++....+.+ .........+.++.++|+.+.|+++.+|++.+||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-------------~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLS 139 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-------------KERPSEAEIRARVEELLRLVQLEGLADRYPAQLS 139 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-------------ccCCChhhHHHHHHHHHHHhcccchhhcCchhcC
Confidence 111222444555431 01222222211111 0111234568899999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||+|||||||||+.+|++|+||||++.||.+-|.++.++|+++.+. |.|+++||||.+++..+||||++|..
T Consensus 140 GGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~ 213 (345)
T COG1118 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213 (345)
T ss_pred hHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecC
Confidence 99999999999999999999999999999999999999999999876 99999999999999999999999963
No 195
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.4e-36 Score=308.85 Aligned_cols=197 Identities=20% Similarity=0.264 Sum_probs=159.6
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCC--CC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKIS--PK 425 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~--~~ 425 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+.. ..
T Consensus 27 ~~l~~vsl~i~~G-----e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (267)
T PRK15112 27 EAVKPLSFTLREG-----QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101 (267)
T ss_pred ceeeeeeEEecCC-----CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcC
Confidence 4688999998888 78999999999999999999999999999875 22211 135999999864 22
Q ss_pred CcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 426 FQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
...|+.+++...... ... ....+.++++.+++. ...++++.+|||||+|||+||+||+.+|++|||||||++||
T Consensus 102 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 181 (267)
T PRK15112 102 PRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181 (267)
T ss_pred cchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCC
Confidence 345777766432111 111 123567889999994 77889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 182 ~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 240 (267)
T PRK15112 182 MSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEV--VERGSTADVLAS 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EecCCHHHHhcC
Confidence 99999999999998765589999999999999999999999986543 345677777654
No 196
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-37 Score=321.04 Aligned_cols=196 Identities=27% Similarity=0.387 Sum_probs=155.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CChhhhh--
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDWQEIL-- 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~~~~~-- 144 (605)
+|+|.| ++|+|| +...+++++ .+++||++.|+||||||||||||+|||+..|++|+|... .++....
T Consensus 5 ~l~i~~--------v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 5 ALEIRN--------VSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE 75 (352)
T ss_pred eEEEEe--------eeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence 677776 456888 446788887 578999999999999999999999999999999988521 1111100
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhhhc------CchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQVL------DQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.+-.|..+|+| ..+|.. +..++..-| .+.+.++++.++++.++|+++.+|++++|
T Consensus 76 kR~ig~VFQ~Y------------------ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 76 KRPIGMVFQSY------------------ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred hcccceeecCc------------------ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 11124445554 222221 112222111 12345679999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||+|||||||||+.+|++||||||.|+||.+-|.++...|+++.++ |.|.|+||||.+++..++|||.+|+.
T Consensus 138 SGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~ 212 (352)
T COG3842 138 SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMND 212 (352)
T ss_pred ChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccC
Confidence 999999999999999999999999999999999999999999999875 99999999999999999999999964
No 197
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.2e-36 Score=299.87 Aligned_cols=195 Identities=27% Similarity=0.355 Sum_probs=141.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL- 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~- 160 (605)
++++|+.+...+.+++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|.++..+.....
T Consensus 7 l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 7 VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-----------AGEDVNRLRGRQLP 75 (214)
T ss_pred eeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEcccCCHHHHH
Confidence 3445532222455555 35799999999999999999999999999999999852 2222111100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-.-..++.+|.....+. .++.+. .......+++.++++.++|.+.+++.+.+|||||+||++||+||
T Consensus 76 ~~~~~i~~~~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPD---RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred HHHhheEEEecChhhccC---CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 000011122222111110 111111 11123346788999999999889999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.++++|||+||||++++..+||++++|++
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecC
Confidence 999999999999999999999999999999977789999999999999999999999964
No 198
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.3e-36 Score=295.92 Aligned_cols=185 Identities=26% Similarity=0.340 Sum_probs=153.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C--------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P--------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~--------~~~i 415 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ . ...+
T Consensus 5 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 5 SKKFGD-KIILDDLNLTIEKG-----KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred EEEECC-EEEEeceEEEEeCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 667765 34689999999888 78999999999999999999999999999875 2221 1 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+.......|+.+++...... ... ....+.++++.+++.+..++.+.+|||||+||++|||||+.+|++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999987654557999877532111 111 124567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
||||++||+.++..+.++|+++.. .+.|+|++|||++++. +||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 999999999999999999999865 4899999999999774 79999875
No 199
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=284.76 Aligned_cols=201 Identities=21% Similarity=0.280 Sum_probs=172.0
Q ss_pred eeecCCce-eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc--ccCcceeEeecCcCC
Q 040300 349 RYKYPTMV-KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV--EIPEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~-~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~--~~~~~~i~y~~q~~~ 423 (605)
+.+|+... ..+.+++|++.+| |.++++||+||||||||++++|+.+|+.|++. +. .-+...-+.++|+..
T Consensus 10 sl~y~g~~~~~le~vsL~ia~g-----e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~ 84 (259)
T COG4525 10 SLSYEGKPRSALEDVSLTIASG-----ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEA 84 (259)
T ss_pred EEecCCcchhhhhccceeecCC-----CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCc
Confidence 67777532 2688999999998 67999999999999999999999999999885 22 234446789999988
Q ss_pred CCCcCcHHHHHHhhhccC-C---CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIRDS-Y---THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
..+.+++.+|+.....-. . .....+.+.+..+|+++..++++.+|||||||||.|||||+.+|++||||||+++||
T Consensus 85 LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlD 164 (259)
T COG4525 85 LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164 (259)
T ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHH
Confidence 777889999876533221 1 123467789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCCh
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAP 554 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p 554 (605)
.-.|+.+..+|-++.++.|+.+++||||++++..+|+|++||+++|+.....-+|
T Consensus 165 a~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 165 ALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999999999999999999999999999988765544444
No 200
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-36 Score=299.43 Aligned_cols=194 Identities=28% Similarity=0.370 Sum_probs=143.5
Q ss_pred CceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 82 DTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 82 ~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
+++++|+.. ...+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|.++.......
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~ 72 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV-----------DGKDLTKLSLKE 72 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-----------CCEEcccCCHHH
Confidence 466677642 23455665 45799999999999999999999999999999999852 121111100000
Q ss_pred HHHHHHHhhcccccc-cchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVD-HIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~-~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
... ..++.+|... ..+ ..++.+.+ .......++.++++.++|.+.+++++.+|||||+||++||+
T Consensus 73 ~~~--~i~~~~q~~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 73 LRR--KVGLVFQNPDDQFF---GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred HHh--hceEEecChhhhcC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 000 1112222210 011 01111111 11223456788999999998999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|++|||||||++||+..+..+.+.|+++.+++.|||+||||++++..+||+|++|..
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999987789999999999999999999999964
No 201
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.8e-36 Score=301.03 Aligned_cols=195 Identities=19% Similarity=0.283 Sum_probs=157.7
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC----Ceeeee--ccccC-----cceeEeecCcCC--CC
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DSVEDS--DVEIP-----EFNVSYKPQKIS--PK 425 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p----~~G~i~--~~~~~-----~~~i~y~~q~~~--~~ 425 (605)
+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ...++|++|+.. ..
T Consensus 2 l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 2 VQDLNLSLKRG-----EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred ccceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcC
Confidence 56788888888 78999999999999999999999999 899875 22211 236999999864 22
Q ss_pred CcCcHHHHHHhhhcc-CC-C--CHHHHHHHHhhcCCc---hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 426 FQSTVRHLLHQKIRD-SY-T--HPQFVSDVMKPLLIE---QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~-~~-~--~~~~~~~~l~~l~l~---~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
...|+.+++...... .. . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 236887765322111 11 1 123467899999998 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..+.+.|+++.++.+.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 216 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI--VERGTVKEIFYN 216 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 999999999999998665589999999999999999999999986543 355777777643
No 202
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.6e-36 Score=316.25 Aligned_cols=205 Identities=18% Similarity=0.243 Sum_probs=164.3
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC---eeeee--ccccC---------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD---SVEDS--DVEIP--------- 411 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~---~G~i~--~~~~~--------- 411 (605)
++.|+. ....+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +..+.
T Consensus 19 ~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~ 93 (330)
T PRK09473 19 RVTFSTPDGDVTAVNDLNFSLRAG-----ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNK 93 (330)
T ss_pred EEEEecCCCCEEEEeeeEEEEcCC-----CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHH
Confidence 666642 234689999999888 789999999999999999999999996 89875 22221
Q ss_pred --cceeEeecCcCC--CCCcCcHHHHHHhhh--ccCCC---CHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHHHH
Q 040300 412 --EFNVSYKPQKIS--PKFQSTVRHLLHQKI--RDSYT---HPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVALC 479 (605)
Q Consensus 412 --~~~i~y~~q~~~--~~~~~tv~~~~~~~~--~~~~~---~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRvaiA 479 (605)
...|+|++|+.. ....+|+.+++.... ..... ....+.++++.+++.+ ..++++.+|||||+|||+||
T Consensus 94 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IA 173 (330)
T PRK09473 94 LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA 173 (330)
T ss_pred HhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHH
Confidence 125999999963 334567877653221 11111 1245678899999964 45789999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 480 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||+.+|+|||+||||++||+.++..++++|+++.++.|.|+|+||||+.++.++||||+||.++.. ...+++++++.
T Consensus 174 rAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i--ve~g~~~~i~~ 251 (330)
T PRK09473 174 MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT--MEYGNARDVFY 251 (330)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCHHHHHh
Confidence 9999999999999999999999999999999999776799999999999999999999999986554 35578888876
Q ss_pred c
Q 040300 560 G 560 (605)
Q Consensus 560 ~ 560 (605)
.
T Consensus 252 ~ 252 (330)
T PRK09473 252 Q 252 (330)
T ss_pred C
Confidence 4
No 203
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=309.63 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=166.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe---eeee--ccccC-------ccee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---VEDS--DVEIP-------EFNV 415 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~---G~i~--~~~~~-------~~~i 415 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++ |++. +..+. ...+
T Consensus 12 ~~~~~~~~~~~l~~v~l~i~~G-----e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~i 86 (282)
T PRK13640 12 SFTYPDSKKPALNDISFSIPRG-----SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKV 86 (282)
T ss_pred EEEcCCCCccceeeEEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhhe
Confidence 6777642 23688999999888 7899999999999999999999999997 7764 22221 1358
Q ss_pred EeecCcCC-CCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 416 SYKPQKIS-PKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 416 ~y~~q~~~-~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+|++|+.. ..+..|+.+++....... ... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||
T Consensus 87 g~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~lll 166 (282)
T PRK13640 87 GIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIII 166 (282)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999863 345679999875322111 111 1346778999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||||+|||+.++..+.++|+++.++.|.|||+||||++++. +|||+++|+++.. ...++++++....
T Consensus 167 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~~~~~~ 234 (282)
T PRK13640 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKL--LAQGSPVEIFSKV 234 (282)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEeCCHHHHhcCH
Confidence 999999999999999999999986656899999999999985 7999999986543 3567888876653
No 204
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.8e-36 Score=297.34 Aligned_cols=193 Identities=30% Similarity=0.384 Sum_probs=143.8
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.....+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+... .
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~---~ 68 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL-----------NGKPIKAK---E 68 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEhhhH---H
Confidence 356777865123466666 46899999999999999999999999999999999852 12211100 0
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.. -...+.+|.... ..+..++.+.+. ......++.++++.++|.+.+++.+.+|||||+||++||+||+.+
T Consensus 69 ~~--~~i~~~~q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 69 RR--KSIGYVMQDVDY--QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred hh--cceEEEecChhh--hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 00 001111221100 000112222111 011235678999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+||++++|+.
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 201 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLAN 201 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999977799999999999999999999999964
No 205
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-36 Score=303.86 Aligned_cols=202 Identities=19% Similarity=0.234 Sum_probs=163.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC-------cce
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~-------~~~ 414 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ...
T Consensus 10 ~~~~~~~-~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 10 KVSFGQV-EVLDGVNLEIPDN-----TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEEECCe-eeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 6677653 4688999998888 78999999999999999999999984 689875 22211 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhc--cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIR--DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
++|++|+....+..|+.+++..... ..... ...+.++++.+++. +.+++++.+|||||+|||+|||||+.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999765567899998753211 11111 23467789999985 45789999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|++|||||||++||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+++.. ...++++++.+.
T Consensus 164 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 235 (250)
T PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQI--VEWGPTREVFTN 235 (250)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeE--EEECCHHHHHcC
Confidence 999999999999999999999999999984 3 79999999999999999999999986543 345777777543
No 206
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-36 Score=307.38 Aligned_cols=204 Identities=29% Similarity=0.449 Sum_probs=164.5
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 14 ~~~~~~~~~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 14 SFSYPNSENNALKNVSFEINEG-----EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred EEEcCCCCccceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence 677752 234688999998888 78999999999999999999999999999875 22211 2358999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..|+.+++...... .+.. ...+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99863 34457999987532211 1111 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+|||+.++..++++|+++.++.+.|+|++|||++++. +|||+++|+++.. ...++++++...
T Consensus 169 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 232 (271)
T PRK13632 169 STSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKL--IAQGKPKEILNN 232 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEE--EEecCHHHHhcC
Confidence 999999999999999999986544589999999999986 7999999986543 345677776554
No 207
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.6e-36 Score=315.29 Aligned_cols=198 Identities=27% Similarity=0.446 Sum_probs=150.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+++||++||+||||||||||+++|+|+++|+.|++. +
T Consensus 7 ~i~i~~l--------~k~~~~~-~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~-----------i 66 (306)
T PRK13537 7 PIDFRNV--------EKRYGDK-LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS-----------L 66 (306)
T ss_pred eEEEEeE--------EEEECCe-EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-----------E
Confidence 5666665 5577643 4566666 4689999999999999999999999999999999874 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.++...... . ....++.+|.....+. .++.+.+ .....+.++.++++.++|.+.+++++++||
T Consensus 67 ~G~~~~~~~~~-~--~~~ig~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 140 (306)
T PRK13537 67 CGEPVPSRARH-A--RQRVGVVPQFDNLDPD---FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELS 140 (306)
T ss_pred CCEecccchHH-H--HhcEEEEeccCcCCCC---CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCC
Confidence 22222111000 0 0112233333221111 0121111 112334677899999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||+||++||+||+++|++|||||||++||+.++.+++++|++++++|+|||++||+++++..+||+|++|+.+
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999877999999999999999999999999743
No 208
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.9e-36 Score=289.87 Aligned_cols=172 Identities=52% Similarity=0.834 Sum_probs=147.0
Q ss_pred CCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 80 DKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 80 ~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
-.+++++||... .+.+...+++||+++|+|+||||||||+|+|+|+++|+.|++. +.|..+
T Consensus 3 ~~~l~~~~~~~~-~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~g~~i------- 63 (177)
T cd03222 3 YPDCVKRYGVFF-LLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-----------WDGITP------- 63 (177)
T ss_pred CCCeEEEECCEE-EEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE-----------ECCEEE-------
Confidence 367889998753 3444435689999999999999999999999999999999984 222110
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
.+.+|.. .|||||+||++||+||+.+|+++|
T Consensus 64 -------~~~~q~~------------------------------------------~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 64 -------VYKPQYI------------------------------------------DLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred -------EEEcccC------------------------------------------CCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0001100 099999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcCC-cEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCC
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRPN-SYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVP 318 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~g-~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~ 318 (605)
|||||++||+..+..+.++|+++++++ .|||+||||++++..+||++++|.++++.|+++..|..+++++|.|+++|++
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYLI 174 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHhhcc
Confidence 999999999999999999999997664 8999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 040300 319 T 319 (605)
Q Consensus 319 ~ 319 (605)
.
T Consensus 175 ~ 175 (177)
T cd03222 175 T 175 (177)
T ss_pred c
Confidence 3
No 209
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.9e-36 Score=334.41 Aligned_cols=202 Identities=19% Similarity=0.265 Sum_probs=167.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 18 ~~~~~~~-~il~~vsl~i~~G-----e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 18 SKQYSGV-EVLKGIDFTLHAG-----EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EEEeCCc-eeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 7778753 4689999999888 68999999999999999999999999999875 22211 1358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+.......||.+++.............+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred eccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 99976556679999875432111111345678999999998899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+.+.. ...++++++..
T Consensus 172 D~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 229 (510)
T PRK15439 172 TPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTI--ALSGKTADLST 229 (510)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecChHHcCH
Confidence 99999999999999865 489999999999999999999999986543 24577776654
No 210
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.7e-36 Score=300.03 Aligned_cols=198 Identities=26% Similarity=0.411 Sum_probs=143.3
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++++|+.. ...+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+.....
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-----------~g~~~~~~~~ 73 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV-----------DGTDISKLSE 73 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE-----------CCEehhhcch
Confidence 456677641 23566666 46899999999999999999999999999999999852 2222211100
Q ss_pred HHHHH--HHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 158 RILED--NLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 158 ~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
..... ....++.+|.....+. .+..++.. . .......+++.++++.+||.+.+++.+.+|||||+||++||+
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 74 KELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHH
Confidence 00000 0011222222111111 11111110 0 011223456788999999999899999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|++|||||||++||+..+..+.++|+++.+ .+.|||+||||++++. +||++++|+.
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~ 215 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRD 215 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeC
Confidence 99999999999999999999999999999999987 5899999999999997 9999999964
No 211
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=298.13 Aligned_cols=203 Identities=26% Similarity=0.298 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~~-~il~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 7 SKFYGGF-VALDGVSLDIKEG-----EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEEeCCe-eeeccceEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 6777653 4689999999888 78999999999999999999999999999875 2221 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++....... .. ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 76544679988875321111 11 123567789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.++|+++.++.|.|||++|||++++..+|||+++++.+.. ...+++.++..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~--~~~~~~~~~~~ 220 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI--QQIGTPEEIYE 220 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EecCCHHHHHh
Confidence 9999999999999998665589999999999999999999999986543 24456665543
No 212
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-36 Score=319.35 Aligned_cols=199 Identities=21% Similarity=0.329 Sum_probs=147.9
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.+ ...|++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++. +.|.++......
T Consensus 7 lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~-----------i~G~~i~~~~~~ 75 (343)
T TIGR02314 7 ITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI-----------VDGQDLTTLSNS 75 (343)
T ss_pred EEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-----------ECCEECCcCCHH
Confidence 45566421 13566666 4689999999999999999999999999999999985 223222211000
Q ss_pred -HHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 -ILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 -~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
+........+.+|.....+. .+..++... ......++++.++++.+||.+.+++++.+|||||+|||+|||||
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 00001112333343322221 111122110 12233456788999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++||||||||+||+.++..++++|+++.++ |.|||+||||++++..+||+|++|+++
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G 217 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNG 217 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999875 899999999999999999999999754
No 213
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=282.54 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=170.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------C----
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------P---- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~---- 411 (605)
..+|+... +++++||+...| +++.|+|.+|||||||||||.=+.+|+.|.|. +..+ +
T Consensus 13 HK~~G~~e-VLKGvSL~A~~G-----dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~ 86 (256)
T COG4598 13 HKRYGEHE-VLKGVSLQANAG-----DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKR 86 (256)
T ss_pred Hhhcccch-hhcceeeecCCC-----CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHH
Confidence 56677643 689999999888 68999999999999999999999999999874 1110 0
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhhc---cC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKIR---DS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~~---~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
+.++++++|+......+||.+++...-. .. ....+.+..+|..+||.+..+.+|..||||||||++||||
T Consensus 87 q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARa 166 (256)
T COG4598 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARA 166 (256)
T ss_pred HHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHH
Confidence 1147899998777667899988753211 10 1112467789999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|+++|+++|+||||++|||+-.-+++++++++++ .|.|+++|||.|.|+..++.+|+.++.+.. -..|+|++++...
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~i--EE~G~P~qvf~nP 243 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKI--EEEGPPEQVFGNP 243 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeeccee--cccCChHHHhcCC
Confidence 9999999999999999999999999999999976 499999999999999999999999986543 3569999998763
No 214
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.9e-36 Score=294.46 Aligned_cols=186 Identities=20% Similarity=0.229 Sum_probs=156.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 8 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 8 ACERDE-RILFSGLSFTLNAG-----ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred EEEECC-EEEEecceEEECCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 666765 34688999998888 78999999999999999999999999999875 22211 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
+.......|+.+++...... .......+.++++.+++.+..++++.+|||||+|||+||+||+++|++|||||||++||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 161 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 86655557999987542211 11234567789999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
+.++..+.++|+++.+ .+.|+|+||||++++..+.+|++++
T Consensus 162 ~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 162 KQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999854 5899999999999999988899877
No 215
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1e-35 Score=300.65 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|++ +|++|++. +.... ...++
T Consensus 7 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 7 HVSVED-KEILKGVNLTVKKG-----EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred EEEECC-EEEEeccceEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 677765 34688999998888 789999999999999999999995 79999875 22111 12489
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc--cC------CCC---HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR--DS------YTH---PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~--~~------~~~---~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......|+.+++..... .. ... ...+.++++.+++. ...++++. +|||||||||+|||||+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 99999766556788887643211 00 010 23467789999997 57788887 59999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChhhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~~~ 557 (605)
.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+ |||+++|+++.. ...++++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~ 232 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRI--VKSGDVELA 232 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEE--EEecCHHHh
Confidence 99999999999999999999999999999854 589999999999999998 899999986543 234565543
No 216
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=305.53 Aligned_cols=204 Identities=24% Similarity=0.346 Sum_probs=166.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC--------eeeee--ccccC-------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--------SVEDS--DVEIP------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~--------~G~i~--~~~~~------- 411 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +....
T Consensus 8 ~~~~~~~-~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 8 HVARRHR-AILRDLSLRIEPG-----RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEECCE-eEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 6667653 4689999999888 789999999999999999999999998 88875 22211
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhcc-----C-CC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRD-----S-YT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-----~-~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
...++|+||+....+..|+.+++...... . .. ....+.++++.+++....++++.+|||||+|||+|||||+
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 12479999986555678999987432110 0 11 1235678899999999999999999999999999999999
Q ss_pred ---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCCh
Q 040300 484 ---------KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAP 554 (605)
Q Consensus 484 ---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p 554 (605)
.+|++|||||||++||+.++..+.++|+++.++.+.|||+||||++++..+|||+++++++.. ...+++
T Consensus 162 ~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 239 (272)
T PRK13547 162 QLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI--VAHGAP 239 (272)
T ss_pred ccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE--EEecCH
Confidence 499999999999999999999999999998665589999999999999999999999986543 345777
Q ss_pred hhhhcc
Q 040300 555 QSLLTG 560 (605)
Q Consensus 555 ~~~~~~ 560 (605)
+++.+.
T Consensus 240 ~~~~~~ 245 (272)
T PRK13547 240 ADVLTP 245 (272)
T ss_pred HHHcCH
Confidence 777654
No 217
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-36 Score=303.79 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=161.5
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-C----Ceeeee--cc-----------ccCcceeEe
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-P----DSVEDS--DV-----------EIPEFNVSY 417 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-p----~~G~i~--~~-----------~~~~~~i~y 417 (605)
.++++++||++..| |++||+|++||||||+.+.|.|+++ | .+|++. +. .+....|+|
T Consensus 18 v~av~~vs~~i~~G-----E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 18 VKAVDGVSFELKKG-----EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred EEEEeceeEEEcCC-----cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 35789999999998 7999999999999999999999998 4 346653 22 122346999
Q ss_pred ecCcCCCC--CcCcHHHHHHhhhccC--C----CCHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPK--FQSTVRHLLHQKIRDS--Y----THPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~--~~~tv~~~~~~~~~~~--~----~~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++... .-.|+.+-+...+... . .....+.++|+.++|.+ .++.+|++|||||+|||+||.||+.+|
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCC
Confidence 99996432 3346654433222211 1 11346788999999984 789999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|||.||||++||+..+.+++++|+++.++.|.|+|+||||+..+.++||||+||..+..+ ..|+.++++...
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV--E~g~~~~i~~~P 245 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV--EEGPVEEIFKNP 245 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE--EeCCHHHHhcCC
Confidence 9999999999999999999999999998888999999999999999999999999865543 458888887754
No 218
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-35 Score=302.28 Aligned_cols=203 Identities=20% Similarity=0.306 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cC----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IP---------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~---------- 411 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.. ..
T Consensus 10 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR02323 10 SKSYGGG-KGCRDVSFDLYPG-----EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRL 83 (253)
T ss_pred EEEeCCc-eEeecceEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHh
Confidence 6777653 3688999998888 78999999999999999999999999999875 222 11
Q ss_pred -cceeEeecCcCC--CCCcCcHHHHHHhhh--cc--CC-CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHH
Q 040300 412 -EFNVSYKPQKIS--PKFQSTVRHLLHQKI--RD--SY-THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 412 -~~~i~y~~q~~~--~~~~~tv~~~~~~~~--~~--~~-~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...++|++|+.. ..+..++.+++.... .. .. .....+.++++.+++. ...++.+.+|||||+|||+|||||
T Consensus 84 ~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral 163 (253)
T TIGR02323 84 MRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNL 163 (253)
T ss_pred hhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHH
Confidence 124899999853 223346666543211 00 01 1124567889999997 588999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.++|+++..+.+.|+|+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 164 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i--~~~~~~~~~~~ 238 (253)
T TIGR02323 164 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV--VESGLTDQVLD 238 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEECCHHHHhc
Confidence 9999999999999999999999999999998665689999999999999999999999986543 34466666654
No 219
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-36 Score=303.38 Aligned_cols=198 Identities=26% Similarity=0.361 Sum_probs=144.3
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH-H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR-I 159 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~-~ 159 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+...... .
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~~~~~~~~~~ 72 (235)
T cd03261 5 GLTKSFGGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI-----------DGEDISGLSEAEL 72 (235)
T ss_pred EEEEEECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEccccChhhH
Confidence 456677643 3466666 46899999999999999999999999999999999852 22211110000 0
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
..-.....+.+|.....+. .+...+.. . .......+++.++++.++|.+..++++.+|||||+|||+||+||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 0000011222332211111 11111110 0 111223456788999999999899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+.++..+.++|+++.++ ++|||+||||++++..+||++++|..
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~ 212 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD 212 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999874 89999999999999999999999964
No 220
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=307.25 Aligned_cols=202 Identities=20% Similarity=0.298 Sum_probs=160.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+.
T Consensus 13 ~~~~~~~~~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 13 TVTWRNGHTALRDASFTVPGG-----SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred EEEecCCcEEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecccc
Confidence 677753334789999999888 78999999999999999999999999999875 22211 23599999986
Q ss_pred CCC--CcCcHHHHHHhhhc------cCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 423 SPK--FQSTVRHLLHQKIR------DSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 423 ~~~--~~~tv~~~~~~~~~------~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
... +..++.+++..... ... .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 432 23456665432100 000 11234667899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||++||+.++..+.++|+++.. .|.|||+||||++++..+||++++++|+. ...++++++++
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~~~~~d~v~~~~G~i---~~~g~~~~~~~ 230 (272)
T PRK15056 168 EPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTVMVKGTV---LASGPTETTFT 230 (272)
T ss_pred CCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEECCEE---EeecCHHhccC
Confidence 99999999999999999999864 48999999999999999999998885432 34577777654
No 221
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=288.44 Aligned_cols=202 Identities=20% Similarity=0.287 Sum_probs=162.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe-----eeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS-----VEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~-----G~i~--~~~~~---------~ 412 (605)
.+.|++. .+++++++++..+ +++|++||+|||||||||++..+..... |++. +..+. +
T Consensus 14 ~~yYg~~-~aL~~i~l~i~~~-----~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lR 87 (253)
T COG1117 14 NLYYGDK-HALKDINLDIPKN-----KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELR 87 (253)
T ss_pred eEEECch-hhhccCceeccCC-----ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHH
Confidence 7778753 4789999999888 6899999999999999999999987664 6654 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|+++|.+.+ |.+|+++++....+.. ..+ .+.+++.|+.-.|+ +.+++++..||||||||+.|||||+.
T Consensus 88 r~vGMVFQkPnP-Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 88 RRVGMVFQKPNP-FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred HHheeeccCCCC-CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc
Confidence 469999999876 5699999986533221 111 23456666666665 46788999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|+|||||||||+|||.+...+.++|.+|. ..-|||+|||+|..|.+++|+..+|..+.. ...++.+.+++..
T Consensus 167 ~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTHnmqQAaRvSD~taFf~~G~L--vE~g~T~~iF~~P 239 (253)
T COG1117 167 KPEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTHNMQQAARVSDYTAFFYLGEL--VEFGPTDKIFTNP 239 (253)
T ss_pred CCcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeCCHHHHHHHhHhhhhhcccEE--EEEcCHHhhhcCc
Confidence 999999999999999999999999999985 378999999999999999999999874443 3457777777753
No 222
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=299.46 Aligned_cols=203 Identities=28% Similarity=0.373 Sum_probs=166.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
.+.|+. . .+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~-~-~l~~is~~i~~G-----e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 7 SKDWKE-F-KLKNVSLEVERG-----DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred EEEeCC-c-eeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 566764 2 588999988888 78999999999999999999999999999875 2221 12369999998
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++....... .. ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||||++
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 76555679988875321111 11 123467789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.++..++++|+++..+.+.|+|++|||+.++..+|||+++|+.+.. ...++++++.+.
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 220 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL--IQVGKPEEVFKK 220 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEecCHHHHHhC
Confidence 9999999999999998665589999999999999999999999986543 345667766554
No 223
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-35 Score=295.99 Aligned_cols=190 Identities=24% Similarity=0.310 Sum_probs=157.0
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
++.|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ..
T Consensus 8 ~~~~~~~~~~~~il~~vs~~i~~G-----~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (220)
T TIGR02982 8 NHYYGHGSLRKQVLFDINLEINPG-----EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRR 82 (220)
T ss_pred EEEccCCCcceeEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHh
Confidence 5566531 34688999988888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
.++|++|+.......|+.+++..... .... ....+.++++.+++.+..++.+.+|||||+||++|||||+++|++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i 162 (220)
T TIGR02982 83 NIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL 162 (220)
T ss_pred heEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 59999999766555799987653211 1111 123567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||+|||+.++..+.++|+++.++.+.|+|++|||++.+ .+||++++|+++
T Consensus 163 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g 217 (220)
T TIGR02982 163 VLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDG 217 (220)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECC
Confidence 9999999999999999999999998765689999999999865 689999999854
No 224
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=301.75 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=161.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +..+. .
T Consensus 19 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 92 (258)
T PRK14268 19 NLWYGE-KQALKNVSMQIPKN-----SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 (258)
T ss_pred EEEeCC-eeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHh
Confidence 667765 34689999999888 78999999999999999999999985 789875 22110 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.+++ .+.+++++.+|||||+|||+|||||+.
T Consensus 93 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 93 KNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhEEEEecCCccC-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 3599999986543 47999887532111 1111 1345678898888 356789999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|++|||||||++||+.++..++++|+++. + +.|||+||||++++..+|||+++|+++.. ...+++++++.
T Consensus 172 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 242 (258)
T PRK14268 172 KPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGEL--IEFGQTRQIFH 242 (258)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhc
Confidence 999999999999999999999999999984 3 79999999999999999999999986543 34577777754
No 225
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-36 Score=299.01 Aligned_cols=191 Identities=27% Similarity=0.367 Sum_probs=142.3
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 5 ~l~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~~~~~~~--~ 70 (213)
T cd03259 5 GLSKTYGSV-RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI-----------DGRDVTGVPP--E 70 (213)
T ss_pred eeEEEeCCe-eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CCEEcCcCch--h
Confidence 456667542 3455565 45899999999999999999999999999999999852 1211111000 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-...+.+|.....+. .++.+. .......+++.++++.++|.+..++++.+|||||+||++||+||
T Consensus 71 --~~~i~~v~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 71 --RRNIGMVFQDYALFPH---LTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred --hccEEEEcCchhhccC---CcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 0001111221111110 011111 11123345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|+.
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 206 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE 206 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999764 89999999999999999999999964
No 226
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=304.89 Aligned_cols=204 Identities=23% Similarity=0.307 Sum_probs=164.4
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 14 ~~~~~~~~~~~l~~isl~i~~G-----e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 88 (269)
T PRK13648 14 SFQYQSDASFTLKDVSFNIPKG-----QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIV 88 (269)
T ss_pred EEEcCCCCCcceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEE
Confidence 6777643 23688999999888 78999999999999999999999999999875 22221 1358999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..++.+++...... ... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||
T Consensus 89 ~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (269)
T PRK13648 89 FQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168 (269)
T ss_pred EeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99864 33456777765432111 111 12346688999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+.++..+.++|+++.++.|.|||+||||++++.. |||+++|+++.. ...++++++.+.
T Consensus 169 Pt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i--~~~g~~~~~~~~ 232 (269)
T PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTV--YKEGTPTEIFDH 232 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEE--EEecCHHHHhcC
Confidence 9999999999999999999866558999999999999986 999999986543 345777777664
No 227
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=300.57 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=160.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.. |++|++. +.... .
T Consensus 13 ~~~~~~~-~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 13 SFFYGDF-QALHDISLEFEQN-----QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred EEEECCe-eeecceeEEEeCC-----CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 7778653 4789999999888 7899999999999999999999975 5889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCC-C---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSY-T---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~-~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... ... . ....+.++++.+++. ...++++.+|||||+|||+|||||+
T Consensus 87 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 87 RRVGMVFQKPNPF-PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred hcEEEEecCCCCC-cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999986543 4699988753211 111 1 123466788888884 3568899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++ .+ +.|||+||||++++..+|||+++|+.+.. ...++++++.+.
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 238 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHEL-KA-RYTIIIVTHNMQQAARVSDVTAFFYMGKL--IEVGPTEQIFTR 238 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hc-CCeEEEEEecHHHHHHhCCEEEEEECCEE--EEeCCHHHHHcC
Confidence 999999999999999999999999999998 33 78999999999999999999999986543 345777777553
No 228
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-35 Score=294.44 Aligned_cols=188 Identities=25% Similarity=0.306 Sum_probs=156.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|++|..
T Consensus 18 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 18 AFSRNEE-PVFGPLDFHVDAG-----EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91 (214)
T ss_pred EEecCCc-eeeecceEEECCC-----CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCc
Confidence 6777653 4688999998888 78999999999999999999999999999875 22211 22489999986
Q ss_pred CCCCcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 423 SPKFQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
......|+.+++...... .......+.++++.+++.+..++++.+|||||||||+|||+|+.+|++|||||||++||+.
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171 (214)
T ss_pred ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 554456898876432111 1122345678899999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
++..+.++|+++.+ .+.|+|++|||++++..+|||+++++.
T Consensus 172 ~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 172 GITLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999865 589999999999999999999999863
No 229
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.6e-35 Score=298.44 Aligned_cols=190 Identities=24% Similarity=0.291 Sum_probs=154.9
Q ss_pred eecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec-C
Q 040300 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP-Q 420 (605)
Q Consensus 350 ~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~-q 420 (605)
..|+.. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|++ |
T Consensus 29 ~~~~~~-~il~~vs~~i~~G-----e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~ 102 (236)
T cd03267 29 RKYREV-EALKGISFTIEKG-----EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102 (236)
T ss_pred cccCCe-eeeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCC
Confidence 345543 3689999999888 78999999999999999999999999999875 21110 23589997 4
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
........|+.+++..... ..... ...+.++++.+++.+..++++.+|||||+||++||+||+.+|++|||||||+
T Consensus 103 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 103 KTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred ccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 4444456789887643211 11111 2345678899999998999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+||+.++..+.++|+++.++.+.|||+||||++++..+||+++++.++.
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999876568999999999999999999999998643
No 230
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.8e-35 Score=301.24 Aligned_cols=203 Identities=17% Similarity=0.218 Sum_probs=162.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC----Ceeeee--cccc-----CcceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DSVEDS--DVEI-----PEFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p----~~G~i~--~~~~-----~~~~i~y 417 (605)
+++| + ...+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +..+ ....++|
T Consensus 11 ~~~~-~-~~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~ 83 (254)
T PRK10418 11 ALQA-A-QPLVHGVSLTLQRG-----RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIAT 83 (254)
T ss_pred EEEe-c-cceecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEE
Confidence 6667 2 24688999999888 78999999999999999999999999 899875 2221 1235999
Q ss_pred ecCcCCC--CCcCcHHHHHHhh--hccCCCCHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 418 KPQKISP--KFQSTVRHLLHQK--IRDSYTHPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 418 ~~q~~~~--~~~~tv~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
++|+... ....|+.+++... ..........+.++++.+++.+ .+++.+.+|||||+|||+|||||+.+|++||
T Consensus 84 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 163 (254)
T PRK10418 84 IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 (254)
T ss_pred EecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998642 2234666654321 1111112356788999999986 5799999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||++||+.++..+.++|+++.++.|.|||++|||++++..+|||+++++++.. ...++++++...
T Consensus 164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 231 (254)
T PRK10418 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI--VEQGDVETLFNA 231 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE--EEecCHHHHhhC
Confidence 99999999999999999999998765689999999999999999999999986543 355777776543
No 231
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=6.2e-36 Score=296.51 Aligned_cols=199 Identities=25% Similarity=0.306 Sum_probs=144.1
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH-H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR-I 159 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~-~ 159 (605)
+++++|+.....+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+...... .
T Consensus 5 ~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~i~~~~~~~~ 73 (214)
T cd03292 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV-----------NGQDVSDLRGRAI 73 (214)
T ss_pred EEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEcccCCHHHH
Confidence 45566743223455555 45799999999999999999999999999999999852 22211110000 0
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHcc
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQ 233 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~ 233 (605)
....-..++.+|.....+. .+..++... .......+++.++++.+||++.+++.+.+|||||+||++||+||+.
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 0000012222332221111 111111100 1112234567889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 234 NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 234 ~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|+++||||||++||+.++..+.+.|+++.+++.|||+||||++++..+||++++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 211 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999976789999999999999999999999964
No 232
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=300.91 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=162.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +..+. .
T Consensus 14 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (254)
T PRK14273 14 NLFYTDF-KALNNINIKILKN-----SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87 (254)
T ss_pred EEEeCCc-eeecceeeEEcCC-----CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHh
Confidence 6777653 4689999999888 789999999999999999999999974 78875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 88 ~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 88 RKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred hceEEEeeccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 3599999986543 58999987532111 1111 2346677888887 45678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..++++|+++. + +.|+|++|||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 239 (254)
T PRK14273 167 IEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCI--EEESSTDELFFN 239 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 345778877643
No 233
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=304.92 Aligned_cols=205 Identities=21% Similarity=0.317 Sum_probs=166.7
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 11 ~~~~~~~~~~~~l~~v~l~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (277)
T PRK13642 11 VFKYEKESDVNQLNGVSFSITKG-----EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGM 85 (277)
T ss_pred EEEcCCCCcCeeeeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEE
Confidence 6777632 23688999999888 78999999999999999999999999999875 22221 235899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+.. ..+..|+.+++...... .... ...+.++++.+++.++.++++.+|||||+|||+|||||+.+|++||||
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD 165 (277)
T PRK13642 86 VFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD 165 (277)
T ss_pred EEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999863 34567999887532211 1111 134678899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||++||+.++..++++|+++.++.|.|||+||||++++. .|||+++|+.+.. ...+++++++...
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~~~~~~ 231 (277)
T PRK13642 166 ESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEI--IKEAAPSELFATS 231 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEeCCHHHHhcCH
Confidence 9999999999999999999987655899999999999997 5999999986543 3557888876643
No 234
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=296.10 Aligned_cols=211 Identities=24% Similarity=0.400 Sum_probs=149.9
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Ch-----hhhhhhhccchhh
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DW-----QEILTYFRGSELQ 153 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~-----~~~~~~~~g~~l~ 153 (605)
++++++||+. -.+++++ .+++||++||||||||||||++|+|+|.++|+.|++.... +. .++...--...+|
T Consensus 8 ~~l~k~FGGl-~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 8 RGLSKRFGGL-TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred ccceeecCCE-EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecc
Confidence 4567788875 2466666 4689999999999999999999999999999999985211 00 0000000001112
Q ss_pred h--hHHHH-HHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 154 N--YFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 154 ~--~~~~~-~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
. .|..+ +-+++..+...+.- ....+. .-...-...+.++++.++|+.+||.+.++++.++||+|||+|+.||||
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~--~~~~l~-~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLG--LSGLLG-RPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhh--hhhhhc-cccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 1 11110 11222221110000 000000 000000123456889999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe-Ccccc
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY-GKPGA 295 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~-g~~~~ 295 (605)
|+.+|++|+||||.+||.+....++.+.|+++.+. |.||++||||+.++..+||||+||. |+..+
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999974 7999999999999999999999994 44333
No 235
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-36 Score=298.60 Aligned_cols=182 Identities=28% Similarity=0.330 Sum_probs=159.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc---------cc--CcceeEeecCcCCCCCcCcHHHHHHhhhccC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV---------EI--PEFNVSYKPQKISPKFQSTVRHLLHQKIRDS 441 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~---------~~--~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~ 441 (605)
-++||.|++|||||||+++|+|+.+|++|.|. +. .. .+++|||++|+...+..+||+.|+......
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~- 103 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK- 103 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc-
Confidence 48999999999999999999999999999874 11 11 245799999998877788999988644322
Q ss_pred CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 442 YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
......+++...|||+++++++|.+|||||||||||+|||...|++||||||.|.||..-+.+++-.|+++.++.+..|
T Consensus 104 -~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPI 182 (352)
T COG4148 104 -SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182 (352)
T ss_pred -cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCE
Confidence 2344567899999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 522 FVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 522 ivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|||.++++.++||+|++|+++.. .+.|..++++..
T Consensus 183 lYVSHS~~Ev~RLAd~vV~le~GkV--~A~g~~e~v~~~ 219 (352)
T COG4148 183 LYVSHSLDEVLRLADRVVVLENGKV--KASGPLEEVWGS 219 (352)
T ss_pred EEEecCHHHHHhhhheEEEecCCeE--EecCcHHHHhcC
Confidence 9999999999999999999997553 466888888775
No 236
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-36 Score=319.79 Aligned_cols=199 Identities=26% Similarity=0.390 Sum_probs=149.2
Q ss_pred eEEEecCCcccCCCceEEe-CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRY-GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~y-g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.|| +++| +. ...|++++ .+.+||+++|+||||||||||+++|+|+++|+.|+|.
T Consensus 3 ~l~i~~l--------~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~----------- 62 (356)
T PRK11650 3 GLKLQAV--------RKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW----------- 62 (356)
T ss_pred EEEEEeE--------EEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-----------
Confidence 4666664 4566 43 23455565 4579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
+.|.++.+... .....++.+|.....|. .+..++... ........++.++++.++|++++++++.+||||
T Consensus 63 ~~g~~i~~~~~----~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgG 138 (356)
T PRK11650 63 IGGRVVNELEP----ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGG 138 (356)
T ss_pred ECCEECCCCCH----HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHH
Confidence 22222211100 00112223333222221 111122111 112233567889999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+|||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 139 q~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 139 QRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999875 89999999999999999999999964
No 237
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=302.43 Aligned_cols=203 Identities=18% Similarity=0.304 Sum_probs=161.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +..+. .
T Consensus 20 ~~~~~~~-~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 20 TISYGTF-EAVKNVFCDIPRG-----KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred EEEECCE-EEEcceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 7778753 4689999999888 7899999999999999999999987 5889875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC--HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH--PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~--~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|+||+... +..|+.+++...... .+.. ...+.++++.+++ .+..++++.+|||||||||+|||||+.+
T Consensus 94 ~~i~~v~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 172 (269)
T PRK14259 94 RRIGMVFQQPNP-FPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172 (269)
T ss_pred hceEEEccCCcc-chhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 359999998754 345999987532111 1111 2345667888876 3567899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC---------CcceeeecCChhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG---------QPSVDCVANAPQS 556 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g---------~~~~~~~~~~p~~ 556 (605)
|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++|++ ..+.....++|.+
T Consensus 173 p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 173 PEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 99999999999999999999999999984 3 68999999999999999999999984 2233345677877
Q ss_pred hhcc
Q 040300 557 LLTG 560 (605)
Q Consensus 557 ~~~~ 560 (605)
+++.
T Consensus 251 ~~~~ 254 (269)
T PRK14259 251 IFNS 254 (269)
T ss_pred HHhC
Confidence 7653
No 238
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=301.24 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=162.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +..+. .
T Consensus 11 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 11 RVYYGS-NHVIKGVDLKIPQN-----GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEEeCC-eeeeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 677765 34689999999888 789999999999999999999999874 89875 22221 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCC-CC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHH
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSY-TH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~-~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
..++|++|+.......|+.+++..... ... .. ...+.++++.+++. ...++++.+|||||+|||+|||||
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 359999998765555799988753211 111 11 13456788888874 457899999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.+|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+|||+++++++.. ...+++++++..
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 238 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSPAQAARVSDYVAFLYLGKL--IEVGPTRKVFEN 238 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 99999999999999999999999999999984 3 68999999999999999999999986543 345777777543
No 239
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1e-35 Score=294.80 Aligned_cols=196 Identities=24% Similarity=0.341 Sum_probs=144.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhh--hHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQN--YFTR 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~--~~~~ 158 (605)
+++++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+.. ....
T Consensus 5 ~l~~~~~~~-~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 72 (213)
T cd03262 5 NLHKSFGDF-HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII-----------DGLKLTDDKKNIN 72 (213)
T ss_pred EEEEEECCe-EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEECCccchhHH
Confidence 456677643 3455665 45899999999999999999999999999999999852 2222110 0000
Q ss_pred HHHHHHHHhhcccccccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
... -..++.+|.....+. .+..++.. .......++++.++++.+|+.+.+++.+.+|||||+||++||+||
T Consensus 73 ~~~--~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 73 ELR--QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHH--hcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 000 112223333222111 11111110 011122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.+.|+++.+.+.|||++|||++++..+||++++|..
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~ 210 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDD 210 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999987789999999999999999999999964
No 240
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.1e-35 Score=295.50 Aligned_cols=187 Identities=26% Similarity=0.377 Sum_probs=155.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 14 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 87 (225)
T PRK10247 14 GYLAGDA-KILNNISFSLRAG-----EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 (225)
T ss_pred EEeeCCc-eeeeccEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEe
Confidence 6777653 4689999999888 78999999999999999999999999999875 21111 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhh--ccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 420 QKISPKFQSTVRHLLHQKI--RDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
|+... +..|+.+++.... .........+.++++.+++. ...++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 88 q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 88 QTPTL-FGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ccccc-ccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 98654 4569998874321 11111234567899999996 57899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
+||+.++..+.++|+++.++.|.|||++|||++++. .|||+++|+.
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~ 212 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQP 212 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEec
Confidence 999999999999999987666899999999999996 5999999963
No 241
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-35 Score=303.77 Aligned_cols=197 Identities=23% Similarity=0.378 Sum_probs=160.5
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS 423 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~ 423 (605)
...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|+..
T Consensus 25 ~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 99 (268)
T PRK10419 25 QTVLNNVSLSLKSG-----ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSI 99 (268)
T ss_pred eeeEeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChh
Confidence 34688999999888 78999999999999999999999999999875 22111 235999999863
Q ss_pred --CCCcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 424 --PKFQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 424 --~~~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
.....|+.+++...... ... ....+.++++.+++. ...++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 100 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt 179 (268)
T PRK10419 100 SAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179 (268)
T ss_pred hccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22346888775321111 111 123567899999997 6889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++||+.++..+.++|+++.++.+.|+|++|||++++..+|||+++|+++.. ...+++.++.+
T Consensus 180 ~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i--~~~g~~~~~~~ 241 (268)
T PRK10419 180 SNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI--VETQPVGDKLT 241 (268)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE--eeeCChhhccC
Confidence 999999999999999998765689999999999999999999999986543 35577777654
No 242
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-36 Score=297.42 Aligned_cols=195 Identities=24% Similarity=0.333 Sum_probs=144.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+...... .
T Consensus 5 ~~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~-~ 71 (220)
T cd03265 5 NLVKKYGDF-EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV-----------AGHDVVREPRE-V 71 (220)
T ss_pred EEEEEECCE-EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEecCcChHH-H
Confidence 456677643 3456666 46899999999999999999999999999999999852 12111100000 0
Q ss_pred HHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
....++.+|.....+. .+...+. .. .......+++.++++.++|++.+++++.+|||||+||++||+||+.+
T Consensus 72 --~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 72 --RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred --hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0011222232211111 1111111 00 11123456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||||++||+..+..+.+.|+++.++ +.|||+||||++++..+||++++|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999876 89999999999999999999999964
No 243
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-36 Score=300.42 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=144.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH-H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR-I 159 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~-~ 159 (605)
+++++|+.....+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|.++...... .
T Consensus 5 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~ 73 (241)
T cd03256 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI-----------DGTDINKLKGKAL 73 (241)
T ss_pred eEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE-----------CCEeccccCHhHH
Confidence 45667764223566666 46899999999999999999999999999999998742 22211110000 0
Q ss_pred HHHHHHHhhcccccccchh-hhhchhh-----------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVG-----------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~-----------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
....-..++.+|.....+. .+..++. ... ......+++.++++.++|.+.+++.+.+|||||+||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 0000011222222111111 1111110 000 1122345678899999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||+||+.+|++|||||||++||+..+..+.++|+++.++ |.|||+||||++++..+||++++|+.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999764 89999999999999999999999964
No 244
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.2e-35 Score=298.42 Aligned_cols=193 Identities=25% Similarity=0.365 Sum_probs=158.3
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCCcC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKFQS 428 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~ 428 (605)
.+++++|++.+| |+++|+||||||||||+++|+|+++ .+|++. +..+. ...++|+||+....+..
T Consensus 11 ~l~~vsl~i~~G-----ei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 84 (248)
T PRK03695 11 RLGPLSAEVRAG-----EILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM 84 (248)
T ss_pred eecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCc
Confidence 578899999888 7899999999999999999999985 489875 22221 12489999987666678
Q ss_pred cHHHHHHhhhccCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCC
Q 040300 429 TVRHLLHQKIRDSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK-------PADIYLIDEPSAYL 498 (605)
Q Consensus 429 tv~~~~~~~~~~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~-------~p~lllLDEPt~~L 498 (605)
|+.+++......... ....+.++++.+++.+..++++.+|||||+|||+||+||+. +|++|||||||++|
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~L 164 (248)
T PRK03695 85 PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164 (248)
T ss_pred cHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccC
Confidence 999887532111111 12356789999999999999999999999999999999997 67999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+.++..+.++|+++.+ .+.|||++|||++++..+||++++|+++.. ...++++++..
T Consensus 165 D~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 222 (248)
T PRK03695 165 DVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKL--LASGRRDEVLT 222 (248)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHhC
Confidence 99999999999999864 489999999999999999999999986543 34567777654
No 245
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.3e-35 Score=295.49 Aligned_cols=203 Identities=25% Similarity=0.357 Sum_probs=166.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
.+.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+
T Consensus 7 ~~~~~~~-~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 7 SKRFGSF-QALDDVNLEVPTG-----SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEECCe-eeeeeEEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 6677653 4689999998888 78999999999999999999999999999875 22211 2359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++.+.+|||||+||++|||||+++|+++||||||++
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 7654456998887532211 111 123467889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.++|+++..+.+.|+|++||+++++..+|||+++++++.. ...++++++..
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~~ 220 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI--EQIGSPDEVYD 220 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE--EEecCHHHHHc
Confidence 9999999999999998654589999999999999999999999986553 34567777654
No 246
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=300.11 Aligned_cols=203 Identities=17% Similarity=0.293 Sum_probs=161.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +.... .
T Consensus 11 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~ 84 (258)
T PRK14241 11 NIYYGSF-HAVEDVNLNIEPR-----SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84 (258)
T ss_pred EEEECCE-eeeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHh
Confidence 6777653 4689999998888 78999999999999999999999975 689875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCCC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYTH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.......|+.+++..... ..... ...+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 359999998765555799998753211 11111 23566788889884 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC----CcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG----QPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g----~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||+|||+.++..+.++|+++. + +.|||+||||++++..+|||+++|++ ..+.....++++++++
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999962 1122245577777654
No 247
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=8.4e-36 Score=300.08 Aligned_cols=198 Identities=27% Similarity=0.450 Sum_probs=144.1
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..+....
T Consensus 4 ~~l~~~~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~ 71 (236)
T cd03219 4 RGLTKRFGGL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF-----------DGEDITGLPPHE 71 (236)
T ss_pred eeeEEEECCE-EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE-----------CCEECCCCCHHH
Confidence 3456677642 3566666 46899999999999999999999999999999998742 111111100000
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhh---hc------------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQ---VL------------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQ 223 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~l------------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~Q 223 (605)
.. ....++.+|.....+. .+...+.. .. .......++.++++.+||++.+++++.+|||||+|
T Consensus 72 ~~-~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 72 IA-RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred HH-hcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 00 0001112222111111 11111100 00 01223456788999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++||+||+.+|+++||||||++||+.++..+.++|+++.+.|+|||+||||++++..+||++++|+.
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999987789999999999999999999999964
No 248
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.3e-35 Score=290.06 Aligned_cols=184 Identities=20% Similarity=0.219 Sum_probs=156.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 7 TCERDGR-ALFSGLSFTLAAG-----EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred EEEeCCc-eeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 6667653 4688999999888 78999999999999999999999999999875 21111 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
+....+..|+++++..... ......+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA--DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred ccccCCCcCHHHHHHhhcc--cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 8766556899998753211 12345678899999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
.++..+.++|+++.. .|.|+|+||||......+++|++++
T Consensus 159 ~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 159 AGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999854 4899999999999888899999886
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=331.46 Aligned_cols=202 Identities=18% Similarity=0.237 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 12 ~~~~~~~-~il~~vs~~i~~G-----e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 12 GKSFGPV-HALKSVNLTVYPG-----EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred EEEcCCe-EEeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 6778653 4689999999888 78999999999999999999999999999875 22221 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc-----cCC---C---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIR-----DSY---T---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~-----~~~---~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+.......||.+++..... ... . ....+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 998765556799988753211 000 0 12346788999999988999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|||||||+|||+.++..++++|+++.+ .|+|||+||||++++..+|||+++++++.. ...++++++..
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 234 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSS--VCSGMVSDVSN 234 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--eeecchhhCCH
Confidence 9999999999999999999999999865 489999999999999999999999986543 34567776644
No 250
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2e-35 Score=295.51 Aligned_cols=187 Identities=24% Similarity=0.277 Sum_probs=150.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +....+.+..+.....+..
T Consensus 29 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 29 KGEVGEF-WALKDVSFEVPRG-----ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT---VRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhcCCe-EEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEchhhcccccCCCCC
Confidence 5677663 4789999999888 68999999999999999999999999999875 1111121111222233457
Q ss_pred cHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 429 TVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 429 tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
|+.+++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||++||+.++.
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 89888753211 11111 234567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
.+.+.|+++.++ +.|||+||||++++..+|||+++++++.
T Consensus 180 ~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 219 (224)
T cd03220 180 KCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGK 219 (224)
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999998654 8999999999999999999999998654
No 251
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=288.38 Aligned_cols=212 Identities=25% Similarity=0.329 Sum_probs=157.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ .|....-.|.+++ .+.+||+++|||+||||||||||+|+|+..|+.|++..... + +...
T Consensus 3 ~i~~~nl~k--------~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~--~-i~~~ 71 (258)
T COG3638 3 MIEVKNLSK--------TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV--Q-ITKL 71 (258)
T ss_pred eEEEeeeee--------ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEeccc--c-hhcc
Confidence 577777654 6733334566665 45799999999999999999999999999999999853211 0 0011
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhc-----------hhhhhc--CchHHHHHHHHHHhhcCCchhhccc
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQG-----------NVGQVL--DQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~-----------~v~~~l--~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
.+.++..+ .....+..|....+|+. +.. ++..++ -...++..+-++|+++||.+..-++
T Consensus 72 ~~k~lr~~-------r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr 144 (258)
T COG3638 72 KGKELRKL-------RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR 144 (258)
T ss_pred chHHHHHH-------HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Confidence 22222211 11122333443433332 111 111122 2355677889999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.++|||||+|||+|||||+++|+++|.|||+++|||.....+++.|+++.+ +|.|||+.-|+++.+..+||||+-|..+
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G 224 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCC
Confidence 999999999999999999999999999999999999999999999999986 4999999999999999999999999765
Q ss_pred cccccc
Q 040300 293 PGAYGV 298 (605)
Q Consensus 293 ~~~~g~ 298 (605)
...|..
T Consensus 225 ~ivfDg 230 (258)
T COG3638 225 RIVFDG 230 (258)
T ss_pred cEEEeC
Confidence 555543
No 252
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=330.71 Aligned_cols=200 Identities=21% Similarity=0.277 Sum_probs=164.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|+
T Consensus 11 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 84 (501)
T PRK10762 11 DKAFPG-VKALSGAALNVYPG-----RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGII 84 (501)
T ss_pred EEEeCC-eEEeeeeeEEEcCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 677765 34789999999888 78999999999999999999999999999875 22211 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc--c--CCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR--D--SYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~--~--~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+|+.......||.+++..... . .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII 164 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998765556799998753211 0 0111 2346788999999998999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||||++||+.++..++++|+++.. .|.|||+||||++++..+|||+++++++.. ...++++++
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i--~~~~~~~~~ 228 (501)
T PRK10762 165 MDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQF--IAEREVADL 228 (501)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EEecCcCcC
Confidence 9999999999999999999999854 589999999999999999999999986443 234555554
No 253
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=300.99 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=160.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. .
T Consensus 26 ~~~~~~-~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~ 99 (267)
T PRK14235 26 SVFYGE-KQALFDVDLDIPEK-----TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99 (267)
T ss_pred EEEECC-EEEEEEEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHh
Confidence 777875 34689999999888 78999999999999999999999975 889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhh--ccCC-C---CHHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHHHH
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKI--RDSY-T---HPQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~--~~~~-~---~~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
..++|++|+.... ..|+.+++.... .... . ....+.++++.+++.+ .+++++.+|||||+|||+|||||
T Consensus 100 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 100 ARVGMVFQKPNPF-PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hceEEEecCCCCC-CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 3589999986543 459998875321 1100 1 1234577899999953 56889999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++++++.. ...+++++++.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 251 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTIVIVTHSMQQAARVSQRTAFFHLGNL--VEVGDTEKMFT 251 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeEEEEEcCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 99999999999999999999999999999984 3 68999999999999999999999986543 34567777654
No 254
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-35 Score=299.81 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=142.3
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH-HHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT-RIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~-~~~ 160 (605)
++++|+.+...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.. ...
T Consensus 7 l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL-----------EGTDITKLRGKKLR 75 (243)
T ss_pred eeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE-----------CCEEhhhCCHHHHH
Confidence 4445651222455555 35799999999999999999999999999999999852 2222111000 000
Q ss_pred HHHHHHhhcccccccchh-hhhchhh-----------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG-----------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~-----------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRva 226 (605)
.-....++.+|.....+. .+..++. ..+ .....++++.++++.++|.+.+++++.+|||||+||++
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 000112222332221111 1111110 000 01233467888999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|..
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 999999999999999999999999999999999999764 89999999999999999999999964
No 255
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.4e-35 Score=288.94 Aligned_cols=169 Identities=25% Similarity=0.344 Sum_probs=140.0
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEeecCcCC-C
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSYKPQKIS-P 424 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y~~q~~~-~ 424 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|+.. .
T Consensus 6 ~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 6 EVLKGLNFAAERG-----EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ceecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 4688999999888 78999999999999999999999999999875 22111 135899999863 3
Q ss_pred CCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
.+..|+.+++..... ..... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 455799988754211 11111 23467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~ 531 (605)
.++..+.++|+++.+ .|.|||+||||++++
T Consensus 161 ~~~~~~~~~l~~~~~-~~~tili~sH~~~~~ 190 (190)
T TIGR01166 161 AGREQMLAILRRLRA-EGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeeccccC
Confidence 999999999999854 489999999998753
No 256
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.3e-35 Score=294.34 Aligned_cols=196 Identities=23% Similarity=0.249 Sum_probs=143.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL- 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~- 160 (605)
++++|......+++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|.++........
T Consensus 7 l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~i~~~~~~~~~ 75 (222)
T PRK10908 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF-----------SGHDITRLKNREVP 75 (222)
T ss_pred eEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEcccCChhHHH
Confidence 4556622223456666 46899999999999999999999999999999999852 2222211100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-.-..++.+|.....+. .++.+.+ .......++.++++.+++.+.+++.+.+|||||+||++||+||
T Consensus 76 ~~~~~i~~~~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMD---RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHHhheEEEecCcccccc---ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 000011222332211111 1121111 1122345677899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++||+.++..+.+.|+++.+++.|||+||||++++..+||++++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999777899999999999999999999999753
No 257
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.7e-35 Score=293.23 Aligned_cols=180 Identities=23% Similarity=0.289 Sum_probs=150.0
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecc------ccC-----------cceeEeec
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV------EIP-----------EFNVSYKP 419 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~------~~~-----------~~~i~y~~ 419 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++... ... ...++|++
T Consensus 22 ~il~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 96 (224)
T TIGR02324 22 PVLKNVSLTVNAG-----ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVS 96 (224)
T ss_pred EEEecceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEe
Confidence 4688999998888 7899999999999999999999999999987511 110 13589999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 420 QKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
|+.......|+.+++...... ... ....+.++++.+++.+ ..++++.+|||||+|||+|||||+.+|++||||||
T Consensus 97 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 176 (224)
T TIGR02324 97 QFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEP 176 (224)
T ss_pred cccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 997666667998876532111 111 1245677899999986 46889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
|++||+.++..+.++|+++.. .|.|+|+||||.+++..+|||++.+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 177 TASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence 999999999999999999854 58999999999999999999998763
No 258
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=305.64 Aligned_cols=203 Identities=27% Similarity=0.320 Sum_probs=146.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|+.+ +|+.....+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|+|..
T Consensus 4 ~l~~~~l~~--------~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~----------- 64 (274)
T PRK13647 4 IIEVEDLHF--------RYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV----------- 64 (274)
T ss_pred eEEEEEEEE--------EeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE-----------
Confidence 577777654 5532222455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccc-cch-hhhhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVD-HIP-KAVQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~-~~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
.|..+.......... ...+.+|... .++ ..+..++.. .+.....++++.++++.+||.+.+++.+.+||||
T Consensus 65 ~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG 142 (274)
T PRK13647 65 MGREVNAENEKWVRS--KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYG 142 (274)
T ss_pred CCEECCCCCHHHHHh--hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHH
Confidence 222111100000000 1111122110 000 011111110 0112233467889999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||++||+||+.+|++|||||||++||+.++.++.++|++++++|.|||++|||++++..+||+|++|+.+
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999877999999999999999999999999754
No 259
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=299.84 Aligned_cols=200 Identities=20% Similarity=0.270 Sum_probs=161.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~-----~----~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +... . .
T Consensus 20 ~~~~~~~-~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 20 NFYYGKF-HALKNINLDIAKN-----QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEeCCe-EEeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 7778753 4689999999888 7899999999999999999999987 4789875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc--CCCC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD--SYTH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~--~~~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+.+++...... .... ...+.++++.+++. +..++.+.+|||||+|||+|||||+
T Consensus 94 ~~i~~~~q~~~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 94 AKVGMVFQKPTP-FPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred cceEEEecCCcc-CcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 359999998654 347999887532111 1111 23567788999873 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+|||+++++++.. ...++++++.+
T Consensus 173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 244 (260)
T PRK10744 173 IRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGEL--IEFGNTDTIFT 244 (260)
T ss_pred CCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 34577777654
No 260
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3e-35 Score=292.91 Aligned_cols=186 Identities=25% Similarity=0.421 Sum_probs=151.3
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.+.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|+
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~G-----~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 9 SFSYPNQEIPALDNVSLTIRAG-----EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred EEEcCCCCcccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 5667542 23688999999888 68999999999999999999999999999875 22111 1358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCc-----------CcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV-----------VNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----------~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+.... ..|+.+++..... ......+.++++.+++.+.+++.+ .+|||||+|||+|||||+.+|+
T Consensus 84 ~q~~~~~-~~tv~e~l~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 84 PQDVTLF-YGTLRDNITLGAP--LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred CCCCccc-cchHHHHhhcCCC--CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9987543 4689888743211 123345567888899988777654 6999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|||||||+|||+.++..++++|+++.. +.|||+||||++++ .+|||+++++++.
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~ 215 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGR 215 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCe
Confidence 9999999999999999999999999853 48999999999987 6899999998653
No 261
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=296.40 Aligned_cols=191 Identities=26% Similarity=0.377 Sum_probs=141.1
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++++|+.. ...+++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|++.. .|.++...
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~-- 71 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV-----------DGEPVTGP-- 71 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECccc--
Confidence 345566541 23466666 45899999999999999999999999999999999852 11111100
Q ss_pred HHHHHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 158 RILEDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 158 ~~~~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
....++.+|.....+. .+...+. .. +......+++.++++.++|.+.+++.+.+|||||+||++||+||
T Consensus 72 -----~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al 146 (220)
T cd03293 72 -----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL 146 (220)
T ss_pred -----cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 0001111221111110 0001110 00 11122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+|++|||||||++||+.++..++++|+++.+ .+.|||+||||++++..+||++++|+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999865 48999999999999999999999997
No 262
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=302.08 Aligned_cols=201 Identities=17% Similarity=0.315 Sum_probs=159.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+.+ |++|++. +.... .
T Consensus 28 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 28 SIYYGEK-RAVNDISMDIEKH-----AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEeCCc-eeeeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 7788753 4689999999888 7899999999999999999999865 6899875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+.+++...... .. . ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 102 ~~i~~v~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~ 180 (268)
T PRK14248 102 REIGMVFQKPNP-FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA 180 (268)
T ss_pred ccEEEEecCCcc-CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 359999998654 345899887532111 11 1 123456677888874 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+|||+++|+++.. ...++++++++.
T Consensus 181 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 253 (268)
T PRK14248 181 MKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSIIIVTHNMQQALRVSDRTAFFLNGDL--VEYDQTEQIFTS 253 (268)
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEEeCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 345777776553
No 263
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.4e-35 Score=313.52 Aligned_cols=202 Identities=25% Similarity=0.392 Sum_probs=149.1
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.+|++.||.+ +|+.. ..|++++ .+.+|+++||+||||||||||+++|+|+++|+.|++.
T Consensus 40 ~~i~i~nl~k--------~y~~~-~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~----------- 99 (340)
T PRK13536 40 VAIDLAGVSK--------SYGDK-AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT----------- 99 (340)
T ss_pred eeEEEEEEEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE-----------
Confidence 4688887655 66543 3466666 4579999999999999999999999999999999885
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhh---hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVG---QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~---~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
+.|..+...... . ....++.+|.....+.. +...+. ... .....++++.++++.++|.+.+++++.+||||
T Consensus 100 i~G~~~~~~~~~-~--~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G 176 (340)
T PRK13536 100 VLGVPVPARARL-A--RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGG 176 (340)
T ss_pred ECCEECCcchHH-H--hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHH
Confidence 222221110000 0 00112222221111110 011110 011 11223456778999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||++||+||+++|++|||||||++||+.++.+++++|+++.++|+|||++||+++++..+||+|++|+.+
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999877999999999999999999999999643
No 264
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=296.50 Aligned_cols=201 Identities=18% Similarity=0.286 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--ccccC-------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEIP-------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~~-------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +..+. ...++
T Consensus 9 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 9 NLFYGK-KQALFDINMQIEQN-----KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred EEEECC-EeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 677875 34689999999888 7899999999999999999999984 6899875 22221 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhh--hccCC----CCHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQK--IRDSY----THPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~--~~~~~----~~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
|+||+... +..|+++++... ..... .....+.++++.+++. +..++.+.+|||||+|||+|||||+.+|
T Consensus 83 ~~~q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 83 MVFQQPNV-FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EEecCCcc-ccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99998754 346999887432 11111 1123456789999994 4578899999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|||||||++||+.++..+.+.|+++. + +.|+|+||||++++..+|||+++++++.. ...+++.++.+.
T Consensus 162 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 231 (246)
T PRK14269 162 KLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGEL--IEFGESKEFFEN 231 (246)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999984 3 89999999999999999999999986543 345777776553
No 265
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.4e-35 Score=294.64 Aligned_cols=186 Identities=26% Similarity=0.375 Sum_probs=151.5
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--cceeEeecCcCCCC--CcCcHHHHHHhhhc---cC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--EFNVSYKPQKISPK--FQSTVRHLLHQKIR---DS 441 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--~~~i~y~~q~~~~~--~~~tv~~~~~~~~~---~~ 441 (605)
+.+||+++|+|+||||||||+++|+|+++|++|++. +.... ...++|++|+.... +..|+.+++..... ..
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 456689999999999999999999999999999885 22111 23599999986542 34688887643211 00
Q ss_pred C-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 442 Y-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 442 ~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
+ .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.+
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~- 161 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG- 161 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-
Confidence 0 1123567889999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+.|+|++|||++++..+||++++++|+. ...++++++.+.
T Consensus 162 ~~~tvii~sH~~~~~~~~~d~i~~l~G~i---~~~~~~~~~~~~ 202 (223)
T TIGR03771 162 AGTAILMTTHDLAQAMATCDRVVLLNGRV---IADGTPQQLQDP 202 (223)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEECCEE---EeecCHHHhcCh
Confidence 48999999999999999999999995432 355777777664
No 266
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=326.09 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=164.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 5 ~~~~~~-~~il~~vs~~i~~G-----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 5 SKSFPG-VKALDNVNLKVRPH-----SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred EEEeCC-EEeeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 677765 34789999999888 68999999999999999999999999999875 22221 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc---cCCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR---DSYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~---~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+.......||.+++..... ..... ...+.++++.+++....++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 998765566799998753211 10011 23467889999999889999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
||||+|||+.++..+.++|+++.. .|.|||+||||++++..+|||+++|+++.. ...++++++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~ 221 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQW--IATQPLAGL 221 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EeecChhhC
Confidence 999999999999999999999854 589999999999999999999999986543 244555554
No 267
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-35 Score=289.64 Aligned_cols=185 Identities=22% Similarity=0.230 Sum_probs=154.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|++|..
T Consensus 9 ~~~~~~~-~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (207)
T PRK13539 9 ACVRGGR-VLFSGLSFTLAAG-----EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRN 82 (207)
T ss_pred EEEECCe-EEEeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCC
Confidence 6677653 4688999999888 78999999999999999999999999999875 22211 23589999876
Q ss_pred CCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040300 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~ 502 (605)
...+..|+.+++.............+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.+
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 162 (207)
T PRK13539 83 AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162 (207)
T ss_pred cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 55556799988643211111223457889999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
+..+.++|+++.+ .|.|+|+||||++++.. |+++.++
T Consensus 163 ~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 163 VALFAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeec
Confidence 9999999999855 48999999999999986 9998885
No 268
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-35 Score=296.72 Aligned_cols=201 Identities=19% Similarity=0.306 Sum_probs=160.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC---CCC--Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL---LKP--DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl---~~p--~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+ .+| ++|++. +.... .
T Consensus 10 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 10 NFWYGD-FHALKGISMEIEEK-----SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEECC-EeEEeeeeEEEeCC-----CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 667765 34688999999888 78999999999999999999997 454 489875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC----CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.... ..|+.+++...... ... ....+.++++.+++. +.+++++.+|||||+|||+|||||+
T Consensus 84 ~~i~~v~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14245 84 KNVGMVFQRPNPF-PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA 162 (250)
T ss_pred hheEEEecCCccC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 2599999986543 46998877532111 111 123467788989885 4578899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||+|||+.++..+.++|+++ .+ +.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 163 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~--~~~~~~~~~~~~ 235 (250)
T PRK14245 163 VSPSVLLMDEPASALDPISTAKVEELIHEL-KK-DYTIVIVTHNMQQAARVSDKTAFFYMGEM--VEYDDTKKIFTN 235 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHhhCCEEEEEECCEE--EEECCHHHHhcC
Confidence 999999999999999999999999999998 33 78999999999999999999999986543 355788887654
No 269
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2e-35 Score=308.32 Aligned_cols=192 Identities=25% Similarity=0.406 Sum_probs=143.2
Q ss_pred EeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHH
Q 040300 86 RYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNL 164 (605)
Q Consensus 86 ~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 164 (605)
+|+.. ..|++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+...... .. .
T Consensus 2 ~y~~~-~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~-~~--~ 66 (302)
T TIGR01188 2 VYGDF-KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV-----------AGYDVVREPRK-VR--R 66 (302)
T ss_pred eeCCe-eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEcccCHHH-HH--h
Confidence 45432 3455555 35799999999999999999999999999999999852 22222110000 00 1
Q ss_pred HHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 165 KAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 165 ~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
..++.+|.....+. .+...+. .. ......++++.++++.++|.+.+++++.+|||||+||++||+||+++|++|
T Consensus 67 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred hcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12233333222121 1111111 00 111233457889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||++||+.++..++++|+++.++|.|||++||+++++..+||+|++|+.+
T Consensus 147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999877999999999999999999999999643
No 270
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-35 Score=295.32 Aligned_cols=201 Identities=20% Similarity=0.262 Sum_probs=161.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+.+| ++|++. +..+. .
T Consensus 11 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (251)
T PRK14270 11 NLWYGE-KQALNDINLPIYEN-----KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELR 84 (251)
T ss_pred EEEECC-eeeeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHH
Confidence 667765 34688999998888 78999999999999999999999875 789875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.... ..|+.+++..... ..... ...+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 85 KRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred hheEEEecCCCcC-CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999987543 4799988753211 11111 23456788888874 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||+|||+.++..+.++|+++.+ +.|+|+||||++++..+|||+++++++.. ...++++++.+.
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 236 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDL--IEFNKTEKIFLE 236 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeE--EEeCCHHHHhcC
Confidence 99999999999999999999999999999854 58999999999999999999999986553 355777777653
No 271
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-35 Score=296.50 Aligned_cols=202 Identities=18% Similarity=0.278 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
+++|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++ | ++|++. +..+. .
T Consensus 11 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 11 NVHFGK-NHAVKDVSMDFPEN-----SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEeCC-eeEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 677765 34789999998888 7899999999999999999999986 4 589875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.......|+.+++..... .... ....+.++++.+++. +.+++.+.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 359999999765555799988753211 1111 123467788889985 3567899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++.. +.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 237 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDL--VECGETKKIFTT 237 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 99999999999999999999999999999853 58999999999999999999999986543 345777776554
No 272
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-35 Score=296.04 Aligned_cols=198 Identities=21% Similarity=0.355 Sum_probs=143.8
Q ss_pred ceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+... ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|..+......
T Consensus 7 l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-----------~~g~~~~~~~~~ 75 (233)
T cd03258 7 VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL-----------VDGTDLTLLSGK 75 (233)
T ss_pred ceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-----------ECCEEcccCCHH
Confidence 344564321 3456665 4589999999999999999999999999999999985 222222111000
Q ss_pred HH-HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 IL-EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~-~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.. ...-..++.+|.....+. .+..++.. . .........+.++++.++|.+..++.+.+|||||+||++||+||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 00 000112223333222111 11111110 0 11122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|.+
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 216 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK 216 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999875 89999999999999999999999964
No 273
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=315.09 Aligned_cols=199 Identities=27% Similarity=0.401 Sum_probs=149.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..+++++ .+.+||+++|+||||||||||+++|+|+++|+.|+|..
T Consensus 6 ~l~~~~l--------~~~~~~~-~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~----------- 65 (351)
T PRK11432 6 FVVLKNI--------TKRFGSN-TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI----------- 65 (351)
T ss_pred EEEEEeE--------EEEECCe-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE-----------
Confidence 5666665 4566542 2455555 45899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++..... .....++.+|.....|. .+..++... .......++++++++.++|.+++++++.+|||||
T Consensus 66 ~g~~i~~~~~----~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq 141 (351)
T PRK11432 66 DGEDVTHRSI----QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQ 141 (351)
T ss_pred CCEECCCCCH----HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 2222111000 00111222232222221 111122111 1123345688999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||+|||||+.+|++||||||||+||+..|.++.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 142 ~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 142 QQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999865 89999999999999999999999974
No 274
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.2e-35 Score=293.47 Aligned_cols=195 Identities=25% Similarity=0.390 Sum_probs=143.2
Q ss_pred ceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+... ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|..+......
T Consensus 7 v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-----------~~g~~~~~~~~~ 75 (218)
T cd03266 7 LTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT-----------VDGFDVVKEPAE 75 (218)
T ss_pred EEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE-----------ECCEEcccCHHH
Confidence 455665420 2455555 3579999999999999999999999999999999985 222222110000
Q ss_pred HHHHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 159 ILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
.. -..++.+|.....+. .+...+.. . ........++.++++.+||.+.+++++.+|||||+||++||+||+
T Consensus 76 -~~--~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (218)
T cd03266 76 -AR--RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV 152 (218)
T ss_pred -HH--hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh
Confidence 00 011222332211111 11111110 0 111233567888999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+..+..+.++|+++.+++.|||+||||++++..+||++++|+.
T Consensus 153 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 211 (218)
T cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHR 211 (218)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999977789999999999999999999999964
No 275
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.9e-35 Score=308.68 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=147.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~i~~~~l--------~~~~~~~-~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~----------- 63 (303)
T TIGR01288 4 AIDLVGV--------SKSYGDK-VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV----------- 63 (303)
T ss_pred EEEEEeE--------EEEeCCe-EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------
Confidence 4666654 5566643 3466666 46899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... . ....++.+|.....+. .+...+. .. ......+.++.++++.++|.+.+++++.+|||||
T Consensus 64 ~g~~~~~~~~~-~--~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~ 140 (303)
T TIGR01288 64 LGEPVPSRARL-A--RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGM 140 (303)
T ss_pred CCEECcccHHH-H--hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHH
Confidence 22221110000 0 0111222332211111 1111110 00 1112234567789999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||++||+||+.+|++|||||||++||+.++..+.++|+++.++|.|||++|||++++..+||++++|+.+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999999999999999999643
No 276
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.9e-35 Score=271.50 Aligned_cols=182 Identities=24% Similarity=0.294 Sum_probs=157.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----------cCcceeEeecCcCCC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----------IPEFNVSYKPQKISP 424 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----------~~~~~i~y~~q~~~~ 424 (605)
.+++++|.+..| |.++|+||+|||||||+-+|+|+..|++|++. +.. ....++++++|....
T Consensus 25 IL~~V~L~v~~G-----e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L 99 (228)
T COG4181 25 ILKGVELVVKRG-----ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99 (228)
T ss_pred EeecceEEecCC-----ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence 578999999888 79999999999999999999999999999985 221 123469999999877
Q ss_pred CCcCcHHHHHHhhh--cc--CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKI--RD--SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~--~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
...+|..||+.... .. .......+.++++.+|+..-++.+|.+||||||||||||||++..|++|+.||||.+||.
T Consensus 100 ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~ 179 (228)
T COG4181 100 IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDR 179 (228)
T ss_pred cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcch
Confidence 77889888875321 11 112235678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
.+-..+.+++-.+.++.|.|.++||||..++.+ |+|++-|..+.
T Consensus 180 ~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~ 223 (228)
T COG4181 180 ATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGR 223 (228)
T ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecce
Confidence 999999999999999999999999999999986 99999998544
No 277
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.3e-35 Score=293.25 Aligned_cols=191 Identities=22% Similarity=0.270 Sum_probs=156.3
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--cccc----CcceeE
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEI----PEFNVS 416 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~----~~~~i~ 416 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+|+|+|+++ |++|++. +... ....++
T Consensus 10 ~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~ 84 (226)
T cd03234 10 GLKAKNWNKYARILNDVSLHVESG-----QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84 (226)
T ss_pred eeeeecCccccccccCceEEEcCC-----eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEE
Confidence 6667653 34688999998888 7899999999999999999999999 9999875 2222 134699
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc--c-CC-C---CHHHHHH-HHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR--D-SY-T---HPQFVSD-VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~--~-~~-~---~~~~~~~-~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|++|+.......|+.+++..... . .. . ....+.+ .++.+++....++.+.+|||||+|||+|||||+.+|++
T Consensus 85 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i 164 (226)
T cd03234 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164 (226)
T ss_pred EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE
Confidence 99998765556799998753211 1 00 1 1122344 88999999889999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHHhhcCEEEEEeCCc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVYEGQP 545 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~-~~~~~~adrviv~~g~~ 545 (605)
|||||||+|||+.++..+.++|+++.+ .+.|+|++||++ +++..+||++++|+++.
T Consensus 165 lllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 165 LILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999854 489999999998 68899999999998654
No 278
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.8e-35 Score=284.57 Aligned_cols=170 Identities=33% Similarity=0.499 Sum_probs=137.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
.++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +....+. ..
T Consensus 6 ~~~~~~-~~~l~~~~~~i~~G-----~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~---~~g~~~~----------~~ 66 (180)
T cd03214 6 SVGYGG-RTVLDDLSLSIEAG-----EIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL---LDGKDLA----------SL 66 (180)
T ss_pred EEEECC-eeeEeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEECC----------cC
Confidence 667765 34688999998887 78999999999999999999999999999874 1111110 00
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~ 508 (605)
...... .. -.++.++++.+++.+..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 67 ~~~~~~-~~-------i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 138 (180)
T cd03214 67 SPKELA-RK-------IAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138 (180)
T ss_pred CHHHHH-HH-------HhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 111110 00 0112228888999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|+++..+.+.|+|++|||++++..+|||+++|+++.
T Consensus 139 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 175 (180)
T cd03214 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175 (180)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999865447899999999999999999999998654
No 279
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.6e-35 Score=315.13 Aligned_cols=200 Identities=27% Similarity=0.323 Sum_probs=149.5
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC--ceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL--GRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~--G~i~~~~~~~~~~ 144 (605)
+.|++.||. ++|+.. ..+.+++ .+.+||+++|+||||||||||+++|+|+++|+. |++..
T Consensus 4 ~~l~~~~l~--------~~~~~~-~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~-------- 66 (362)
T TIGR03258 4 GGIRIDHLR--------VAYGAN-TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI-------- 66 (362)
T ss_pred eEEEEEEEE--------EEECCe-EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEE--------
Confidence 467777654 466543 3456665 357999999999999999999999999999999 99842
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.++.+... ......+.+|.....|. .+..++... ......+.+++++++.++|++++++++.+||
T Consensus 67 ---~g~~~~~~~~----~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LS 139 (362)
T TIGR03258 67 ---ADRDLTHAPP----HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLS 139 (362)
T ss_pred ---CCEECCCCCH----HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCC
Confidence 2221111000 00011222222222221 111111110 1122345678999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP--NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~--g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||+|||+|||||+.+|++||||||||+||+..+.++.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 140 gGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD 214 (362)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999876 79999999999999999999999964
No 280
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.9e-35 Score=300.89 Aligned_cols=209 Identities=32% Similarity=0.522 Sum_probs=166.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-------------ccccC----
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-------------DVEIP---- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-------------~~~~~---- 411 (605)
+++|+.....++++++ +.+| |+++|+||||||||||+++|+|+++|++|++. +....
T Consensus 7 ~~~y~~~~~~l~~i~~-i~~G-----e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 7 VHRYGPNSFKLHRLPV-PREG-----QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred ceeecCcchhhhcCCC-CCCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 6777643335667662 5555 89999999999999999999999999999983 11111
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
...++|++|+..... .++.+.+...... ......+.++++.+++.+..++.+.+|||||+|||+|||||+.+|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIP-KAVKGKVGELLKK-KDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred HhhhcccceeeecchhccCc-hHHHHHHHHHhch-hHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 123678888754432 3444433221111 122345778999999999899999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccce
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLS 566 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~ 566 (605)
+++||||||++||+.++..+.++|+++.+ .+.|||+||||++++..+||++++|+|+++..+..+.|..++.+.|.|..
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLD 237 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEECCCCCcceeeecCccHHHHHHHHHh
Confidence 99999999999999999999999999865 48999999999999999999999999988766778889998888777764
No 281
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-35 Score=317.68 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=148.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+++||+++|+||||||||||+|+|+|+++|+.|++..
T Consensus 3 ~L~~~nl--------s~~y~~~-~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l----------- 62 (402)
T PRK09536 3 MIDVSDL--------SVEFGDT-TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV----------- 62 (402)
T ss_pred eEEEeeE--------EEEECCE-EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE-----------
Confidence 4666655 5567643 3456666 45899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh-------hhcC--chHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG-------QVLD--QKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~-------~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|..+..+....+.. ..++.+|.....+. .+...+. ..+. ....+++++++++.+++.++.++++.+|
T Consensus 63 ~G~~i~~~~~~~~~~--~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~L 140 (402)
T PRK09536 63 AGDDVEALSARAASR--RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSL 140 (402)
T ss_pred CCEEcCcCCHHHHhc--ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 222221111000000 11122222111000 0111110 0011 2234567899999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||++|||||+++|++|||||||++||+..+.++.++|+++.+++.|||++|||++++..+||++++|+++
T Consensus 141 SgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 141 SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999877899999999999999999999999753
No 282
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=306.37 Aligned_cols=187 Identities=26% Similarity=0.373 Sum_probs=138.5
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQ 171 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q 171 (605)
.|.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++.........-.....+.+|
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~~~~~~ig~v~q 90 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII-----------DGVDITDKKVKLSDIRKKVGLVFQ 90 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-----------CCEECCCcCccHHHHhhceEEEec
Confidence 456665 45799999999999999999999999999999999842 222211100000000001122222
Q ss_pred ccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc--hhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 172 YVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN--QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 172 ~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~--~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.... ..+..++.+. +.....++++.++++.+||. +..++++.+|||||+||++||+||+.+|++|||
T Consensus 91 ~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llll 168 (287)
T PRK13637 91 YPEY--QLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILIL 168 (287)
T ss_pred Cchh--ccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2100 0001112111 12223456788999999997 788999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||++||+..+.++.++|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G 221 (287)
T PRK13637 169 DEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221 (287)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999865 899999999999999999999999643
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=334.70 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=165.0
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-------------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI------------- 410 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~------------- 410 (605)
++.|+. ....+++++|++.+| |++||+||||||||||+|+|+|+++|++|.+. +..+
T Consensus 19 ~~~y~~~~~~~~~l~~is~~v~~G-----e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 19 NIAFMQEQQKIAAVRNLSFSLQRG-----ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred EEEecCCCCceeEEEeeEEEECCC-----CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccC
Confidence 677753 134789999999888 78999999999999999999999999999864 1100
Q ss_pred --------CcceeEeecCcC--CCCCcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc---hhhccCcCcCChhH
Q 040300 411 --------PEFNVSYKPQKI--SPKFQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE---QLMDQEVVNLSGGE 472 (605)
Q Consensus 411 --------~~~~i~y~~q~~--~~~~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~---~~~~~~~~~LSGGe 472 (605)
....|+|++|++ ......||.+++...... ... ....+.++++.++|. ..+++++.+|||||
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq 173 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGM 173 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHH
Confidence 012599999986 233447999987542211 111 124567889999995 46899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecC
Q 040300 473 LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVAN 552 (605)
Q Consensus 473 ~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~ 552 (605)
||||+||+||+.+|+||||||||++||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++..+ ..+
T Consensus 174 ~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~--~~g 251 (623)
T PRK10261 174 RQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV--ETG 251 (623)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec--ccC
Confidence 999999999999999999999999999999999999999997666899999999999999999999999865432 457
Q ss_pred Chhhhhc
Q 040300 553 APQSLLT 559 (605)
Q Consensus 553 ~p~~~~~ 559 (605)
++++++.
T Consensus 252 ~~~~~~~ 258 (623)
T PRK10261 252 SVEQIFH 258 (623)
T ss_pred CHHHhhc
Confidence 7777754
No 284
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.7e-35 Score=293.33 Aligned_cols=194 Identities=25% Similarity=0.411 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..+...
T Consensus 5 ~l~~~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~-----------~g~~~~~~~~~-- 70 (213)
T cd03301 5 NVTKRFGNV-TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI-----------GGRDVTDLPPK-- 70 (213)
T ss_pred eeEEEECCe-eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECCcCCcc--
Confidence 455666543 2455555 35899999999999999999999999999999998752 11111100000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.....+.+|.....+. .+..++.. . ......++++.++++.+|+.+.+++++.+|||||+||++||+||+.+
T Consensus 71 --~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 71 --DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred --cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0001111221111110 00011100 0 11223345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+++||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|..
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 206 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND 206 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 9999999999999999999999999999864 89999999999999999999999964
No 285
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.4e-35 Score=327.00 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=163.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeeecc------------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDSDV------------------ 408 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~~~------------------ 408 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|++ +|++|++...
T Consensus 7 ~~~~~~-~~~l~~is~~i~~G-----e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 7 TKKFDG-KEVLKNISFTIEEG-----EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred EEEECC-eEeeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 677765 34789999999888 689999999999999999999997 7999987411
Q ss_pred --------------cc---C-------cceeEeecCc-CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCch
Q 040300 409 --------------EI---P-------EFNVSYKPQK-ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQ 459 (605)
Q Consensus 409 --------------~~---~-------~~~i~y~~q~-~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~ 459 (605)
.. . ...++|++|+ .......|+.+++...... .... ...+.++++.+++++
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 00 0 1248999997 3333456898877532211 1111 235678999999999
Q ss_pred hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE
Q 040300 460 LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539 (605)
Q Consensus 460 ~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi 539 (605)
..++++.+|||||||||+|||||+++|++|||||||++||+.++..++++|+++.++.|.|||+||||++++..+|||++
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999999999999999999999999999999999999876668999999999999999999999
Q ss_pred EEeCCcceeeecCChhhhhc
Q 040300 540 VYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 540 v~~g~~~~~~~~~~p~~~~~ 559 (605)
+|+++... ..++++++..
T Consensus 241 ~l~~G~i~--~~g~~~~~~~ 258 (520)
T TIGR03269 241 WLENGEIK--EEGTPDEVVA 258 (520)
T ss_pred EEeCCEEe--eecCHHHHHH
Confidence 99864432 3466666544
No 286
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-35 Score=325.54 Aligned_cols=201 Identities=20% Similarity=0.256 Sum_probs=164.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++| ++|++. +..+. ...++
T Consensus 12 ~~~~~~-~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (506)
T PRK13549 12 TKTFGG-VKALDNVSLKVRAG-----EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA 85 (506)
T ss_pred EEEeCC-eEeecceeEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeE
Confidence 677865 34789999999988 68999999999999999999999996 799875 22221 13599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc---C-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD---S-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~---~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
|++|+.......|+.+++...... . .. ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 86 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 165 (506)
T PRK13549 86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL 165 (506)
T ss_pred EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999987655567999987532111 0 11 1235678999999998899999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++++++.. ...++++++.
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~ 231 (506)
T PRK13549 166 ILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRH--IGTRPAAGMT 231 (506)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEE--eeecccccCC
Confidence 99999999999999999999999854 589999999999999999999999986543 3445665553
No 287
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=8e-35 Score=293.26 Aligned_cols=199 Identities=21% Similarity=0.338 Sum_probs=155.5
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~ 418 (605)
.+.|+. ....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... + ...++|+
T Consensus 7 ~~~~~~~~~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 7 RFRYKPDGPVILDNISLRIKPG-----EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred EEecCCCCccceeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 566753 234688999999888 78999999999999999999999999999875 2111 1 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHH---------HHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFV---------SDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~---------~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... +..|+.+++...... . ..... .++++.+ ++...+++++.+|||||||||+|||||+.+|+
T Consensus 82 ~q~~~~-~~~tv~~nl~~~~~~-~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 82 LQENVL-FNRSIRDNIALADPG-M-SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred cCCchh-ccchHHHHhhccCCC-C-CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 998654 467999887532111 1 11111 2233444 55556678899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..+.++|+++. + |.|||++|||++++. .||++++|+++.. ...+++++++..
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i--~~~~~~~~~~~~ 226 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRI--VEQGSHDELLAE 226 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEEcCHHHHHhc
Confidence 999999999999999999999999984 3 899999999999996 5999999986543 345777777654
No 288
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-35 Score=290.64 Aligned_cols=192 Identities=26% Similarity=0.413 Sum_probs=142.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+... .
T Consensus 5 ~l~~~~~~~-~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~----~ 68 (210)
T cd03269 5 NVTKRFGRV-TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF-----------DGKPLDIA----A 68 (210)
T ss_pred EEEEEECCE-EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCCchhHH----H
Confidence 455666542 3455555 45799999999999999999999999999999999852 12111100 0
Q ss_pred HHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.....+.+|.....+. .+...+. .. .......+.+.++++.+++.+.+++++.+|||||+||++||+||+.+
T Consensus 69 --~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 69 --RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred --HccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 0011112222111110 0111110 00 11123346788899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+++||||||++||+.++..+.+.|+++.+++.|||++|||++++..+||++++|..
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 203 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNK 203 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeC
Confidence 999999999999999999999999999977789999999999999999999999964
No 289
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.8e-35 Score=290.71 Aligned_cols=191 Identities=24% Similarity=0.331 Sum_probs=144.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++... .. .
T Consensus 5 ~l~~~~~~~-~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~-~~-~ 70 (208)
T cd03268 5 DLTKTYGKK-RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF-----------DGKSYQKN-IE-A 70 (208)
T ss_pred EEEEEECCe-EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------CCCcccch-HH-H
Confidence 456677543 3455565 45799999999999999999999999999999999852 22222111 00 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. -..++.+|.....+. .++.+.+. .....+++.++++.++|.+.+++++.+|||||+|||+||+||+.+|
T Consensus 71 ~--~~i~~~~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 71 L--RRIGALIEAPGFYPN---LTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred H--hhEEEecCCCccCcc---CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 0 012223332211111 12222110 0012456788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|..
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999987789999999999999999999999964
No 290
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=298.37 Aligned_cols=193 Identities=24% Similarity=0.325 Sum_probs=141.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++... |.++......
T Consensus 8 l~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~--- 72 (239)
T cd03296 8 VSKRFGDF-VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG-----------GEDATDVPVQ--- 72 (239)
T ss_pred EEEEECCE-EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC-----------CEECCcCCcc---
Confidence 45566542 3466666 468999999999999999999999999999999987421 1111100000
Q ss_pred HHHHHhhcccccccchh-hhhchhhh---hc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQ---VL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~---~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-..++.+|.....+. .+..++.. .. ......+++.++++.++|.+..++++.+|||||+||++||+||
T Consensus 73 -~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 73 -ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred -ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 0001112222111110 01111100 00 1112245678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+..+..+.++|++++++ |+|||+||||++++..+||++++|..
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 212 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK 212 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999875 89999999999999999999999964
No 291
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-35 Score=296.97 Aligned_cols=201 Identities=22% Similarity=0.332 Sum_probs=160.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
++.|+.. ..+++++|++.+| |+++|+||||||||||+++|+|+++ | ++|++. +.... .
T Consensus 19 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 19 NLWYGQH-HALKNINLSIPEN-----EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred EEEECCe-eeEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 6777653 4789999998888 7899999999999999999999997 3 589874 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.... ..|+.+++...... .... ...+.++++.+++. +.+++++.+|||||+|||+|||||+
T Consensus 93 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 93 KNIGMVFQKGNPF-PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hceEEEecCCccc-ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999986544 35999887432111 1111 13356678888884 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|+|+||||++++..+|||+++|+++.. ...++|++++..
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 244 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGEL--VECNDTNKMFSN 244 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEECCHHHHhhC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 355788887653
No 292
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.7e-35 Score=290.66 Aligned_cols=194 Identities=26% Similarity=0.339 Sum_probs=140.7
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++..+...
T Consensus 7 v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~ 75 (221)
T TIGR02211 7 LGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF-----------NGQSLSKLSSN 75 (221)
T ss_pred eeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEEhhhcCHh
Confidence 44556431 12455555 35799999999999999999999999999999999852 22222111000
Q ss_pred HHHH--HHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHH
Q 040300 159 ILED--NLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 159 ~~~~--~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaI 227 (605)
.... ....++.+|.....+. .++.+. +......+++.++++.+||.+.+++.+.+|||||+||++|
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPD---FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI 152 (221)
T ss_pred HHHHHHHhcEEEEecccccCCC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 0000 0011222332111111 112111 1112234567889999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+||+.+|++|||||||++||+.++..+.+.|+++.++ +.|||+||||++++.. +|++++|.+
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~ 216 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKD 216 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeC
Confidence 99999999999999999999999999999999999764 8999999999999976 799999964
No 293
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=295.07 Aligned_cols=201 Identities=20% Similarity=0.278 Sum_probs=159.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CC---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KP---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p---~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+. +| ++|++. +.... .
T Consensus 12 ~~~~~~~-~~l~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 12 SVYYNKK-KALNSVSLDFYPN-----EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EEEECCe-eeeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 6777653 4688999998888 789999999999999999999985 46 489875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+... +..|+.+++..... ..... ...+.++++.+++. +..++.+.+|||||+|||+|||||+
T Consensus 86 ~~i~~v~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 86 KEIGMVFQQPNP-FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred hcEEEEecCCcc-CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 359999998754 34799988753211 11111 23456678888863 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||+|||+.++..+.++|+++. + +.|||+||||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 237 (252)
T PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSMQQASRISDRTGFFLDGDL--IEYNDTKQMFMN 237 (252)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 355777777553
No 294
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.7e-35 Score=314.36 Aligned_cols=200 Identities=26% Similarity=0.350 Sum_probs=150.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||+++|+|||||||||||++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~--------~~~~~~-~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i----------- 63 (353)
T TIGR03265 4 YLSIDNIR--------KRFGAF-TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ----------- 63 (353)
T ss_pred EEEEEEEE--------EEeCCe-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE-----------
Confidence 57777654 466542 2355555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+.+... ..-..++.+|.....|. .+..++... +.....+.+++++++.++|++++++++.+|||||
T Consensus 64 ~g~~~~~~~~----~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq 139 (353)
T TIGR03265 64 GGRDITRLPP----QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQ 139 (353)
T ss_pred CCEECCCCCH----HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHH
Confidence 2222211100 00112233333333332 111222111 1123345688999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ +.|+|+||||++++..+||+|++|+.+
T Consensus 140 ~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 140 QQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999775 899999999999999999999999743
No 295
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.4e-35 Score=294.95 Aligned_cols=198 Identities=22% Similarity=0.389 Sum_probs=144.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+........
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~ 72 (232)
T cd03218 5 NLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL-----------DGQDITKLPMHKR 72 (232)
T ss_pred EEEEEeCCE-EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEecccCCHhHH
Confidence 456677543 3466666 46899999999999999999999999999999998742 1211111000000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
. .....+.+|.....+. .+..++.. . ........++.++++.+++.+.+++.+.+|||||+||++||+||+.+
T Consensus 73 ~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 73 A-RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred H-hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0 0001122222111111 11111110 0 01122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||++++|+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999877899999999999999999999999753
No 296
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-35 Score=302.49 Aligned_cols=195 Identities=21% Similarity=0.293 Sum_probs=144.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 29 ~~~~~~~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i-----------~g~~~~~~~~~~~ 96 (269)
T cd03294 29 EILKKTGQT-VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI-----------DGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhcCCc-eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-----------CCEEccccChhhh
Confidence 566777764 2466666 46899999999999999999999999999999998742 2222111100000
Q ss_pred HH--HHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 161 ED--NLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 161 ~~--~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
.. .-...+.+|.....+. .++.+.+ ......+++.++++.++|.+.+++.+.+|||||+||++||+
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 97 RELRRKKISMVFQSFALLPH---RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred hhhhcCcEEEEecCcccCCC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 00 0011222222111111 1121111 11223456788999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|+.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~ 236 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999764 89999999999999999999999964
No 297
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-35 Score=295.28 Aligned_cols=200 Identities=21% Similarity=0.298 Sum_probs=160.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|+. ...+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +.... .
T Consensus 11 ~~~~~~-~~~l~~~sl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~ 84 (251)
T PRK14251 11 HLSYGN-YEALHGISLDFEEK-----ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR 84 (251)
T ss_pred EEEECC-eeeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhh
Confidence 677765 34688999998888 7899999999999999999999997 4789875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+++++..... ..... ...+.++++.+++. ..+++++.+|||||+||++|||||+
T Consensus 85 ~~i~~~~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 85 KEVGMVFQQPTP-FPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred ccEEEEecCCcc-CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 359999998654 45799998753211 11111 23456788888884 5678899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.+.|+++. + +.|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 235 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDL--IEAGPTEEMFI 235 (251)
T ss_pred cCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEE--EEeCCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 34577777654
No 298
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=278.41 Aligned_cols=157 Identities=34% Similarity=0.479 Sum_probs=135.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~~~~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 7 SKRYGKK-TALDDISLTVEKG-----EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred EEEECCe-eeeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 5667653 4688999998888 78999999999999999999999999999875 22111 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
+.......|+.+++. |||||+|||+|||||+.+|++|||||||++||+
T Consensus 81 ~~~~~~~~tv~~~~~--------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 81 EPSLYENLTVRENLK--------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred CCccccCCcHHHHhh--------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 876544567777652 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
.++..+.++|+++.++ |.|+|++|||.+++..+||++++|+.+
T Consensus 129 ~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 129 ESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 9999999999998654 899999999999999999999999853
No 299
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=293.56 Aligned_cols=201 Identities=20% Similarity=0.302 Sum_probs=159.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+| ++|++. +.... .
T Consensus 10 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 10 DLFYGDF-QALKKINLDIEEN-----QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEECCc-eeeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 6777653 4688999998888 78999999999999999999999863 689875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC----CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... .... ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 84 ~~i~~~~q~~~~~-~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 84 KRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred ccEEEEecCCccC-cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 3589999986543 4799887753211 1111 123466778888764 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++++++.. ...+++.++...
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 235 (250)
T PRK14240 163 VEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEI--VEFGDTVDLFTN 235 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999983 3 78999999999999999999999986543 345777776543
No 300
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-35 Score=295.43 Aligned_cols=200 Identities=20% Similarity=0.299 Sum_probs=158.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+.+ |++|++. +..+. .
T Consensus 12 ~~~~~~-~~~l~~is~~i~~G-----e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 12 NLWYGS-KQILFDINLDIYKR-----EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEEECC-eeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 667764 34688999998888 7899999999999999999999986 4689875 22110 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhh--hccCCC----CHHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHHHH
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQK--IRDSYT----HPQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~--~~~~~~----~~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
..++|+||+.... ..|+.+++... ...... ....+.++++.+++.+ ..++.+.+|||||+|||+|||||
T Consensus 86 ~~i~~v~q~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPF-PKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccc-cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 3589999986543 35888876432 111111 1234567889999864 56789999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.++|+++ .+ +.|||+||||++++..+|||+++|+.+.. ...+++.+++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 237 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQEL-KK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRI--VEYNTTQEIFK 237 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHhhcCEEEEEECCEE--EEeCCHHHHhc
Confidence 9999999999999999999999999999998 33 89999999999999999999999986543 34567776654
No 301
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.3e-35 Score=325.52 Aligned_cols=198 Identities=23% Similarity=0.261 Sum_probs=161.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|++
T Consensus 10 ~~~~~~~-~il~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 83 (490)
T PRK10938 10 TFRLSDT-KTLQLPSLTLNAG-----DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83 (490)
T ss_pred EEEcCCe-eecccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceec
Confidence 7778653 4789999999888 68999999999999999999999999999875 21111 12389999
Q ss_pred CcCCCC--------CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPK--------FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~--------~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+.... +..++.+++... ......+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQDE----VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred cCcchhhcccchhhccccHHHhcccc----hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 975321 134666654211 11234567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 160 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~ 224 (490)
T PRK10938 160 DEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTL--AETGEREEILQ 224 (490)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEE--EEeCCHHHHhc
Confidence 999999999999999999999865 489999999999999999999999986543 34467776654
No 302
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.4e-35 Score=327.01 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=162.2
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc--------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI-------- 410 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~-------- 410 (605)
+++|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++| ++|++. +..+
T Consensus 12 ~~~~~~~~~~~~~l~~isl~i~~G-----e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 86 (529)
T PRK15134 12 SVAFRQQQTVRTVVNDVSLQIEAG-----ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL 86 (529)
T ss_pred EEEecCCCCceeeeeceEEEEeCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHH
Confidence 677753 134789999999888 78999999999999999999999987 789874 2111
Q ss_pred ---CcceeEeecCcCC--CCCcCcHHHHHHhhh--ccCCC---CHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHH
Q 040300 411 ---PEFNVSYKPQKIS--PKFQSTVRHLLHQKI--RDSYT---HPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVA 477 (605)
Q Consensus 411 ---~~~~i~y~~q~~~--~~~~~tv~~~~~~~~--~~~~~---~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRva 477 (605)
....++|++|+.. .....++.+++.... ..... ....+.++++.+++.+ ..++++.+|||||||||+
T Consensus 87 ~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~ 166 (529)
T PRK15134 87 RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVM 166 (529)
T ss_pred HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHH
Confidence 0135999999853 223357777654211 11111 1245678999999975 468999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 478 iA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||||+++|++|||||||++||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...++++++
T Consensus 167 iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i--~~~g~~~~~ 244 (529)
T PRK15134 167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC--VEQNRAATL 244 (529)
T ss_pred HHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE--EEeCCHHHH
Confidence 999999999999999999999999999999999998665689999999999999999999999986543 345777776
Q ss_pred hc
Q 040300 558 LT 559 (605)
Q Consensus 558 ~~ 559 (605)
+.
T Consensus 245 ~~ 246 (529)
T PRK15134 245 FS 246 (529)
T ss_pred hh
Confidence 54
No 303
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=294.77 Aligned_cols=203 Identities=19% Similarity=0.328 Sum_probs=161.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~-----~----~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +..+ . .
T Consensus 14 ~~~~~~~-~il~~is~~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~ 87 (261)
T PRK14258 14 SFYYDTQ-KILEGVSMEIYQS-----KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLR 87 (261)
T ss_pred EEEeCCe-eEeeceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhh
Confidence 6777653 4688999998888 789999999999999999999999985 67653 2111 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-CC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-TH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+.+++...... .. .. ...+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 88 ~~i~~~~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 88 RQVSMVHPKPNL-FPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred ccEEEEecCCcc-CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 358999998654 347998877532111 11 11 23456788888874 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-----CcceeeecCChhhhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-----QPSVDCVANAPQSLL 558 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-----~~~~~~~~~~p~~~~ 558 (605)
.+|++|||||||++||+.++..+.+.|+++..+.+.|||+||||++++..+||||++|++ +.. ...++|+++.
T Consensus 167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i--~~~~~~~~~~ 244 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL--VEFGLTKKIF 244 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE--EEeCCHHHHH
Confidence 999999999999999999999999999998655589999999999999999999999996 432 3557888876
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
+.
T Consensus 245 ~~ 246 (261)
T PRK14258 245 NS 246 (261)
T ss_pred hC
Confidence 53
No 304
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3e-35 Score=331.41 Aligned_cols=203 Identities=40% Similarity=0.670 Sum_probs=161.1
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+. +.|..++ .+++||++||+|+||||||||+|+|+|+++|+.|++....
T Consensus 346 ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~----------------------- 400 (590)
T PRK13409 346 LTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPEL----------------------- 400 (590)
T ss_pred eEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEee-----------------------
Confidence 4456754 3355555 4589999999999999999999999999999999985210
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
..++.+|+....+. .++.+.+. .......+.++++.++|.+.+++++.+|||||||||+||+||+++|++
T Consensus 401 ---~i~y~~Q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 401 ---KISYKPQYIKPDYD---GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred ---eEEEecccccCCCC---CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 01122222211110 11111110 001123467899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCC
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~ 316 (605)
|||||||++||+.++..+.++|++++++ |+|||+||||++++..+||++++|+|+++.+|..+.|.+.+++.|.|+...
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeeecCCchhHHHHHHHHHHHc
Confidence 9999999999999999999999999864 899999999999999999999999999988888888988999999888743
No 305
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=294.24 Aligned_cols=201 Identities=20% Similarity=0.282 Sum_probs=159.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +.... .
T Consensus 11 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 11 NIYYGD-KQAVKNVNLDVQRG-----TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred EEEECC-EEeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 677765 34688999998888 789999999999999999999999874 78874 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCCH----HHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTHP----QFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~~----~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.......|+.+++..... ...... +.+.++++.+++ .+..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 359999999765555799988753221 111111 234455666665 35678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|++|||||||++||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+++.. ...+++++++.
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 236 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDL--VEHGPTDQLFT 236 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 9999999999999999999999999999984 3 69999999999999999999999986543 35577777654
No 306
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-35 Score=309.86 Aligned_cols=199 Identities=21% Similarity=0.338 Sum_probs=144.7
Q ss_pred ceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+. ....+++++ .+++||++||+|+||||||||+|+|+|+++|+.|++. +.|.++..+...
T Consensus 7 l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~-----------~~g~~i~~~~~~ 75 (343)
T PRK11153 7 ISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL-----------VDGQDLTALSEK 75 (343)
T ss_pred EEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------ECCEECCcCCHH
Confidence 4556651 123455665 4589999999999999999999999999999999985 222222111000
Q ss_pred HHH-HHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILE-DNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~-~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
... -.-...+.+|.....+. .+..++.. . ......+.++.++++.+||.+.+++++.+|||||+||++||+||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 000 00011222332221111 11111110 0 11223346788999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++||+.++..+.++|+++.++ |+|||+||||++++..+||++++|..+
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G 217 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999765 899999999999999999999999643
No 307
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.9e-35 Score=294.82 Aligned_cols=198 Identities=22% Similarity=0.309 Sum_probs=143.1
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+.........
T Consensus 7 l~~~~~~~-~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~ 74 (240)
T PRK09493 7 VSKHFGPT-QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV-----------DGLKVNDPKVDERL 74 (240)
T ss_pred EEEEECCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECCcCChhHHH
Confidence 45566532 2455555 35799999999999999999999999999999999852 22211110000000
Q ss_pred HHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
-.-..++.+|.....+. .+...+.. . .......+++.++++.+||++.+++.+.+|||||+||++||+||+.+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 00011222232211111 11111100 0 11122345678899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+++||||||++||+.++..+.++|+++.++++|||+||||++++..+||++++|..+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 212 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999877899999999999999999999999643
No 308
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=290.89 Aligned_cols=198 Identities=18% Similarity=0.330 Sum_probs=152.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 9 ~~~~~~~~~~l~~isl~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 83 (229)
T cd03254 9 NFSYDEKKPVLKDINFSIKPG-----ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL 83 (229)
T ss_pred EEecCCCCccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence 667764234688999999888 68999999999999999999999999999875 21111 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc-----------CCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL-----------LIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|+... +..|+.+++...... .....+.++++.+ ++....++.+.+|||||+|||+|||||+.+|++
T Consensus 84 q~~~~-~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 84 QDTFL-FSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred CCchh-hhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 98653 445888877432111 1122333344444 344445667899999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||||||+|||+.++..++++|+++. + +.|||+||||++++.. ||++++|+++... ..++++++.+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~--~~~~~~~~~~ 226 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKN-ADKILVLDDGKII--EEGTHDELLA 226 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEEeCCeEE--EeCCHHHHHh
Confidence 99999999999999999999999983 3 8999999999999864 9999999865532 3456555543
No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=295.08 Aligned_cols=198 Identities=21% Similarity=0.242 Sum_probs=160.2
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHH
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLH 435 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~ 435 (605)
...+.+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.. .+++.+|........|+.+++.
T Consensus 37 ~~il~~is~~i~~G-----e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~---~~g-~~~~~~~~~~~~~~~tv~enl~ 107 (264)
T PRK13546 37 FFALDDISLKAYEG-----DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD---RNG-EVSVIAISAGLSGQLTGIENIE 107 (264)
T ss_pred eEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECC-EEeEEecccCCCCCCcHHHHHH
Confidence 44688899998888 78999999999999999999999999999874 111 2566777654445578988764
Q ss_pred hhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040300 436 QKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511 (605)
Q Consensus 436 ~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 511 (605)
.... ..+.. ...+.++++.+++.+..++++.+|||||+|||+||+||+.+|++|||||||+|||+.++..+.++|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~ 187 (264)
T PRK13546 108 FKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187 (264)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 3211 11211 1234567888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccc
Q 040300 512 RFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFL 565 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l 565 (605)
++. +.|.|+|++|||++++..+||++++++++.. ...++++++......|+
T Consensus 188 ~~~-~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i--~~~g~~~~~~~~~~~~~ 238 (264)
T PRK13546 188 EFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL--KDYGELDDVLPKYEAFL 238 (264)
T ss_pred HHH-HCCCEEEEEcCCHHHHHHHcCEEEEEECCEE--EEeCCHHHHHHHhHHHH
Confidence 985 4589999999999999999999999986544 35578888777644443
No 310
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=298.01 Aligned_cols=200 Identities=19% Similarity=0.291 Sum_probs=159.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~-----~----~ 412 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+.+ |++|++. +..+ . .
T Consensus 46 ~~~~~~-~~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~ 119 (286)
T PRK14275 46 SIYYGE-FEAVKKVNADILSK-----YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLR 119 (286)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhh
Confidence 777765 34789999998888 7899999999999999999999864 4899875 2211 0 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.+++ .+.+++++.+|||||+|||+|||||+
T Consensus 120 ~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 120 KKIGMVFQKPNPF-PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred hcEEEECCCCCCC-ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 3599999987543 45999987542111 1111 2345677888887 45678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++.. +.|||+||||++++..+|||+++|+++.. ...+++.++.+
T Consensus 199 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i--~~~g~~~~~~~ 270 (286)
T PRK14275 199 VEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVL--VEHAPTAQLFT 270 (286)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 99999999999999999999999999999843 58999999999999999999999986543 34577777654
No 311
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=292.14 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +.... .
T Consensus 11 ~~~~~~-~~il~~~s~~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 11 NFFYHK-HQVLKNINMDFPER-----QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred EEEECC-eeEecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhh
Confidence 677765 34689999998888 689999999999999999999999997 58764 21111 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC----CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... ... ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 85 KRVGMVFQQPNPF-PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred ceEEEEecCCccC-cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999997543 45998887532111 111 123355667777764 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++ . .+.|||+||||++++..+||++++|+++.. ...++++++..
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 235 (251)
T PRK14249 164 IEPEVILMDEPCSALDPVSTMRIEELMQEL-K-QNYTIAIVTHNMQQAARASDWTGFLLTGDL--VEYGRTGEIFS 235 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH-h-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeE--EEeCCHHHHHh
Confidence 999999999999999999999999999998 3 379999999999999999999999986543 34577777654
No 312
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.8e-35 Score=292.09 Aligned_cols=203 Identities=28% Similarity=0.327 Sum_probs=144.8
Q ss_pred eEEEecCCcccCCCceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+|++.||. ++|+.. ...+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.
T Consensus 6 ~l~~~~l~--------~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~--------- 68 (228)
T PRK10584 6 IVEVHHLK--------KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS--------- 68 (228)
T ss_pred eEEEeeeE--------EEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE---------
Confidence 56666654 455432 12355555 3579999999999999999999999999999999984
Q ss_pred hhhccchhhhhHHHHHHH--HHHHhhcccccccchh-hhhchhhh--h---cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 145 TYFRGSELQNYFTRILED--NLKAIIKPQYVDHIPK-AVQGNVGQ--V---LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~--~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
+.|..+..+....... ....++.+|.....+. .+..++.. . ......++++.++++.++|.+.+++.+.+
T Consensus 69 --~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (228)
T PRK10584 69 --LVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ 146 (228)
T ss_pred --ECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhh
Confidence 2222221110000000 0011222332221111 11111110 0 11123356788999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||||+||++||+||+.+|++|||||||++||+.++..+.+.|++++++ +.|||++|||++++.. ||++++|.+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~ 221 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVN 221 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999764 8999999999999865 999999964
No 313
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=315.03 Aligned_cols=199 Identities=25% Similarity=0.313 Sum_probs=147.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|| +++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 3 ~l~i~~l--------~~~~~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~----------- 62 (369)
T PRK11000 3 SVTLRNV--------TKAYGDV-VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI----------- 62 (369)
T ss_pred EEEEEEE--------EEEeCCe-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-----------
Confidence 4666665 4566542 2455555 45799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+...... ....++.+|.....|. .+..++... ......++++.++++.++|.+++++++.+|||||
T Consensus 63 ~g~~i~~~~~~----~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq 138 (369)
T PRK11000 63 GEKRMNDVPPA----ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQ 138 (369)
T ss_pred CCEECCCCCHh----HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHH
Confidence 22221110000 0011222332222221 111111100 1122335678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|||+||||++++..+||+|++|+.
T Consensus 139 ~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999765 89999999999999999999999974
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=323.00 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 11 ~~~~~~-~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 11 GKTFPG-VKALDDISFDCRAG-----QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred EEEECC-EEEEeeeeEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 677765 34689999999888 68999999999999999999999999999975 22211 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc-c--CCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR-D--SYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~-~--~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+.......|+.+++..... . .... ...+.++++.+++....++++.+|||||||||+|||||+.+|++|||
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 998765556799988754211 0 1111 23567889999999888999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~ 217 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGR 217 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999854 58999999999999999999999998654
No 315
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=296.03 Aligned_cols=201 Identities=19% Similarity=0.335 Sum_probs=159.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+. .
T Consensus 31 ~~~~~~~-~il~~vsl~i~~G-----e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 31 NLWYGED-HALKNINLDIHEN-----EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred EEEECCc-ceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 7778653 4689999999888 7899999999999999999999997 6899875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcC----CchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLL----IEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~----l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.++ +.+..++++.+|||||+|||+|||||+
T Consensus 105 ~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 105 TNVGMVFQKPNPF-PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred hhEEEEecCCccc-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 3599999987543 45999887532111 1111 123456666664 456678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|+|+||||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 184 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 256 (271)
T PRK14238 184 IEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNMQQAARISDKTAFFLNGYV--NEYDDTDKIFSN 256 (271)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHcC
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 345777776543
No 316
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-34 Score=278.97 Aligned_cols=160 Identities=31% Similarity=0.428 Sum_probs=135.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~------~~~i~y 417 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... + ...++|
T Consensus 7 ~~~~~~-~~~l~~i~~~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 7 SKRYGQ-KTVLNDVSLNIEAG-----EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred EEEECC-eEEEeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 566765 34688999999888 78999999999999999999999999999875 2111 1 235899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
++|+.......|+.+++... |||||+||++|||||+.+|++|||||||++
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~ 130 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSA 130 (178)
T ss_pred EecCCccCCCCCHHHheeec------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 99986654456777765211 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||+.++..+.++|+++.++.+.|+|+||||++++..+||++++|+.+
T Consensus 131 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 131 LDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 99999999999999986644799999999999999999999999753
No 317
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.5e-35 Score=276.61 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=152.3
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CChh----hh---hhhhccch
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDWQ----EI---LTYFRGSE 151 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~~----~~---~~~~~g~~ 151 (605)
++++++|+.....|.+++ .+.+||++-|+||||||||||+|+|.+..+|+.|++.-. -+.. .. +..--|..
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvV 84 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVV 84 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeE
Confidence 457778876644777777 468999999999999999999999999999999998521 1100 00 11111333
Q ss_pred hhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 152 LQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
+|+| -.++. .+..+|.-. ......++++.++|+.+||.+..+..+.+|||||||||
T Consensus 85 FQD~------------------rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRv 146 (223)
T COG2884 85 FQDF------------------RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRV 146 (223)
T ss_pred eeec------------------cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHH
Confidence 3332 11111 112222211 12456688999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||||++.+|++||.||||.+|||....++++++.++...|.||||.|||.+.++.+-.+++.|..
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~ 212 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALED 212 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999964
No 318
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=291.32 Aligned_cols=199 Identities=22% Similarity=0.381 Sum_probs=156.3
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 7 TFRYPGDGPPVLRDISLDIPAG-----ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEeCCCCccceeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 5666543 13688999998888 78999999999999999999999999999875 22111 2358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHH---------HHHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQF---------VSDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+... +..|+.+++...... . .... ..++++.+ ++....++++.+|||||+|||+|||||+.+|+
T Consensus 82 ~q~~~~-~~~tv~enl~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 82 SQDVFL-FNDTVAENIAYGRPG-A-TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred CCCCee-ccccHHHHhhccCCC-C-CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998654 457999987532111 1 1111 23344444 56666788899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..+.+.|+++. + +.|||+||||++++.. |||+++|+.+.. ...++++++...
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i--~~~~~~~~~~~~ 226 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKI--VERGTHEELLAQ 226 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeE--eeeCCHHHHHHc
Confidence 999999999999999999999999984 3 8999999999999976 999999986543 345677776544
No 319
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=9.6e-35 Score=298.41 Aligned_cols=207 Identities=19% Similarity=0.230 Sum_probs=148.3
Q ss_pred CcceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 66 p~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
|-.+|++.||.+ +|+.. ..+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~~~~l~~~~l~~--------~~~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-------- 66 (269)
T PRK11831 4 VANLVDMRGVSF--------TRGNR-CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF-------- 66 (269)
T ss_pred ccceEEEeCeEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE--------
Confidence 445677777654 56532 3455555 35799999999999999999999999999999999742
Q ss_pred hhhccchhhhhHHHHH-HHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 145 TYFRGSELQNYFTRIL-EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~-~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|..+..+..... ...-..++.+|.....+. .+..++.. . +.......++.++++.++|.+.+++.+.+
T Consensus 67 ---~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 67 ---DGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred ---CCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 2221111000000 000011222332221111 11111110 0 11122345677899999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|+.+
T Consensus 144 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765 899999999999999999999999643
No 320
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=291.83 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=159.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +.... .
T Consensus 10 ~~~~~~~-~~l~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~ 83 (250)
T PRK14262 10 SAYYGEK-KAVKNVTMKIFKN-----QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYR 83 (250)
T ss_pred EEEeCCc-eeEeeeeEeecCC-----CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhh
Confidence 6677653 4688999998888 78999999999999999999999984 889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+++++...... .... ...+.++++.+++. ...++++.+|||||+||++|||||+
T Consensus 84 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 84 KKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhEEEEecCCccC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 3599999986543 47999887532111 1111 12356678888875 3578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|+|+||||++.+..+|||+++++.+.. ...++++++..
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 234 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGEL--IEYGPTREIVE 234 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 35577777754
No 321
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-35 Score=295.27 Aligned_cols=198 Identities=24% Similarity=0.362 Sum_probs=144.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.....+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 5 ~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 73 (242)
T cd03295 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI-----------DGEDIREQDPVEL 73 (242)
T ss_pred EEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-----------CCeEcCcCChHHh
Confidence 45566764122455665 45899999999999999999999999999999999752 2221111000000
Q ss_pred HHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCch--hhcccCCCCChHHHHHHHHHHHHc
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQ--VIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~--~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
. ...++.+|.....+. .+..++. .. ......++++.++++.++|.+ ..++.+.+|||||+||++||+||+
T Consensus 74 ~--~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 R--RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred h--cceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 0 011222332211111 1111111 00 111223456889999999985 889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|++|||||||++||+.++..+.+.|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999764 899999999999999999999999753
No 322
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.2e-35 Score=310.07 Aligned_cols=200 Identities=24% Similarity=0.323 Sum_probs=148.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..+++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 2 ~L~i~~l--------~~~~~~~-~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i----------- 61 (353)
T PRK10851 2 SIEIANI--------KKSFGRT-QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF----------- 61 (353)
T ss_pred EEEEEEE--------EEEeCCe-EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 4666665 4466542 3455555 35799999999999999999999999999999999842
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|.++..... .....++.+|.....|. .+..++... .......+++.++++.++|++++++++.+|
T Consensus 62 ~g~~i~~~~~----~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 137 (353)
T PRK10851 62 HGTDVSRLHA----RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQL 137 (353)
T ss_pred CCEECCCCCH----HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 2222111000 00011222232222221 111111100 112234567889999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|+||||++++..+||+|++|+.+
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999876 899999999999999999999999743
No 323
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=294.49 Aligned_cols=202 Identities=18% Similarity=0.299 Sum_probs=160.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+|+|+|+++| ++|++. +..+. .
T Consensus 14 ~~~~~~-~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 14 SFYYNT-SKAIEGISMDIYRN-----KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred EEEECC-eEeecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhh
Confidence 677765 34689999999888 78999999999999999999999985 478875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... .... ....+.++++.+++ .+..++.+.+|||||+|||+|||||+
T Consensus 88 ~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 88 RQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hheEEEecccccC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3599999987544 4799998753211 1111 12345678888887 35788999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC---CcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG---QPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g---~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..++++|+++. + +.|||++|||++++..+|||+++|+. ..+.....+++.++++
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 9999999999999999999999999999984 3 58999999999999999999999972 1122345678888754
No 324
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=9.1e-35 Score=290.95 Aligned_cols=194 Identities=22% Similarity=0.322 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC-----CCCCceeeCCCChhhhhhhhccchhhhh
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL-----KPNLGRFNNPPDWQEILTYFRGSELQNY 155 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l-----~p~~G~i~~~~~~~~~~~~~~g~~l~~~ 155 (605)
+++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|++ +|+.|++.. .|.++..+
T Consensus 5 ~l~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-----------~g~~~~~~ 72 (227)
T cd03260 5 DLNVYYGDK-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL-----------DGKDIYDL 72 (227)
T ss_pred EEEEEcCCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE-----------CCEEhhhc
Confidence 455667643 3456665 45799999999999999999999999999 999999852 22222111
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhchhhhhc---------Cc-hHHHHHHHHHHhhcCCchhhccc--CCCCChHHHH
Q 040300 156 FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQ-KDERDMKADLCTDLDLNQVIDRN--VGDLSGGELQ 223 (605)
Q Consensus 156 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~-~~~~~~~~~~l~~l~L~~~~dr~--v~~LSGGe~Q 223 (605)
........-..++.+|... .+..++.+.+ .. ...++++.++++.+||.+..++. +.+|||||+|
T Consensus 73 ~~~~~~~~~~i~~~~q~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 148 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPN----PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ 148 (227)
T ss_pred chHHHHHHhhEEEEecCch----hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH
Confidence 0000000001112222211 1111222111 01 11346678899999999877777 5999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++||+||+.+|++|||||||++||+..+..+.++|+++.++ .|||++|||++++..+||++++|..+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999876 99999999999999999999999753
No 325
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.5e-34 Score=283.53 Aligned_cols=183 Identities=22% Similarity=0.282 Sum_probs=149.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 7 ACSRGER-MLFEGLSFTLNAG-----EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred EEEECCE-EEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 5667653 4688999998888 78999999999999999999999999999875 21111 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
+.......|+.+++.............+.++++.+++.+..++++.+|||||+|||+|||||+.+|+++||||||++||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 160 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 86554457999887432111111234577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEE
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv 540 (605)
.++..+.++|+++.+ .|.|+|++|||...+ .++|++.
T Consensus 161 ~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 161 AGVALLAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence 999999999999854 589999999998654 4677764
No 326
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-34 Score=305.51 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=149.5
Q ss_pred eEEEecCCcccCCCce---EEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTT---HRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~---~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 143 (605)
.|+|.||.+.|...-. ..++. ....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|+|.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~-------- 79 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA-------- 79 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE--------
Confidence 5888888776642100 00000 112345555 3579999999999999999999999999999999984
Q ss_pred hhhhccchhhhhHHHHHHH-HHHHhhccccc--ccchh-hhhchhhh-------hcCchHHHHHHHHHHhhcCCc-hhhc
Q 040300 144 LTYFRGSELQNYFTRILED-NLKAIIKPQYV--DHIPK-AVQGNVGQ-------VLDQKDERDMKADLCTDLDLN-QVID 211 (605)
Q Consensus 144 ~~~~~g~~l~~~~~~~~~~-~~~~~~~~q~~--~~~~~-~~~~~v~~-------~l~~~~~~~~~~~~l~~l~L~-~~~d 211 (605)
|.|.++.......... .-...+.+|.. ...|. .+...+.. .+.....++++.++++.++|. +.++
T Consensus 80 ---~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~ 156 (331)
T PRK15079 80 ---WLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN 156 (331)
T ss_pred ---ECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhc
Confidence 2333222110000000 00112222221 01111 01111111 012233456788999999994 6889
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+++.+|||||+|||+||+||+.+|++||+||||++||+..+.++.++|+++.++ +.|||+||||++++..+||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999875 8999999999999999999999998
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 237 ~G 238 (331)
T PRK15079 237 LG 238 (331)
T ss_pred CC
Confidence 54
No 327
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-35 Score=292.50 Aligned_cols=197 Identities=26% Similarity=0.350 Sum_probs=141.2
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.+ ...|++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++......
T Consensus 11 l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~i~~~~~~ 79 (233)
T PRK11629 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF-----------NGQPMSKLSSA 79 (233)
T ss_pred EEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEcCcCCHH
Confidence 45566432 13466666 46899999999999999999999999999999999852 22221111000
Q ss_pred HHHH--HHHHhhcccccccchh-hhhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 159 ILED--NLKAIIKPQYVDHIPK-AVQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 159 ~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.... .....+.+|.....+. .+..++.. .+.....++++.++++.+||.+.+++.+.+|||||+||++||+|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 0000 0011222332211111 11111110 01122334678899999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+ |++++|.+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~ 220 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRD 220 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEEC
Confidence 9999999999999999999999999999999975 489999999999999875 68888864
No 328
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-35 Score=297.54 Aligned_cols=194 Identities=25% Similarity=0.342 Sum_probs=145.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.||. ++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 12 ~l~i~~l~--------~~~~~~-~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----------- 71 (257)
T PRK11247 12 PLLLNAVS--------KRYGER-TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA----------- 71 (257)
T ss_pred cEEEEEEE--------EEECCc-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-----------
Confidence 36776654 456542 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
.|..+..+ ....++.+|.....+. .++.+.+. ......++.++++.++|.+.+++.+.+|||||+||
T Consensus 72 ~g~~~~~~-------~~~i~~v~q~~~l~~~---~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqr 141 (257)
T PRK11247 72 GTAPLAEA-------REDTRLMFQDARLLPW---KKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQR 141 (257)
T ss_pred CCEEHHHh-------hCceEEEecCccCCCC---CcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 12111100 0011122222111110 12222221 11124567889999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++||+||+.+|++|||||||++||+..+..+.++|+++.+ .+.|||+||||++++..+||+|++|+.+
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999865 4899999999999999999999999743
No 329
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.9e-35 Score=291.10 Aligned_cols=197 Identities=23% Similarity=0.296 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+........
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~ 72 (222)
T cd03224 5 NLNAGYGKS-QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF-----------DGRDITGLPPHER 72 (222)
T ss_pred eEEeecCCe-eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEcCCCCHHHH
Confidence 455566543 2455555 45899999999999999999999999999999998852 1211111000000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---hcCchHHHHHHHHHHhhc-CCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---VLDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~l~~~~~~~~~~~~l~~l-~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. ....++.+|.....+. .+...+.. .........++.++++.+ ++.+.+++++.+|||||+||++||+||+.+|
T Consensus 73 ~-~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 73 A-RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred H-hcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 0 0011222332221121 11111110 011112344567788888 5888899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+..+..+.++|+++.+.+.|||++|||++++..+||++++|+.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 99999999999999999999999999987789999999999999999999999964
No 330
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-34 Score=294.43 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=146.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++...
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~---------- 63 (250)
T PRK11264 3 AIEVKNL--------VKKFHGQ-TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG---------- 63 (250)
T ss_pred cEEEece--------EEEECCe-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC----------
Confidence 4666655 4566543 3455555 457999999999999999999999999999999987421
Q ss_pred ccchhhhhH------HHHHHHHHHHhhcccccccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCchhhcccC
Q 040300 148 RGSELQNYF------TRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQVIDRNV 214 (605)
Q Consensus 148 ~g~~l~~~~------~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~~~dr~v 214 (605)
|..+.... .....-....++.+|.....+. .+..++.. ........+++.++++.+||.+..++.+
T Consensus 64 -g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 142 (250)
T PRK11264 64 -DITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP 142 (250)
T ss_pred -CEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh
Confidence 11111000 0000000112223333222211 11111110 0111223456788999999998899999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|||||+||++||+||+.+|++|||||||++||+.++..+.+.|+++.+++.|||+||||++++..+||++++|..
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 219 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQ 219 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999987799999999999999999999999964
No 331
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=293.89 Aligned_cols=201 Identities=17% Similarity=0.295 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +..+. .
T Consensus 27 ~~~~~~-~~il~~vsl~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 27 HVYYGK-KEAIKGIDMQFEKN-----KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred EEEECC-eeeEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 777765 34789999999888 7899999999999999999999997 5789875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+... +..|+.+++...... .... ...+.++++.+++. +.+++++.+|||||+|||+|||||+
T Consensus 101 ~~i~~v~q~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~ 179 (267)
T PRK14237 101 KHIGMVFQRPNP-FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA 179 (267)
T ss_pred cceEEEecCCcc-ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 359999998654 346999987542211 1111 23456778888884 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 252 (267)
T PRK14237 180 VKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDL--IEYDKTRNIFTN 252 (267)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhcC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 356777777553
No 332
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=284.45 Aligned_cols=203 Identities=21% Similarity=0.292 Sum_probs=171.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---cceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---EFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---~~~i~y~~q~~~ 423 (605)
+.+|++. .++++++|++.+| |+.|++|||||||||.+|||.|+++|++|+|. +..+. ..+|||.|.+..
T Consensus 9 tK~Fg~k-~av~~isf~v~~G-----~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG 82 (300)
T COG4152 9 TKSFGDK-KAVDNISFEVPPG-----EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG 82 (300)
T ss_pred hhccCce-eeecceeeeecCC-----eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhc
Confidence 5667764 4789999999998 68999999999999999999999999999986 22222 246999999988
Q ss_pred CCCcCcHHHHHHh--hhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQ--KIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~--~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.+..+||.+-+.. .....- .....+..||+++++.....+++.+||-|++|++.+..+++++|+++|||||+||||
T Consensus 83 Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 8888999885432 222111 123457789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|-+.+.+.+.|.++ ++.|+|||++||.|+-+..+||++++++.+.. ...|+.++++..
T Consensus 163 PVN~elLk~~I~~l-k~~GatIifSsH~Me~vEeLCD~llmL~kG~~--V~~G~v~~ir~~ 220 (300)
T COG4152 163 PVNVELLKDAIFEL-KEEGATIIFSSHRMEHVEELCDRLLMLKKGQT--VLYGTVEDIRRS 220 (300)
T ss_pred hhhHHHHHHHHHHH-HhcCCEEEEecchHHHHHHHhhhhheecCCce--EEeccHHHHHHh
Confidence 99999999999998 45799999999999999999999999984432 456888888774
No 333
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=294.20 Aligned_cols=203 Identities=18% Similarity=0.273 Sum_probs=158.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~-----~----~ 412 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+ . .
T Consensus 17 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 90 (264)
T PRK14243 17 NVYYGSF-LAVKNVWLDIPKN-----QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90 (264)
T ss_pred EEEECCE-EEeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHh
Confidence 6777653 4689999999888 7899999999999999999999986 3789875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC--CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT--HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~--~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+.... ..|+.+++...... .+. ....+.++++.+++. ...++++.+|||||+|||+|||||+.+
T Consensus 91 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 91 RRIGMVFQKPNPF-PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hhEEEEccCCccc-cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 3599999986543 35898887532111 111 123445667777774 457889999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-------CcceeeecCChhhhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-------QPSVDCVANAPQSLL 558 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-------~~~~~~~~~~p~~~~ 558 (605)
|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+|||+++|+. ..+.....++++++.
T Consensus 170 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 170 PEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999999999853 58999999999999999999999971 112334567788876
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
+.
T Consensus 248 ~~ 249 (264)
T PRK14243 248 NS 249 (264)
T ss_pred hC
Confidence 53
No 334
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=296.78 Aligned_cols=200 Identities=19% Similarity=0.326 Sum_probs=158.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +.... .
T Consensus 46 ~~~~~~-~~il~~is~~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~ 119 (285)
T PRK14254 46 NVFYGD-EQALDDVSMDIPEN-----QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALR 119 (285)
T ss_pred EEEECC-EeeEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhh
Confidence 677865 34789999998888 7899999999999999999999987 6899875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC--CCHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY--THPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~--~~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+... +..|+.+++...... .. .....+.++++.+++. +.+++++.+|||||||||+|||||+.+
T Consensus 120 ~~i~~v~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 120 RRIGMVFQKPNP-FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred ccEEEEecCCcc-CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 358999998654 345998877532111 11 1134567788899874 467899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE-EEeCCcceeeecCChhhhhc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI-VYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi-v~~g~~~~~~~~~~p~~~~~ 559 (605)
|+||||||||++||+.++..+.++|+++.+ +.|||++|||++++..+|||++ +++++.. ...+++.++..
T Consensus 199 p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i--~~~g~~~~~~~ 269 (285)
T PRK14254 199 PEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGEL--VEFDDTDKIFE 269 (285)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEE--EEeCCHHHHHh
Confidence 999999999999999999999999999854 4799999999999999999976 4565433 34566666644
No 335
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-34 Score=288.95 Aligned_cols=192 Identities=23% Similarity=0.354 Sum_probs=142.7
Q ss_pred CceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 82 DTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 82 ~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
+++++|+.. ...+.+++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~-~ 72 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI-----------NGYSIRTDRK-A 72 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEecccchH-H
Confidence 455667541 23566666 45899999999999999999999999999999999842 2222111000 0
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.. -..++.+|.....+. .++.+.+ .......++.++++.++|.+.+++++.+|||||+||++||+|
T Consensus 73 ~~--~~i~~v~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 73 AR--QSLGYCPQFDALFDE---LTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred Hh--hhEEEecCcCCcccc---CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 00 011222222111110 1111111 112234567889999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+||++++|+.
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSD 207 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999976 59999999999999999999999964
No 336
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=293.33 Aligned_cols=198 Identities=24% Similarity=0.299 Sum_probs=144.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|+ +++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~----------- 62 (241)
T PRK14250 3 EIEFKEV--------SYSSFGK-EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI----------- 62 (241)
T ss_pred eEEEEeE--------EEEeCCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 4666665 4456532 3455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCc-hhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLN-QVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe 221 (605)
.|.++......... ...++.+|.....+ .++.+.+. ......++.++++.++|. ++.++.+.+|||||
T Consensus 63 ~g~~i~~~~~~~~~--~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 136 (241)
T PRK14250 63 DGVDIKTIDVIDLR--RKIGMVFQQPHLFE----GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGE 136 (241)
T ss_pred CCEEhhhcChHHhh--hcEEEEecCchhch----hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 22221111000000 01122222211111 12221111 011234678899999996 68899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||++||+||+.+|++|||||||++||+.++..+.+.|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 137 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 137 AQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999874 899999999999999999999999753
No 337
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-35 Score=301.85 Aligned_cols=199 Identities=24% Similarity=0.347 Sum_probs=143.6
Q ss_pred CceEEeCCC----ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH
Q 040300 82 DTTHRYGPN----TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF 156 (605)
Q Consensus 82 ~~~~~yg~~----~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~ 156 (605)
+++++|+.. ...|++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+....
T Consensus 6 ~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~ 74 (288)
T PRK13643 6 KVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-----------GDIVVSSTS 74 (288)
T ss_pred EEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE-----------CCEECcccc
Confidence 345566532 12566666 46899999999999999999999999999999999852 222111000
Q ss_pred --HHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHH
Q 040300 157 --TRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQR 224 (605)
Q Consensus 157 --~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QR 224 (605)
...........+.+|..+. ..+..++.+. +.....+.++.++++.++|. .++++.+.+|||||+||
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~--~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 75 KQKEIKPVRKKVGVVFQFPES--QLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred ccccHHHHHhhEEEEecCcch--hcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 0000000011112221100 0011111111 11223456788999999996 58899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP 293 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~ 293 (605)
++||+||+.+|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+||+|++|.++.
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998779999999999999999999999997543
No 338
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-35 Score=301.87 Aligned_cols=199 Identities=23% Similarity=0.327 Sum_probs=142.8
Q ss_pred ceEEeCCC----ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH-
Q 040300 83 TTHRYGPN----TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF- 156 (605)
Q Consensus 83 ~~~~yg~~----~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~- 156 (605)
++++|+.. ...|++++ .+++||+++|+|+||||||||+++|+|+++|+.|++.. .|..+....
T Consensus 8 l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~~ 76 (290)
T PRK13634 8 VEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-----------GERVITAGKK 76 (290)
T ss_pred EEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-----------CCEECccccc
Confidence 45566531 23566666 46899999999999999999999999999999999852 222111000
Q ss_pred -HHHHHHHHHHhhcccccc-cc-hhhhhchhhh-----hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHH
Q 040300 157 -TRILEDNLKAIIKPQYVD-HI-PKAVQGNVGQ-----VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 157 -~~~~~~~~~~~~~~q~~~-~~-~~~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaI 227 (605)
.....-.-...+.+|... .+ +..+..++.. .+......+++.++++.++|. .++++++.+|||||+||++|
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 000000001111222110 00 0011111100 011223346788999999997 67899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||+|++|+++
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G 222 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999764 899999999999999999999999754
No 339
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=287.02 Aligned_cols=193 Identities=26% Similarity=0.418 Sum_probs=141.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++| +++|+|+||||||||+++|+|+++|+.|++.. .|.++.... ...
T Consensus 5 ~~~~~~~~~-~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~-~~~ 70 (211)
T cd03264 5 NLTKRYGKK-RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI-----------DGQDVLKQP-QKL 70 (211)
T ss_pred EEEEEECCE-EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEE-----------CCCccccch-HHH
Confidence 355666543 2455555 34689 99999999999999999999999999999852 222211110 000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.. ..++.+|.....+. .+...+.. . ....+..+++.++++.++|.+.+++.+.+|||||+||++||+||+.+
T Consensus 71 ~~--~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 71 RR--RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred Hh--heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 01 11222332221111 11111110 0 11122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999986 59999999999999999999999964
No 340
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=287.34 Aligned_cols=174 Identities=26% Similarity=0.323 Sum_probs=133.1
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... . ....++.+|.....+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~-----------~g~~~~~~~~--~--~~~i~~~~q~~~~~~~- 84 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI-----------NGVDVTAAPP--A--DRPVSMLFQENNLFAH- 84 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEcCcCCH--h--HccEEEEecccccCCC-
Confidence 4799999999999999999999999999999998752 1211111000 0 0011112222111111
Q ss_pred hhchhhhhc--------C-chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 040300 180 VQGNVGQVL--------D-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250 (605)
Q Consensus 180 ~~~~v~~~l--------~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~ 250 (605)
.++.+.+ . ....+.++.++++.++|.+.+++.+.+|||||+||++||+||+.+|++|||||||++||+.
T Consensus 85 --~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~ 162 (211)
T cd03298 85 --LTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162 (211)
T ss_pred --CcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0111111 0 1123456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 251 QRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 251 ~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++..+.+.|+++.++ +.|||+||||++++..+||++++|.+
T Consensus 163 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03298 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN 204 (211)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEEC
Confidence 999999999999764 89999999999999999999999974
No 341
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-35 Score=304.71 Aligned_cols=208 Identities=18% Similarity=0.261 Sum_probs=143.7
Q ss_pred ceEEeCCC----ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Chhhhhh------hhccc
Q 040300 83 TTHRYGPN----TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEILT------YFRGS 150 (605)
Q Consensus 83 ~~~~yg~~----~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~~~------~~~g~ 150 (605)
++++|+.. ...|.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.... +...... ...+.
T Consensus 8 l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (305)
T PRK13651 8 IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKL 87 (305)
T ss_pred EEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccccccccc
Confidence 45566432 12455565 4579999999999999999999999999999999975310 0000000 00000
Q ss_pred hhhhh--H--HHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc-hhhcccCCC
Q 040300 151 ELQNY--F--TRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN-QVIDRNVGD 216 (605)
Q Consensus 151 ~l~~~--~--~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~ 216 (605)
.+... . .....-.....+.+|..+. ..+..++.+. +......+++.++++.+||. +++++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~--~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 165 (305)
T PRK13651 88 VIQKTRFKKIKKIKEIRRRVGVVFQFAEY--QLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE 165 (305)
T ss_pred ccccccccccchHHHHHhceEEEeeCccc--ccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 00000 0 0000000111222332100 0011122221 11223456789999999996 789999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+|||+||+||+.+|++|||||||++||+..+..+.++|+++.+.|.|||+||||++++..+||+|++|..+
T Consensus 166 LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999877999999999999999999999999654
No 342
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=295.74 Aligned_cols=189 Identities=23% Similarity=0.339 Sum_probs=139.9
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++....
T Consensus 7 l~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~----- 69 (255)
T PRK11248 7 LYADYGGK-PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL-----------DGKPVEGPG----- 69 (255)
T ss_pred EEEEeCCe-eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEECCCCC-----
Confidence 45566542 3455555 35799999999999999999999999999999999852 111110000
Q ss_pred HHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
....+.+|.....+. .+..++.. . +.......++.++++.++|.+.+++++.+|||||+||++||+||+.+|
T Consensus 70 --~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 70 --AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred --CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 000111121111110 01111100 0 111223456889999999999899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++|||||||++||+..+..+.+.|+++.+ .|.|||+||||++++..+||++++|+
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999854 58999999999999999999999997
No 343
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-35 Score=312.72 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=154.6
Q ss_pred eEEEecCCcccCCCc----------------eEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC
Q 040300 69 AIQIINLPKDLDKDT----------------THRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL 131 (605)
Q Consensus 69 ai~i~nl~~~~~~~~----------------~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~ 131 (605)
+|++.||.+-|+.+. .+.||.. ..+++++ .+.+||+++|+|+||||||||+|+|+|+++|+.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLS-LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCe-EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 577777776655532 3455543 4567776 468999999999999999999999999999999
Q ss_pred ceeeCCCChhhhhhhhccchhhhhHHHHHHH--HHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhh
Q 040300 132 GRFNNPPDWQEILTYFRGSELQNYFTRILED--NLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTD 203 (605)
Q Consensus 132 G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~ 203 (605)
|+|. +.|.++..+....... .....+.+|.....+. .+..++.. . +.....++++.++++.
T Consensus 83 G~I~-----------i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~ 151 (400)
T PRK10070 83 GQVL-----------IDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQ 151 (400)
T ss_pred CEEE-----------ECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9984 2232222111000000 0011222332222221 11111110 0 1122334678899999
Q ss_pred cCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhh
Q 040300 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYL 282 (605)
Q Consensus 204 l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~ 282 (605)
+||.+.+++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+.++|+++.+ .++|||+||||++++..+
T Consensus 152 ~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 152 VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999975 489999999999999999
Q ss_pred cCEEEEEeCc
Q 040300 283 SDFICCLYGK 292 (605)
Q Consensus 283 ~D~i~vl~g~ 292 (605)
||+|++|.++
T Consensus 232 ~Dri~vL~~G 241 (400)
T PRK10070 232 GDRIAIMQNG 241 (400)
T ss_pred CCEEEEEECC
Confidence 9999999753
No 344
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=290.25 Aligned_cols=200 Identities=19% Similarity=0.279 Sum_probs=158.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC--------cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP--------EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~--------~~ 413 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ..
T Consensus 10 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 10 DLFYGE-NQALKSINLPIPAR-----QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EEEECC-eeeeecceEEecCC-----CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 667765 34689999998888 78999999999999999999999986 588765 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|++|+.... ..|+.+++...... .... ...+.++++.+++. +..++++.+|||||+|||+|||||+.
T Consensus 84 ~i~~~~q~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 84 KVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred heeEEecCCCcC-cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 599999987544 47998887532111 1111 12345677778764 46788999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|++|||||||+|||+.++..+.++|+++.+ +.|||+||||++++..+|||+++|+++... ..++++++..
T Consensus 163 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~--~~g~~~~~~~ 233 (249)
T PRK14253 163 EPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELV--EHDDTQVIFS 233 (249)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEE--EeCCHHHHHc
Confidence 9999999999999999999999999999853 589999999999999999999999865532 4466666643
No 345
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-35 Score=299.37 Aligned_cols=196 Identities=26% Similarity=0.295 Sum_probs=140.6
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhh--hhHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ--NYFTRI 159 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~--~~~~~~ 159 (605)
++++|+.. ..+.+++ .+.+||+++|+|+||||||||+|+|+|+++|+.|++... |..+. ......
T Consensus 7 l~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-----------g~~i~~~~~~~~~ 74 (271)
T PRK13638 7 LWFRYQDE-PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQ-----------GKPLDYSKRGLLA 74 (271)
T ss_pred EEEEcCCc-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEEC-----------CEEcccccCCHHH
Confidence 45566532 2455555 357999999999999999999999999999999988421 11110 000000
Q ss_pred HHHHHHHhhccccccc-ch-hhhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 160 LEDNLKAIIKPQYVDH-IP-KAVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~-~~-~~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
.. -..++.+|.... .. ..+..++.. . ........++.++++.+++.+..++++.+|||||+||++||+||+
T Consensus 75 ~~--~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LR--QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HH--hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 00 001111221100 00 000001100 0 111223456788999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|++|||||||++||+..+..+.++|+++.++|.|||+||||++++..+||++++|..+
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG 212 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999867899999999999999999999999653
No 346
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=300.94 Aligned_cols=189 Identities=24% Similarity=0.348 Sum_probs=137.3
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH--HHHHHHHHHHhhc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF--TRILEDNLKAIIK 169 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~--~~~~~~~~~~~~~ 169 (605)
.+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++... |..+.... ...........+.
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~-----------g~~~~~~~~~~~~~~~~~~ig~v 90 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIA-----------GYHITPETGNKNLKKLRKKVSLV 90 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC-----------CEECccccccchHHHHHhceEEE
Confidence 455555 458999999999999999999999999999999988521 11110000 0000000001111
Q ss_pred ccccc--cchhhhhchhh---h--hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 170 PQYVD--HIPKAVQGNVG---Q--VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 170 ~q~~~--~~~~~~~~~v~---~--~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
+|... ..+..+...+. . ........+++.++++.+||+ .+.++++.+|||||+||++||+||+.+|++||||
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD 170 (287)
T PRK13641 91 FQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170 (287)
T ss_pred EeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 11100 00000011110 0 011223455788999999997 6899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||++||+..+..+.++|+++.+.|.|||+||||++++..+||++++|+.+
T Consensus 171 EPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999767999999999999999999999999753
No 347
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.9e-34 Score=319.73 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=160.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ...++
T Consensus 8 ~~~~~~-~~il~~isl~i~~G-----e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 8 VKTFGG-VKALDGIDLEVRPG-----ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEeCC-eEeecceEEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 677765 34789999999988 68999999999999999999999987 789875 22211 13599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-----CCC---CHHHHHHHHhhcCCchhh-ccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-----SYT---HPQFVSDVMKPLLIEQLM-DQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-----~~~---~~~~~~~~l~~l~l~~~~-~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
|+||+.......|+.+++...... ... ....+.++++.+++.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 999987655567999887532110 011 123467889999998654 67899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+|||||||+|||+.++..+.++|+++.+ .|.|||+||||++++..+||||++|+.+.. ...++++++
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i--~~~~~~~~~ 228 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQH--VATKDMSTM 228 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeE--eeecCcccC
Confidence 9999999999999999999999999854 589999999999999999999999985443 233444443
No 348
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.4e-35 Score=309.95 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=143.6
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHH--HHHHhhc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED--NLKAIIK 169 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~--~~~~~~~ 169 (605)
.+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|.++..+....+.. .....+.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~-----------i~G~~i~~~~~~~~~~~rr~~i~~v 76 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF-----------IDGENIMKQSPVELREVRRKKIGMV 76 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE-----------ECCEECCcCCHHHHHHHHhCcEEEE
Confidence 455555 3579999999999999999999999999999999984 2333322211100000 1122334
Q ss_pred ccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 040300 170 PQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243 (605)
Q Consensus 170 ~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP 243 (605)
+|.....|. .+..++.. . .......+++.++++.+||+++.++++.+|||||+|||+|||||+.+|++||||||
T Consensus 77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 444333332 22222211 1 11223456789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 244 SSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 244 ts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++||+..+.++.+.|.++.++ ++|||+||||++++..+||+|++|+++
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999764 899999999999999999999999753
No 349
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=289.40 Aligned_cols=201 Identities=20% Similarity=0.290 Sum_probs=158.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+.+ | ++|++. +.... .
T Consensus 12 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 12 HLFYGK-FEALKGIDLDFNQN-----EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred EEEECC-eeEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 677875 34689999998888 7899999999999999999999975 5 478874 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... ..... ...+.+.++.+++ .+..++++.+|||||+|||+|||||+
T Consensus 86 ~~i~~~~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 86 KQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred CeEEEEECCCccC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 3599999986543 3699887753211 11111 1234556777765 35678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++.. +.|+|+||||++++..+|||+++|+++.. ...+++.+++..
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 237 (252)
T PRK14255 165 VKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNL--IEFADTKQMFLN 237 (252)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999999999999853 58999999999999999999999986554 345777776543
No 350
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-34 Score=284.98 Aligned_cols=193 Identities=26% Similarity=0.361 Sum_probs=140.4
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+.......
T Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~ 69 (206)
T TIGR03608 2 KNISKKFGDK-IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL-----------NGKETPPLNSKK 69 (206)
T ss_pred cceEEEECCE-EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-----------CCEEccccchhh
Confidence 3567777643 3566666 45799999999999999999999999999999998742 122110000000
Q ss_pred HHH--HHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHH
Q 040300 160 LED--NLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 160 ~~~--~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA 228 (605)
... .-..++.+|.....+. .++.+.+ ......+++.++++.++|.+.+++.+.+|||||+||++||
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~---~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIEN---ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred HHHHHHhCeeEEecchhhccC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHH
Confidence 000 0011111221111110 1121111 1122345788899999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+||+.+|++|||||||++||+.++..+.++|+++.+++.|||++||+++++. +||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999999999999877899999999999775 79999875
No 351
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.3e-34 Score=304.88 Aligned_cols=180 Identities=26% Similarity=0.314 Sum_probs=150.7
Q ss_pred EEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC---HHH
Q 040300 379 MLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH---PQF 447 (605)
Q Consensus 379 i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~---~~~ 447 (605)
|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+......+|+.+++...... .... ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999875 22221 23599999997665567999987543211 1111 235
Q ss_pred HHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 040300 448 VSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527 (605)
Q Consensus 448 ~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD 527 (605)
+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++.|.|+|+||||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999876668999999999
Q ss_pred HHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 528 FIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 528 ~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++++..+|||+++|+++.. ...++|++++..
T Consensus 161 ~~e~~~~~d~i~vl~~G~i--~~~g~~~~~~~~ 191 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKI--AQIGTPEEIYEE 191 (325)
T ss_pred HHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999986543 345788887654
No 352
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-34 Score=293.78 Aligned_cols=203 Identities=20% Similarity=0.286 Sum_probs=158.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~-----~----~ 412 (605)
.+.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+ . .
T Consensus 27 ~~~~~~~-~~l~~vs~~i~~G-----e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 27 KVFYGGF-LALVDVHLKIPAK-----KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EEEeCCe-EEEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 7778753 4689999999888 78999999999999999999999863 578764 2221 0 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC--CHHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT--HPQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~--~~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+.... ..|+.+++...... .+. ....+.++++.+++ .+.+++++.+|||||+|||+|||||+.+
T Consensus 101 ~~i~~v~q~~~l~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 101 RQVGMVFQRPNPF-PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred hcEEEEccCCccc-cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 3699999986543 45898877432111 111 12334566777776 3567899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-------CcceeeecCChhhhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-------QPSVDCVANAPQSLL 558 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-------~~~~~~~~~~p~~~~ 558 (605)
|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+|||+++|++ ..+.....+++++++
T Consensus 180 p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 180 PDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999999999999999999999999984 3 68999999999999999999999962 112234567888776
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
..
T Consensus 258 ~~ 259 (274)
T PRK14265 258 GS 259 (274)
T ss_pred hC
Confidence 53
No 353
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=294.86 Aligned_cols=204 Identities=18% Similarity=0.266 Sum_probs=162.4
Q ss_pred hhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC------
Q 040300 345 ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP------ 411 (605)
Q Consensus 345 ~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~------ 411 (605)
++. +++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+.
T Consensus 25 ~nl-~~~~~~-~~il~~vs~~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 25 VNL-TLGFAG-KTVLDQVSMGFPAR-----AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred eeE-EEEECC-EEEeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 344 788875 34689999999888 78999999999999999999999986 688875 21111
Q ss_pred --cceeEeecCcCCCCCcCcHHHHHHhhhcc-C-CCC---HHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHH
Q 040300 412 --EFNVSYKPQKISPKFQSTVRHLLHQKIRD-S-YTH---PQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 412 --~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~-~~~---~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~ 480 (605)
...++|++|+... +..|+.+++...... . ... ...+.++++.+++.. .+++.+.+|||||+|||+|||
T Consensus 98 ~~~~~i~~v~q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 98 EFRRRVGMLFQRPNP-FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHhhheEEeccCCcc-CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 2358999998654 347999877532111 1 111 123456788888863 467889999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~ 252 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRL--VEEGPTEQLFSS 252 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 99999999999999999999999999999999853 48999999999999999999999986543 345778877654
No 354
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-34 Score=309.86 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=148.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||+++|+|+|||||||||++|+|+++|+.|+|..
T Consensus 14 ~L~l~~l~--------~~~~~~-~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~----------- 73 (375)
T PRK09452 14 LVELRGIS--------KSFDGK-EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML----------- 73 (375)
T ss_pred eEEEEEEE--------EEECCe-EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-----------
Confidence 46666654 456532 1344444 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhhc-----CchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQVL-----DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~l-----~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+..... ......+.+|.....|. .+..++...+ ......+++.++++.++|++++++++.+|||||
T Consensus 74 ~g~~i~~~~~----~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq 149 (375)
T PRK09452 74 DGQDITHVPA----ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQ 149 (375)
T ss_pred CCEECCCCCH----HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 2222211000 00111222332222222 1111221111 122335678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||+|||||+.+|++||||||||+||+..|..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G 221 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999875 899999999999999999999999753
No 355
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-34 Score=287.46 Aligned_cols=192 Identities=31% Similarity=0.404 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--R 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~ 158 (605)
+++++|+.. .+ +++ .+.+ |+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 5 ~l~~~~~~~--~~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDF--TL-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-----------NGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCe--ee-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEecccccchhh
Confidence 466777653 23 555 3578 999999999999999999999999999998742 2222110000 0
Q ss_pred HHHHHHHHhhcccccccchhhhhchhhhhc-------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.....-..++.+|.....+. .++.+.+ .....++++.++++.+++.+..++++.+|||||+||++||+||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~---~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 70 LPPQQRKIGLVFQQYALFPH---LNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hhhHhhcEEEEecCCccCCC---CCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 00000011222332211111 0121111 1122345678899999999989999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|++++++ |.|||++|||++++..+||++++|..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED 207 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999875 89999999999999999999999964
No 356
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2e-34 Score=268.53 Aligned_cols=194 Identities=26% Similarity=0.412 Sum_probs=148.5
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC--------CChhhhhhhhccchh
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP--------PDWQEILTYFRGSEL 152 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~--------~~~~~~~~~~~g~~l 152 (605)
+++.+.|+.-.|.++ +. +..||+++|+||+|||||||+++|+|.+.|.+|.+... |.-..+...|....
T Consensus 5 ~~V~~~y~~~~~~fd-l~-v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN- 81 (231)
T COG3840 5 DDVRFSYGHLPMRFD-LT-VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN- 81 (231)
T ss_pred cceEEeeCcceEEEE-Ee-ecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccc-
Confidence 357888987755442 22 35899999999999999999999999999999987421 11111111122111
Q ss_pred hhhHHHH-HHHHHHHhhcccccccchhhhhchhhhhcC-chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 153 QNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 153 ~~~~~~~-~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.|..+ ++.++.....|. ++ ...++++++.++..+||..+++|.+.+|||||||||||||+
T Consensus 82 --LFaHLtV~qNigLGl~P~----------------LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc 143 (231)
T COG3840 82 --LFAHLTVAQNIGLGLSPG----------------LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC 143 (231)
T ss_pred --cchhhhhhhhhcccCCcc----------------cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence 11111 122222211111 11 24567889999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCcccc
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGA 295 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~ 295 (605)
|+++-.|++||||+|.|||.-|.++..++.++..+ +.|++||||.++.+..++|++++++.+..+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE
Confidence 99999999999999999999999999999999865 899999999999999999999999754433
No 357
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=298.81 Aligned_cols=195 Identities=25% Similarity=0.326 Sum_probs=142.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++.........
T Consensus 9 l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~~ 77 (277)
T PRK13652 9 LCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI-----------RGEPITKENIREVR 77 (277)
T ss_pred EEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEECCcCCHHHHH
Confidence 4556643333566666 45799999999999999999999999999999999852 22211110000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
. ...+.+|.... ..+..++.+. +.....++++.++++.++|.+.+++.+.+|||||+||++||+||+
T Consensus 78 ~--~i~~v~q~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 78 K--FVGLVFQNPDD--QIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred h--heEEEecCccc--ccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 0 01111121100 0000111111 112223456789999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|+.+
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999875 899999999999999999999999643
No 358
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.1e-34 Score=273.70 Aligned_cols=157 Identities=25% Similarity=0.281 Sum_probs=133.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
.+.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|+... +..
T Consensus 7 ~~~~~~~~~~l~~i~l~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~--~~~~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 7 SLATPDGRVLLKDLSFEIKPG-----DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM--PEGEDLLFLPQRPYL-PLG 78 (166)
T ss_pred EEEcCCCCeeeecCeEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE--CCCceEEEECCCCcc-ccc
Confidence 667754334688999999888 789999999999999999999999999999751 112579999998653 456
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~ 508 (605)
|+.+++... .+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 79 tv~~nl~~~--------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 79 TLREQLIYP--------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred cHHHHhhcc--------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 888876321 468999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+|+++ +.|+|+||||.+++ .+|||+++|+++
T Consensus 133 ~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 133 LLKEL----GITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred HHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 99885 58999999999876 589999999854
No 359
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=299.03 Aligned_cols=201 Identities=23% Similarity=0.306 Sum_probs=147.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.....+++++ .+++||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~~~~l--------~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i----------- 65 (283)
T PRK13636 5 ILKVEEL--------NYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF----------- 65 (283)
T ss_pred eEEEEeE--------EEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEE-----------
Confidence 5666665 456643223556666 45799999999999999999999999999999999852
Q ss_pred ccchhh--hhHHHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 148 RGSELQ--NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 148 ~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|..+. ........ -...+.+|.... ..+..++.+. +......+++.++++.+||.+..++++.+
T Consensus 66 ~g~~~~~~~~~~~~~~--~~ig~v~q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 66 DGKPIDYSRKGLMKLR--ESVGMVFQDPDN--QLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred CCEECCCCcchHHHHH--hhEEEEecCcch--hhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCccc
Confidence 222110 00000000 011122222100 0001112111 11223346788999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|..+
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999865 899999999999999999999999643
No 360
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=299.35 Aligned_cols=189 Identities=21% Similarity=0.349 Sum_probs=138.2
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--HHHHHHHHHhhc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--RILEDNLKAIIK 169 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~ 169 (605)
.|++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+..... ....-....++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~-----------~g~~i~~~~~~~~~~~~~~~ig~v 90 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV-----------DDITITHKTKDKYIRPVRKRIGMV 90 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-----------CCEECccccccchHHHHHhheEEE
Confidence 566666 46899999999999999999999999999999998842 2221110000 000000011122
Q ss_pred ccccc--cchhhhhchhhh-----hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 170 PQYVD--HIPKAVQGNVGQ-----VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 170 ~q~~~--~~~~~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
+|... ..+..+...+.. .+......+++.++++.+||. +..++.+.+|||||+||++||+||+.+|++||||
T Consensus 91 ~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD 170 (286)
T PRK13646 91 FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170 (286)
T ss_pred ecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 22110 001011111100 012223456788999999997 7889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||++||+.++..+.++|+++.+ .|.|||+||||++++..+||+|++|+.+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999975 4899999999999999999999999754
No 361
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=298.33 Aligned_cols=199 Identities=25% Similarity=0.370 Sum_probs=145.8
Q ss_pred eEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|+.+ +|+.. ...|.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~~--------~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~--------- 66 (279)
T PRK13650 4 IIEVKNLTF--------KYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII--------- 66 (279)
T ss_pred eEEEEeEEE--------EcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE---------
Confidence 577777654 55421 23455565 45799999999999999999999999999999998842
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|..+......... -...+.+|... .++ ..++.+. +......+++.++++.+||++..++.+.
T Consensus 67 --~g~~i~~~~~~~~~--~~i~~v~q~~~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (279)
T PRK13650 67 --DGDLLTEENVWDIR--HKIGMVFQNPDNQFV---GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA 139 (279)
T ss_pred --CCEECCcCcHHHHH--hhceEEEcChHHhcc---cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 22221110000000 01112222110 011 0112111 1122345678899999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++. .||+|++|+++
T Consensus 140 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G 216 (279)
T PRK13650 140 RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNG 216 (279)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999875 999999999999995 79999999754
No 362
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.8e-34 Score=290.17 Aligned_cols=201 Identities=24% Similarity=0.357 Sum_probs=143.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+.+ +|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++...
T Consensus 2 ~i~~~~l~~--------~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~---------- 62 (242)
T TIGR03411 2 ILYLEGLSV--------SFDGF-KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG---------- 62 (242)
T ss_pred eEEEEeeEE--------EcCCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC----------
Confidence 466666544 55432 2344554 357999999999999999999999999999999988522
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh----------hc---CchHHHHHHHHHHhhcCCchhhccc
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----------VL---DQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----------~l---~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
|..+......... .....+.+|.....+. .+...+.. .+ .....+.++.++++.+|+.+..++.
T Consensus 63 -g~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (242)
T TIGR03411 63 -GTDLTGLPEHQIA-RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL 140 (242)
T ss_pred -CeecCCCCHHHHH-hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC
Confidence 1111100000000 0001112222111111 00000000 00 0122355788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ ++|||+||||++++..+||++++|+.
T Consensus 141 ~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999976 79999999999999999999999964
No 363
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-34 Score=293.39 Aligned_cols=200 Identities=18% Similarity=0.260 Sum_probs=160.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +.... .
T Consensus 32 ~~~~~~~-~il~~vs~~i~~G-----e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~ 105 (272)
T PRK14236 32 NLFYGDK-QALFDISMRIPKN-----RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELR 105 (272)
T ss_pred EEEECCe-eEeeeEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHh
Confidence 7777653 4689999998888 78999999999999999999999874 789875 21111 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... ..... ...+.++++.+++. ...++.+.+|||||+|||+|||||+
T Consensus 106 ~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 106 RRVGMVFQRPNPF-PKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred ccEEEEecCCccC-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 3689999986543 4599888753211 11111 23466778888885 3678899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|++|||||||+|||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+++.. ...+++.++.+
T Consensus 185 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 256 (272)
T PRK14236 185 IEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNMQQAARVSDYTAFMYMGKL--VEYGDTDTLFT 256 (272)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCHHHHHhhCCEEEEEECCEE--EecCCHHHHhc
Confidence 9999999999999999999999999999985 3 68999999999999999999999986543 34577777654
No 364
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-34 Score=293.62 Aligned_cols=195 Identities=28% Similarity=0.403 Sum_probs=142.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+.+++ .+++|++++|+|+||||||||+++|+|+++|+.|++... |.++..+......
T Consensus 8 l~~~~~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~~~~ 75 (255)
T PRK11231 8 LTVGYGTK-RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG-----------DKPISMLSSRQLA 75 (255)
T ss_pred EEEEECCE-EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEEC-----------CEEhHHCCHHHHh
Confidence 45567643 3466666 458999999999999999999999999999999987521 2111110000000
Q ss_pred HHHHHhhcccccccchh-hhhchhh-------hhcC--chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVG-------QVLD--QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~-------~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
. ..++.+|.....+. .+...+. ..+. ......++.++++.++|.+.+++.+.+|||||+||++||+||
T Consensus 76 ~--~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 R--RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred h--heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 0 11122222111110 0000000 0011 122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||++++|++
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 213 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLAN 213 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999977789999999999999999999999964
No 365
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.2e-34 Score=283.81 Aligned_cols=185 Identities=21% Similarity=0.328 Sum_probs=147.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------Cccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i 415 (605)
.+.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....+
T Consensus 7 ~~~~~~~~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 7 YFSWGSGLATLSNINIRIPTG-----QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred EEecCCCCcceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 677874445789999999888 78999999999999999999999999999875 1111 01358
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-----------hccCcCcCChhHHHHHHHHHHHcc
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-----------MDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+|++|+... +..|+.+++..... . ......++++.+++.+. +++++.+|||||+|||+|||||+.
T Consensus 82 ~~~~q~~~~-~~~t~~~nl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPWL-LNATVEENITFGSP--F-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCcc-ccccHHHHHhhcCc--C-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 999998754 46799888753211 1 22334556666666543 346789999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAK--VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~--~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+|++|||||||++||+.++..+++ +++.+ .+.+.|+|++|||++++. .||++++++++
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEecCC
Confidence 999999999999999999999998 66665 456899999999999986 59999999753
No 366
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.3e-34 Score=288.14 Aligned_cols=198 Identities=24% Similarity=0.387 Sum_probs=152.0
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 7 ~~~~~~~~~~~~l~~i~~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 7 SFRYPSRPDVPILKGLSLTIPPG-----KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEecCCCCCccceeceEEEecCC-----CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence 5666531 23688999998888 78999999999999999999999999999875 22111 135999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhh---------c--CCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKP---------L--LIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~---------l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
++|+... +..|+.+++...... .......+.++. + ++....++++.+|||||+|||+|||||+.+|
T Consensus 82 ~~q~~~~-~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 82 VSQEPVL-FDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred ECCchhh-hhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 9998654 346898887432111 111122222222 2 4444567788999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|||||||++||+.++..+++.|+++. .|.|||++|||++++. +||++++|+++.. ...++++++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i--~~~~~~~~~~~ 226 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQV--VEQGTHDELMA 226 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEE--EEeCCHHHHhh
Confidence 9999999999999999999999999984 5899999999999997 7999999986543 34466666544
No 367
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.6e-34 Score=301.32 Aligned_cols=192 Identities=21% Similarity=0.361 Sum_probs=144.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+...... .
T Consensus 7 ~l~~~~~~~-~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i-----------~g~~~~~~~~~-~ 73 (301)
T TIGR03522 7 SLTKLYGTQ-NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV-----------CGEDVLQNPKE-V 73 (301)
T ss_pred EEEEEECCE-EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEcccChHH-H
Confidence 355677643 3566666 46899999999999999999999999999999999852 22221110000 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-..++.+|.....+.. ++.+.+ ......++++++++.+||.+..++.+.+|||||+||++||+||
T Consensus 74 --~~~ig~~~q~~~l~~~~---tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 74 --QRNIGYLPEHNPLYLDM---YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred --HhceEEecCCCCCCCCC---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 00112223321111110 121111 1122345788999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++||+.++.++++.|+++.+ ++|||++||+++++..+||+|++|+.+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999965 799999999999999999999999653
No 368
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-34 Score=286.99 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=152.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
.++|++....+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +..+. ...++|++
T Consensus 7 ~~~~~~~~~~l~~i~~~i~~G-----e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 7 TFAYDPGRPVLKDVSFTIPAG-----KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred EEEeCCCCceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 566753234688999998888 78999999999999999999999999999875 22211 13489999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhh---------c--CCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKP---------L--LIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~---------l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|+... +..|+.+++...... . ......+.++. + ++....++++.+|||||+|||+|||||+.+|++
T Consensus 82 q~~~~-~~~tv~~nl~~~~~~-~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 82 QDTVL-FNDTIGYNIRYGRPD-A-TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred CCChh-hcchHHHHHhhcCCC-C-CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99654 467999887432111 1 11222222232 2 444556677899999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||||||+|||+.++..+.++|+++. + |.|||++|||.+++.. |||+++|+.+.. ...++++++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i--~~~~~~~~~~~ 224 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRI--VERGTHEELLA 224 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEEEEECCEE--EeeCCHHHHhh
Confidence 99999999999999999999999984 4 8999999999999975 999999986543 34466666544
No 369
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=290.19 Aligned_cols=195 Identities=26% Similarity=0.348 Sum_probs=143.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhh------hh
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ------NY 155 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~------~~ 155 (605)
++++|+.. -.+++++ .+.+||+++|+|+||||||||+|+|+|+++|+.|++.. .|.++. ..
T Consensus 8 l~~~~~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (242)
T PRK11124 8 INCFYGAH-QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI-----------AGNHFDFSKTPSDK 75 (242)
T ss_pred eEEEECCe-eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEecccccccchh
Confidence 45566543 3466666 46899999999999999999999999999999999852 222110 00
Q ss_pred HHHHHHHHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHH
Q 040300 156 FTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 156 ~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA 228 (605)
..... ....++.+|.....+. .+..++.. . ........++.++++.+|+.+.+++.+.+|||||+||++||
T Consensus 76 ~~~~~--~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIREL--RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHH--HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 00000 0112233333222211 11111110 0 01122345678899999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||+.+|++|||||||++||+.++..+.+.|+++.+.++|||+||||++++..+||++++|..
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999976799999999999999999999999964
No 370
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=297.15 Aligned_cols=196 Identities=23% Similarity=0.314 Sum_probs=141.9
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.....+++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+.........
T Consensus 7 l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (275)
T PRK13639 7 LKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI-----------KGEPIKYDKKSLLE 75 (275)
T ss_pred EEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE-----------CCEECccccchHHH
Confidence 4556653223455555 45899999999999999999999999999999999852 22111000000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
-.-..++.+|.... ..+..++.+. ......++++.++++.++|.+++++++.+|||||+||++||+||+
T Consensus 76 ~~~~i~~v~q~~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 76 VRKTVGIVFQNPDD--QLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHhheEEEeeChhh--hhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 00001111221100 0000111111 111223456888999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|+.
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~ 212 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSD 212 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999987799999999999999999999999964
No 371
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=7.9e-34 Score=288.63 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=155.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+ ++|++|++. +.... ...++
T Consensus 14 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (252)
T CHL00131 14 HASVNEN-EILKGLNLSINKG-----EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIF 87 (252)
T ss_pred EEEeCCE-EeeecceeEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEE
Confidence 6777653 4788999998888 78999999999999999999998 579999875 21111 12478
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-----CCC--C----HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-----SYT--H----PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-----~~~--~----~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......++.+++...... ... . ...+.++++.+++. ...++++. +|||||+|||+|||||+
T Consensus 88 ~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 167 (252)
T CHL00131 88 LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL 167 (252)
T ss_pred EEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHH
Confidence 899986544445777765321110 000 1 13456789999997 57888887 59999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQ 555 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~ 555 (605)
.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+ |||+++|+++.. ...++++
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i--~~~~~~~ 237 (252)
T CHL00131 168 LDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKI--IKTGDAE 237 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEE--EEecChh
Confidence 99999999999999999999999999999864 589999999999999887 899999986543 3445655
No 372
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=302.54 Aligned_cols=187 Identities=20% Similarity=0.292 Sum_probs=138.8
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhh-----------H---H
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY-----------F---T 157 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~-----------~---~ 157 (605)
.|.+++ .+.+||++||+|+||||||||+++|+|+++|+.|+|... |..+... . .
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~-----------g~~~~~~~~~~~~~~~~~~~~~~ 109 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVG-----------DIYIGDKKNNHELITNPYSKKIK 109 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC-----------CEEcccccccccccccccccccc
Confidence 466666 457999999999999999999999999999999998521 1111000 0 0
Q ss_pred HHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHH
Q 040300 158 RILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 158 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaI 227 (605)
....-.-...+.+|..+. ..+..++.+. .......+++.++++.+||. +.+++.+.+|||||+||++|
T Consensus 110 ~~~~~~~~ig~v~Q~~~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvai 187 (320)
T PRK13631 110 NFKELRRRVSMVFQFPEY--QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAI 187 (320)
T ss_pred hHHHHHhcEEEEEECchh--ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHH
Confidence 000000011222222100 0111122211 11223456788999999997 68999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+++|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+||+|++|..+
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999777999999999999999999999999754
No 373
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.1e-34 Score=288.10 Aligned_cols=187 Identities=20% Similarity=0.381 Sum_probs=150.5
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 18 ~~~~~~~~~~~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 92 (226)
T cd03248 18 TFAYPTRPDTLVLQDVSFTLHPG-----EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSL 92 (226)
T ss_pred EEEeCCCCCCccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEE
Confidence 6777642 23688999999888 78999999999999999999999999999875 22111 235899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccC-CCC--H----HHHHHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDS-YTH--P----QFVSDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~-~~~--~----~~~~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
++|+... +..|+.+++....... ... . ..+.++++.+ ++....++++.+|||||+|||+|||||+.+|++
T Consensus 93 ~~q~~~l-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l 171 (226)
T cd03248 93 VGQEPVL-FARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV 171 (226)
T ss_pred EecccHH-HhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9998643 4568988874321110 000 0 1134667777 788888999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||++||+.++..+.++|+++. + +.|+|+||||++++.. |||+++++++
T Consensus 172 lllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g 224 (226)
T cd03248 172 LILDEATSALDAESEQQVQQALYDWP-E-RRTVLVIAHRLSTVER-ADQILVLDGG 224 (226)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHh-CCEEEEecCC
Confidence 99999999999999999999999974 3 6899999999999965 9999999754
No 374
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.4e-34 Score=277.96 Aligned_cols=168 Identities=33% Similarity=0.519 Sum_probs=135.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|.++..+.....
T Consensus 4 ~l~~~~~~~-~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~-----------~~g~~~~~~~~~~~ 71 (180)
T cd03214 4 NLSVGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL-----------LDGKDLASLSPKEL 71 (180)
T ss_pred EEEEEECCe-eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----------ECCEECCcCCHHHH
Confidence 567777652 3566666 4689999999999999999999999999999999984 23332221100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
... . .| +.++++.+++.+.+++.+.+|||||+||++|||||+.+|++|||
T Consensus 72 ~~~--i----~~------------------------~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 72 ARK--I----AY------------------------VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HHH--H----hH------------------------HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 0 00 11177889999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||++||+.++..+.+.|+++.++ +.|+|++||+++++..+||++++|..
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~ 173 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKD 173 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999776 89999999999999999999999974
No 375
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=298.70 Aligned_cols=202 Identities=19% Similarity=0.297 Sum_probs=162.9
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP--------- 411 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~--------- 411 (605)
+++|++ ....+++++|++.+| |++||+|+||||||||+++|+|+.+ |++|++. +..+.
T Consensus 87 s~~y~~~~~~~L~~is~~I~~G-----e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l 161 (329)
T PRK14257 87 NFWYMNRTKHVLHDLNLDIKRN-----KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL 161 (329)
T ss_pred EEEecCCCceeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh
Confidence 777753 234689999998888 7899999999999999999999986 5789875 22221
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCCH----HHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHH
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTHP----QFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~~----~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...++|+||++.. +..|+++++..... ...... ..+..+++.+++. ...++++.+|||||||||+|||||
T Consensus 162 r~~i~~v~q~~~~-~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl 240 (329)
T PRK14257 162 RTRIGMVFQKPTP-FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAI 240 (329)
T ss_pred hccEEEEecCCcc-CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2369999998754 56899998853211 112112 1246677887763 456889999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+|||+++++..+||||++|+++.. ...++|+++++.
T Consensus 241 ~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i--~e~g~~~~l~~~ 314 (329)
T PRK14257 241 ALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWI--EEAGETKTIFIH 314 (329)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999999999999999853 68999999999999999999999997544 456999998764
No 376
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-34 Score=281.41 Aligned_cols=182 Identities=21% Similarity=0.277 Sum_probs=151.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|++|
T Consensus 8 ~~~~~~~-~il~~~s~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 8 DFDYHDQ-PLLQQISFHLPAG-----GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEeCCe-eEEeeeeEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 6677653 4789999999888 78999999999999999999999999999875 22211 135899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
.....+..|+.+++...... ......+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHF-SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred ccccCcCCCHHHHHHHHHhc-CcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 86655568999987542211 11234578899999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi 539 (605)
.++..+.++|+++.+ .+.|+|+||||..++.. ||.-.
T Consensus 161 ~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 161 LSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence 999999999999854 58999999999998865 77644
No 377
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.5e-34 Score=287.66 Aligned_cols=198 Identities=26% Similarity=0.376 Sum_probs=138.4
Q ss_pred ceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+... ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+..+...
T Consensus 7 v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~ 75 (228)
T cd03257 7 LSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF-----------DGKDLLKLSRR 75 (228)
T ss_pred eeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEccccchh
Confidence 455665331 3456666 46899999999999999999999999999999998852 12211110000
Q ss_pred -HHHHHHHHhhcccccc--cchh-hhhchhhh---hc--Cch-HHHHH-HHHHHhhcCCc-hhhcccCCCCChHHHHHHH
Q 040300 159 -ILEDNLKAIIKPQYVD--HIPK-AVQGNVGQ---VL--DQK-DERDM-KADLCTDLDLN-QVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 159 -~~~~~~~~~~~~q~~~--~~~~-~~~~~v~~---~l--~~~-~~~~~-~~~~l~~l~L~-~~~dr~v~~LSGGe~QRva 226 (605)
.....-..++.+|... ..+. .+..++.. .. ... ..... +.++++.+++. ..+++.+.+|||||+||++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHH
Confidence 0000000111122110 0000 00111100 00 011 11122 35788999995 6889999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|.+
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC
Confidence 999999999999999999999999999999999999875 89999999999999999999999974
No 378
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=290.07 Aligned_cols=203 Identities=19% Similarity=0.284 Sum_probs=146.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++..
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~----------- 62 (241)
T PRK10895 3 TLTAKNL--------AKAYKGR-RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII----------- 62 (241)
T ss_pred eEEEeCc--------EEEeCCE-EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 4666655 4566532 3455665 45899999999999999999999999999999998852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
.|..+..+..... ......+.+|.....+. .+..++.. . ......+.++.++++.+++.+..++++.+||||
T Consensus 63 ~g~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 141 (241)
T PRK10895 63 DDEDISLLPLHAR-ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGG 141 (241)
T ss_pred CCEECCCCCHHHH-HHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHH
Confidence 1211111000000 00011222222111110 11111100 0 111223456888999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||++||+||+.+|++|||||||++||+.++..+.+.|+++.++|.|||++|||++++..+||++++|..+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999999999999999999643
No 379
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=303.41 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=146.3
Q ss_pred eEEEecCCcccCCCceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC----CCceeeCCCCh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP----NLGRFNNPPDW 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p----~~G~i~~~~~~ 140 (605)
.|+|.||.+ .|+.. .-.|++++ .+.+||++||+|+||||||||+++|+|+++| +.|++.
T Consensus 3 ~L~v~~l~~--------~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~----- 69 (326)
T PRK11022 3 LLNVDKLSV--------HFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE----- 69 (326)
T ss_pred eEEEeCeEE--------EECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE-----
Confidence 467776654 55432 12466666 4689999999999999999999999999974 778874
Q ss_pred hhhhhhhccchhhhhHHHHHHHHH--HHhhcccccc--cchhh-hhchhhhh------cCchHHHHHHHHHHhhcCCc--
Q 040300 141 QEILTYFRGSELQNYFTRILEDNL--KAIIKPQYVD--HIPKA-VQGNVGQV------LDQKDERDMKADLCTDLDLN-- 207 (605)
Q Consensus 141 ~~~~~~~~g~~l~~~~~~~~~~~~--~~~~~~q~~~--~~~~~-~~~~v~~~------l~~~~~~~~~~~~l~~l~L~-- 207 (605)
+.|.++............ ...+.+|... ..|.. +...+.+. ......++++.++++.+||.
T Consensus 70 ------~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~ 143 (326)
T PRK11022 70 ------FNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP 143 (326)
T ss_pred ------ECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 233322211110000000 0122222210 11111 00111111 11233456789999999996
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~ 285 (605)
..+++++.+|||||+|||+||+||+.+|++||+||||++||+..+..++++|+++.+ .|.|+|+||||++++.++||+
T Consensus 144 ~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 144 ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred HHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 367999999999999999999999999999999999999999999999999999986 489999999999999999999
Q ss_pred EEEEeCc
Q 040300 286 ICCLYGK 292 (605)
Q Consensus 286 i~vl~g~ 292 (605)
|++||.+
T Consensus 224 i~vm~~G 230 (326)
T PRK11022 224 IIVMYAG 230 (326)
T ss_pred EEEEECC
Confidence 9999854
No 380
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.6e-34 Score=289.49 Aligned_cols=193 Identities=26% Similarity=0.364 Sum_probs=140.3
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++........
T Consensus 7 l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~i~~~~~~~~- 73 (236)
T TIGR03864 7 LSFAYGAR-RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV-----------AGHDLRRAPRAAL- 73 (236)
T ss_pred eEEEECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------CCEEcccCChhhh-
Confidence 45566532 3456665 45899999999999999999999999999999998852 2221111000000
Q ss_pred HHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. ..++.+|.....+. .+...+. .. .........+.++++.+||.+.+++.+.+|||||+||++||+||+.+|
T Consensus 74 ~--~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 74 A--RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred h--hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0 11222222111110 0111110 00 111223456788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+..+..+.+.|+++.+ .|.|||++|||++++.. ||++++|+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~ 207 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHR 207 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeC
Confidence 99999999999999999999999999975 58999999999999975 999999964
No 381
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=265.73 Aligned_cols=182 Identities=28% Similarity=0.404 Sum_probs=158.8
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKF 426 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~ 426 (605)
.+.++++||++.+| |+++|+||+|||||||+|+++-++.|++|.+. +..+. +..|+|+.|.+. .|
T Consensus 16 a~il~~isl~v~~G-----e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa-Lf 89 (223)
T COG4619 16 AKILNNISLSVRAG-----EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA-LF 89 (223)
T ss_pred CeeecceeeeecCC-----ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcc-cc
Confidence 45789999999988 68999999999999999999999999999875 33222 235999999875 47
Q ss_pred cCcHHHHHHh--hhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040300 427 QSTVRHLLHQ--KIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503 (605)
Q Consensus 427 ~~tv~~~~~~--~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~ 503 (605)
..||++++.. .++....+...+.+.++++++. .++++++.+|||||+||+||+|-|..-|+|||||||||+||+.++
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 7899998743 2233334566778899999998 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
+.+.++|-++.+++..++++||||-+.+.+.+|++|-+..
T Consensus 170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence 9999999999988899999999999999999999999874
No 382
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=293.68 Aligned_cols=202 Identities=29% Similarity=0.406 Sum_probs=145.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 11 ~l~i~~l~--------~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~----------- 70 (265)
T PRK10575 11 TFALRNVS--------FRVPGR-TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL----------- 70 (265)
T ss_pred eEEEeeEE--------EEECCE-EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-----------
Confidence 56666654 456432 3455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|..+.......... ..++.+|.....+. .+..++.. .+ .......++.++++.++|.+.+++.+.+|
T Consensus 71 ~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 71 DAQPLESWSSKAFAR--KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred CCEehhhCCHHHHhh--heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 222111100000000 11122222111111 11111100 00 01223456788999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|.++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999765 899999999999999999999999753
No 383
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.1e-34 Score=273.95 Aligned_cols=155 Identities=30% Similarity=0.477 Sum_probs=130.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~~~~~l~~~~~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 7 SFRYPGAEPPVLRNVSFSIEPG-----ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEcCCCCCcceeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEE
Confidence 6667642 23688999998888 78999999999999999999999999999875 22111 2358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+... +..|+.+++ |||||+|||+|||||+.+|++|||||||++|
T Consensus 82 ~q~~~~-~~~tv~~~l---------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~L 127 (173)
T cd03246 82 PQDDEL-FSGSIAENI---------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHL 127 (173)
T ss_pred CCCCcc-ccCcHHHHC---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcccc
Confidence 998643 334666553 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|+.++..++++|+++.+ .|.|+|+||||++++. +|||+++|+++
T Consensus 128 D~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~v~~l~~G 171 (173)
T cd03246 128 DVEGERALNQAIAALKA-AGATRIVIAHRPETLA-SADRILVLEDG 171 (173)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 99999999999999854 5899999999999885 79999999854
No 384
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-34 Score=288.46 Aligned_cols=200 Identities=17% Similarity=0.249 Sum_probs=158.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.. | ++|++. +..+. .
T Consensus 13 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 13 NLWYGEK-HALYDITISIPKN-----RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred EEEECCe-eeeeeeEEEECCC-----cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 6777653 4689999999888 7899999999999999999999976 3 479875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+++++..... .... ....+.++++.+++. ...++.+.+|||||+|||+|||||+
T Consensus 87 ~~i~~~~q~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 87 RKIGMVFQRPNP-FPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred ceEEEEecCCcc-CcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 358999998654 34699998753211 1111 123456778888774 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+|||+++++++.. ...++++++..
T Consensus 166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 237 (253)
T PRK14261 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKL--IEFDKTTQIFE 237 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEE--EEcCCHHHHHh
Confidence 99999999999999999999999999999853 58999999999999999999999986543 35577777654
No 385
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.2e-34 Score=289.27 Aligned_cols=194 Identities=23% Similarity=0.307 Sum_probs=140.6
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCCChhhhhhhhccchhhhh-
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPPDWQEILTYFRGSELQNY- 155 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~~~~~~~g~~l~~~- 155 (605)
++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+ .|++.. .|..+...
T Consensus 7 l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~-----------~g~~~~~~~ 74 (247)
T TIGR00972 7 LNLFYGEK-EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF-----------DGQDIYDKK 74 (247)
T ss_pred EEEEECCe-eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE-----------CCEEccccc
Confidence 44566543 2455555 35799999999999999999999999999998 998852 22211100
Q ss_pred -HHHHHHHHHHHhhcccccccchhhhhchhh---hh---cCchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHHHH
Q 040300 156 -FTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QV---LDQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGELQR 224 (605)
Q Consensus 156 -~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~---l~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~QR 224 (605)
...... -...+.+|.....+..+..++. .. .......+++.++++.+||. +.+++++.+|||||+||
T Consensus 75 ~~~~~~~--~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 75 IDVVELR--RRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR 152 (247)
T ss_pred cchHHHH--hheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH
Confidence 000000 0112223322111111111111 00 11123345678899999998 78899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++||+||+.+|++|||||||++||+..+..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYD 218 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999977 48999999999999999999999974
No 386
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.1e-33 Score=286.76 Aligned_cols=199 Identities=18% Similarity=0.207 Sum_probs=152.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|++ +|++|++. +.... ...++
T Consensus 8 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 8 HVSVEDK-AILRGLNLEVRPG-----EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred EEEeCCe-eeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 6677653 4688999998888 789999999999999999999995 69999875 22111 13489
Q ss_pred eecCcCCCCCcCcHHHHHHhh---hc---c-CCCC----HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQK---IR---D-SYTH----PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~---~~---~-~~~~----~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......++..+.... .. . .... ..++.++++.+++. ...++.+. +|||||+|||+|||||+
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 999986543333443332110 00 0 0001 23456788888995 56777775 89999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~~ 556 (605)
++|++|||||||++||+.++..+.++|+++.. .++|||+||||++++..+ ||++++++++... ..++++.
T Consensus 162 ~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~--~~g~~~~ 232 (248)
T PRK09580 162 LEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV--KSGDFTL 232 (248)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE--EeCCHHH
Confidence 99999999999999999999999999999854 589999999999999987 8999999865432 3455553
No 387
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=309.30 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=146.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+.+ +|+.. ..+++++ .+.+||+++|+|||||||||||++|+|+++|+.|++..
T Consensus 19 ~l~l~~v~~--------~~~~~-~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i----------- 78 (377)
T PRK11607 19 LLEIRNLTK--------SFDGQ-HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML----------- 78 (377)
T ss_pred eEEEEeEEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-----------
Confidence 477766544 55532 2344444 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+.+... ..-...+.+|.....|. .+..++... ......++++.++++.++|.+++++++.+|||||
T Consensus 79 ~g~~i~~~~~----~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq 154 (377)
T PRK11607 79 DGVDLSHVPP----YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQ 154 (377)
T ss_pred CCEECCCCCH----HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 2221111000 00011222222222221 111111110 1122345678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 155 ~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999998764 89999999999999999999999974
No 388
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-34 Score=309.02 Aligned_cols=197 Identities=23% Similarity=0.295 Sum_probs=143.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--R 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~ 158 (605)
+++++|+.. .+ +++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 4 ~l~~~~~~~--~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~-----------~g~~i~~~~~~~~ 69 (354)
T TIGR02142 4 RFSKRLGDF--SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL-----------NGRTLFDSRKGIF 69 (354)
T ss_pred EEEEEECCE--EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECccCccccc
Confidence 577788753 23 444 35799999999999999999999999999999999742 1211110000 0
Q ss_pred HHHHHHHHhhcccccccchh-hhhchhhhh---cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 159 ILEDNLKAIIKPQYVDHIPK-AVQGNVGQV---LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.........+.+|.....+. .+..++... ........++.++++.++|.+.+++++.+|||||||||+||+||+.+
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 00000011222232221111 111111100 01122345688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++|||||||++||+..+..+.++|+++.++ |.|||+||||++++..+||++++|+.+
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999875 899999999999999999999999653
No 389
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-34 Score=292.41 Aligned_cols=203 Identities=24% Similarity=0.368 Sum_probs=144.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++...
T Consensus 5 ~l~~~~l--------~~~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~---------- 65 (255)
T PRK11300 5 LLSVSGL--------MMRFGGL-LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR---------- 65 (255)
T ss_pred eEEEeeE--------EEEECCE-EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC----------
Confidence 4666665 4466532 3455665 457999999999999999999999999999999987521
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh-------------hh-----cC--chHHHHHHHHHHhhcCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG-------------QV-----LD--QKDERDMKADLCTDLDL 206 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~-------------~~-----l~--~~~~~~~~~~~l~~l~L 206 (605)
|..+........ ......+.+|.....+. .+..++. .. +. ......++.++++.+||
T Consensus 66 -g~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 143 (255)
T PRK11300 66 -GQHIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL 143 (255)
T ss_pred -CEECCCCCHHHH-HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh
Confidence 111100000000 00000111111111110 0000000 00 00 01223467788999999
Q ss_pred chhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 207 ~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
.+.+++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|.++.++ +.|||++||+++++..+||+
T Consensus 144 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 144 LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999875 89999999999999999999
Q ss_pred EEEEeCc
Q 040300 286 ICCLYGK 292 (605)
Q Consensus 286 i~vl~g~ 292 (605)
+++|..+
T Consensus 224 i~~l~~g 230 (255)
T PRK11300 224 IYVVNQG 230 (255)
T ss_pred EEEEECC
Confidence 9999753
No 390
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-34 Score=294.82 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=145.9
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.||.+ +|+.. ...+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~~~~l~~--------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~---------- 66 (279)
T PRK13635 5 IIRVEHISF--------RYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV---------- 66 (279)
T ss_pred eEEEEEEEE--------EeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE----------
Confidence 577777654 55431 23455555 45799999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++......... -...+.+|... ..+ ..++.+. ......++++.++++.+||.+..++.+.+
T Consensus 67 -~g~~i~~~~~~~~~--~~i~~~~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 140 (279)
T PRK13635 67 -GGMVLSEETVWDVR--RQVGMVFQNPDNQFV---GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHR 140 (279)
T ss_pred -CCEECCcCcHHHHh--hheEEEEeCHHHhcc---cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCccc
Confidence 22221110000000 00111122110 000 0112111 11223356788999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++.. ||++++|+++
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G 216 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKG 216 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999875 8999999999999975 9999999754
No 391
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.3e-34 Score=279.51 Aligned_cols=181 Identities=25% Similarity=0.398 Sum_probs=144.8
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCC
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~ 424 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.. +++|++|++..
T Consensus 7 ~~~~~~~~~~~~~il~~~s~~i~~G-----~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~---~~g-~i~~~~q~~~l 77 (204)
T cd03250 7 SFTWDSGEQETSFTLKDINLEVPKG-----ELVAIVGPVGSGKSSLLSALLGELEKLSGSVS---VPG-SIAYVSQEPWI 77 (204)
T ss_pred EEecCCCCccccceeeeeeEEECCC-----CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE---EcC-EEEEEecCchh
Confidence 6677653 24788999999888 68999999999999999999999999999975 222 69999999764
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCC-----------chhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLI-----------EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+..|+++++..... + ......+.++.+++ +...++.+.+|||||+|||+|||||+.+|+++||||
T Consensus 78 -~~~t~~enl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE 153 (204)
T cd03250 78 -QNGTIRENILFGKP--F-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD 153 (204)
T ss_pred -ccCcHHHHhccCCC--c-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 46799998754211 1 12223334444433 334566789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 494 PSAYLDSEQRIVAAK-VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~-~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||++||+.++..+.+ +++++.+ .+.|||++||+++++.. ||++++|+++
T Consensus 154 P~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~~~~-~d~i~~l~~G 203 (204)
T cd03250 154 PLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQLLPH-ADQIVVLDNG 203 (204)
T ss_pred ccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHHHhh-CCEEEEEeCC
Confidence 999999999999988 5666644 48999999999999988 9999999853
No 392
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-34 Score=300.27 Aligned_cols=213 Identities=24% Similarity=0.302 Sum_probs=148.3
Q ss_pred eEEEecCCcccCCCce-EEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTT-HRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~-~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.||.+.|...-. +..+.....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~---------- 74 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY---------- 74 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEE----------
Confidence 5778877664421100 00000113466666 46899999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHHHH-HHHHhhcccccc--cchhh-hhchhhh------hcCchHHHHHHHHHHhhcCCc-hhhcccCC
Q 040300 147 FRGSELQNYFTRILED-NLKAIIKPQYVD--HIPKA-VQGNVGQ------VLDQKDERDMKADLCTDLDLN-QVIDRNVG 215 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~-~~~~~~~~q~~~--~~~~~-~~~~v~~------~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~ 215 (605)
.|.++.......... .-...+.+|... ..|.. +...+.+ .+.....+.++.++++.+||. ..+++++.
T Consensus 75 -~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 75 -QGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred -CCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 222221110000000 001111222110 01110 0001111 012223456789999999996 57899999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+|||+||+||+.+|++||+||||++||+..+.+++++|+++.++ |.|||+||||++++.++||+|++|+.+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G 231 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG 231 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999875 999999999999999999999999754
No 393
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-34 Score=296.96 Aligned_cols=187 Identities=22% Similarity=0.349 Sum_probs=136.5
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH----HHHHHHHHHHh
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF----TRILEDNLKAI 167 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~----~~~~~~~~~~~ 167 (605)
.|++++ .+++|++++|+|+||||||||+++|+|+++|+.|++.. .|.++.... ..... ....
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~-----------~g~~i~~~~~~~~~~~~~--~~i~ 88 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRV-----------DDTLITSTSKNKDIKQIR--KKVG 88 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEccccccccCHHHHH--hheE
Confidence 455555 45799999999999999999999999999999999842 121111000 00000 0011
Q ss_pred hccccc--ccchhhhhchhh---hh--cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 168 IKPQYV--DHIPKAVQGNVG---QV--LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 168 ~~~q~~--~~~~~~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+.+|.. ...+..+..++. .. ........++.++++.++|. ..+++++.+|||||+||++||+||+.+|++||
T Consensus 89 ~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 89 LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 122211 000001111110 00 11222345678899999997 57899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||++||+..+..+.++|+++.++++|||+||||++++..+||++++|.++
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999777899999999999999999999999753
No 394
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.4e-34 Score=309.93 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=161.8
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC----eeeee--ccc-----------cCcceeEeec
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD----SVEDS--DVE-----------IPEFNVSYKP 419 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~----~G~i~--~~~-----------~~~~~i~y~~ 419 (605)
..++++||++.+| |++||+|.+||||||++++|.|++++. +|++. +.+ .....|+|+|
T Consensus 23 ~~v~~vsf~v~~G-----E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 23 PAVRDVSFEVEPG-----EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred eeeecceEEecCC-----cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 4688999999988 799999999999999999999999987 68874 111 1234699999
Q ss_pred CcCCCC--CcCcHHHHHHhhh--ccCC---CCHHHHHHHHhhcCCchhh--ccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 420 QKISPK--FQSTVRHLLHQKI--RDSY---THPQFVSDVMKPLLIEQLM--DQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 420 q~~~~~--~~~tv~~~~~~~~--~~~~---~~~~~~~~~l~~l~l~~~~--~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
|++... ..+|+.+-+.... .... .....+.++++.++|.+-. +++|++|||||||||+||+||+.+|+|||
T Consensus 98 Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLI 177 (539)
T COG1123 98 QDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI 177 (539)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEE
Confidence 996432 2246654332211 1111 1234577899999998544 45999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||||++||+..+.+++++|+++.++.|.++|+||||+..+.++||||+||..+.. ...|++++++...
T Consensus 178 aDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i--VE~G~~~~i~~~p 246 (539)
T COG1123 178 ADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI--VETGPTEEILSNP 246 (539)
T ss_pred ECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE--EEecCHHHHHhcc
Confidence 99999999999999999999999988999999999999999999999999997554 4669999998864
No 395
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=288.24 Aligned_cols=202 Identities=16% Similarity=0.245 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~-----~----~ 412 (605)
.+.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +..+ . .
T Consensus 15 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 15 KIFYGN-FMAVRDSHVPIRKN-----EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEEeCC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 566765 34688999998888 78999999999999999999999987 688875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC--CHHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT--HPQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~--~~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+... +..|+.+++..... ..+. ....+.++++.+++.. ..++++.+|||||+||++|||||+++
T Consensus 89 ~~i~~v~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (261)
T PRK14263 89 RYIGMVFQQPNP-FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATE 167 (261)
T ss_pred hceEEEecCCcc-ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 358999998754 46899988753211 1111 1235677889988853 45678899999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC------CcceeeecCChhhhhc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG------QPSVDCVANAPQSLLT 559 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g------~~~~~~~~~~p~~~~~ 559 (605)
|++|||||||+|||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+. ..+.....++++++++
T Consensus 168 p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 168 PEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 99999999999999999999999999984 3 68999999999999999999999950 0122245577777654
No 396
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-34 Score=308.35 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=159.1
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCC
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKF 426 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~ 426 (605)
.+.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... .++.+......
T Consensus 28 ~~~~~~~~~~~IL~nVSfsI~~G-----EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~---I~G~~-~~i~~~~~l~~ 98 (549)
T PRK13545 28 FFRSKDGEYHYALNNISFEVPEG-----EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD---IKGSA-ALIAISSGLNG 98 (549)
T ss_pred EEecCCCccceEEeeeEEEEeCC-----CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE---ECCEe-eeEEeccccCC
Confidence 5666543 23688999998888 78999999999999999999999999999975 11111 12222222334
Q ss_pred cCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040300 427 QSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 427 ~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~ 502 (605)
..|+++++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 5689887643111 11111 1235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+..++++|+++. +.|.|||+||||++++..+|||+++++++.. ...+++++++.....|
T Consensus 179 r~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~DrIivL~~GkI--v~~G~~~el~~~~~~~ 237 (549)
T PRK13545 179 TKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTKALWLHYGQV--KEYGDIKEVVDHYDEF 237 (549)
T ss_pred HHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhhHHHH
Confidence 999999999985 4589999999999999999999999986543 3557787776654333
No 397
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-34 Score=291.62 Aligned_cols=203 Identities=24% Similarity=0.356 Sum_probs=147.1
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.+|++.|+. ++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 6 ~~l~i~~l~--------~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~---------- 66 (265)
T PRK10253 6 ARLRGEQLT--------LGYGKY-TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL---------- 66 (265)
T ss_pred cEEEEEEEE--------EEECCE-EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE----------
Confidence 367777654 466542 3456666 45799999999999999999999999999999998852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|..+..+....... ..++.+|.....+. .+...+.. .+ .......++.++++.++|.+..++.+.+
T Consensus 67 -~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (265)
T PRK10253 67 -DGEHIQHYASKEVAR--RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT 143 (265)
T ss_pred -CCEEhhhCCHHHHhh--heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc
Confidence 222211110000000 11222222111110 00000000 00 0122345678899999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+||++||+||+.+|++|||||||++||+..+..+.++|+++.++ +.|||++|||++++..+||++++|+++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999864 899999999999999999999999753
No 398
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-34 Score=307.69 Aligned_cols=205 Identities=24% Similarity=0.413 Sum_probs=168.7
Q ss_pred hheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeE
Q 040300 346 TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVS 416 (605)
Q Consensus 346 ~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~ 416 (605)
+. ++.|++....+++++|++.+| +.++|+|+||||||||+++|+|+.+|++|++. +.+.. ...++
T Consensus 325 ~l-~~~y~~g~~~l~~l~~t~~~g-----~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 325 NL-SFRYPDGKPALSDLNLTIKAG-----QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred ce-EEecCCCCcccCCceeEecCC-----cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 44 899998766789999999998 68999999999999999999999999999986 22222 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhcc----------CcCcCChhHHHHHHHHHHHccCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ----------EVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~----------~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
|++|++. .|..|+++|+..... ..+.+.+.++++..++.++.++ .-..|||||+|||++||||.+++
T Consensus 399 ~v~Q~p~-lf~gTireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 399 WVSQNPY-LFAGTIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeCCCCc-cccccHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999974 478899999865322 2344566777777777655443 33459999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
++|||||||+|||.++...+.+.|.++.+ ++|+|+|||++..+.. +|+|+||+++.. ...|+++++....+.|
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l--~~~g~~~~L~~~~~~y 548 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRL--VEQGTHEELSEKQGLY 548 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCce--eccCCHHHHhhcCcHH
Confidence 99999999999999999999999999864 6999999999999876 999999996553 4679999987765444
No 399
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.9e-34 Score=287.84 Aligned_cols=198 Identities=24% Similarity=0.344 Sum_probs=141.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+........
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 72 (230)
T TIGR03410 5 NLNVYYGQS-HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL-----------DGEDITKLPPHER 72 (230)
T ss_pred eEEEEeCCe-EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-----------CCEECCCCCHHHH
Confidence 456667643 3455565 45899999999999999999999999999999999852 2221111100000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhhh--cCchHHHHHHHHHHhhcC-CchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQV--LDQKDERDMKADLCTDLD-LNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~~--l~~~~~~~~~~~~l~~l~-L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
. ....++.+|.....+. .+...+... .......+.+.++++.++ +.+..++++.+|||||+||++||+||+.+|+
T Consensus 73 ~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 73 A-RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred H-HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 0012222332222221 111111100 001112334577788887 6778899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++||||||++||+.++.++.++|+++.++ +.|||++|||++++..+||++++|+.+
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999874 899999999999999999999999753
No 400
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=287.48 Aligned_cols=177 Identities=24% Similarity=0.342 Sum_probs=133.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK- 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~- 178 (605)
+.+|+++||+|+||||||||+++|+|+++|+.|++... |..+..+... ....++.+|.....+.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~----~~~i~~~~q~~~~~~~~ 86 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN-----------GQDHTTTPPS----RRPVSMLFQENNLFSHL 86 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC-----------CeecCcCChh----hccEEEEecccccccCC
Confidence 37999999999999999999999999999999988521 2111110000 0011222222111111
Q ss_pred hhhchhhhh----c-CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 040300 179 AVQGNVGQV----L-DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253 (605)
Q Consensus 179 ~~~~~v~~~----l-~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~ 253 (605)
.+..++... . .......++.++++.+||++.+++.+.+|||||+||++||+|++.+|++|||||||++||+.++.
T Consensus 87 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 87 TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 111111000 0 01223456889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 254 KAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 254 ~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+.++|+++.++ |.|||+||||++++..+||++++|..
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 205 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD 205 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999764 89999999999999999999999964
No 401
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-34 Score=293.44 Aligned_cols=194 Identities=25% Similarity=0.378 Sum_probs=141.1
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.+...+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+.... .
T Consensus 12 l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~----~ 76 (272)
T PRK15056 12 VTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI-----------LGQPTRQAL----Q 76 (272)
T ss_pred EEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEhHHhh----c
Confidence 4556643233456666 45799999999999999999999999999999999852 121111000 0
Q ss_pred HHHHHhhccccccc---chhhhhchhh-------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDH---IPKAVQGNVG-------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 162 ~~~~~~~~~q~~~~---~~~~~~~~v~-------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
....++.+|.... .+..+...+. ..+ .......++.++++.+||.+..++++.+|||||+||++||+
T Consensus 77 -~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 77 -KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred -cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 0001111221100 0000000000 000 11223456778999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+.+|++|||||||++||+.++..+.++|++++++|.|||+||||++++..+||++++++|+
T Consensus 156 aL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~ 218 (272)
T PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGT 218 (272)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCE
Confidence 999999999999999999999999999999999877899999999999999999999888654
No 402
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.1e-34 Score=290.91 Aligned_cols=196 Identities=29% Similarity=0.469 Sum_probs=143.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 6 ~l~~~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 73 (256)
T TIGR03873 6 RVSWSAGGR-LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL-----------AGVDLHGLSRRAR 73 (256)
T ss_pred eEEEEECCE-EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-----------CCEEcccCCHHHH
Confidence 355566543 3566666 45899999999999999999999999999999998752 2222111100000
Q ss_pred HHHHHHhhcccccccchh-hhhchhh-------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG-------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~-------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.. ..++.+|.....+. .+..++. ... ......+++.++++.+++.++.++.+.+|||||+||++||+|
T Consensus 74 ~~--~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 74 AR--RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred hh--heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 00 11222222111110 0011110 000 111234567889999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|+++||||||++||+..+..+.++|+++.+++.|||++|||++++..+||+|++|..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999987789999999999999999999999964
No 403
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=287.02 Aligned_cols=202 Identities=17% Similarity=0.263 Sum_probs=162.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--c------ccc---C----cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--D------VEI---P----EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~------~~~---~----~~ 413 (605)
+++|++. ..+.+++|++.+| |+++|+||||||||||+++|+|+.+|++|++. + ... + ..
T Consensus 17 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 17 YLYINDK-AILKDITIKIPNN-----SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred EEecCCc-eeEeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 6778763 4689999998888 78999999999999999999999999987642 1 111 1 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|++|+.......|+.+++...... .... ...+.++++.+++. +..++.+..||||||||++|||||+.
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 589999987655557999887532211 1111 13456788899985 46788999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|+++||||||++||+.++..+.++|.++. + +.|||+||||+.++..+|||+++++++.. ...++++++.+.
T Consensus 171 ~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i--~~~g~~~~~~~~ 242 (257)
T PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGEL--VEWGSSNEIFTS 242 (257)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999999984 3 68999999999999999999999986543 345777776653
No 404
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-34 Score=292.03 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=146.7
Q ss_pred EEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-CC----CceeeCCC-C---
Q 040300 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-PN----LGRFNNPP-D--- 139 (605)
Q Consensus 70 i~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-p~----~G~i~~~~-~--- 139 (605)
++|.||...|... +..--.+++++ .+++||++||||+|||||||+.+.|.|+++ |+ .|++.... +
T Consensus 2 L~v~nL~v~f~~~-----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTD-----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecC-----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence 5677776543221 01112455555 358999999999999999999999999998 43 35543110 0
Q ss_pred -hhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhh--c-CchHHHHHHHHHHhhcCCch---hhcc
Q 040300 140 -WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV--L-DQKDERDMKADLCTDLDLNQ---VIDR 212 (605)
Q Consensus 140 -~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~--l-~~~~~~~~~~~~l~~l~L~~---~~dr 212 (605)
-++.+..++|.++...|+... .++.|-+ .+-..+...+... . .+.+.++++.++|+.+||.+ .+++
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~-----~sLnPv~--~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~ 149 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPM-----TSLNPVM--TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS 149 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCch-----hhcCChh--hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhh
Confidence 011222345554333222110 0111100 0000000111100 1 12334678999999999973 7899
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++.+|||||+|||+||.||+.+|++||.||||++||+..+.+++++|++|.+ .|.++|+||||+.++.++||||.|||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999997 599999999999999999999999985
Q ss_pred c
Q 040300 292 K 292 (605)
Q Consensus 292 ~ 292 (605)
+
T Consensus 230 G 230 (316)
T COG0444 230 G 230 (316)
T ss_pred c
Confidence 4
No 405
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.7e-34 Score=292.02 Aligned_cols=190 Identities=25% Similarity=0.366 Sum_probs=139.1
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-HHHHHHhhc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL-EDNLKAIIK 169 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~~~ 169 (605)
..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+..+..... ...-...+.
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~~~~~~~~~~~i~~v 93 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF-----------RGQDLYQLDRKQRRAFRRDVQLV 93 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEEccccCHHHHHHHhhceEEE
Confidence 4566666 46899999999999999999999999999999999852 2222111100000 000011222
Q ss_pred ccccc-cc-hh-hhhchhh---h---hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 170 PQYVD-HI-PK-AVQGNVG---Q---VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 170 ~q~~~-~~-~~-~~~~~v~---~---~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+|... .+ +. .+...+. . .+.......++.++++.+||. ..+++++.+|||||+||++||+||+.+|++||
T Consensus 94 ~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 94 FQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred ecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22210 00 00 0111110 0 011123346788999999996 68899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||++||+..+..+.++|+++.++ |.|||+||||++.+..+||++++|+++
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 227 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCC
Confidence 99999999999999999999999875 899999999999999999999999753
No 406
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-33 Score=281.49 Aligned_cols=185 Identities=21% Similarity=0.303 Sum_probs=149.3
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~ 418 (605)
+++|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +... + ...++|+
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (221)
T cd03244 9 SLRYRPNLPPVLKNISFSIKPG-----EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred EEecCCCCcccccceEEEECCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence 6667532 24688999999888 68999999999999999999999999999875 2111 1 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-----------ccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-----------DQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+.. .+..|+.+++... .. .....+.++++.+++.+.. ++.+.+|||||+|||+|||||+.+|+
T Consensus 84 ~q~~~-l~~~tv~enl~~~--~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 84 PQDPV-LFSGTIRSNLDPF--GE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred CCCCc-cccchHHHHhCcC--CC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99876 3456998887421 11 1233455566666665544 46899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
++||||||++||+.++..++++|+++. + +.|||++|||++++.. ||++++|+++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~ 214 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIID-SDRILVLDKGR 214 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCe
Confidence 999999999999999999999999974 3 6899999999999976 99999998654
No 407
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-33 Score=290.09 Aligned_cols=197 Identities=26% Similarity=0.280 Sum_probs=162.6
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++ ....+++++|++.+| |+++|+|+||||||||+++|+|+++ ++|++. +..+. ...++|+
T Consensus 9 s~~~~~~~~~~l~~isl~I~~G-----e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 9 TAKYTEGGNAVLENISFSISPG-----QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEeCCCCCcceeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 677752 234689999999988 7899999999999999999999997 789875 22211 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCc-----------CChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-----------LSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----------LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... |..|+++++... .. .....+.++++.+++....++.+.. |||||+|||+|||||+.+|+
T Consensus 83 ~q~~~l-f~~tv~~nl~~~--~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 83 PQKVFI-FSGTFRKNLDPY--GK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred CCCccc-chhhHHHHhhhc--cC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 998754 567999987421 11 2345667889999999888888876 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||||++||+.++..+.+.|+++. .++|||+||||++++.. ||||++|+.+.. ...++|+++++.
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i--~~~g~~~~l~~~ 226 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKV--RQYDSIQKLLNE 226 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeE--eecCCHHHHhhC
Confidence 999999999999999999999999863 48999999999999875 999999986543 466899999884
No 408
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=288.41 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=147.0
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+.|++.||.. +|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~~l~~~~l~~--------~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~---------- 64 (257)
T PRK10619 4 NKLNVIDLHK--------RYGEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV---------- 64 (257)
T ss_pred ccEEEeeeEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----------
Confidence 4577776544 55432 2345555 35799999999999999999999999999999998852
Q ss_pred hccchhhhh---------HH--HHHHHHHHHhhcccccccchh-hhhchhh----hh--cCchHHHHHHHHHHhhcCCch
Q 040300 147 FRGSELQNY---------FT--RILEDNLKAIIKPQYVDHIPK-AVQGNVG----QV--LDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 147 ~~g~~l~~~---------~~--~~~~~~~~~~~~~q~~~~~~~-~~~~~v~----~~--l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.|..+... .. ....-.....+.+|.....+. .+..++. .. ......+.++.++++.+||.+
T Consensus 65 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 143 (257)
T PRK10619 65 -NGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE 143 (257)
T ss_pred -CCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh
Confidence 12111000 00 000000112333343222221 1111111 00 111234567889999999987
Q ss_pred h-hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 209 V-IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 209 ~-~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
. .++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+.|+|||+||||++++..+||+|+
T Consensus 144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 144 RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 6 489999999999999999999999999999999999999999999999999998779999999999999999999999
Q ss_pred EEeC
Q 040300 288 CLYG 291 (605)
Q Consensus 288 vl~g 291 (605)
+|..
T Consensus 224 ~l~~ 227 (257)
T PRK10619 224 FLHQ 227 (257)
T ss_pred EEEC
Confidence 9964
No 409
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=7.3e-34 Score=289.02 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=143.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH----
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF---- 156 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~---- 156 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++... |..+..+.
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~-----------g~~i~~~~~~~~ 72 (252)
T TIGR03005 5 DVTKRFGIL-TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE-----------GEQLYHMPGRNG 72 (252)
T ss_pred EEEEEeCCe-eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC-----------CEEccccccccc
Confidence 456677642 3455555 458999999999999999999999999999999988521 11110000
Q ss_pred -------HHHHHHHHHHhhcccccccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHH
Q 040300 157 -------TRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGEL 222 (605)
Q Consensus 157 -------~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~ 222 (605)
.......-..++.+|.....+. .+..++.. ..........+.++++.+|+.+.+++.+.+|||||+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 0000000011222232211111 11111110 011122345678899999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||++||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+.+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999999999875 899999999999999999999999653
No 410
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-33 Score=273.92 Aligned_cols=153 Identities=23% Similarity=0.346 Sum_probs=130.1
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---C
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---P 424 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~ 424 (605)
.+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+.. .
T Consensus 15 ~l~~vs~~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAG-----EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGL 89 (182)
T ss_pred eecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcc
Confidence 578888888887 78999999999999999999999999999875 22211 235899999842 3
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
.+..|+++++..... |||||+|||+|||||+.+|++|||||||++||+.++.
T Consensus 90 ~~~~t~~e~l~~~~~----------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 141 (182)
T cd03215 90 VLDLSVAENIALSSL----------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141 (182)
T ss_pred cCCCcHHHHHHHHhh----------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHH
Confidence 345688887632100 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
.+.++|+++.. .+.|+|++|||++++..+||++++|+++
T Consensus 142 ~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G 180 (182)
T cd03215 142 EIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEG 180 (182)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCC
Confidence 99999999854 4899999999999999999999999853
No 411
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-34 Score=289.26 Aligned_cols=192 Identities=30% Similarity=0.435 Sum_probs=141.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+++|++++|+|+||||||||+++|+|+++|+.|++.. .|..+.........
T Consensus 8 l~~~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~-----------~g~~~~~~~~~~~~ 75 (258)
T PRK13548 8 LSVRLGGR-TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL-----------NGRPLADWSPAELA 75 (258)
T ss_pred EEEEeCCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-----------CCEEcccCCHHHhh
Confidence 44566542 3455555 45799999999999999999999999999999999852 12111110000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
...++.+|.....+. .++.+.+ .......++.++++.++|.+..++.+.+|||||+||++||+||+
T Consensus 76 --~~i~~~~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 76 --RRRAVLPQHSSLSFP---FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred --hheEEEccCCcCCCC---CCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 011222222111111 1222111 11223456788999999999999999999999999999999999
Q ss_pred ------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 ------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~-~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+.++..+.++|+++. +.+.|||++|||++++..+||+|++|..
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 216 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 5999999999999999999999999999998 5689999999999999999999999964
No 412
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-34 Score=299.42 Aligned_cols=205 Identities=21% Similarity=0.301 Sum_probs=144.0
Q ss_pred eEEEecCCcccCCCceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC----CCCceeeCCCCh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK----PNLGRFNNPPDW 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~----p~~G~i~~~~~~ 140 (605)
.|++.||.+ +|+. ....+++++ .+.+||++||+|+||||||||+++|+|+++ |+.|++.
T Consensus 3 ~L~v~~l~~--------~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~----- 69 (330)
T PRK15093 3 LLDIRNLTI--------EFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR----- 69 (330)
T ss_pred eEEEeeeEE--------EEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE-----
Confidence 567777655 4521 123456666 468999999999999999999999999997 4789874
Q ss_pred hhhhhhhccchhhhhHHHHHHHHH--HHhhcccccc--cchhh-hhchhhhh----------cCc-hHHHHHHHHHHhhc
Q 040300 141 QEILTYFRGSELQNYFTRILEDNL--KAIIKPQYVD--HIPKA-VQGNVGQV----------LDQ-KDERDMKADLCTDL 204 (605)
Q Consensus 141 ~~~~~~~~g~~l~~~~~~~~~~~~--~~~~~~q~~~--~~~~~-~~~~v~~~----------l~~-~~~~~~~~~~l~~l 204 (605)
|.|.++............ ...+.+|... ..|.. +...+.+. ... ...+.++.++++.+
T Consensus 70 ------~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 143 (330)
T PRK15093 70 ------FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRV 143 (330)
T ss_pred ------ECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHC
Confidence 222221111000000000 0111122111 01100 01111110 001 12346788999999
Q ss_pred CCch---hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHH
Q 040300 205 DLNQ---VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLD 280 (605)
Q Consensus 205 ~L~~---~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~ 280 (605)
||.+ .+++++.+|||||+|||+||+||+.+|++|||||||++||+..+.++.++|+++.++ |.|||+||||++++.
T Consensus 144 gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~ 223 (330)
T PRK15093 144 GIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLS 223 (330)
T ss_pred CCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 9973 578999999999999999999999999999999999999999999999999999874 899999999999999
Q ss_pred hhcCEEEEEeCc
Q 040300 281 YLSDFICCLYGK 292 (605)
Q Consensus 281 ~~~D~i~vl~g~ 292 (605)
.+||+|++|+.+
T Consensus 224 ~~~dri~vm~~G 235 (330)
T PRK15093 224 QWADKINVLYCG 235 (330)
T ss_pred HhCCEEEEEECC
Confidence 999999999854
No 413
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-34 Score=293.24 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=139.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH-HHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT-RIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~-~~~ 160 (605)
++++|+...-.|.+++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+..+.. ...
T Consensus 7 l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~~ 75 (274)
T PRK13644 7 VSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV-----------SGIDTGDFSKLQGI 75 (274)
T ss_pred EEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-----------CCEECCccccHHHH
Confidence 4455632212455555 35799999999999999999999999999999998842 1211110000 000
Q ss_pred HHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 ~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.. ...+.+|... ... ..++.+. .......+++.++++.+||++..++++.+|||||+||++||+|
T Consensus 76 ~~--~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 76 RK--LVGIVFQNPETQFV---GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred Hh--heEEEEEChhhhcc---cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence 00 0111111110 000 0011111 1122334568889999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+.+|++|||||||++||+.++..+++.|+++.++|.|||++|||++++. .||++++|+.+
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G 211 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRG 211 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECC
Confidence 99999999999999999999999999999999877999999999999995 59999999643
No 414
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=316.67 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++... ....++|++|+.......
T Consensus 8 s~~~~~~-~il~~vsl~i~~G-----e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~--~~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 8 TMQFGAK-PLFENISVKFGGG-----NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD--PNERLGKLRQDQFAFEEF 79 (530)
T ss_pred EEEeCCc-EeEeCCEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec--CCCEEEEEeccCCcCCCC
Confidence 6778653 4789999999888 7899999999999999999999999999997411 124699999987655567
Q ss_pred cHHHHHHhhhc-------------cC-----------------------CCCHHHHHHHHhhcCCchh-hccCcCcCChh
Q 040300 429 TVRHLLHQKIR-------------DS-----------------------YTHPQFVSDVMKPLLIEQL-MDQEVVNLSGG 471 (605)
Q Consensus 429 tv~~~~~~~~~-------------~~-----------------------~~~~~~~~~~l~~l~l~~~-~~~~~~~LSGG 471 (605)
|+.+++..... .. +.....+.++++.+++.+. .++++.+||||
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 159 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG 159 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence 88876542100 00 0112346678999999864 46789999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeec
Q 040300 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVA 551 (605)
Q Consensus 472 e~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~ 551 (605)
|||||+||+||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||||++++++... ...
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~-~~~ 234 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMADLDYGELR-VYP 234 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEeCCEEE-Eec
Confidence 99999999999999999999999999999999999998864 4899999999999999999999999865432 245
Q ss_pred CChhhhhc
Q 040300 552 NAPQSLLT 559 (605)
Q Consensus 552 ~~p~~~~~ 559 (605)
++++++..
T Consensus 235 g~~~~~~~ 242 (530)
T PRK15064 235 GNYDEYMT 242 (530)
T ss_pred CCHHHHHH
Confidence 77776643
No 415
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-33 Score=277.38 Aligned_cols=173 Identities=23% Similarity=0.241 Sum_probs=140.7
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--ccccC------cce
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEIP------EFN 414 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~~------~~~ 414 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +.... ...
T Consensus 10 ~~~~~~~~~~~~il~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 10 SFTTGKGRSKIPILKDFSGVVKPG-----EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred EEEeccCCCCceeeeeEEEEECCC-----cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcce
Confidence 7777642 34688899988888 7899999999999999999999999 8899875 22211 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
++|++|+....+..||++++..... .. .++++.+|||||+|||+|||||+.+|++||||||
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~--------~~-----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEP 145 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALR--------CK-----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNS 145 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhh--------hc-----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 8999998665556799998743210 00 5778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EecCHHHHHhhcCEEEEEeCCc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFV-VEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiiv-vsHD~~~~~~~adrviv~~g~~ 545 (605)
|++||+.++..++++|+++.++.+.|+|+ ++|+.+++..+||++++|+++.
T Consensus 146 t~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~ 197 (202)
T cd03233 146 TRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197 (202)
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCE
Confidence 99999999999999999986654666555 4566789999999999998654
No 416
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-34 Score=284.71 Aligned_cols=178 Identities=29% Similarity=0.476 Sum_probs=147.5
Q ss_pred ceEEEecCCcccCCCceEEeCCCc--eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNT--FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~--f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
..+++.||.+.|...-. ++... .++++++ .+++||++||||+|||||||+.|+|.|+++|+.|+|.
T Consensus 3 ~ll~v~~l~k~f~~~~~--~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~--------- 71 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG--FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL--------- 71 (268)
T ss_pred ceEEEeccEEEEecccc--cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE---------
Confidence 36788888876643211 22221 3455555 3589999999999999999999999999999999984
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHH
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQ 223 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~Q 223 (605)
|.|.++... ......+++.++++.+|+. +.++|++++|||||+|
T Consensus 72 --f~g~~i~~~---------------------------------~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 72 --FEGKDITKL---------------------------------SKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred --EcCcchhhc---------------------------------chhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 555442211 0122356788999999997 5899999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||+.+|+++++|||+|.||+..+.++.++|.+|.++ |.|.++||||++++.++||+|.|||-
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~ 185 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL 185 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEec
Confidence 999999999999999999999999999999999999999875 99999999999999999999999984
No 417
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.2e-34 Score=285.30 Aligned_cols=174 Identities=26% Similarity=0.379 Sum_probs=132.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-h
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-A 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~ 179 (605)
.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++...... ..+.+|.....+. .
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~-------~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL-----------EGKQITEPGPD-------RMVVFQNYSLLPWLT 70 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEECCCCChh-------heEEecCcccCCCCC
Confidence 699999999999999999999999999999999852 12111110000 0111221111110 0
Q ss_pred hhchhhh-------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 040300 180 VQGNVGQ-------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252 (605)
Q Consensus 180 ~~~~v~~-------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r 252 (605)
+...+.. .......++++.++++.+||.+.+++.+.+|||||+||++||+||+.+|++|||||||++||+.++
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 0011100 011122345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 253 LKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 253 ~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
..+.+.|+++.++ |+|||+||||++++..+||++++|..+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 191 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9999999999764 899999999999999999999999643
No 418
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-33 Score=317.99 Aligned_cols=195 Identities=27% Similarity=0.370 Sum_probs=157.7
Q ss_pred eeecC-CceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYP-TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~-~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|+ + ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|++.....
T Consensus 13 ~~~y~~~-~~il~~vs~~i~~G-----e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~--~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 13 SKVVPPK-KQILKDISLSFFPG-----AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP--APGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEeCCC-CeeeeCceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe--cCCCEEEEEecCCCCCCC
Confidence 77786 4 34789999999988 689999999999999999999999999999741 123569999999765556
Q ss_pred CcHHHHHHhhhc----------------c-C-----------------------CCCHHHHHHHHhhcCCchhhccCcCc
Q 040300 428 STVRHLLHQKIR----------------D-S-----------------------YTHPQFVSDVMKPLLIEQLMDQEVVN 467 (605)
Q Consensus 428 ~tv~~~~~~~~~----------------~-~-----------------------~~~~~~~~~~l~~l~l~~~~~~~~~~ 467 (605)
.|+.+++..... . . +.....+.++++.+++.. .++++.+
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~ 163 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTK 163 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhh
Confidence 789887642110 0 0 001234567888999964 7899999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++++.+...
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999986 359999999999999999999999865432
Q ss_pred eeecCChhhh
Q 040300 548 DCVANAPQSL 557 (605)
Q Consensus 548 ~~~~~~p~~~ 557 (605)
...++++++
T Consensus 240 -~~~g~~~~~ 248 (556)
T PRK11819 240 -PWEGNYSSW 248 (556)
T ss_pred -EecCCHHHH
Confidence 244555543
No 419
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-34 Score=289.50 Aligned_cols=203 Identities=23% Similarity=0.325 Sum_probs=141.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..|.+++ .+.+||++||+|+||||||||+++|+|+++| +.|++..
T Consensus 12 ~l~~~~l--------~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~------ 76 (258)
T PRK14268 12 QIKVENL--------NLWYGEK-QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI------ 76 (258)
T ss_pred eEEEeee--------EEEeCCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE------
Confidence 4666655 4566532 2455555 3579999999999999999999999999985 7898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhh---hh--cCchHHHHHHHHHHhhcCC----chhhccc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QV--LDQKDERDMKADLCTDLDL----NQVIDRN 213 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L----~~~~dr~ 213 (605)
.|..+...........-..++.+|.....+..+..++. .. +.....+.++.++++.+++ .+.++++
T Consensus 77 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 151 (258)
T PRK14268 77 -----EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151 (258)
T ss_pred -----CCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 22211100000000000112222221111111111111 00 1112234567889999988 3567899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+++
T Consensus 152 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G 229 (258)
T PRK14268 152 ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMG 229 (258)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999965 799999999999999999999999753
No 420
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.7e-34 Score=283.98 Aligned_cols=188 Identities=26% Similarity=0.315 Sum_probs=139.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc-cchhhhhHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR-GSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~-g~~l~~~~~~~~ 160 (605)
++.+|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..... .. ..+. +..++.. ..+
T Consensus 28 ~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~--~~-~~~~~~~~~~~~--~tv 101 (224)
T cd03220 28 RKGEVGEF-WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR--VS-SLLGLGGGFNPE--LTG 101 (224)
T ss_pred hhhhcCCe-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE--Ec-hhhcccccCCCC--CcH
Confidence 34466654 2456665 45899999999999999999999999999999999852110 00 0000 0000000 000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.+++.... ... .......++++.++++.++|.+.+++.+.+|||||+||++||+||+.+|+++||
T Consensus 102 ~enl~~~~--------------~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 102 RENIYLNG--------------RLL-GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred HHHHHHHH--------------HHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11110000 000 011122345677889999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|..
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 217 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEK 217 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999977789999999999999999999999964
No 421
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=304.34 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=142.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--R 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~ 158 (605)
+++++|+.. .+ +++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..... .
T Consensus 5 ~l~k~~~~~--~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~-----------~g~~~~~~~~~~~ 70 (352)
T PRK11144 5 NFKQQLGDL--CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL-----------NGRVLFDAEKGIC 70 (352)
T ss_pred EEEEEeCCE--EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEccccccccc
Confidence 456677642 12 333 34799999999999999999999999999999999852 1211110000 0
Q ss_pred HHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
.........+.+|.....|. .++.+.+. .....+++.++++.+||.+.+++.+.+|||||+|||+|||||+.+|
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~---~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPH---YKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred cchhhCCEEEEcCCcccCCC---CcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00000011222333222221 12222221 1123456889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+..+..+.+.|+++.++ +.|||+||||++++..+||++++|..
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~ 204 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ 204 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999875 89999999999999999999999964
No 422
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-34 Score=295.90 Aligned_cols=203 Identities=19% Similarity=0.283 Sum_probs=142.6
Q ss_pred eEEEecCCcccCCCceEEeCCCc----eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNT----FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~----f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 143 (605)
.|++.|| +++|+... ..+++++ .+++||++||+|+||||||||+|+|+|+++|+.|++...
T Consensus 6 ~l~i~nl--------~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~------ 71 (289)
T PRK13645 6 DIILDNV--------SYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVG------ 71 (289)
T ss_pred eEEEEEE--------EEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC------
Confidence 4566665 44565321 2456665 458999999999999999999999999999999987421
Q ss_pred hhhhccchhhh----h-HHHHHHHHHHHhhcccccc--cchhhhhchhh--hh---cCchHHHHHHHHHHhhcCCc-hhh
Q 040300 144 LTYFRGSELQN----Y-FTRILEDNLKAIIKPQYVD--HIPKAVQGNVG--QV---LDQKDERDMKADLCTDLDLN-QVI 210 (605)
Q Consensus 144 ~~~~~g~~l~~----~-~~~~~~~~~~~~~~~q~~~--~~~~~~~~~v~--~~---l~~~~~~~~~~~~l~~l~L~-~~~ 210 (605)
|.++.. . ...... -..++.+|... ..+..+..++. .. ........++.++++.++|. ++.
T Consensus 72 -----g~~i~~~~~~~~~~~~~~--~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~ 144 (289)
T PRK13645 72 -----DYAIPANLKKIKEVKRLR--KEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV 144 (289)
T ss_pred -----CEEccccccccccHHHHh--ccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 111100 0 000000 00111111100 00000000000 00 01122235677899999994 789
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ ++|||+||||++++..+||++++|
T Consensus 145 ~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l 224 (289)
T PRK13645 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224 (289)
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999764 899999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+++
T Consensus 225 ~~G 227 (289)
T PRK13645 225 HEG 227 (289)
T ss_pred ECC
Confidence 753
No 423
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.3e-34 Score=286.35 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=140.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL--KPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l--~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
+++++|+.. ..|++++ .+++||+++|+|+||||||||+|+|+|++ +|+.|++... |..+..+...
T Consensus 5 ~l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~-----------g~~~~~~~~~ 72 (243)
T TIGR01978 5 DLHVSVEDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK-----------GQDLLELEPD 72 (243)
T ss_pred eEEEEECCE-EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEEC-----------CEecCCCCHH
Confidence 456677642 4566666 46899999999999999999999999995 7999988521 1111110000
Q ss_pred HHHHHHHHhhcccccccchhh-hhchhh---hh---------cCchHHHHHHHHHHhhcCCc-hhhcccCC-CCChHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPKA-VQGNVG---QV---------LDQKDERDMKADLCTDLDLN-QVIDRNVG-DLSGGELQ 223 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~-~~~~v~---~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~-~LSGGe~Q 223 (605)
.. .....++.+|.....+.. +...+. .. .......+++.++++.++|. ...++.+. +|||||+|
T Consensus 73 ~~-~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 73 ER-ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred Hh-hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 00 000011112221111110 000000 00 01112245678899999997 57888887 59999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh-cCEEEEEeC
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL-SDFICCLYG 291 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~-~D~i~vl~g 291 (605)
|++||+||+.+|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+ ||++++|++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 99999999999999999999999999999999999999987789999999999999998 899999974
No 424
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-34 Score=285.84 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=142.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~~~~l--------~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~----------- 64 (237)
T PRK11614 5 MLSFDKV--------SAHYGKI-QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF----------- 64 (237)
T ss_pred EEEEEeE--------EEeeCCc-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE-----------
Confidence 4666665 4456532 3455555 45899999999999999999999999999999998752
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh--h-cCchHHHHHHHHHHhhc-CCchhhcccCCCCChHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ--V-LDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGEL 222 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~--~-l~~~~~~~~~~~~l~~l-~L~~~~dr~v~~LSGGe~ 222 (605)
.|..+........ ......+.+|.....+. .+..++.. . .........+.++++.+ ++.+..++++.+|||||+
T Consensus 65 ~g~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~ 143 (237)
T PRK11614 65 DGKDITDWQTAKI-MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQ 143 (237)
T ss_pred CCEecCCCCHHHH-HHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHH
Confidence 2221111000000 00001122222111111 11111100 0 01112234566778888 588888899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||++||+||+.+|++|||||||++||+..+..+.++|+++.++|.|||++|||++++..+||++++|+.
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeC
Confidence 999999999999999999999999999999999999999987799999999999999999999999964
No 425
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.5e-34 Score=281.77 Aligned_cols=177 Identities=25% Similarity=0.353 Sum_probs=133.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK- 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~- 178 (605)
+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++.... . . ....++.+|.....+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~-~-~--~~~i~~v~q~~~~~~~~ 85 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV-----------NDQSHTGLA-P-Y--QRPVSMLFQENNLFAHL 85 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-----------CCEEcccCC-h-h--ccceEEEeccCccCCCC
Confidence 3699999999999999999999999999999998852 121111100 0 0 0011122222111111
Q ss_pred hhhchhhhh----c-CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 040300 179 AVQGNVGQV----L-DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253 (605)
Q Consensus 179 ~~~~~v~~~----l-~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~ 253 (605)
.+..++... . .....+.++.++++.++|++..++.+.+|||||+||++||+||+.+|+++||||||++||+.++.
T Consensus 86 t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 165 (213)
T TIGR01277 86 TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLRE 165 (213)
T ss_pred cHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 111111100 0 01123456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 254 KAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 254 ~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+.++|+++.++ +.|||+|||+++++..+||++++|..
T Consensus 166 ~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~ 204 (213)
T TIGR01277 166 EMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204 (213)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC
Confidence 999999999764 89999999999999999999999964
No 426
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-34 Score=289.15 Aligned_cols=202 Identities=25% Similarity=0.305 Sum_probs=141.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
.|++.|+ +++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|++. |+.|++..
T Consensus 6 ~l~~~~l--------~~~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~------ 70 (253)
T PRK14242 6 KMEARGL--------SFFYGDF-QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL------ 70 (253)
T ss_pred EEEEeee--------EEEECCe-eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE------
Confidence 4666665 4566542 3455555 457999999999999999999999999864 58898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhh---h--c-CchHHHHHHHHHHhhcCCc----hhhcc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---V--L-DQKDERDMKADLCTDLDLN----QVIDR 212 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---~--l-~~~~~~~~~~~~l~~l~L~----~~~dr 212 (605)
.|.++.........-....++.+|.....+..+..++.. . . ......+++.++++.+++. ..+++
T Consensus 71 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14242 71 -----DGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHE 145 (253)
T ss_pred -----CCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhC
Confidence 222111000000000001122233221111111111110 0 0 1112345678889999984 35789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 146 ~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999965 79999999999999999999999964
No 427
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.8e-34 Score=279.46 Aligned_cols=189 Identities=18% Similarity=0.225 Sum_probs=139.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+...... ..
T Consensus 7 l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~-----------~g~~~~~~~~~-~~ 73 (204)
T PRK13538 7 LACERDER-ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW-----------QGEPIRRQRDE-YH 73 (204)
T ss_pred EEEEECCE-EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEEcccchHH-hh
Confidence 44556542 3455555 45899999999999999999999999999999999852 22221110000 00
Q ss_pred HHHHHhhcccccccchhhhhchhhhhc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. ...+.+|.....+. .++.+.+ .......+++++++.+||.+..++++.+|||||+||++||+||+++|
T Consensus 74 ~--~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 74 Q--DLLYLGHQPGIKTE---LTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred h--heEEeCCccccCcC---CcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 0 11111221111111 0121111 01123456788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+++||||||++||+.++..+.++|+++.+.+.|||+||||+++++...+|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999777899999999999999988888776
No 428
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.5e-34 Score=304.88 Aligned_cols=199 Identities=24% Similarity=0.279 Sum_probs=148.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc----hhhhhH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS----ELQNYF 156 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~----~l~~~~ 156 (605)
++.++||.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... |. ++....
T Consensus 29 ~~~~~~g~~-~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~id-----------G~~~~~~i~~~~ 96 (382)
T TIGR03415 29 EILDETGLV-VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVK-----------DGDGSIDVANCD 96 (382)
T ss_pred HHHHhhCCE-EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC-----------CEecccccccCC
Confidence 345667654 3466666 468999999999999999999999999999999998522 21 110000
Q ss_pred HHHHHH--HHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHH
Q 040300 157 TRILED--NLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 157 ~~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA 228 (605)
.....+ .....+.+|.....|. .+..++... +.....+.++.++++.+||.+..++++.+|||||+|||+||
T Consensus 97 ~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LA 176 (382)
T TIGR03415 97 AATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLA 176 (382)
T ss_pred HHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 000000 0112333343333331 122222110 11223356788999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||+.+|++|||||||++||+..+.++.+.|.++.++ ++|||+||||++++..+||+|++|+++
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G 241 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGG 241 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999875 899999999999999999999999753
No 429
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=286.50 Aligned_cols=200 Identities=21% Similarity=0.299 Sum_probs=158.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc-----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI----------- 410 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~----------- 410 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +...
T Consensus 23 ~~~~~~~-~vl~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~ 96 (265)
T PRK14252 23 NFYYGGY-QALKNINMMVHEK-----QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIE 96 (265)
T ss_pred EEEECCe-eeeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHH
Confidence 7778753 4789999999888 78999999999999999999999985 688874 1111
Q ss_pred CcceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC----CHHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHH
Q 040300 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT----HPQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 411 ~~~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~----~~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
....++|++|+.... ..|+.+++..... .... ....+.++++.+++ .+..++.+.+|||||+|||+||||
T Consensus 97 ~~~~i~~~~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 97 VRMRISMVFQKPNPF-PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred HhccEEEEccCCcCC-cchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 023589999986544 4599887753211 1111 12345667777776 356788999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++++++.. ...++++++..
T Consensus 176 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-~~tiiivth~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 249 (265)
T PRK14252 176 LATDPEILLFDEPTSALDPIATASIEELISDLK-N-KVTILIVTHNMQQAARVSDYTAYMYMGEL--IEFGATDTIFI 249 (265)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 999999999999999999999999999999984 3 68999999999999999999999986543 34577777654
No 430
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=284.45 Aligned_cols=201 Identities=20% Similarity=0.304 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+.. |++|++. +..+. .
T Consensus 10 ~~~~~~-~~~l~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 10 NTYFDD-AHILKNVNLDIPKN-----SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EEEeCC-eEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 667765 34689999998888 7899999999999999999999874 3889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+... +..|+.+++...... .... ...+.++++.+++. ...++++.+|||||+|||+|||||+
T Consensus 84 ~~i~~~~q~~~~-~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 84 KKVGMVFQKPNP-FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hheEEEecCCcc-CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 359999998654 345898877532111 1111 23456778888873 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+||++++++++.. ...+++.++...
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i--~~~g~~~~~~~~ 235 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEI--IESGLTDQIFIN 235 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 345777777543
No 431
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-33 Score=297.04 Aligned_cols=208 Identities=24% Similarity=0.351 Sum_probs=145.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC---CceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN---LGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~ 144 (605)
.|+|.||.+.+... +...-.+++++ .+.+||++||+|+||||||||+++|+|+++|+ .|+|.
T Consensus 12 ~L~i~~l~~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~--------- 77 (330)
T PRK09473 12 LLDVKDLRVTFSTP-----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT--------- 77 (330)
T ss_pred eEEEeCeEEEEecC-----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE---------
Confidence 57777776544210 01112345555 35799999999999999999999999999996 89874
Q ss_pred hhhccchhhhhHHHHHHHHH--HHhhccccc--ccchhh-hhchhhhh------cCchHHHHHHHHHHhhcCCch---hh
Q 040300 145 TYFRGSELQNYFTRILEDNL--KAIIKPQYV--DHIPKA-VQGNVGQV------LDQKDERDMKADLCTDLDLNQ---VI 210 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~--~~~~~~q~~--~~~~~~-~~~~v~~~------l~~~~~~~~~~~~l~~l~L~~---~~ 210 (605)
|.|.++..+......... ...+.+|.. ...|.. +...+.+. ....+...++.++++.++|.+ .+
T Consensus 78 --~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~ 155 (330)
T PRK09473 78 --FNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM 155 (330)
T ss_pred --ECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHh
Confidence 223222211100000000 011122221 001111 01111111 112234567888999999964 46
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++++.+|||||+|||+||+||+.+|++||+||||++||+..+..++++|+++.++ |.|+|+||||++++.++||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm 235 (330)
T PRK09473 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235 (330)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 8899999999999999999999999999999999999999999999999999875 899999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+.+
T Consensus 236 ~~G 238 (330)
T PRK09473 236 YAG 238 (330)
T ss_pred ECC
Confidence 854
No 432
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-34 Score=264.26 Aligned_cols=202 Identities=25% Similarity=0.390 Sum_probs=151.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC----------
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP---------- 137 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~---------- 137 (605)
||.+.||- ++||... .|.+++ .-+.|+++.|||.+||||||+|++|.=+.+|+.|.|.-.
T Consensus 6 ~l~v~dlH--------K~~G~~e-VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 6 ALEVEDLH--------KRYGEHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ceehhHHH--------hhcccch-hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCC
Confidence 67777654 4788763 466776 458999999999999999999999999999999987411
Q ss_pred ------CChhhhhhhhc---cchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCch
Q 040300 138 ------PDWQEILTYFR---GSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 138 ------~~~~~~~~~~~---g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.++..+ ..++ |..+|++.- ...+... +++-..|..+. -..+.+..++++.+|.++||.+
T Consensus 77 ~G~l~~ad~~q~-~r~Rs~L~mVFQ~FNL---WsHmtvL---eNViEaPvhVL-----g~~k~ea~e~Ae~~L~kVGi~e 144 (256)
T COG4598 77 DGQLKPADKRQL-QRLRTRLGMVFQHFNL---WSHMTVL---ENVIEAPVHVL-----GVSKAEAIERAEKYLAKVGIAE 144 (256)
T ss_pred CCCeeeCCHHHH-HHHHHHhhHhhhhcch---hHHHHHH---HHHHhcchHhh-----cCCHHHHHHHHHHHHHHhCchh
Confidence 112111 1111 122222110 0000000 00101111110 0234556788999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
..+.++..|||||+||++|||||+.+|++++||||||.|||+-.-+++++|++|+++|+|+++|||.+.++..++.+|+.
T Consensus 145 k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~f 224 (256)
T COG4598 145 KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIF 224 (256)
T ss_pred hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 225 Lh~ 227 (256)
T COG4598 225 LHQ 227 (256)
T ss_pred eec
Confidence 963
No 433
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.8e-33 Score=275.12 Aligned_cols=166 Identities=25% Similarity=0.279 Sum_probs=138.1
Q ss_pred eeecCC-----ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--cccc----Cccee
Q 040300 349 RYKYPT-----MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEI----PEFNV 415 (605)
Q Consensus 349 ~~~y~~-----~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~----~~~~i 415 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+++|+|++ +|++|++. +... ....+
T Consensus 10 s~~~~~~~~~~~~~~l~~~~~~i~~G-----e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i 84 (194)
T cd03213 10 TVTVKSSPSKSGKQLLKNVSGKAKPG-----ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84 (194)
T ss_pred EEEEecCCCcccccceecceEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheE
Confidence 667764 134788999998888 789999999999999999999999 99999875 2222 12468
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
+|++|+.......|+.+++..... + .+|||||+|||+|||||+.+|++|||||||
T Consensus 85 ~~~~q~~~~~~~~t~~~~i~~~~~---------------~----------~~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 85 GYVPQDDILHPTLTVRETLMFAAK---------------L----------RGLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred EEccCcccCCCCCcHHHHHHHHHH---------------h----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 999998765555788887632100 0 189999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HHHhhcCEEEEEeCCc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVYEGQP 545 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~-~~~~~adrviv~~g~~ 545 (605)
++||+.++..+.++|+++.. .+.|+|++|||++ ++..+|||+++|+++.
T Consensus 140 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 140 SGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 99999999999999999854 4899999999996 7888999999998654
No 434
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=269.27 Aligned_cols=195 Identities=31% Similarity=0.446 Sum_probs=143.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++..+.. -+++++ ..++||+++|+||||||||||||.|+|.+.|+.|++.. .|..+..+....+.
T Consensus 7 ls~~~~Gr~-ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~-----------~g~~l~~~~~~~lA 74 (259)
T COG4559 7 LSYSLAGRR-LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL-----------NGVPLNSWPPEELA 74 (259)
T ss_pred eEEEeecce-eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEee-----------CCcChhhCCHHHHH
Confidence 444444332 245555 35899999999999999999999999999999999852 22222222111111
Q ss_pred HHHHHhhccccccc-chhhhhchhhh-hc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHcc
Q 040300 162 DNLKAIIKPQYVDH-IPKAVQGNVGQ-VL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQ 233 (605)
Q Consensus 162 ~~~~~~~~~q~~~~-~~~~~~~~v~~-~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~ 233 (605)
. ..+..||+... +|..+...|.- .. +..++.+.+++++...++.++..|...+|||||+|||.+||+|++
T Consensus 75 ~--~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 R--HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred H--HhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 1 12233554321 22222211110 00 111344568889999999999999999999999999999999986
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 234 ------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 234 ------~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++++|+||||||.||+..+..++++.++|+++|..|+.|=|||+....+||+|++|..
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~ 216 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQ 216 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeC
Confidence 3358999999999999999999999999999999999999999999999999999953
No 435
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=292.36 Aligned_cols=200 Identities=21% Similarity=0.332 Sum_probs=158.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+. .
T Consensus 52 ~~~~~~-~~iL~~is~~i~~G-----e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~ 125 (305)
T PRK14264 52 DVYYGD-DHALKGVSMDIPEK-----SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125 (305)
T ss_pred EEEeCC-eeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 777875 34688999998887 7899999999999999999999986 6899875 22111 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-------------CCC----CHHHHHHHHhhcCCc----hhhccCcCcCChh
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-------------SYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGG 471 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-------------~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGG 471 (605)
..++|++|+... +..|+++++...... ... ....+.++++.+++. ...++++.+||||
T Consensus 126 ~~i~~v~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 126 KRVGMVFQSPNP-FPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hceEEEccCCcc-ccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 359999998653 446999887532110 000 123466788888874 5678899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE-EEeCCcceeee
Q 040300 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI-VYEGQPSVDCV 550 (605)
Q Consensus 472 e~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi-v~~g~~~~~~~ 550 (605)
|+|||+|||||+++|+||||||||+|||+.++..+.++|+++.+ +.|||+||||++++..+|||++ +++++.. ..
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i--~~ 280 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGEL--VE 280 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEE--EE
Confidence 99999999999999999999999999999999999999999854 4899999999999999999975 5675433 34
Q ss_pred cCChhhhhc
Q 040300 551 ANAPQSLLT 559 (605)
Q Consensus 551 ~~~p~~~~~ 559 (605)
.+++++++.
T Consensus 281 ~g~~~~~~~ 289 (305)
T PRK14264 281 YDDTDKIFE 289 (305)
T ss_pred eCCHHHHHh
Confidence 577777654
No 436
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.7e-33 Score=281.59 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=141.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ +|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 7 ~i~~~~l~~--------~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~----------- 66 (225)
T PRK10247 7 LLQLQNVGY--------LAGDA-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF----------- 66 (225)
T ss_pred eEEEeccEE--------eeCCc-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE-----------
Confidence 466666554 55432 2455555 35799999999999999999999999999999998852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhh---hhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQ 223 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~Q 223 (605)
.|..+..+...... ...++.+|.....+..+..++. ..........++.++++.+++. ...++++.+|||||+|
T Consensus 67 ~g~~~~~~~~~~~~--~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 144 (225)
T PRK10247 67 EGEDISTLKPEIYR--QQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQ 144 (225)
T ss_pred CCEEcCcCCHHHHH--hccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence 12111110000000 0111222221111111111110 0001112345677899999996 5889999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|++||+||+.+|++|||||||++||+.++..+.+.|+++.++ +.|||++|||++++. .||++++|.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 999999999999999999999999999999999999999764 899999999999997 599999995
No 437
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.4e-34 Score=281.70 Aligned_cols=194 Identities=20% Similarity=0.210 Sum_probs=142.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|.+.||.+ +|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++...
T Consensus 11 ~l~~~~l~~--------~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~---------- 71 (214)
T PRK13543 11 LLAAHALAF--------SRNEE-PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID---------- 71 (214)
T ss_pred eEEEeeEEE--------ecCCc-eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC----------
Confidence 466666544 45432 2344444 347999999999999999999999999999999998522
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
|..+.... ... ...+.+|.....+.. ++.+.+ ......+.+.++++.++|.+.+++.+.+|||||
T Consensus 72 -g~~i~~~~---~~~--~i~~~~q~~~~~~~~---t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 142 (214)
T PRK13543 72 -GKTATRGD---RSR--FMAYLGHLPGLKADL---STLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQ 142 (214)
T ss_pred -CEEccchh---hhh--ceEEeecCcccccCC---cHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHH
Confidence 21111000 000 011112211111100 111111 111233456788999999988999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+||++||+|++.+|++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||+++++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999998778999999999999999999999985
No 438
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.1e-34 Score=279.13 Aligned_cols=190 Identities=23% Similarity=0.246 Sum_probs=141.2
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+..... ..
T Consensus 5 ~l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~-~~ 71 (201)
T cd03231 5 ELTCERDGR-ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL-----------NGGPLDFQRD-SI 71 (201)
T ss_pred EEEEEeCCc-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEecccccH-Hh
Confidence 355566543 3455665 45799999999999999999999999999999999852 1211110000 00
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
.. ..++.+|.....+ ..++.+.+ ......++++++++.+++.+..++++.+|||||+||++||+||+.+|++
T Consensus 72 ~~--~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 72 AR--GLLYLGHAPGIKT---TLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred hh--heEEeccccccCC---CcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00 1122222211111 11222221 1111345678899999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+||||||++||+..+..+.+.|+++.++|.|+|+||||...+...+++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998777899999999999999999999887
No 439
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.8e-33 Score=281.08 Aligned_cols=189 Identities=24% Similarity=0.336 Sum_probs=136.3
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC--CChhhhhhhhccchhhhhHHHHHHH--HHHH
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP--PDWQEILTYFRGSELQNYFTRILED--NLKA 166 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~--~~~~~~~~~~~g~~l~~~~~~~~~~--~~~~ 166 (605)
..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... ..+. ++..+....... ....
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~---------~~~~~~~~~~~~~~~~~i 92 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWV---------DLAQASPREVLEVRRKTI 92 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCcc---------chhhcCHHHHHHHHhcce
Confidence 4566666 468999999999999999999999999999999998531 1000 111000000000 0011
Q ss_pred hhcccccccchhh-hhchhhhh-----cCchHHHHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 167 IIKPQYVDHIPKA-VQGNVGQV-----LDQKDERDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 167 ~~~~q~~~~~~~~-~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
++.+|.....+.. +...+... .......+++.++++.++|.+ ..++++.+|||||+||++||+||+.+|++||
T Consensus 93 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 172 (224)
T TIGR02324 93 GYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILL 172 (224)
T ss_pred EEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2223322211110 00111100 111223456788999999976 5689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
|||||++||+.++..+.++|+++.++|.|||+||||++++..+||+++.+
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 173 LDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999777899999999999999999999876
No 440
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-33 Score=280.75 Aligned_cols=195 Identities=25% Similarity=0.372 Sum_probs=138.9
Q ss_pred EEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 70 IQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 70 i~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
|++.||. ++|+.. ...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++. +
T Consensus 3 l~~~~l~--------~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-----------~ 63 (220)
T cd03245 3 IEFRNVS--------FSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL-----------L 63 (220)
T ss_pred EEEEEEE--------EEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE-----------E
Confidence 5566654 455431 22344554 3579999999999999999999999999999999885 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccC----------
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNV---------- 214 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v---------- 214 (605)
.|..+......... -...+.+|.....+ .++.+.+. .......+.++++.+++.+.+++.+
T Consensus 64 ~g~~~~~~~~~~~~--~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 137 (220)
T cd03245 64 DGTDIRQLDPADLR--RNIGYVPQDVTLFY----GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGER 137 (220)
T ss_pred CCEEhHHCCHHHHH--hhEEEeCCCCcccc----chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCC
Confidence 23222211000000 01122233221111 12332221 1111335667888889988777754
Q ss_pred -CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 215 -GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 215 -~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+. .|||+||||++++ .+||++++|..
T Consensus 138 ~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~~ 213 (220)
T cd03245 138 GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMDS 213 (220)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEeC
Confidence 699999999999999999999999999999999999999999999999764 8999999999987 69999999964
No 441
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.9e-34 Score=285.72 Aligned_cols=192 Identities=24% Similarity=0.325 Sum_probs=139.5
Q ss_pred EEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHH
Q 040300 85 HRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163 (605)
Q Consensus 85 ~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 163 (605)
++|+.. ..|++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... |......... ...
T Consensus 29 ~~~~~~-~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~-----------g~~~~~~~~~-~~~- 94 (236)
T cd03267 29 RKYREV-EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA-----------GLVPWKRRKK-FLR- 94 (236)
T ss_pred cccCCe-eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC-----------CEEccccchh-hcc-
Confidence 455554 3566776 468999999999999999999999999999999998521 1111000000 000
Q ss_pred HHHhhcc-cccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 164 LKAIIKP-QYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 164 ~~~~~~~-q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
...+.+ |.....+. .+...+. .. ........++.++++.++|.+.+++++.+|||||+||++||+||+.+|+
T Consensus 95 -~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 173 (236)
T cd03267 95 -RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPE 173 (236)
T ss_pred -cEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 011111 10000000 0000110 00 1112234567789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||||||++||+..+..+.++|+++.++ +.|||+||||++++..+||++++|+.
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 174 ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229 (236)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999764 89999999999999999999999964
No 442
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.4e-34 Score=290.76 Aligned_cols=186 Identities=21% Similarity=0.242 Sum_probs=136.0
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQ 171 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q 171 (605)
.+.+++ .+++||+++|+|+||||||||+++|+|+++|+.|++.. .|.++........ ....++.+|
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~--~~~i~~v~q 94 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI-----------DDHPLHFGDYSYR--SQRIRMIFQ 94 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEE-----------CCEECCCCchhhH--hccEEEEec
Confidence 455666 46899999999999999999999999999999999852 1111110000000 001112222
Q ss_pred ccc--cchh-hhhchh----hh--hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 172 YVD--HIPK-AVQGNV----GQ--VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 172 ~~~--~~~~-~~~~~v----~~--~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
... ..+. .+...+ .. .+......+.+.++++.+||. ...++.+.+|||||+||++||+||+.+|++||||
T Consensus 95 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (267)
T PRK15112 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD 174 (267)
T ss_pred CchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 110 0000 000000 00 011223345678899999994 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|.+
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 225 (267)
T PRK15112 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ 225 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999864 89999999999999999999999964
No 443
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-33 Score=275.03 Aligned_cols=180 Identities=20% Similarity=0.296 Sum_probs=146.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---cceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---EFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---~~~i~y~~q~~~ 423 (605)
+++|++ ...+ +++|++.+| |+++|+|+||||||||+++|+|+.+|++|++. +.... ...++|++|...
T Consensus 8 ~~~~~~-~~l~-~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 8 QFNIEQ-KNLF-DLSITFLPS-----AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred eEEECC-cEEE-EEEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 666764 2234 488888877 79999999999999999999999999999875 22221 234899999876
Q ss_pred CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040300 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~ 503 (605)
..+..|+.+++...... ......+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++
T Consensus 81 ~~~~~tv~~~l~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 81 LKLEMTVFENLKFWSEI-YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred CCccCCHHHHHHHHHHh-cccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 66778999987532111 12234567788999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEE
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrv 538 (605)
..+.++|++.. +.+.|+|+||||..++.. ||.+
T Consensus 160 ~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 160 DLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence 99999998764 468999999999998875 6655
No 444
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=287.13 Aligned_cols=204 Identities=23% Similarity=0.293 Sum_probs=144.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC---ceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL---GRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~ 144 (605)
+|++.||.+ +|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+. |++.
T Consensus 4 ~l~~~nl~~--------~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~--------- 65 (262)
T PRK09984 4 IIRVEKLAK--------TFNQH-QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE--------- 65 (262)
T ss_pred EEEEeeEEE--------EeCCe-EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEE---------
Confidence 577777654 45432 2355555 357999999999999999999999999999874 8874
Q ss_pred hhhccchhhhhH---HHHHHHHHHHhhcccccccchh-hhhchhhh-------h------cCchHHHHHHHHHHhhcCCc
Q 040300 145 TYFRGSELQNYF---TRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------V------LDQKDERDMKADLCTDLDLN 207 (605)
Q Consensus 145 ~~~~g~~l~~~~---~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~------l~~~~~~~~~~~~l~~l~L~ 207 (605)
+.|..+.... ..........++.+|.....+. .+...+.. . ......+.++.++++.+|+.
T Consensus 66 --~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 143 (262)
T PRK09984 66 --LLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV 143 (262)
T ss_pred --ECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH
Confidence 1222111000 0000000011222232211111 01111100 0 00122345788999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEE
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i 286 (605)
+..++.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++
T Consensus 144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8999999999999999999999999999999999999999999999999999999764 899999999999999999999
Q ss_pred EEEeCc
Q 040300 287 CCLYGK 292 (605)
Q Consensus 287 ~vl~g~ 292 (605)
++|+.+
T Consensus 224 ~~l~~g 229 (262)
T PRK09984 224 VALRQG 229 (262)
T ss_pred EEEECC
Confidence 999743
No 445
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.7e-33 Score=287.37 Aligned_cols=204 Identities=27% Similarity=0.381 Sum_probs=143.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|+.+ +|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++...
T Consensus 6 ~l~~~~l~~--------~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~---------- 66 (258)
T PRK11701 6 LLSVRGLTK--------LYGPR-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR---------- 66 (258)
T ss_pred eEEEeeeEE--------EcCCc-eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC----------
Confidence 466666554 55432 3445555 357999999999999999999999999999999998521
Q ss_pred ccch-----hhhhHHHHHHH--HHHHhhcccccc--cchh-hhhchhhhh---c---CchHHHHHHHHHHhhcCCc-hhh
Q 040300 148 RGSE-----LQNYFTRILED--NLKAIIKPQYVD--HIPK-AVQGNVGQV---L---DQKDERDMKADLCTDLDLN-QVI 210 (605)
Q Consensus 148 ~g~~-----l~~~~~~~~~~--~~~~~~~~q~~~--~~~~-~~~~~v~~~---l---~~~~~~~~~~~~l~~l~L~-~~~ 210 (605)
|.. +..+....... .....+.+|... ..+. ....++... . .......++.++++.+++. ..+
T Consensus 67 -g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 145 (258)
T PRK11701 67 -MRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARI 145 (258)
T ss_pred -CccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHH
Confidence 111 11100000000 000112222210 0000 000111110 0 1112345678899999997 478
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|+++.++ |.|||+||||++++..+||++++|
T Consensus 146 ~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225 (258)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999999999998765 899999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+.+
T Consensus 226 ~~g 228 (258)
T PRK11701 226 KQG 228 (258)
T ss_pred ECC
Confidence 753
No 446
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.7e-34 Score=287.99 Aligned_cols=190 Identities=24% Similarity=0.408 Sum_probs=142.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++...... .+.+.
T Consensus 4 ~l~~~~l~--------~~~~~~-~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~--~i~~v 72 (251)
T PRK09544 4 LVSLENVS--------VSFGQR-RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL--RIGYV 72 (251)
T ss_pred EEEEeceE--------EEECCc-eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc--CEEEe
Confidence 57776654 455532 2455555 357999999999999999999999999999999998532100 01110
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
.|+ ....+. ...++.+.+ ......+++.++++.+++.+.+++++.+|||||+||+
T Consensus 73 ----~q~------------------~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv 129 (251)
T PRK09544 73 ----PQK------------------LYLDTT-LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRV 129 (251)
T ss_pred ----ccc------------------cccccc-cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH
Confidence 111 000000 000111110 0001134567899999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+++
T Consensus 130 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~ 197 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHH 197 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCc
Confidence 9999999999999999999999999999999999999765 899999999999999999999999753
No 447
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.5e-33 Score=275.66 Aligned_cols=178 Identities=24% Similarity=0.371 Sum_probs=143.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~ 418 (605)
.+.|+.. ...+++++|++.+| |+++|+|+||||||||+++|+|+.+|++|++. +... + ...++|+
T Consensus 13 ~~~~~~~~~~~l~~isl~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 87 (207)
T cd03369 13 SVRYAPDLPPVLKNVSFKVKAG-----EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTII 87 (207)
T ss_pred EEEeCCCCcccccCceEEECCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEE
Confidence 6667642 24688999999888 68999999999999999999999999999875 2211 1 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+... +..|+.+++... ... ....+.+.++ .++++.+|||||+|||+|||||+.+|++|||||||++|
T Consensus 88 ~q~~~~-~~~tv~~~l~~~--~~~-~~~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 156 (207)
T cd03369 88 PQDPTL-FSGTIRSNLDPF--DEY-SDEEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156 (207)
T ss_pred ecCCcc-cCccHHHHhccc--CCC-CHHHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 998754 456999887421 111 2222333333 46789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+.++..++++|+++ . .+.|+|++|||++++.. |||+++|+++.
T Consensus 157 D~~~~~~l~~~l~~~-~-~~~tiii~th~~~~~~~-~d~v~~l~~g~ 200 (207)
T cd03369 157 DYATDALIQKTIREE-F-TNSTILTIAHRLRTIID-YDKILVMDAGE 200 (207)
T ss_pred CHHHHHHHHHHHHHh-c-CCCEEEEEeCCHHHHhh-CCEEEEEECCE
Confidence 999999999999997 3 38999999999999976 99999998644
No 448
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-33 Score=268.97 Aligned_cols=154 Identities=29% Similarity=0.509 Sum_probs=128.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G-----~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 7 SFSYPGRPKPVLKDVSLTIKPG-----EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEcCCCCcccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 5667643 13688999998888 68999999999999999999999999999875 22111 1248888
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+... +..|+.+++ |||||+|||+|||||+.+|++|||||||++|
T Consensus 82 ~~~~~~-~~~t~~e~l---------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 82 PQDPFL-FSGTIRENI---------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred cCCchh-ccchHHHHh---------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 887532 334555443 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|+.++..+.++|+++. + +.|+|++|||++++.. ||++++|+++
T Consensus 128 D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g 170 (171)
T cd03228 128 DPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDG 170 (171)
T ss_pred CHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCC
Confidence 9999999999999984 3 6999999999999987 9999999753
No 449
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.3e-33 Score=270.57 Aligned_cols=158 Identities=31% Similarity=0.444 Sum_probs=132.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~ 419 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|++
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 7 SFSYPEQEQQVLKNLSLELKQG-----EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEeCCCCccceEEEEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 5667643 13688999999888 78999999999999999999999999999875 21111 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
|+... +..|+++++ +.+|||||+|||+|||||+.+|++|||||||++||
T Consensus 82 q~~~~-~~~tv~~~i------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 82 QRPYL-FDTTLRNNL------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred cCCee-ecccHHHhh------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 97543 345665543 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+.++..++++|+++ . .+.|+|++|||.+++. .|||+++|+++.
T Consensus 131 ~~~~~~l~~~l~~~-~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~ 173 (178)
T cd03247 131 PITERQLLSLIFEV-L-KDKTLIWITHHLTGIE-HMDKILFLENGK 173 (178)
T ss_pred HHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHH-hCCEEEEEECCE
Confidence 99999999999998 3 3899999999999986 699999998654
No 450
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=285.00 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=142.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~ 142 (605)
+|++.|+. ++|+.. ..+++++ .+.+||+++|+|+||||||||+|+|+|+++|+ .|++..
T Consensus 7 ~l~~~~l~--------~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~------ 71 (254)
T PRK14273 7 IIETENLN--------LFYTDF-KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY------ 71 (254)
T ss_pred eEEEeeeE--------EEeCCc-eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE------
Confidence 67777654 456532 2455555 35799999999999999999999999999974 788742
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhhh---h---cCchHHHHHHHHHHhhcCC----chhh
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---V---LDQKDERDMKADLCTDLDL----NQVI 210 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L----~~~~ 210 (605)
.|..+.. ...... ....++.+|.....+..+..++.. . ......++++.++++.+++ .+.+
T Consensus 72 -----~g~~i~~~~~~~~~~--~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 144 (254)
T PRK14273 72 -----EGKNIYSNNFDILEL--RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL 144 (254)
T ss_pred -----CCEecccccccHHHH--hhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHH
Confidence 2221110 000000 001122222211111111111110 0 0112234567788888887 4568
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++.+.+|||||+||++|||||+.+|++|||||||++||+.++..++++|+++.+ +.|||+||||++++..+||++++|.
T Consensus 145 ~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 223 (254)
T PRK14273 145 NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFFL 223 (254)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999964 7999999999999999999999996
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
++
T Consensus 224 ~G 225 (254)
T PRK14273 224 NG 225 (254)
T ss_pred CC
Confidence 43
No 451
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=282.00 Aligned_cols=173 Identities=22% Similarity=0.361 Sum_probs=146.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
++++++||++..| |++||+|+||||||||.|+|+|+++|++|+|. |..+++.. .+
T Consensus 27 ~avd~Vsf~i~~g-----e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~----------f~g~~i~~---~~------- 81 (268)
T COG4608 27 KAVDGVSFSIKEG-----ETLGLVGESGCGKSTLGRLILGLEEPTSGEIL----------FEGKDITK---LS------- 81 (268)
T ss_pred EEecceeEEEcCC-----CEEEEEecCCCCHHHHHHHHHcCcCCCCceEE----------EcCcchhh---cc-------
Confidence 5788999999988 79999999999999999999999999999874 11111100 01
Q ss_pred hhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
.....+.+.++|+.+|+. +.+++++++|||||+||++|||||+.+|+++++|||+|+||+..+.++.++|+++.+
T Consensus 82 ----~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 82 ----KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred ----hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 011124577899999987 589999999999999999999999999999999999999999999999999999988
Q ss_pred cCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 516 HAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 516 ~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.|.|.++||||+..+.++||||+||.-+..+ ..++.++++..
T Consensus 158 ~~~lt~lFIsHDL~vv~~isdri~VMy~G~iV--E~g~~~~~~~~ 200 (268)
T COG4608 158 ELGLTYLFISHDLSVVRYISDRIAVMYLGKIV--EIGPTEEVFSN 200 (268)
T ss_pred HhCCeEEEEEEEHHhhhhhcccEEEEecCcee--EecCHHHHhhC
Confidence 88999999999999999999999999854443 34666777664
No 452
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=288.71 Aligned_cols=202 Identities=21% Similarity=0.270 Sum_probs=142.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~ 142 (605)
.|++.|+ +++|+.. ..|++++ .+++||+++|+|+||||||||+++|+|+++| +.|+|..
T Consensus 19 ~l~~~nl--------~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~------ 83 (267)
T PRK14235 19 KMRARDV--------SVFYGEK-QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL------ 83 (267)
T ss_pred eEEEEeE--------EEEECCE-EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE------
Confidence 4666665 4566542 3455555 3589999999999999999999999999975 8898852
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhh-----c--CchHHHHHHHHHHhhcCCch----hhc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV-----L--DQKDERDMKADLCTDLDLNQ----VID 211 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~-----l--~~~~~~~~~~~~l~~l~L~~----~~d 211 (605)
.|..+...-...........+.+|.....+..+..++... + .......++.++++.++|.+ .++
T Consensus 84 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 84 -----DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred -----CCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhh
Confidence 2221110000000000011222222111111111111100 0 11223456788999999953 578
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999999999999976 78999999999999999999999974
No 453
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=273.27 Aligned_cols=198 Identities=20% Similarity=0.356 Sum_probs=149.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.+...||.| +|+... .+++++ .+++||++||+|||||||||.+.++.|+++|++|++. +
T Consensus 4 ~L~a~~l~K--------~y~kr~-Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~-----------l 63 (243)
T COG1137 4 TLVAENLAK--------SYKKRK-VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL-----------L 63 (243)
T ss_pred EEEehhhhH--------hhCCee-eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE-----------E
Confidence 355556655 454431 233333 3479999999999999999999999999999999985 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhc-hhhhh----cC-----c--hHHHHHHHHHHhhcCCchhhcccCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG-NVGQV----LD-----Q--KDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~v~~~----l~-----~--~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.+.++..... ..++-....|+.|.+..+.+ +|.+. ++ . ...+.+++++++.|.|.++.+++..
T Consensus 64 d~~diT~lPm-----~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 64 DDEDITKLPM-----HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred CCcccccCCh-----HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc
Confidence 2222221110 00111222344444444433 33322 11 1 1223457799999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||||||+|+.|||||+.+|++++||||+++.||.+..++.++|+.|+..|..|+++.|+..+...+|||..+++.
T Consensus 139 sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 139 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999963
No 454
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=8.7e-34 Score=283.20 Aligned_cols=189 Identities=23% Similarity=0.284 Sum_probs=140.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++... |..+....
T Consensus 5 ~v~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~-----------~~~~~~~~---- 68 (223)
T TIGR03740 5 NLSKRFGKQ-TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD-----------GHPWTRKD---- 68 (223)
T ss_pred eEEEEECCE-EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC-----------CEeccccc----
Confidence 455566543 2455555 357999999999999999999999999999999987521 11110000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
.....+.+|.....+. .++.+.+. ......++.++++.++|++.+++.+.+|||||+||++||+|++.+|
T Consensus 69 --~~~~~~~~q~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 69 --LHKIGSLIESPPLYEN---LTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred --cccEEEEcCCCCcccc---CCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 0001111221111110 01111110 0011346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||++++|..
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 199 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISE 199 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeC
Confidence 99999999999999999999999999977789999999999999999999999964
No 455
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.1e-33 Score=265.23 Aligned_cols=153 Identities=31% Similarity=0.436 Sum_probs=121.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +....+.. .
T Consensus 7 ~~~~~~~-~vl~~i~~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~---~~g~~~~~----------~ 67 (163)
T cd03216 7 TKRFGGV-KALDGVSLSVRRG-----EVHALLGENGAGKSTLMKILSGLYKPDSGEIL---VDGKEVSF----------A 67 (163)
T ss_pred EEEECCe-EEEeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEECCc----------C
Confidence 6778753 4788999998888 78999999999999999999999999999864 11111100 0
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~ 508 (605)
+..+.....+ + .+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 68 ~~~~~~~~~i-----------------~-------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 68 SPRDARRAGI-----------------A-------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred CHHHHHhcCe-----------------E-------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 1111110000 0 011199999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|+++.+ .+.|+|++|||++++..+|||+++|+++.
T Consensus 124 ~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 124 VIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGR 159 (163)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999854 48999999999999999999999998653
No 456
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=290.78 Aligned_cols=203 Identities=23% Similarity=0.307 Sum_probs=144.5
Q ss_pred eEEEecCCcccCCCceEEeCC-----CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP-----NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~-----~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~ 142 (605)
+|++.|| +++|+. +...|.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++...
T Consensus 4 ~l~~~~l--------~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~----- 70 (280)
T PRK13633 4 MIKCKNV--------SYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVD----- 70 (280)
T ss_pred eEEEeee--------EEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC-----
Confidence 5666665 445642 123566666 468999999999999999999999999999999988521
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccc--cchhhhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVD--HIPKAVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
|..+..... ........++.+|... ..+..+...+. .. ......++++.++++.+||.+.+++.+.
T Consensus 71 ------g~~i~~~~~-~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (280)
T PRK13633 71 ------GLDTSDEEN-LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH 143 (280)
T ss_pred ------CEecccccc-HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 111110000 0000000111122110 00000000110 00 1122335678899999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++.. ||++++|+.+
T Consensus 144 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G 220 (280)
T PRK13633 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSG 220 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999764 8999999999999986 9999999643
No 457
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.1e-33 Score=280.91 Aligned_cols=196 Identities=26% Similarity=0.412 Sum_probs=138.2
Q ss_pred eEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|+ +++|+.. ...+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++...
T Consensus 11 ~l~~~~l--------~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-------- 74 (226)
T cd03248 11 IVKFQNV--------TFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD-------- 74 (226)
T ss_pred eEEEEEE--------EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC--------
Confidence 5666665 4466432 12455555 357999999999999999999999999999999987521
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC------------chHHHHHHHHHHhhc--CCchhhc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD------------QKDERDMKADLCTDL--DLNQVID 211 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~------------~~~~~~~~~~~l~~l--~L~~~~d 211 (605)
|..+..+..... ....++.+|. +..+..++.+.+. .......+.++++.+ |+++.++
T Consensus 75 ---g~~~~~~~~~~~--~~~i~~~~q~----~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~ 145 (226)
T cd03248 75 ---GKPISQYEHKYL--HSKVSLVGQE----PVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG 145 (226)
T ss_pred ---CCchHHcCHHHH--HhhEEEEecc----cHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh
Confidence 111110000000 0001111111 1111111111110 001112346778888 8888899
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+.+|||||+||++||+||+.+|++|||||||++||+..+..+.++|+++.+ +.|||+||||++++.. ||+|++|++
T Consensus 146 ~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~ 223 (226)
T cd03248 146 EKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQILVLDG 223 (226)
T ss_pred cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999876 6899999999999975 999999964
No 458
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=285.59 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=142.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~ 142 (605)
+|++.|| +++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+ .|++..
T Consensus 4 ~l~~~~l--------~~~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~------ 68 (253)
T PRK14267 4 AIETVNL--------RVYYGSN-HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL------ 68 (253)
T ss_pred eEEEEeE--------EEEeCCe-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE------
Confidence 5666665 4466542 3466666 45899999999999999999999999999874 898742
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchh-hhhchhhhh--c-----CchHHHHHHHHHHhhcCCc----h
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV--L-----DQKDERDMKADLCTDLDLN----Q 208 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~--l-----~~~~~~~~~~~~l~~l~L~----~ 208 (605)
.|.++.. ....... ...++.+|.....+. .+..++... . .......++.++++.+++. +
T Consensus 69 -----~g~~i~~~~~~~~~~~--~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (253)
T PRK14267 69 -----FGRNIYSPDVDPIEVR--REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD 141 (253)
T ss_pred -----CCEEccccccChHHHh--hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh
Confidence 2222110 0000000 012222332221111 111111100 0 1122335677889999884 4
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ ++|||++|||++++..+||+|++
T Consensus 142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 142 RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEE
Confidence 67899999999999999999999999999999999999999999999999999975 69999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|..
T Consensus 221 l~~ 223 (253)
T PRK14267 221 LYL 223 (253)
T ss_pred EEC
Confidence 964
No 459
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-33 Score=282.72 Aligned_cols=192 Identities=24% Similarity=0.327 Sum_probs=142.9
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+......
T Consensus 5 ~l~~~~~~~-~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~-----------~g~~~~~~~~~-- 70 (232)
T cd03300 5 NVSKFYGGF-VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL-----------DGKDITNLPPH-- 70 (232)
T ss_pred eEEEEeCCe-eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEcCcCChh--
Confidence 456677643 3456666 46899999999999999999999999999999998742 11111100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
....++.+|.....+. .++.+.+ .......++.++++.+|+.+.+++.+.+|||||+||++||+||
T Consensus 71 --~~~i~~~~q~~~~~~~---~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 71 --KRPVNTVFQNYALFPH---LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred --hcceEEEecccccCCC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 0011111221111110 0111111 1122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|+++||||||++||+.++.++.++|+++.++ |.|||++||+++++..+||++++|+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999864 899999999999999999999999643
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.7e-33 Score=314.19 Aligned_cols=198 Identities=27% Similarity=0.366 Sum_probs=156.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|++......
T Consensus 11 s~~~~~~~~il~~is~~i~~G-----e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~--~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 11 SKVVPPKKEILKDISLSFFPG-----AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP--APGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEecCCCCeeecCceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe--cCCCEEEEEeccCCCCCCC
Confidence 777862234789999999888 689999999999999999999999999999741 1235799999997655567
Q ss_pred cHHHHHHhhhc-----------------cCCCC-----------------------HHHHHHHHhhcCCchhhccCcCcC
Q 040300 429 TVRHLLHQKIR-----------------DSYTH-----------------------PQFVSDVMKPLLIEQLMDQEVVNL 468 (605)
Q Consensus 429 tv~~~~~~~~~-----------------~~~~~-----------------------~~~~~~~l~~l~l~~~~~~~~~~L 468 (605)
|+.+++..... ..... ...+.++++.+++.. .++++.+|
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~L 162 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKL 162 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhc
Confidence 99887642110 00000 123455677788854 68899999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCccee
Q 040300 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVD 548 (605)
Q Consensus 469 SGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~ 548 (605)
||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++++.+...
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~- 237 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI- 237 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEE-
Confidence 999999999999999999999999999999999999999999875 359999999999999999999999854322
Q ss_pred eecCChhhhhc
Q 040300 549 CVANAPQSLLT 559 (605)
Q Consensus 549 ~~~~~p~~~~~ 559 (605)
...|++.++..
T Consensus 238 ~~~g~~~~~~~ 248 (552)
T TIGR03719 238 PWEGNYSSWLE 248 (552)
T ss_pred EecCCHHHHHH
Confidence 24466665433
No 461
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3e-33 Score=284.61 Aligned_cols=208 Identities=28% Similarity=0.367 Sum_probs=143.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Chhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~~~~ 146 (605)
+|++.|+ +++|+.. ..+.+++ .+++|++++|+|+||||||||+++|+|+++|+.|++.... .+..+
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--- 70 (253)
T TIGR02323 3 LLQVSGL--------SKSYGGG-KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAEL--- 70 (253)
T ss_pred eEEEeee--------EEEeCCc-eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccccccc---
Confidence 4666665 4466532 2355555 3579999999999999999999999999999999985211 00000
Q ss_pred hccchhhhhHHHHHHHH--HHHhhccccccc--chh-hhhchhhhh---c---CchHHHHHHHHHHhhcCCc-hhhcccC
Q 040300 147 FRGSELQNYFTRILEDN--LKAIIKPQYVDH--IPK-AVQGNVGQV---L---DQKDERDMKADLCTDLDLN-QVIDRNV 214 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~--~~~~~~~q~~~~--~~~-~~~~~v~~~---l---~~~~~~~~~~~~l~~l~L~-~~~dr~v 214 (605)
++..+........ ....+.+|.... .+. ....++... . ........+.++++.+++. ..+++.+
T Consensus 71 ----~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 146 (253)
T TIGR02323 71 ----ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP 146 (253)
T ss_pred ----ccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc
Confidence 0110000000000 001122221100 000 000111100 0 0112345678899999997 5899999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+.+
T Consensus 147 ~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999998764 899999999999999999999999643
No 462
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=282.11 Aligned_cols=195 Identities=22% Similarity=0.287 Sum_probs=139.9
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC---CCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK---PNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++ |+.|++.. .|.++......
T Consensus 8 l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~-----------~g~~i~~~~~~ 75 (246)
T PRK14269 8 LNLFYGKK-QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI-----------EGKDVKNQDVV 75 (246)
T ss_pred eEEEECCE-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEE-----------CCEecccCCHH
Confidence 45566542 3456665 457999999999999999999999999974 68998752 22221110000
Q ss_pred HHHHHHHHhhcccccccchhhhhchhh------hhc-CchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHHHHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVG------QVL-DQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~------~~l-~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~QRvaI 227 (605)
... ...++.+|.....+..+..++. ... .....+.++.++++.+++. +.+++.+.+|||||+||++|
T Consensus 76 ~~~--~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 76 ALR--KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HHh--hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 000 0112223322111111111110 000 1123345678899999994 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+.+|++|||||||++||+..+..+.+.|+++.+ +.|||+||||++++..+||++++|+.+
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 9999999999999999999999999999999999865 899999999999999999999999753
No 463
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-33 Score=271.48 Aligned_cols=164 Identities=23% Similarity=0.278 Sum_probs=135.3
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--cccc---CcceeEee
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEI---PEFNVSYK 418 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~---~~~~i~y~ 418 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+++|+|+. +|++|++. +... ....++|+
T Consensus 10 ~~~~~~~~~~~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~ 84 (192)
T cd03232 10 NYTVPVKGGKRQLLNNISGYVKPG-----TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYV 84 (192)
T ss_pred EEEecCCCCceEeEEccEEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEe
Confidence 667764 134688999988888 789999999999999999999986 48999875 2221 12368999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+....+..|+++++.... .++ +|||||+|||+|||||+.+|++|||||||++|
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~------------~~~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~L 139 (192)
T cd03232 85 EQQDVHSPNLTVREALRFSA------------LLR-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139 (192)
T ss_pred cccCccccCCcHHHHHHHHH------------HHh-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCC
Confidence 99876555579988874210 000 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HHHhhcCEEEEEeC
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVYEG 543 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~-~~~~~adrviv~~g 543 (605)
|+.++..++++|+++.+ .+.|+|+||||++ .+..+|||+++|++
T Consensus 140 D~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~ 184 (192)
T cd03232 140 DSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKR 184 (192)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcC
Confidence 99999999999999854 5899999999998 47789999999975
No 464
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=309.63 Aligned_cols=184 Identities=29% Similarity=0.384 Sum_probs=153.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|++. ..+++++|++.+| +++||||+||+|||||||+|+|.+.|++|+|. ..+..+++|++|+.......
T Consensus 10 s~~~g~~-~l~~~~~l~~~~G-----~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~--~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 10 SLAYGDR-PLLENVSLTLNPG-----ERIGLVGRNGAGKSTLLKILAGELEPDSGEVT--RPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred EEeeCCc-eeecCCcceeCCC-----CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe--ecCCceEEEeCCCCCcCCCc
Confidence 6777653 4688999998888 79999999999999999999999999999973 23346899999998766666
Q ss_pred cHHHHHHhhhcc----------------------------------CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHH
Q 040300 429 TVRHLLHQKIRD----------------------------------SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474 (605)
Q Consensus 429 tv~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~Q 474 (605)
||.+.+...... .+.....+..++..+|+... ++++.+||||||.
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHH
Confidence 887654321100 01112456678888999877 9999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 475 RvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+||+||..+||+|||||||||||.++...+.+.|+++ .| |+|+||||.+|+..+|++|+-++.+.
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEecCCc
Confidence 999999999999999999999999999999888888875 35 99999999999999999999998653
No 465
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=283.71 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=142.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++| +.|++..
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~------ 67 (250)
T PRK14247 3 KIEIRDL--------KVSFGQV-EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL------ 67 (250)
T ss_pred eEEEEee--------EEEECCe-eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE------
Confidence 4666665 4466542 3455665 4579999999999999999999999999985 6898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh------hhc-CchHHHHHHHHHHhhcCCc----hhh
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG------QVL-DQKDERDMKADLCTDLDLN----QVI 210 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~------~~l-~~~~~~~~~~~~l~~l~L~----~~~ 210 (605)
.|..+......... ...++.+|.....+. .+..++. ... ......+++.++++.++|. +.+
T Consensus 68 -----~g~~i~~~~~~~~~--~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14247 68 -----DGQDIFKMDVIELR--RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL 140 (250)
T ss_pred -----CCEECCcCCHHHHh--ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh
Confidence 22221110000000 011222222111111 1111111 000 1122345678899999985 467
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++.+.+|||||+||++||+||+.+|++|||||||++||+.++.++.++|+++.+ +.|||++|||++++..+||++++|.
T Consensus 141 ~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 141 DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999865 8999999999999999999999996
Q ss_pred C
Q 040300 291 G 291 (605)
Q Consensus 291 g 291 (605)
.
T Consensus 220 ~ 220 (250)
T PRK14247 220 K 220 (250)
T ss_pred C
Confidence 4
No 466
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-33 Score=257.05 Aligned_cols=192 Identities=28% Similarity=0.331 Sum_probs=160.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cC--------cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IP--------EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~--------~~ 413 (605)
.+.|+. +.++-+++|+..+| |.+.++||+|+|||||+|.|.=+.-|.+|+.. +.. .+ +.
T Consensus 9 n~~yg~-~q~lfdi~l~~~~g-----etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 9 NCFYGA-HQALFDITLDCPEG-----ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cccccc-chheeeeeecCCCC-----CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHH
Confidence 556664 34677888888888 78999999999999999999999999999753 110 11 13
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhh---hccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQK---IRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~---~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
++|+++|.......+||.+++... +.... .....+.++++++.+.++.|+.|-.|||||+|||||||||+++|++
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE
Confidence 589999987776778999887431 11111 1234677899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
||+||||++|||+-..++.++|+++. +.|.|-++|||+.+.+...|.||+.|+.+..+
T Consensus 163 llfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 99999999999999999999999985 56999999999999999999999999976544
No 467
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.3e-33 Score=275.01 Aligned_cols=172 Identities=29% Similarity=0.387 Sum_probs=122.9
Q ss_pred eecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc
Q 040300 94 LHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY 172 (605)
Q Consensus 94 l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~ 172 (605)
+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++.........-....++.+|.
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~~~~~i~~~~q~ 76 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI-----------DGEPLDYSRKGLLERRQRVGLVFQD 76 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE-----------CCEEccccccchHHHHhhEEEEecC
Confidence 44444 34799999999999999999999999999999998842 1211100000000000011122222
Q ss_pred cccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 040300 173 VDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243 (605)
Q Consensus 173 ~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP 243 (605)
... ..+..++.+. .......+++.++++.++|.+..++.+.+|||||+||++||+||+.+|+++|||||
T Consensus 77 ~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 77 PDD--QLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred hhh--ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 100 0000111111 11122345678899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhH
Q 040300 244 SSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV 278 (605)
Q Consensus 244 ts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~ 278 (605)
|++||+..+..+.++|+++.++|.|||+||||+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999998778999999999875
No 468
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.2e-33 Score=272.22 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=134.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+ .+|++|++. +.... ...++
T Consensus 7 ~~~~~~-~~~l~~is~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 7 HVSVGG-KEILKGVNLTIKKG-----EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred EEEeCC-EEeeeccceEECCC-----cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 667765 34688999988888 78999999999999999999999 479999875 22211 12489
Q ss_pred eecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
|+||+.......++.+++ ++...+|||||+|||+|||||+.+|++|||||||+
T Consensus 81 ~v~q~~~~~~~~~~~~~l---------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 133 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL---------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS 133 (200)
T ss_pred EeecChhhccCccHHHHH---------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999985443334444433 12346899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcCEEEEEeCCcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY-LADRVIVYEGQPS 546 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~-~adrviv~~g~~~ 546 (605)
+||+.++..+.++|+++.+ .+.|+|++|||++++.. +|||+++++++..
T Consensus 134 ~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 134 GLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRI 183 (200)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999854 48999999999999988 7999999986543
No 469
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.5e-33 Score=275.75 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=145.3
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
++++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.........++ +........|+.+++...
T Consensus 2 vl~~vs~~i~~G-----e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~---~~~~l~~~ltv~enl~~~ 73 (213)
T PRK15177 2 VLDKTDFVMGYH-----EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLG---ANSFILPGLTGEENARMM 73 (213)
T ss_pred eeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccc---cccccCCcCcHHHHHHHH
Confidence 478899998888 689999999999999999999999999998741111111122 222233456999987542
Q ss_pred hc-cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 438 IR-DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 438 ~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
.. ...........+.+.+++....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~- 152 (213)
T PRK15177 74 ASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ- 152 (213)
T ss_pred HHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-
Confidence 21 1122222334455667888888999999999999999999999999999999999999999999999998876543
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.|+|++|||+.++..+||++++|+++.. ...++.+++.+
T Consensus 153 -~~~ii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 192 (213)
T PRK15177 153 -QKGLIVLTHNPRLIKEHCHAFGVLLHGKI--TMCEDLAQATA 192 (213)
T ss_pred -CCcEEEEECCHHHHHHhcCeeEEEECCeE--EEeCCHHHHHH
Confidence 46899999999999999999999986543 34566555543
No 470
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=283.20 Aligned_cols=199 Identities=24% Similarity=0.290 Sum_probs=140.1
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhhhhhhhccchhhh
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQEILTYFRGSELQN 154 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~g~~l~~ 154 (605)
++++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+.+ |+.|++.. .|..+..
T Consensus 9 ~~l~~~~~~~-~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-----------~g~~i~~ 76 (251)
T PRK14244 9 KNLNLWYGSK-QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI-----------DGIDVYS 76 (251)
T ss_pred eeEEEEECCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEE-----------CCEehHh
Confidence 3566677642 3456666 468999999999999999999999999986 46898752 2221111
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhchhhhh--c-----CchHHHHHHHHHHhhcCCch----hhcccCCCCChHHHH
Q 040300 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV--L-----DQKDERDMKADLCTDLDLNQ----VIDRNVGDLSGGELQ 223 (605)
Q Consensus 155 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~--l-----~~~~~~~~~~~~l~~l~L~~----~~dr~v~~LSGGe~Q 223 (605)
.......-.-..++.+|.....+..+..++... . .....+..+.++++.++|.+ .+++.+.+|||||+|
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHH
Confidence 000000000011222232111111111111100 0 01123345778899999964 568899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++||+||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||+||||++++..+||++++|+.+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 99999999999999999999999999999999999999865 899999999999999999999999753
No 471
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.6e-33 Score=281.18 Aligned_cols=192 Identities=26% Similarity=0.364 Sum_probs=133.3
Q ss_pred CceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 82 DTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 82 ~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
+++++|+. +...+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... |..+.......
T Consensus 5 ~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~~ 73 (237)
T cd03252 5 HVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVD-----------GHDLALADPAW 73 (237)
T ss_pred EEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC-----------CeehHhcCHHH
Confidence 45567753 223456665 457999999999999999999999999999999988521 21111100000
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhcC-------chH-----HHHHHHHHHhhc--CCchhhcccCCCCChHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-------QKD-----ERDMKADLCTDL--DLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-------~~~-----~~~~~~~~l~~l--~L~~~~dr~v~~LSGGe~QRv 225 (605)
... ...+.+|... .+..++.+.+. ... ....+.++++.+ ++...+++++.+|||||+|||
T Consensus 74 ~~~--~i~~~~q~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv 147 (237)
T cd03252 74 LRR--QVGVVLQENV----LFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI 147 (237)
T ss_pred Hhh--cEEEEcCCch----hccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH
Confidence 000 0111122111 11111111110 000 011223455555 666677889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||+||+.+|++|||||||++||+..+..+.+.|+++.+ |.|||++|||++++. .||++++|+.+
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~-~~d~v~~l~~G 212 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVK-NADRIIVMEKG 212 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 999999999999999999999999999999999999975 899999999999996 59999999753
No 472
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-33 Score=286.18 Aligned_cols=196 Identities=28% Similarity=0.302 Sum_probs=140.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC--------CceeeCCCChhhhhhhhccchhh
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN--------LGRFNNPPDWQEILTYFRGSELQ 153 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~--------~G~i~~~~~~~~~~~~~~g~~l~ 153 (605)
++++|+.. ..|.+++ .+.+|++++|+|+||||||||+|+|+|+++|+ .|++.. .|..+.
T Consensus 7 l~~~~~~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~-----------~g~~~~ 74 (272)
T PRK13547 7 LHVARRHR-AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL-----------NGEPLA 74 (272)
T ss_pred EEEEECCE-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE-----------CCEEcc
Confidence 34566543 3455665 35899999999999999999999999999998 788742 222211
Q ss_pred hhHHHHHHHHHHHhhcccccccch-hhhhchhhhh-c--------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHH
Q 040300 154 NYFTRILEDNLKAIIKPQYVDHIP-KAVQGNVGQV-L--------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQ 223 (605)
Q Consensus 154 ~~~~~~~~~~~~~~~~~q~~~~~~-~~~~~~v~~~-l--------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~Q 223 (605)
......... ...+.+|.....+ ..+..++... . ......+++.++++.++|.+.+++++.+|||||+|
T Consensus 75 ~~~~~~~~~--~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLAR--LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHh--hcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 110000000 0111222111000 0011111000 0 01123456788999999999999999999999999
Q ss_pred HHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 224 RFAIAVVAV---------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 224 RvaIA~aL~---------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+||+||+ .+|++|||||||++||+..+..+.++|+++.++ +.|||+||||++++..+||++++|..+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999 599999999999999999999999999999875 899999999999999999999999643
No 473
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=273.97 Aligned_cols=200 Identities=23% Similarity=0.377 Sum_probs=154.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
|++|.+++| +||.. -.+++++ .+.+|++.|++|+|||||||++++|.|++.|+.|+|..
T Consensus 2 ~L~ie~vtK--------~Fg~k-~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~----------- 61 (300)
T COG4152 2 ALEIEGVTK--------SFGDK-KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW----------- 61 (300)
T ss_pred ceEEecchh--------ccCce-eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEE-----------
Confidence 567776655 56654 2355555 35799999999999999999999999999999999963
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhh---------hcCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.++..-. .-+..+.|..-..-|+. +|.+ -.+..+.+.++..||+++++.....+++.+||
T Consensus 62 ~g~~~~~~~------~~rIGyLPEERGLy~k~---tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LS 132 (300)
T COG4152 62 NGGPLSQEI------KNRIGYLPEERGLYPKM---TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELS 132 (300)
T ss_pred cCcchhhhh------hhhcccChhhhccCccC---cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhh
Confidence 222211100 00111222211111211 1111 12455678889999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe-Ccccccc
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY-GKPGAYG 297 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~-g~~~~~g 297 (605)
-|.+|++.+..|++++|+++|||||+|||||...+.+.+.|.+++++|.|||++||.++.++.+||++++|. |++..||
T Consensus 133 KGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred hhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4444455
No 474
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-33 Score=285.50 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=137.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhhhhhhhccchhhh-
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQEILTYFRGSELQN- 154 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~~~~~~~g~~l~~- 154 (605)
+++++|+.. ..|.+++ .+.+||++||+|+||||||||+++|+|+++| +.|++.. .|.++..
T Consensus 9 ~v~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~-----------~g~~~~~~ 76 (258)
T PRK14241 9 DLNIYYGSF-HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL-----------DGEDLYGP 76 (258)
T ss_pred eEEEEECCE-eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE-----------CCEecccc
Confidence 345566543 2455555 3579999999999999999999999999974 6898752 1211110
Q ss_pred -hHHHHHHHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHH
Q 040300 155 -YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGEL 222 (605)
Q Consensus 155 -~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~ 222 (605)
....... ...++.+|.....+. .+..++.. . ......++++.++++.+++. +.+++.+.+|||||+
T Consensus 77 ~~~~~~~~--~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 77 GVDPVAVR--RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred ccChHHHh--cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 0000000 011122222111111 11111110 0 01122345678889999883 578899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999965 6899999999999999999999995
No 475
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-33 Score=287.22 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=142.6
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC---ceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL---GRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~ 143 (605)
+|+|.||.+ +|+.. ...+++++ .+.+||++||+|+||||||||+++|+|+++|+. |++..
T Consensus 5 ~l~i~~l~~--------~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i------- 69 (282)
T PRK13640 5 IVEFKHVSF--------TYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITV------- 69 (282)
T ss_pred eEEEEEEEE--------EcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEE-------
Confidence 577777655 45321 12344444 347999999999999999999999999999987 77742
Q ss_pred hhhhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhccc
Q 040300 144 LTYFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 144 ~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
.|.++......... ....+.+|... .++ ..++.+. .......+++.++++.+||.+.+++.
T Consensus 70 ----~g~~~~~~~~~~~~--~~ig~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 140 (282)
T PRK13640 70 ----DGITLTAKTVWDIR--EKVGIVFQNPDNQFV---GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE 140 (282)
T ss_pred ----CCEECCcCCHHHHH--hheEEEEECHHHhhc---cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC
Confidence 22211110000000 01111122110 000 0111111 11123345688899999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+|||+++++. .||++++|+.+
T Consensus 141 ~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G 219 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDG 219 (282)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999765 899999999999995 79999999643
No 476
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-32 Score=337.79 Aligned_cols=215 Identities=20% Similarity=0.267 Sum_probs=173.6
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~ 419 (605)
.+.|++ ...++++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. +..++|+|
T Consensus 935 sK~y~~~~k~aL~~lsl~I~~G-----ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257 935 VKIFEPSGRPAVDRLNITFYEN-----QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred EEEecCCCceEEEeeEEEEcCC-----cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEe
Confidence 566742 234788999998888 78999999999999999999999999999875 22221 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
|+.......||++++....+. ... ....+.++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||
T Consensus 1010 Q~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPT 1089 (2272)
T TIGR01257 1010 QHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089 (2272)
T ss_pred cCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 997665678999987542111 111 1245678999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccceecceEEEec
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRD 575 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 575 (605)
+|||+.+++.++++|+++ + .|+|||++|||++++..+||||++|+++.. ...|++..+... |-.+..+++...
T Consensus 1090 SGLDp~sr~~l~~lL~~l-~-~g~TIIltTHdmdea~~laDrI~iL~~GkL--~~~Gs~~~Lk~~---~g~gy~l~~~~~ 1162 (2272)
T TIGR01257 1090 SGVDPYSRRSIWDLLLKY-R-SGRTIIMSTHHMDEADLLGDRIAIISQGRL--YCSGTPLFLKNC---FGTGFYLTLVRK 1162 (2272)
T ss_pred cCCCHHHHHHHHHHHHHH-h-CCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEecCHHHHHHh---cCCcEEEEEEec
Confidence 999999999999999998 4 489999999999999999999999986543 456888887653 333444455433
No 477
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-33 Score=279.83 Aligned_cols=191 Identities=23% Similarity=0.356 Sum_probs=130.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.....+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+......
T Consensus 8 l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~ 76 (229)
T cd03254 8 VNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI-----------DGIDIRDISRKSLR 76 (229)
T ss_pred EEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE-----------CCEeHHHcCHHHHh
Confidence 4456653223455555 45799999999999999999999999999999999852 12111110000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcC---chHHHHH---------HHHHHhhc--CCchhhcccCCCCChHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDM---------KADLCTDL--DLNQVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~---------~~~~l~~l--~L~~~~dr~v~~LSGGe~QRvaI 227 (605)
...++.+|. +..+..++.+.+. ....... +.++++.+ +++..+++.+.+|||||+|||+|
T Consensus 77 --~~i~~~~q~----~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~l 150 (229)
T cd03254 77 --SMIGVVLQD----TFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150 (229)
T ss_pred --hhEEEecCC----chhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHH
Confidence 001111121 1111111211110 0000111 23344444 55556677889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||+|||+++++.. ||++++|..+
T Consensus 151 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g 213 (229)
T cd03254 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKN-ADKILVLDDG 213 (229)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh-CCEEEEEeCC
Confidence 9999999999999999999999999999999999864 8999999999999974 9999999653
No 478
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=283.49 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=142.3
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQ 141 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~ 141 (605)
..|++.|+ +++|+.. ..+++++ .+++||+++|+|+||||||||+++|+|+++ |+.|++..
T Consensus 12 ~~l~~~~l--------~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~----- 77 (260)
T PRK10744 12 SKIQVRNL--------NFYYGKF-HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL----- 77 (260)
T ss_pred ceEEEEEE--------EEEeCCe-EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE-----
Confidence 45666665 4456543 2455555 357999999999999999999999999986 47898742
Q ss_pred hhhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhh---hh---cCchHHHHHHHHHHhhcCCc----hh
Q 040300 142 EILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QV---LDQKDERDMKADLCTDLDLN----QV 209 (605)
Q Consensus 142 ~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~---l~~~~~~~~~~~~l~~l~L~----~~ 209 (605)
.|..+.. ....... -...+.+|.....+..+..++. .. +......+++.++++.+++. +.
T Consensus 78 ------~g~~~~~~~~~~~~~~--~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 149 (260)
T PRK10744 78 ------DGENILTPKQDIALLR--AKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK 149 (260)
T ss_pred ------CCEEccccccchHHHh--cceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Confidence 1211100 0000000 0111222221111111111111 00 11122345678899999973 56
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+++.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+||++++|
T Consensus 150 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 150 LHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 8899999999999999999999999999999999999999999999999999965 789999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+.+
T Consensus 229 ~~G 231 (260)
T PRK10744 229 YLG 231 (260)
T ss_pred ECC
Confidence 753
No 479
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=286.39 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=140.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
+|++.||. ++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++ |+.|++..
T Consensus 21 ~l~~~~l~--------~~~~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~------ 85 (268)
T PRK14248 21 ILEVKDLS--------IYYGEK-RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILY------ 85 (268)
T ss_pred eEEEEEEE--------EEeCCc-eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEE------
Confidence 56666654 456532 2455555 357999999999999999999999999864 68998742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhh---hc---CchHHHHHHHHHHhhcCCc----hhhcc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---VL---DQKDERDMKADLCTDLDLN----QVIDR 212 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---~l---~~~~~~~~~~~~l~~l~L~----~~~dr 212 (605)
.|.++..............++.+|.....+..+..++.. .. ........+.++++.+++. +.+++
T Consensus 86 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 160 (268)
T PRK14248 86 -----EGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS 160 (268)
T ss_pred -----CCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc
Confidence 121111000000000001122222211111111111110 00 0112234567788888874 56789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+||++++|+.+
T Consensus 161 ~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G 239 (268)
T PRK14248 161 SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNG 239 (268)
T ss_pred CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999965 689999999999999999999999743
No 480
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-33 Score=286.77 Aligned_cols=200 Identities=29% Similarity=0.390 Sum_probs=143.6
Q ss_pred ceEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
.+|++.|+.+ +|+. ....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 6 ~~l~~~nl~~--------~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--------- 68 (271)
T PRK13632 6 VMIKVENVSF--------SYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI--------- 68 (271)
T ss_pred eEEEEEeEEE--------EcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---------
Confidence 3677777654 5532 122455555 35799999999999999999999999999999998742
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|..+......... ....+.+|... ..+ ..++.+. +.....+.++.++++.++|.+.+++.+.
T Consensus 69 --~g~~i~~~~~~~~~--~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (271)
T PRK13632 69 --DGITISKENLKEIR--KKIGIIFQNPDNQFI---GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQ 141 (271)
T ss_pred --CCEecCcCCHHHHh--cceEEEEeCHHHhcC---cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcc
Confidence 12111100000000 00111111110 000 0111111 1112234567889999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||++|||++++. .||++++|..+
T Consensus 142 ~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G 218 (271)
T PRK13632 142 NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEG 218 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999766 589999999999986 79999999653
No 481
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=9.1e-32 Score=324.83 Aligned_cols=328 Identities=17% Similarity=0.217 Sum_probs=218.3
Q ss_pred HHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCH
Q 040300 200 LCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276 (605)
Q Consensus 200 ~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl 276 (605)
.|..+||..+ ++|...+|||||.||+-||+.|-.+= =+|+|||||.||.++....+.+.|++|...|.|||||+||.
T Consensus 1370 ~l~~vGL~YLtL~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~ 1449 (1809)
T PRK00635 1370 FIDKVGLSYITLGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSG 1449 (1809)
T ss_pred HHHhCCCCcccccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3455788874 89999999999999999999998764 49999999999999999999999999999999999999999
Q ss_pred hHHHhhcCEEEEEeCcccccccc-ccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCc
Q 040300 277 SVLDYLSDFICCLYGKPGAYGVV-TLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTM 355 (605)
Q Consensus 277 ~~l~~~~D~i~vl~g~~~~~g~~-~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 355 (605)
+.+. .||+|+-|--+.|.+|-. ....+..+..+. .. . . ++ ....+ .. .+ ...
T Consensus 1450 ~~i~-~AD~iidiGPgAG~~GG~iv~~G~~~~l~~~-----~~-~--~-------~~--~~~~~------~l-~l--~a~ 1502 (1809)
T PRK00635 1450 SLAE-HADHLIHLGPGSGPQGGYLLSTSALKQSQPD-----LH-N--T-------RS--SEETP------TL-SV--SLS 1502 (1809)
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEEecCCHHHHhhh-----cc-c--c-------cc--cccCc------EE-EE--ecc
Confidence 8887 599999994334444421 112222221110 00 0 0 00 00000 00 11 111
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH----------cCCCCCeeeeecc-cc--------------
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA----------GLLKPDSVEDSDV-EI-------------- 410 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~----------Gl~~p~~G~i~~~-~~-------------- 410 (605)
...++++++++.-|. .++|.|.+|||||||++-.. |...-+.-...++ .+
T Consensus 1503 ~nNLk~v~v~iPlg~-----l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~ 1577 (1809)
T PRK00635 1503 IHTIQNLNVSAPLHS-----LVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDI 1577 (1809)
T ss_pred cccCCcceeeccCCc-----EEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhh
Confidence 224678888888884 79999999999999997443 2211111000000 00
Q ss_pred -----------C-cceeEeecCcCCCC------------------------------------C----------cCcHHH
Q 040300 411 -----------P-EFNVSYKPQKISPK------------------------------------F----------QSTVRH 432 (605)
Q Consensus 411 -----------~-~~~i~y~~q~~~~~------------------------------------~----------~~tv~~ 432 (605)
+ ...-+|.+-..++. | ..++.|
T Consensus 1578 fd~IR~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~d 1657 (1809)
T PRK00635 1578 APSLRNFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQ 1657 (1809)
T ss_pred HHHHHHHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHH
Confidence 0 00001111100000 0 001111
Q ss_pred HHHhhhcc---CCCC-H--HHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHH
Q 040300 433 LLHQKIRD---SYTH-P--QFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLGKP---ADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 433 ~~~~~~~~---~~~~-~--~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~~---p~lllLDEPt~~LD~~~ 502 (605)
.+.+.+.. .|.. + ...-+.|..+||..+ +.++..+|||||.||+-||..|..+ +.+|||||||.||++..
T Consensus 1658 vL~mtv~ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d 1737 (1809)
T PRK00635 1658 LLQTPIEEVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ 1737 (1809)
T ss_pred HhcCCHHHHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH
Confidence 11111000 0111 1 122346777788754 6789999999999999999999875 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe--CCc--ceeeecCChhhhhccc
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--GQP--SVDCVANAPQSLLTGM 561 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--g~~--~~~~~~~~p~~~~~~~ 561 (605)
...++++|++|.. .|.|||+|+||++.+.. ||.|+-|- |+. +...+.|+|+++....
T Consensus 1738 ~~~Ll~~l~~L~~-~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1738 KSALLVQLRTLVS-LGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 9999999999864 69999999999999987 99999984 221 3456889999998753
No 482
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-33 Score=285.87 Aligned_cols=202 Identities=26% Similarity=0.311 Sum_probs=144.0
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|+.+ +|+.. ...+++++ .+++||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 7 ~l~i~~l~~--------~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~---------- 68 (269)
T PRK13648 7 IIVFKNVSF--------QYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY---------- 68 (269)
T ss_pred eEEEEEEEE--------EcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE----------
Confidence 577776554 55432 12455555 35799999999999999999999999999999998852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccc-cchhh-hhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKA-VQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~-~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.|..+.......... ..++.+|... .++.. +...+. .. .......+++.++++.+++.+..++.+.+|||
T Consensus 69 -~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 145 (269)
T PRK13648 69 -NNQAITDDNFEKLRK--HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSG 145 (269)
T ss_pred -CCEECCcCCHHHHHh--heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCH
Confidence 222211110000000 1111222110 01100 000000 00 11122345678899999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+||++||+||+.+|++|||||||++||+.++..+.+.|+++.++ |.|||+|||+++++.. ||+|++|+.+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 9999999999999999999999999999999999999999999764 8999999999999986 9999999653
No 483
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.7e-33 Score=283.76 Aligned_cols=190 Identities=22% Similarity=0.371 Sum_probs=137.9
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH-HHHHHHHhhc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI-LEDNLKAIIK 169 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~-~~~~~~~~~~ 169 (605)
..+++++ .+.+||+++|+|+||||||||+++|+|+++|++|++.. .|..+....... ....-..++.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~-----------~g~~~~~~~~~~~~~~~~~i~~v 94 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSW-----------RGEPLAKLNRAQRKAFRRDIQMV 94 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEeccccChhHHHHHHhcEEEE
Confidence 3456666 45899999999999999999999999999999999852 122111100000 0000011122
Q ss_pred ccccc-cc-hh-hhhchhh----hh--cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 170 PQYVD-HI-PK-AVQGNVG----QV--LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 170 ~q~~~-~~-~~-~~~~~v~----~~--l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+|... .+ +. .+...+. .. +.......++.++++.+|+. ..+++.+.+|||||+||++||+||+.+|++||
T Consensus 95 ~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 95 FQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred EcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 22110 00 00 0000110 00 11222345688999999997 68999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+++
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 228 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999765 899999999999999999999999753
No 484
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=314.53 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=152.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
+++|++. ..+++++|++.+| |++||+||||||||||+|+|+|+++|++|+|.. .....++|++|.... +..
T Consensus 8 s~~~g~~-~~l~~vs~~i~~G-----e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~--~~~~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 8 QIRRGVR-VLLDNATATINPG-----QKVGLVGKNGCGKSTLLALLKNEISADGGSYTF--PGNWQLAWVNQETPA-LPQ 78 (638)
T ss_pred EEEeCCc-eeecCcEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe--cCCCEEEEEecCCCC-CCC
Confidence 7778753 4689999999888 789999999999999999999999999999741 123358999986322 223
Q ss_pred cHHHHHHhh-------------------------hc------cCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHH
Q 040300 429 TVRHLLHQK-------------------------IR------DSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRV 476 (605)
Q Consensus 429 tv~~~~~~~-------------------------~~------~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRv 476 (605)
++.+++... .. ..+.....+.++++.+|+. ...++++.+|||||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 433322100 00 0011124567889999997 578999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 477 ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 477 aiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
+||+||+.+|+||||||||||||+.++..+.+.|+++ +.|||+||||++++..+|||+++++++... ...|+...
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~G~i~-~~~g~~~~ 233 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQQSLF-EYTGNYSS 233 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE-EecCCHHH
Confidence 9999999999999999999999999999998888875 579999999999999999999999865432 23454443
No 485
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-33 Score=280.90 Aligned_cols=193 Identities=27% Similarity=0.408 Sum_probs=141.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. .+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+......
T Consensus 5 ~l~~~~~~~--~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i-----------~g~~~~~~~~~-- 69 (235)
T cd03299 5 NLSKDWKEF--KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILL-----------NGKDITNLPPE-- 69 (235)
T ss_pred eEEEEeCCc--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------CCEEcCcCChh--
Confidence 345566542 355555 35799999999999999999999999999999998742 12111110000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
....++.+|.....+. .+..++.. . .......+.+.++++.++|.+.+++.+.+|||||+||++||+||+.+
T Consensus 70 --~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 70 --KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred --HcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 0011112221111110 00011100 0 01122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++++|||||++||+.++..+.++|+++.++ +.|||++||+++++..+||++++|..
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~ 205 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN 205 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999998764 89999999999999999999999964
No 486
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.5e-33 Score=276.40 Aligned_cols=198 Identities=25% Similarity=0.348 Sum_probs=139.6
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++++|+.. ...+++++ .+.+|++++|+|+||||||||+++|+|.++|+.|++.. .|..+.....
T Consensus 6 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~ 74 (220)
T TIGR02982 6 NLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV-----------LGQELYGASE 74 (220)
T ss_pred EEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CCEEhHhcCH
Confidence 345555431 22455555 35799999999999999999999999999999998852 1221111000
Q ss_pred HHH-HHHHHHhhcccccccchh-hhhchhh---h---hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 158 RIL-EDNLKAIIKPQYVDHIPK-AVQGNVG---Q---VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 158 ~~~-~~~~~~~~~~q~~~~~~~-~~~~~v~---~---~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
... ...-...+.+|.....+. .+..++. . .+...+...++.++++.+||.+..++.+.+|||||+||++||+
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 000 000011112222111110 0000000 0 0112233457889999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|+++||||||++||+.++..+.++|+++.+ .+.|||++|||++.. .+||+|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~ 216 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMED 216 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEEC
Confidence 99999999999999999999999999999999986 489999999999865 68999999974
No 487
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-33 Score=283.67 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=140.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
+|++.|+. ++|+.. ..|++++ .+.+||+++|+|+||||||||+++|+|+++ |+.|++..
T Consensus 13 ~l~i~nl~--------~~~~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~------ 77 (269)
T PRK14259 13 IISLQNVT--------ISYGTF-EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF------ 77 (269)
T ss_pred eEEEEeEE--------EEECCE-EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE------
Confidence 57777654 456542 2455555 358999999999999999999999999987 58898752
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhhhhcC--------chHHHHHHHHHHhhcCC----ch
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--------QKDERDMKADLCTDLDL----NQ 208 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~--------~~~~~~~~~~~l~~l~L----~~ 208 (605)
.|.++.. ....... ...++.+|.....+. ++.+.+. .....+++.++++.+++ .+
T Consensus 78 -----~g~~i~~~~~~~~~~~--~~i~~v~q~~~l~~~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~ 146 (269)
T PRK14259 78 -----DGTDLYDPRVDPVEVR--RRIGMVFQQPNPFPK----SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD 146 (269)
T ss_pred -----CCEEcccccCCHHHHh--hceEEEccCCccchh----hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh
Confidence 2221110 0000000 011222222111111 2221110 01223456777888876 45
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||+||++||+||+.+|++|||||||++||+..+..+.++|+++.+ +.|||+||||++++..+||++++
T Consensus 147 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 68999999999999999999999999999999999999999999999999999965 79999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 226 l~~ 228 (269)
T PRK14259 226 FNA 228 (269)
T ss_pred Eec
Confidence 974
No 488
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-32 Score=297.49 Aligned_cols=206 Identities=22% Similarity=0.263 Sum_probs=170.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--------CcceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--------PEFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--------~~~~i~y~ 418 (605)
+.+|+.. +++++++|++.+| |+++|+|.||||||||+|+|+|.++|++|++. +... ....|+.+
T Consensus 15 ~K~FggV-~AL~~v~l~v~~G-----EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 15 SKSFGGV-KALDGVSLTVRPG-----EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eEEcCCc-eeeccceeEEeCc-----eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 7888864 5899999999998 78999999999999999999999999999985 2211 12459999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc----cCCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR----DSYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~----~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
.|+.+...++||.+|++.... ..+.+ ...+.++|+.+++....+.++.+||+||||.|+|||||..+++|+|
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998889999998854211 11122 2457789999998645899999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCccee----eecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVD----CVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~----~~~~~p~~~~~~~ 561 (605)
||||||+|+......++++|++|. ++|.++|+|||.++++..+||||.||.++..+. ...-+.+++..-|
T Consensus 169 lDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 169 LDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLM 242 (500)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHh
Confidence 999999999999999999999985 569999999999999999999999998654321 1233455555544
No 489
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-33 Score=280.82 Aligned_cols=203 Identities=22% Similarity=0.294 Sum_probs=139.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcC---CCC--CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGK---LKP--NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~---l~p--~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+ ++| +.|++..
T Consensus 3 ~l~~~~~--------~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~------ 67 (250)
T PRK14245 3 KIDARDV--------NFWYGDF-HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRI------ 67 (250)
T ss_pred EEEEEEE--------EEEECCE-eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEE------
Confidence 5666665 4456542 2455555 3579999999999999999999999997 455 4898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc------CchHHHHHHHHHHhhcCCc----hhhcc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL------DQKDERDMKADLCTDLDLN----QVIDR 212 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l------~~~~~~~~~~~~l~~l~L~----~~~dr 212 (605)
.|..+...............+.+|.....+..+..++...+ .......++.++++.+++. +.+++
T Consensus 68 -----~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14245 68 -----DGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKE 142 (250)
T ss_pred -----CCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhC
Confidence 22211110000000000112222221111111111111000 0112345678899999985 45789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.+
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFYMG 221 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999954 799999999999999999999999743
No 490
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-33 Score=286.00 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=143.7
Q ss_pred eEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|+. ++|+.. ...+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~--------~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~--------- 66 (277)
T PRK13642 4 ILEVENLV--------FKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKI--------- 66 (277)
T ss_pred eEEEEEEE--------EEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE---------
Confidence 56776654 455421 12455555 45799999999999999999999999999999999842
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|..+........ .....+.+|... .++ ..++.+. .......+++.++++.+||.++.++++.
T Consensus 67 --~g~~i~~~~~~~~--~~~i~~v~q~~~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (277)
T PRK13642 67 --DGELLTAENVWNL--RRKIGMVFQNPDNQFV---GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA 139 (277)
T ss_pred --CCEECCcCCHHHH--hcceEEEEECHHHhhc---cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 1211110000000 001111122110 000 0111111 1112234567889999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++. .||+|++|+.+
T Consensus 140 ~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 140 RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999875 899999999999997 59999999743
No 491
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-33 Score=281.50 Aligned_cols=197 Identities=22% Similarity=0.292 Sum_probs=137.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhhhhhhhccchhhhhH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQEILTYFRGSELQNYF 156 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~~~~~~~g~~l~~~~ 156 (605)
++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++| +.|++.. .|..+....
T Consensus 10 l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~-----------~g~~i~~~~ 77 (251)
T PRK14270 10 LNLWYGEK-QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL-----------DGKNIYDKD 77 (251)
T ss_pred eEEEECCe-eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE-----------CCEeccccc
Confidence 44566532 2455555 3579999999999999999999999999875 7898742 222111000
Q ss_pred HHHHHHHHHHhhcccccccchhhhhchhh---hhc---CchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHHHHHH
Q 040300 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVG---QVL---DQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 157 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~l---~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~QRva 226 (605)
.......-..++.+|.....+..+..++. ... .......++.++++.+++. +.+++.+.+|||||+||++
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 00000000112222222111111111111 000 1112245677889999873 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+++
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999999876 689999999999999999999999753
No 492
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.8e-32 Score=297.70 Aligned_cols=334 Identities=25% Similarity=0.318 Sum_probs=217.9
Q ss_pred HhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHh
Q 040300 201 CTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS 277 (605)
Q Consensus 201 l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~ 277 (605)
|-.+||..+ ++|...+|||||.||+.||..+-..= =+|+||||+.||-++.-.++.+.|+.|+..|.||||||||.+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 334688764 89999999999999999999998764 489999999999999999999999999999999999999988
Q ss_pred HHHhhcCEEEEEeCcccccccc-ccchhhHH-------HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhhee
Q 040300 278 VLDYLSDFICCLYGKPGAYGVV-TLPFSVRE-------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYAR 349 (605)
Q Consensus 278 ~l~~~~D~i~vl~g~~~~~g~~-~~~~~~r~-------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 349 (605)
.+. .||+|+-+--+.|.+|-. ....++.+ ...+|+.|....+ ++..... . ..... .
T Consensus 545 ti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLsg~~~i~------------vP~~rr~-~-~~~~L-~ 608 (935)
T COG0178 545 TIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLSGKKTIE------------VPKKRRA-P-NGKWL-E 608 (935)
T ss_pred HHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhcCCcccC------------CcccccC-C-CCCeE-E
Confidence 776 699999995444555422 11122221 1123444321110 0000000 0 00000 1
Q ss_pred eecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHH-----HHHHcCCCC-----Ce-eeeecc-ccCcceeEe
Q 040300 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFI-----RMLAGLLKP-----DS-VEDSDV-EIPEFNVSY 417 (605)
Q Consensus 350 ~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLl-----k~L~Gl~~p-----~~-G~i~~~-~~~~~~i~y 417 (605)
+.-.. ...++|+++++.-|. +++|.|-+|||||||+ ++++..+.. .. -++.+. .+ -++-+
T Consensus 609 l~gA~-~nNLkni~v~iPLg~-----~t~VTGVSGSGKSTLIn~tL~~a~~~~l~~~~~~p~~~~~i~G~e~i--dkvI~ 680 (935)
T COG0178 609 LKGAR-RNNLKNIDVEIPLGV-----FTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHI--DKVID 680 (935)
T ss_pred Eeccc-ccCcccceeeccccc-----EEEEEecCCCCHHHhHHHHHHHHHHHHhccCCCCCCCcceeechhhc--CeEEE
Confidence 11111 124778888888884 6999999999999998 333333222 11 011100 00 01122
Q ss_pred ecCcCC-------CC-C---cCcHHHHHH---------------------------------------------------
Q 040300 418 KPQKIS-------PK-F---QSTVRHLLH--------------------------------------------------- 435 (605)
Q Consensus 418 ~~q~~~-------~~-~---~~tv~~~~~--------------------------------------------------- 435 (605)
+.|.+- +. + ...++++|.
T Consensus 681 IdQsPIGRTpRSNPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~ 760 (935)
T COG0178 681 IDQSPIGRTPRSNPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCH 760 (935)
T ss_pred ecCCCCCCCCCCCccchhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcC
Confidence 222210 00 0 012233321
Q ss_pred -----------------------hhhcc---CCCC-H--HHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccC
Q 040300 436 -----------------------QKIRD---SYTH-P--QFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 436 -----------------------~~~~~---~~~~-~--~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
+.+.. -|.+ + ...-+.|..+||.. -+-++..+|||||.|||-||.-|.+.
T Consensus 761 GkRYn~EtLev~ykGK~IadVL~MTveEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~ 840 (935)
T COG0178 761 GKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKR 840 (935)
T ss_pred CcccccceEEEEECCccHHHHHhccHHHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhc
Confidence 00000 0000 0 11223445566663 35789999999999999999999887
Q ss_pred C---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe--CC--cceeeecCChhhhh
Q 040300 486 A---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--GQ--PSVDCVANAPQSLL 558 (605)
Q Consensus 486 p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--g~--~~~~~~~~~p~~~~ 558 (605)
. .+|||||||.||-.+....++++|.+|.. .|-|||+|+|+++.+. .||.|+-+- |+ -+...+.|+|+++.
T Consensus 841 ~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva 918 (935)
T COG0178 841 STGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVA 918 (935)
T ss_pred cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence 7 89999999999999999999999999975 5999999999999986 599999983 22 13456889999997
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
..
T Consensus 919 ~~ 920 (935)
T COG0178 919 KV 920 (935)
T ss_pred hC
Confidence 63
No 493
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-32 Score=279.98 Aligned_cols=198 Identities=19% Similarity=0.237 Sum_probs=152.9
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.+.|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 26 ~~~~~~~~~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v 100 (257)
T cd03288 26 CVRYENNLKPVLKHVKAYIKPG-----QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSII 100 (257)
T ss_pred EEEeCCCCCcceeEEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEE
Confidence 6677642 23688999999888 78999999999999999999999999999875 22211 2358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHH---------Hhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDV---------MKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~---------l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+... +..|+++++... ... ......++ ++.+ +++...+..+.+|||||+||++|||||+++|+
T Consensus 101 ~q~~~l-~~~tv~~nl~~~--~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 101 LQDPIL-FSGSIRFNLDPE--CKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred CCCCcc-cccHHHHhcCcC--CCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998753 456888776321 111 11122233 3333 44555566778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..+.++|+++ . .+.|+|++||+++.+.. |||+++|+++.. ...++++++.+.
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~-~-~~~tiii~sh~~~~~~~-~dri~~l~~G~i--~~~g~~~~~~~~ 244 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTA-F-ADRTVVTIAHRVSTILD-ADLVLVLSRGIL--VECDTPENLLAQ 244 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh-c-CCCEEEEEecChHHHHh-CCEEEEEECCEE--EEeCCHHHHHhc
Confidence 99999999999999999999999986 3 38999999999999986 999999986543 345777777654
No 494
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.3e-33 Score=277.17 Aligned_cols=174 Identities=26% Similarity=0.377 Sum_probs=132.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccccccc---ch
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDH---IP 177 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~---~~ 177 (605)
++||++||+|+||||||||+++|+|+++|+.|++... |.++... ....++.+|.... .+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~-----------g~~~~~~-------~~~i~~v~q~~~~~~~~~ 65 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVA-----------GASPGKG-------WRHIGYVPQRHEFAWDFP 65 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC-----------CccchHh-------hCcEEEecccccccCCCC
Confidence 6899999999999999999999999999999998522 1111000 0001111111000 00
Q ss_pred hhhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 040300 178 KAVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248 (605)
Q Consensus 178 ~~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD 248 (605)
..+..++.. .+ .......++.++++.+++++..++.+.+|||||+||++||+||+.+|+++||||||++||
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 000011100 00 112234568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 249 VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 249 ~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.++..+.++|+++.+++.|||++|||++++..+||++++++|+
T Consensus 146 ~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~ 189 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGR 189 (223)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEECCE
Confidence 99999999999999877999999999999999999999999543
No 495
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-33 Score=281.53 Aligned_cols=196 Identities=23% Similarity=0.252 Sum_probs=139.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++ |+.|++..
T Consensus 4 ~l~~~~l--------~~~~~~~-~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i------ 68 (251)
T PRK14251 4 IISAKDV--------HLSYGNY-EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF------ 68 (251)
T ss_pred eEEEEee--------EEEECCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE------
Confidence 5666665 4566542 3455555 357999999999999999999999999997 47898742
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhhhhc----------CchHHHHHHHHHHhhcCCc---
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL----------DQKDERDMKADLCTDLDLN--- 207 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l----------~~~~~~~~~~~~l~~l~L~--- 207 (605)
.|..+.. ...... ....++.+|.....+ .++.+.+ ......+++.++++.+++.
T Consensus 69 -----~g~~~~~~~~~~~~~--~~~i~~~~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (251)
T PRK14251 69 -----EGQNIYGSKMDLVEL--RKEVGMVFQQPTPFP----FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET 137 (251)
T ss_pred -----CCEEcccccchHHHh--hccEEEEecCCccCC----CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch
Confidence 1111100 000000 000111122111111 1111111 0111234577888999984
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i 286 (605)
..+++.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||+||||++++..+||+|
T Consensus 138 ~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 138 KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEE
Confidence 567899999999999999999999999999999999999999999999999999865 799999999999999999999
Q ss_pred EEEeC
Q 040300 287 CCLYG 291 (605)
Q Consensus 287 ~vl~g 291 (605)
++|+.
T Consensus 217 ~~l~~ 221 (251)
T PRK14251 217 AFLMN 221 (251)
T ss_pred EEEEC
Confidence 99964
No 496
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-33 Score=264.89 Aligned_cols=198 Identities=29% Similarity=0.439 Sum_probs=156.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|+|.|+++ +||.. ..+++++ .+.+|.+++|+|||||||||||.+++.++++++|++. +
T Consensus 1 MI~i~nv~K--------~y~~~-~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~-----------i 60 (252)
T COG4604 1 MITIENVSK--------SYGTK-VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT-----------I 60 (252)
T ss_pred CeeehhhhH--------hhCCE-EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEE-----------E
Confidence 466666555 66654 4566666 3568999999999999999999999999999999984 4
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-----------CchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-----------DQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-----------~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++..+..+.+.+.+...- |.-.... .-+|++++ ...+++..+.++++.|+|+++.||+..+
T Consensus 61 ~g~~~~~~~s~~LAk~lSILk--Q~N~i~~---rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~ 135 (252)
T COG4604 61 DGLELTSTPSKELAKKLSILK--QENHINS---RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDE 135 (252)
T ss_pred eeeecccCChHHHHHHHHHHH--hhchhhh---eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHh
Confidence 555655555554444443321 1100000 11233321 1245677899999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||||||+-||++++++.|.++||||.|+||.+....+++.+++++++ |+||++|=||.+++..++|+|+-|..
T Consensus 136 LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~ 211 (252)
T COG4604 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKN 211 (252)
T ss_pred cccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecC
Confidence 9999999999999999999999999999999999999999999999986 99999999999999999999999954
No 497
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-32 Score=317.46 Aligned_cols=199 Identities=19% Similarity=0.296 Sum_probs=162.4
Q ss_pred hhheeeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
+++ +|+|++ ....+++++|++.+| |.++|+|+||||||||+|+|+|+++|++|++. +.++. +..
T Consensus 455 ~nv-sf~Y~~~~~~vL~~isl~i~~G-----e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 455 DRV-TFRYRPDGPLILDDVSLQIEPG-----EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred EEE-EEEcCCCCccceeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 344 889963 335789999999988 68999999999999999999999999999985 22222 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++. .|..|+++|+..... .+.+...++++..++.+..+ ....+||||||||++|||||+
T Consensus 529 i~~v~Q~~~-lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 529 LGVVLQNGR-LMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred cEEEccCCc-cCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 999999975 478899999864321 34455677777777765433 234679999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++||||||||+||+++...+.+.|+++ ++|+|+|||++..+.. ||||++|+++.. ...|+++++...
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~i--v~~G~~~~Ll~~ 674 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRV--VQQGTYDELMAR 674 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999999875 5799999999998865 999999997554 456888888764
No 498
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=9.6e-33 Score=313.00 Aligned_cols=201 Identities=21% Similarity=0.350 Sum_probs=161.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+|+|++. ...+++++|++.+| |.++|+|+||||||||+++|+|+++|++|++. +.+.. ...++|+
T Consensus 348 sf~y~~~~~~il~~i~l~i~~G-----~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 348 TFTYPGKEVPALRNINFKIPAG-----KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred EEecCCCCCccccCceEEeCCC-----CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 8889753 34789999999988 68999999999999999999999999999985 22222 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|+.|+++|+...... ..+.+...++++..++.++.+ ..-.+||||||||++|||||.++|+
T Consensus 423 ~Q~~~-lf~~Ti~~Ni~~~~~~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 423 SQNVH-LFNDTIANNIAYARTE-QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred ccCce-eecchHHHHHhcCCCC-CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 99965 4788999998643221 123455667777777654322 2235699999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|||||||++||+++...+.+.|.++. .++|+|+|||++..+. .||||++++++.. ...|+++++....
T Consensus 501 ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i--~e~g~~~~l~~~~ 569 (582)
T PRK11176 501 ILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE-KADEILVVEDGEI--VERGTHAELLAQN 569 (582)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEE--EEeCCHHHHHhCC
Confidence 999999999999999999999999873 3799999999998876 5999999997554 3568888887653
No 499
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.1e-33 Score=275.63 Aligned_cols=190 Identities=23% Similarity=0.319 Sum_probs=133.9
Q ss_pred ceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 83 TTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+.. ...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 8 l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 76 (221)
T cd03244 8 VSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI-----------DGVDISKIGLHDL 76 (221)
T ss_pred EEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE-----------CCEEhHhCCHHHH
Confidence 45566432 23455555 45799999999999999999999999999999999852 2222221110000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCc--hHHHHHHHHHHhhcCCchhh-----------cccCCCCChHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQ--KDERDMKADLCTDLDLNQVI-----------DRNVGDLSGGELQRFAI 227 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~--~~~~~~~~~~l~~l~L~~~~-----------dr~v~~LSGGe~QRvaI 227 (605)
. -..++.+|.. ..+..++.+.+.. .....++.++++.+++.+.. ++.+.+|||||+||++|
T Consensus 77 ~--~~i~~~~q~~----~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~l 150 (221)
T cd03244 77 R--SRISIIPQDP----VLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCL 150 (221)
T ss_pred h--hhEEEECCCC----ccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHH
Confidence 0 0112222221 1111223322210 01123445556666665443 57899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+||+.+|+++||||||++||+.++..+.++|+++.+ +.|||++|||++++.. ||++++|.+
T Consensus 151 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~ 212 (221)
T cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLDK 212 (221)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEEC
Confidence 9999999999999999999999999999999999865 6899999999999976 999999964
No 500
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.4e-33 Score=281.62 Aligned_cols=201 Identities=23% Similarity=0.324 Sum_probs=143.2
Q ss_pred CcceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC----CCceeeCCCCh
Q 040300 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP----NLGRFNNPPDW 140 (605)
Q Consensus 66 p~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p----~~G~i~~~~~~ 140 (605)
|+ .|++.|+.+ +|+ + ..+.+++ .+.+||+++|+|+||||||||+++|+|+++| +.|++..
T Consensus 2 ~~-~l~~~~l~~--------~~~-~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~---- 66 (254)
T PRK10418 2 PQ-QIELRNIAL--------QAA-Q-PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLL---- 66 (254)
T ss_pred Cc-EEEEeCeEE--------Eec-c-ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEE----
Confidence 66 677777655 442 1 2344444 3479999999999999999999999999999 8998742
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHHhhcccccc-cc-hh-hhhchhhh---hcCchHHHHHHHHHHhhcCCch---hhc
Q 040300 141 QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVD-HI-PK-AVQGNVGQ---VLDQKDERDMKADLCTDLDLNQ---VID 211 (605)
Q Consensus 141 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~-~~-~~~~~v~~---~l~~~~~~~~~~~~l~~l~L~~---~~d 211 (605)
.|..+... ... ....++.+|... .. +. .+...+.. ........+++.++++.++|.+ .++
T Consensus 67 -------~g~~i~~~--~~~--~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 135 (254)
T PRK10418 67 -------DGKPVAPC--ALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLK 135 (254)
T ss_pred -------CCeecccc--ccc--cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhh
Confidence 11111100 000 000111122110 00 00 00001111 0111123356888999999986 679
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+|||+++++..+||++++|.
T Consensus 136 ~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999764 8999999999999999999999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 216 ~G 217 (254)
T PRK10418 216 HG 217 (254)
T ss_pred CC
Confidence 43
Done!